AlfalfaGEDB | Msa0523870

M. sativa cultivar zhongmu-4 / Msa0523870

KEGG: -
GO: GO:0001101 GO:0001786 GO:0003674 GO:0003779 GO:0005488 GO:0005507 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010035 GO:0016020 GO:0016151 GO:0019898 GO:0030054 GO:0031210 GO:0031647 GO:0033993 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048580 GO:0050789 GO:0050793 GO:0050821 GO:0050896 GO:0050997 GO:0051239 GO:0055044 GO:0065007 GO:0065008 GO:0070405 GO:0072341 GO:0090559 GO:0097305 GO:1900140 GO:1901700 GO:2000026
PFAM: PF00257.22

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0523870	QMX78313.1	100.000	222	0	0	1	222	1	222	8.33e-152	430

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0523870	sp\|P42763\|ERD14_ARATH	46.948	213	76	6	1	209	1	180	3.71e-21	89.7

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0523870	A0A7G5VWW1	100.000	222	0	0	1	222	1	222	3.98e-152	430

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001830	Msa0523870	0.803556	3.294734e-49	-8.615850e-47
Msa0023480	Msa0523870	0.846277	2.402562e-59	-8.615850e-47
Msa0162630	Msa0523870	0.842005	3.366685e-58	-8.615850e-47
Msa0227360	Msa0523870	0.801513	8.689395e-49	-8.615850e-47
Msa0386940	Msa0523870	0.957216	4.628852e-115	-8.615850e-47
Msa0432500	Msa0523870	0.815704	8.067370e-52	-8.615850e-47
Msa0475950	Msa0523870	0.943634	8.445807e-103	-8.615850e-47
Msa0482040	Msa0523870	0.804719	1.887703e-49	-8.615850e-47
Msa0244980	Msa0523870	0.813741	2.194875e-51	-8.615850e-47
Msa0283420	Msa0523870	0.819521	1.111816e-52	-8.615850e-47
Msa0284450	Msa0523870	0.804964	1.677346e-49	-8.615850e-47
Msa0285330	Msa0523870	0.810178	1.311284e-50	-8.615850e-47
Msa0523870	Msa0600080	0.816988	4.163925e-52	-8.615850e-47
Msa0523870	Msa0625700	0.832946	7.072559e-56	-8.615850e-47
Msa0523870	Msa0654620	0.807871	4.089818e-50	-8.615850e-47
Msa0523870	Msa0829220	0.807969	3.897692e-50	-8.615850e-47
Msa0523870	Msa0878220	0.804656	1.945699e-49	-8.615850e-47
Msa0523870	Msa1178580	0.807869	4.094865e-50	-8.615850e-47
Msa0523870	Msa1207310	0.801530	8.622506e-49	-8.615850e-47
Msa0523870	Msa1233850	0.812250	4.659272e-51	-8.615850e-47
Msa0523870	Msa1276150	0.808887	2.482683e-50	-8.615850e-47
Msa0523870	Msa1307180	0.817990	2.476058e-52	-8.615850e-47
Msa0523870	Msa1315750	0.800693	1.278347e-48	-8.615850e-47
Msa0523870	Msa1316360	0.820694	5.991924e-53	-8.615850e-47
Msa0523870	Msa1365740	0.963661	2.330854e-122	-8.615850e-47
Msa0523870	Msa1370590	0.801950	7.068083e-49	-8.615850e-47
Msa0523870	Msa1384100	0.800234	1.586022e-48	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0523870	MtrunA17_Chr3g0145051	83.036	224	21	7	1	222	1	209	1.16e-77	232

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0523870	AT1G76180.1	46.948	213	76	6	1	209	1	180	3.77e-22	89.7
Msa0523870	AT1G76180.2	46.948	213	76	6	1	209	1	180	3.77e-22	89.7
Msa0523870	AT1G20450.1	39.015	264	95	11	1	209	1	253	9.49e-21	87.8
Msa0523870	AT1G20440.1	40.000	255	93	11	1	201	1	249	5.41e-20	85.9
Msa0523870	AT1G20450.2	39.163	263	95	11	1	209	1	252	6.49e-20	85.5

Find 56 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGGAGAGAAGAAAGGTATTT+TGG	0.202968	3_4:-77324446	Msa0523870:CDS
TGGTGTATCAAAAGAAATTA+TGG	0.246947	3_4:-77324109	Msa0523870:three_prime_UTR
TCATGTTCAGTAGCAGTCTT+AGG	0.274530	3_4:+77324391	None:intergenic
CACAGAAAAGAAAAGTTGTT+TGG	0.284218	3_4:-77324172	Msa0523870:three_prime_UTR
AGGTTTCCTGGACAAAATTA+AGG	0.300059	3_4:-77324581	Msa0523870:CDS
AAAATTAAGGAGAAGCTTCC+AGG	0.351108	3_4:-77324568	Msa0523870:CDS
TGAAGAGAAGAAAGGTTTCC+TGG	0.355767	3_4:-77324593	Msa0523870:CDS
TCTTCTACTTTGGTCTCTGA+TGG	0.368786	3_4:+77325003	None:intergenic
AAAGAAGAAGAAAGAAAAGA+AGG	0.380764	3_4:-77324683	Msa0523870:CDS
GAAAGAAAAGAAGGAGAAGA+AGG	0.381297	3_4:-77324674	Msa0523870:CDS
TCGAGTGAGGAGGAAGTTGA+TGG	0.382576	3_4:-77324718	Msa0523870:CDS
ACAGAAAAGAAAAGTTGTTT+GGG	0.387488	3_4:-77324171	Msa0523870:three_prime_UTR
GAGAAAGTTGATGTTGTTGA+TGG	0.398275	3_4:-77324631	Msa0523870:CDS
TTTGATCTCTGTTTCAGAGT+TGG	0.421884	3_4:+77325140	None:intergenic
AATATTAATGCTTATGTAGC+TGG	0.437192	3_4:+77325253	None:intergenic
AACAAGATTAATCAAGCAAA+TGG	0.444116	3_4:+77325230	None:intergenic
GTCTCAGCAGATGGCACAGC+AGG	0.446448	3_4:+77324496	None:intergenic
ACAGCAGGAGCAACAACAAC+AGG	0.468581	3_4:+77324511	None:intergenic
ATGATGAAAATCAAAGGAGA+TGG	0.470512	3_4:+77325331	None:intergenic
AAAGAAACACACCAGCCTCT+TGG	0.485431	3_4:-77324965	Msa0523870:CDS
AGGAGGAAGTTGATGGAGAG+AGG	0.487866	3_4:-77324711	Msa0523870:CDS
CATGTTCAGTAGCAGTCTTA+GGG	0.495120	3_4:+77324392	None:intergenic
GTTGTTGTTGTCTCAGCAGA+TGG	0.500792	3_4:+77324487	None:intergenic
GCTTAGTAATCAATTCATCA+TGG	0.502627	3_4:-77325202	Msa0523870:exon
CTCTGTTTCAGAGTTGGTTG+CGG	0.507900	3_4:+77325146	None:intergenic
ACAACATCAACTTTCTCTAC+TGG	0.509084	3_4:+77324637	None:intergenic
CTTCTCTTCAGTGCTTGCTG+TGG	0.512857	3_4:+77324606	None:intergenic
TGATGAAAATCAAAGGAGAT+GGG	0.516533	3_4:+77325332	None:intergenic
CACAGAAAATCACAATGCCT+TGG	0.529006	3_4:+77324262	None:intergenic
GTTGCAACAGCATCCTCTTG+AGG	0.534346	3_4:+77325060	None:intergenic
AGAAAAGAAGGAGAAGAAGG+AGG	0.540684	3_4:-77324671	Msa0523870:CDS
GTGAAGTTTCTCCAAGAGGC+TGG	0.546170	3_4:+77324954	None:intergenic
GCAAGCACTGAAGAGAAGAA+AGG	0.548209	3_4:-77324601	Msa0523870:CDS
CATGATCAAGGAGAGAAGAA+AGG	0.558513	3_4:-77324454	Msa0523870:CDS
TTTAATTGATTTCAATACCA+AGG	0.563023	3_4:-77324279	Msa0523870:three_prime_UTR
TAATCAATTCATCATGGCTG+AGG	0.573271	3_4:-77325196	Msa0523870:exon
ACAACAGCTAGTCATGATCA+AGG	0.576125	3_4:-77324466	Msa0523870:CDS
CTGAAACAGAGATCAAAGAC+AGG	0.576169	3_4:-77325134	Msa0523870:CDS
GTTTCGATGATGAAAATCAA+AGG	0.582073	3_4:+77325325	None:intergenic
TGTTTCAGAGTTGGTTGCGG+TGG	0.586483	3_4:+77325149	None:intergenic
AGGAAGTTGATGGAGAGAGG+AGG	0.587456	3_4:-77324708	Msa0523870:CDS
GGAGCAACAACAACAGGTGG+TGG	0.591480	3_4:+77324517	None:intergenic
AAGATCAAAGAGAAGATACC+TGG	0.609148	3_4:-77324421	Msa0523870:CDS
AGAACATATTAAGCCTCAAG+AGG	0.614539	3_4:-77325073	Msa0523870:CDS
GCAGTCTTAGGGTGATAACC+AGG	0.619784	3_4:+77324403	None:intergenic
ATCGGTGAAGTTTCTCCAAG+AGG	0.645229	3_4:+77324950	None:intergenic
TGAAACAGAGATCAAAGACA+GGG	0.654650	3_4:-77325133	Msa0523870:CDS
GATGAAAATCAAAGGAGATG+GGG	0.656892	3_4:+77325333	None:intergenic
GCAGGAGCAACAACAACAGG+TGG	0.666368	3_4:+77324514	None:intergenic
TATGCATGTATAGTCGAGTG+AGG	0.673354	3_4:-77324731	Msa0523870:intron
GCATGTATAGTCGAGTGAGG+AGG	0.675953	3_4:-77324728	Msa0523870:intron
AAAGCCACAAAACAACACAA+TGG	0.687803	3_4:+77324314	None:intergenic
AGCTTGAAGAGCTATCAGAT+CGG	0.690728	3_4:+77324932	None:intergenic
AGACAACAAAGATCATCACA+AGG	0.715357	3_4:-77324368	Msa0523870:CDS
GGAGAATCAGAACAAGTACG+AGG	0.738041	3_4:-77325175	Msa0523870:CDS
GAAACAGAGATCAAAGACAG+GGG	0.744878	3_4:-77325132	Msa0523870:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GATTGTCAAAAAAAAAATAT+TGG	-	chr3_4:77325301-77325320	Msa0523870:five_prime_UTR	15.0%
!!	GATTGTCAAAAAAAAAATAT+TGG	-	chr3_4:77325301-77325320	Msa0523870:five_prime_UTR	15.0%
!!!	TTTAATTGATTTCAATACCA+AGG	-	chr3_4:77325151-77325170	Msa0523870:CDS	20.0%
!!!	TTTAATTGATTTCAATACCA+AGG	-	chr3_4:77325151-77325170	Msa0523870:CDS	20.0%
!	AATATTAATGCTTATGTAGC+TGG	+	chr3_4:77324180-77324199	None:intergenic	25.0%
!	AACAAGATTAATCAAGCAAA+TGG	+	chr3_4:77324203-77324222	None:intergenic	25.0%
!!	TTCTTCTTTTTCTTCTACTT+TGG	+	chr3_4:77324440-77324459	None:intergenic	25.0%
!	AAAGTAGAAGAAAAAGAAGA+AGG	-	chr3_4:77324439-77324458	Msa0523870:CDS	25.0%
!	AAAGAAGAAGAAAGAAAAGA+AGG	-	chr3_4:77324747-77324766	Msa0523870:intron	25.0%
!	ACAGAAAAGAAAAGTTGTTT+GGG	-	chr3_4:77325259-77325278	Msa0523870:five_prime_UTR	25.0%
!	TGGTGTATCAAAAGAAATTA+TGG	-	chr3_4:77325321-77325340	Msa0523870:five_prime_UTR	25.0%
!	AATATTAATGCTTATGTAGC+TGG	+	chr3_4:77324180-77324199	None:intergenic	25.0%
!	AACAAGATTAATCAAGCAAA+TGG	+	chr3_4:77324203-77324222	None:intergenic	25.0%
!!	TTCTTCTTTTTCTTCTACTT+TGG	+	chr3_4:77324440-77324459	None:intergenic	25.0%
!	AAAGTAGAAGAAAAAGAAGA+AGG	-	chr3_4:77324439-77324458	Msa0523870:CDS	25.0%
!	AAAGAAGAAGAAAGAAAAGA+AGG	-	chr3_4:77324747-77324766	Msa0523870:intron	25.0%
!	ACAGAAAAGAAAAGTTGTTT+GGG	-	chr3_4:77325259-77325278	Msa0523870:five_prime_UTR	25.0%
!	TGGTGTATCAAAAGAAATTA+TGG	-	chr3_4:77325321-77325340	Msa0523870:five_prime_UTR	25.0%
	TGATGAAAATCAAAGGAGAT+GGG	+	chr3_4:77324101-77324120	None:intergenic	30.0%
	ATGATGAAAATCAAAGGAGA+TGG	+	chr3_4:77324102-77324121	None:intergenic	30.0%
	GTTTCGATGATGAAAATCAA+AGG	+	chr3_4:77324108-77324127	None:intergenic	30.0%
	GCTTAGTAATCAATTCATCA+TGG	-	chr3_4:77324228-77324247	Msa0523870:three_prime_UTR	30.0%
!	TTTTCTAGGTGGTAAGAAAA+AGG	-	chr3_4:77324330-77324349	Msa0523870:exon	30.0%
	CACAGAAAAGAAAAGTTGTT+TGG	-	chr3_4:77325258-77325277	Msa0523870:five_prime_UTR	30.0%
	TGATGAAAATCAAAGGAGAT+GGG	+	chr3_4:77324101-77324120	None:intergenic	30.0%
	ATGATGAAAATCAAAGGAGA+TGG	+	chr3_4:77324102-77324121	None:intergenic	30.0%
	GTTTCGATGATGAAAATCAA+AGG	+	chr3_4:77324108-77324127	None:intergenic	30.0%
	GCTTAGTAATCAATTCATCA+TGG	-	chr3_4:77324228-77324247	Msa0523870:three_prime_UTR	30.0%
!	TTTTCTAGGTGGTAAGAAAA+AGG	-	chr3_4:77324330-77324349	Msa0523870:exon	30.0%
	CACAGAAAAGAAAAGTTGTT+TGG	-	chr3_4:77325258-77325277	Msa0523870:five_prime_UTR	30.0%
	GATGAAAATCAAAGGAGATG+GGG	+	chr3_4:77324100-77324119	None:intergenic	35.0%
	TAATCAATTCATCATGGCTG+AGG	-	chr3_4:77324234-77324253	Msa0523870:three_prime_UTR	35.0%
	TTTGATCTCTGTTTCAGAGT+TGG	+	chr3_4:77324293-77324312	None:intergenic	35.0%
	TGAAACAGAGATCAAAGACA+GGG	-	chr3_4:77324297-77324316	Msa0523870:three_prime_UTR	35.0%
!!!	AGGGGTGTTTTTGATTTTCT+AGG	-	chr3_4:77324316-77324335	Msa0523870:three_prime_UTR	35.0%
!!!	GGTGTTTTTGATTTTCTAGG+TGG	-	chr3_4:77324319-77324338	Msa0523870:three_prime_UTR	35.0%
	AGAACATATTAAGCCTCAAG+AGG	-	chr3_4:77324357-77324376	Msa0523870:CDS	35.0%
!!	TGCAACTGATTTTAGTCACA+AGG	-	chr3_4:77324387-77324406	Msa0523870:CDS	35.0%
	TGTATTGAATACGTGTCAAG+TGG	-	chr3_4:77324583-77324602	Msa0523870:CDS	35.0%
	GAAAGAAAAGAAGGAGAAGA+AGG	-	chr3_4:77324756-77324775	Msa0523870:intron	35.0%
	ACAACATCAACTTTCTCTAC+TGG	+	chr3_4:77324796-77324815	None:intergenic	35.0%
!!	GAGAAAGTTGATGTTGTTGA+TGG	-	chr3_4:77324799-77324818	Msa0523870:intron	35.0%
	AGGTTTCCTGGACAAAATTA+AGG	-	chr3_4:77324849-77324868	Msa0523870:intron	35.0%
	AAAATTAAGGAGAAGCTTCC+AGG	-	chr3_4:77324862-77324881	Msa0523870:intron	35.0%
!!!	AGGAGAGAAGAAAGGTATTT+TGG	-	chr3_4:77324984-77325003	Msa0523870:CDS	35.0%
	AAGATCAAAGAGAAGATACC+TGG	-	chr3_4:77325009-77325028	Msa0523870:CDS	35.0%
	AGACAACAAAGATCATCACA+AGG	-	chr3_4:77325062-77325081	Msa0523870:CDS	35.0%
	AAAGCCACAAAACAACACAA+TGG	+	chr3_4:77325119-77325138	None:intergenic	35.0%
!!!	ATTGTGTTGTTTTGTGGCTT+TGG	-	chr3_4:77325118-77325137	Msa0523870:CDS	35.0%
!!!	TTGTGTTGTTTTGTGGCTTT+GGG	-	chr3_4:77325119-77325138	Msa0523870:CDS	35.0%
	GATGAAAATCAAAGGAGATG+GGG	+	chr3_4:77324100-77324119	None:intergenic	35.0%
	TAATCAATTCATCATGGCTG+AGG	-	chr3_4:77324234-77324253	Msa0523870:three_prime_UTR	35.0%
	TTTGATCTCTGTTTCAGAGT+TGG	+	chr3_4:77324293-77324312	None:intergenic	35.0%
	TGAAACAGAGATCAAAGACA+GGG	-	chr3_4:77324297-77324316	Msa0523870:three_prime_UTR	35.0%
!!!	AGGGGTGTTTTTGATTTTCT+AGG	-	chr3_4:77324316-77324335	Msa0523870:three_prime_UTR	35.0%
!!!	GGTGTTTTTGATTTTCTAGG+TGG	-	chr3_4:77324319-77324338	Msa0523870:three_prime_UTR	35.0%
	AGAACATATTAAGCCTCAAG+AGG	-	chr3_4:77324357-77324376	Msa0523870:CDS	35.0%
!!	TGCAACTGATTTTAGTCACA+AGG	-	chr3_4:77324387-77324406	Msa0523870:CDS	35.0%
	TGTATTGAATACGTGTCAAG+TGG	-	chr3_4:77324583-77324602	Msa0523870:CDS	35.0%
	GAAAGAAAAGAAGGAGAAGA+AGG	-	chr3_4:77324756-77324775	Msa0523870:intron	35.0%
	ACAACATCAACTTTCTCTAC+TGG	+	chr3_4:77324796-77324815	None:intergenic	35.0%
!!	GAGAAAGTTGATGTTGTTGA+TGG	-	chr3_4:77324799-77324818	Msa0523870:intron	35.0%
	AGGTTTCCTGGACAAAATTA+AGG	-	chr3_4:77324849-77324868	Msa0523870:intron	35.0%
	AAAATTAAGGAGAAGCTTCC+AGG	-	chr3_4:77324862-77324881	Msa0523870:intron	35.0%
!!!	AGGAGAGAAGAAAGGTATTT+TGG	-	chr3_4:77324984-77325003	Msa0523870:CDS	35.0%
	AAGATCAAAGAGAAGATACC+TGG	-	chr3_4:77325009-77325028	Msa0523870:CDS	35.0%
	AGACAACAAAGATCATCACA+AGG	-	chr3_4:77325062-77325081	Msa0523870:CDS	35.0%
	AAAGCCACAAAACAACACAA+TGG	+	chr3_4:77325119-77325138	None:intergenic	35.0%
!!!	ATTGTGTTGTTTTGTGGCTT+TGG	-	chr3_4:77325118-77325137	Msa0523870:CDS	35.0%
!!!	TTGTGTTGTTTTGTGGCTTT+GGG	-	chr3_4:77325119-77325138	Msa0523870:CDS	35.0%
	CTGAAACAGAGATCAAAGAC+AGG	-	chr3_4:77324296-77324315	Msa0523870:three_prime_UTR	40.0%
	GAAACAGAGATCAAAGACAG+GGG	-	chr3_4:77324298-77324317	Msa0523870:three_prime_UTR	40.0%
	TCTTCTACTTTGGTCTCTGA+TGG	+	chr3_4:77324430-77324449	None:intergenic	40.0%
	AGCTTGAAGAGCTATCAGAT+CGG	+	chr3_4:77324501-77324520	None:intergenic	40.0%
	TATGCATGTATAGTCGAGTG+AGG	-	chr3_4:77324699-77324718	Msa0523870:CDS	40.0%
	AGAAAAGAAGGAGAAGAAGG+AGG	-	chr3_4:77324759-77324778	Msa0523870:intron	40.0%
	TGAAGAGAAGAAAGGTTTCC+TGG	-	chr3_4:77324837-77324856	Msa0523870:intron	40.0%
!	GCTTCTCCTTAATTTTGTCC+AGG	+	chr3_4:77324858-77324877	None:intergenic	40.0%
	ACAACAGCTAGTCATGATCA+AGG	-	chr3_4:77324964-77324983	Msa0523870:CDS	40.0%
	CATGATCAAGGAGAGAAGAA+AGG	-	chr3_4:77324976-77324995	Msa0523870:CDS	40.0%
	CATGTTCAGTAGCAGTCTTA+GGG	+	chr3_4:77325041-77325060	None:intergenic	40.0%
	TCATGTTCAGTAGCAGTCTT+AGG	+	chr3_4:77325042-77325061	None:intergenic	40.0%
!!!	CGATCCATTGTGTTGTTTTG+TGG	-	chr3_4:77325112-77325131	Msa0523870:CDS	40.0%
!!!	TGTGTTGTTTTGTGGCTTTG+GGG	-	chr3_4:77325120-77325139	Msa0523870:CDS	40.0%
	CACAGAAAATCACAATGCCT+TGG	+	chr3_4:77325171-77325190	None:intergenic	40.0%
	CTGAAACAGAGATCAAAGAC+AGG	-	chr3_4:77324296-77324315	Msa0523870:three_prime_UTR	40.0%
	GAAACAGAGATCAAAGACAG+GGG	-	chr3_4:77324298-77324317	Msa0523870:three_prime_UTR	40.0%
	TCTTCTACTTTGGTCTCTGA+TGG	+	chr3_4:77324430-77324449	None:intergenic	40.0%
	AGCTTGAAGAGCTATCAGAT+CGG	+	chr3_4:77324501-77324520	None:intergenic	40.0%
	TATGCATGTATAGTCGAGTG+AGG	-	chr3_4:77324699-77324718	Msa0523870:CDS	40.0%
	AGAAAAGAAGGAGAAGAAGG+AGG	-	chr3_4:77324759-77324778	Msa0523870:intron	40.0%
	TGAAGAGAAGAAAGGTTTCC+TGG	-	chr3_4:77324837-77324856	Msa0523870:intron	40.0%
!	GCTTCTCCTTAATTTTGTCC+AGG	+	chr3_4:77324858-77324877	None:intergenic	40.0%
	ACAACAGCTAGTCATGATCA+AGG	-	chr3_4:77324964-77324983	Msa0523870:CDS	40.0%
	CATGATCAAGGAGAGAAGAA+AGG	-	chr3_4:77324976-77324995	Msa0523870:CDS	40.0%
	CATGTTCAGTAGCAGTCTTA+GGG	+	chr3_4:77325041-77325060	None:intergenic	40.0%
	TCATGTTCAGTAGCAGTCTT+AGG	+	chr3_4:77325042-77325061	None:intergenic	40.0%
!!!	CGATCCATTGTGTTGTTTTG+TGG	-	chr3_4:77325112-77325131	Msa0523870:CDS	40.0%
!!!	TGTGTTGTTTTGTGGCTTTG+GGG	-	chr3_4:77325120-77325139	Msa0523870:CDS	40.0%
	CACAGAAAATCACAATGCCT+TGG	+	chr3_4:77325171-77325190	None:intergenic	40.0%
	GGAGAATCAGAACAAGTACG+AGG	-	chr3_4:77324255-77324274	Msa0523870:three_prime_UTR	45.0%
!	CTCTGTTTCAGAGTTGGTTG+CGG	+	chr3_4:77324287-77324306	None:intergenic	45.0%
	AAAGAAACACACCAGCCTCT+TGG	-	chr3_4:77324465-77324484	Msa0523870:CDS	45.0%
	ATCGGTGAAGTTTCTCCAAG+AGG	+	chr3_4:77324483-77324502	None:intergenic	45.0%
	GACTGAACGTAGTGTCAACA+AGG	+	chr3_4:77324617-77324636	None:intergenic	45.0%
!!	GCAAGCACTGAAGAGAAGAA+AGG	-	chr3_4:77324829-77324848	Msa0523870:intron	45.0%
!	TCGTCAGTTTTCTTGTGTCC+TGG	+	chr3_4:77324883-77324902	None:intergenic	45.0%
!	GTTGTTGTTGTCTCAGCAGA+TGG	+	chr3_4:77324946-77324965	None:intergenic	45.0%
!!!	GTGTTGTTTTGTGGCTTTGG+GGG	-	chr3_4:77325121-77325140	Msa0523870:CDS	45.0%
	GGAGAATCAGAACAAGTACG+AGG	-	chr3_4:77324255-77324274	Msa0523870:three_prime_UTR	45.0%
!	CTCTGTTTCAGAGTTGGTTG+CGG	+	chr3_4:77324287-77324306	None:intergenic	45.0%
	AAAGAAACACACCAGCCTCT+TGG	-	chr3_4:77324465-77324484	Msa0523870:CDS	45.0%
	ATCGGTGAAGTTTCTCCAAG+AGG	+	chr3_4:77324483-77324502	None:intergenic	45.0%
	GACTGAACGTAGTGTCAACA+AGG	+	chr3_4:77324617-77324636	None:intergenic	45.0%
!!	GCAAGCACTGAAGAGAAGAA+AGG	-	chr3_4:77324829-77324848	Msa0523870:intron	45.0%
!	TCGTCAGTTTTCTTGTGTCC+TGG	+	chr3_4:77324883-77324902	None:intergenic	45.0%
!	GTTGTTGTTGTCTCAGCAGA+TGG	+	chr3_4:77324946-77324965	None:intergenic	45.0%
!!!	GTGTTGTTTTGTGGCTTTGG+GGG	-	chr3_4:77325121-77325140	Msa0523870:CDS	45.0%
!	TGTTTCAGAGTTGGTTGCGG+TGG	+	chr3_4:77324284-77324303	None:intergenic	50.0%
	GTTGCAACAGCATCCTCTTG+AGG	+	chr3_4:77324373-77324392	None:intergenic	50.0%
	GTGAAGTTTCTCCAAGAGGC+TGG	+	chr3_4:77324479-77324498	None:intergenic	50.0%
	ATACGTGTCAAGTGGCAGAG+TGG	-	chr3_4:77324591-77324610	Msa0523870:CDS	50.0%
	GCATGTATAGTCGAGTGAGG+AGG	-	chr3_4:77324702-77324721	Msa0523870:CDS	50.0%
	TCGAGTGAGGAGGAAGTTGA+TGG	-	chr3_4:77324712-77324731	Msa0523870:CDS	50.0%
!!	AGGAGGAAGTTGATGGAGAG+AGG	-	chr3_4:77324719-77324738	Msa0523870:CDS	50.0%
!!	AGGAAGTTGATGGAGAGAGG+AGG	-	chr3_4:77324722-77324741	Msa0523870:intron	50.0%
!	CTTCTCTTCAGTGCTTGCTG+TGG	+	chr3_4:77324827-77324846	None:intergenic	50.0%
	ACAGCAGGAGCAACAACAAC+AGG	+	chr3_4:77324922-77324941	None:intergenic	50.0%
	GCAGTCTTAGGGTGATAACC+AGG	+	chr3_4:77325030-77325049	None:intergenic	50.0%
!	TGTTTCAGAGTTGGTTGCGG+TGG	+	chr3_4:77324284-77324303	None:intergenic	50.0%
	GTTGCAACAGCATCCTCTTG+AGG	+	chr3_4:77324373-77324392	None:intergenic	50.0%
	GTGAAGTTTCTCCAAGAGGC+TGG	+	chr3_4:77324479-77324498	None:intergenic	50.0%
	ATACGTGTCAAGTGGCAGAG+TGG	-	chr3_4:77324591-77324610	Msa0523870:CDS	50.0%
	GCATGTATAGTCGAGTGAGG+AGG	-	chr3_4:77324702-77324721	Msa0523870:CDS	50.0%
	TCGAGTGAGGAGGAAGTTGA+TGG	-	chr3_4:77324712-77324731	Msa0523870:CDS	50.0%
!!	AGGAGGAAGTTGATGGAGAG+AGG	-	chr3_4:77324719-77324738	Msa0523870:CDS	50.0%
!!	AGGAAGTTGATGGAGAGAGG+AGG	-	chr3_4:77324722-77324741	Msa0523870:intron	50.0%
!	CTTCTCTTCAGTGCTTGCTG+TGG	+	chr3_4:77324827-77324846	None:intergenic	50.0%
	ACAGCAGGAGCAACAACAAC+AGG	+	chr3_4:77324922-77324941	None:intergenic	50.0%
	GCAGTCTTAGGGTGATAACC+AGG	+	chr3_4:77325030-77325049	None:intergenic	50.0%
	GGAGCAACAACAACAGGTGG+TGG	+	chr3_4:77324916-77324935	None:intergenic	55.0%
	GCAGGAGCAACAACAACAGG+TGG	+	chr3_4:77324919-77324938	None:intergenic	55.0%
	GGAGCAACAACAACAGGTGG+TGG	+	chr3_4:77324916-77324935	None:intergenic	55.0%
	GCAGGAGCAACAACAACAGG+TGG	+	chr3_4:77324919-77324938	None:intergenic	55.0%
	GTCTCAGCAGATGGCACAGC+AGG	+	chr3_4:77324937-77324956	None:intergenic	60.0%
	GTCTCAGCAGATGGCACAGC+AGG	+	chr3_4:77324937-77324956	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	77324076	77325376	77324076	ID=Msa0523870;Name=Msa0523870
chr3_4	mRNA	77324076	77325376	77324076	ID=Msa0523870-mRNA-1;Parent=Msa0523870;Name=Msa0523870-mRNA-1;_AED=0.00;_eAED=0.00;_QI=171\|1\|1\|1\|1\|1\|2\|272\|222
chr3_4	exon	77324076	77324740	77324076	ID=Msa0523870-mRNA-1:exon:22623;Parent=Msa0523870-mRNA-1
chr3_4	exon	77324930	77325376	77324930	ID=Msa0523870-mRNA-1:exon:22622;Parent=Msa0523870-mRNA-1
chr3_4	five_prime_UTR	77325206	77325376	77325206	ID=Msa0523870-mRNA-1:five_prime_utr;Parent=Msa0523870-mRNA-1
chr3_4	CDS	77324930	77325205	77324930	ID=Msa0523870-mRNA-1:cds;Parent=Msa0523870-mRNA-1
chr3_4	CDS	77324348	77324740	77324348	ID=Msa0523870-mRNA-1:cds;Parent=Msa0523870-mRNA-1
chr3_4	three_prime_UTR	77324076	77324347	77324076	ID=Msa0523870-mRNA-1:three_prime_utr;Parent=Msa0523870-mRNA-1

Gene Sequence

>Msa0523870

ATGGCTGAGGAGAATCAGAACAAGTACGAGGAAACCACCGCAACCAACTCTGAAACAGAGATCAAAGACAGGGGTGTTTTTGATTTTCTAGGTGGTAAGAAAAAGGATGAAGAACATATTAAGCCTCAAGAGGATGCTGTTGCAACTGATTTTAGTCACAAGGTGACTTTGTATGAAGCTCCATCAGAGACCAAAGTAGAAGAAAAAGAAGAAGGTGAAAAGAAACACACCAGCCTCTTGGAGAAACTTCACCGATCTGATAGCTCTTCAAGCTCTTCGAGTGAGGAGGAAGTTGATGGAGAGAGGAGGAAAAAGAAGAAGAAAGAAAAGAAGGAGAAGAAGGAGGACACATCAGTGCCAGTAGAGAAAGTTGATGTTGTTGATGGAACCACAGCAAGCACTGAAGAGAAGAAAGGTTTCCTGGACAAAATTAAGGAGAAGCTTCCAGGACACAAGAAAACTGACGATGTAACAACTCCACCACCTGTTGTTGTTGCTCCTGCTGTGCCATCTGCTGAGACAACAACAACAACAGCTAGTCATGATCAAGGAGAGAAGAAAGGTATTTTGGAAAAGATCAAAGAGAAGATACCTGGTTATCACCCTAAGACTGCTACTGAACATGAAGACAACAAAGATCATCACAAGGATGAGACTACTTCTCATTGA

Protein sequence

>Msa0523870

MAEENQNKYEETTATNSETEIKDRGVFDFLGGKKKDEEHIKPQEDAVATDFSHKVTLYEAPSETKVEEKEEGEKKHTSLLEKLHRSDSSSSSSSEEEVDGERRKKKKKEKKEKKEDTSVPVEKVDVVDGTTASTEEKKGFLDKIKEKLPGHKKTDDVTTPPPVVVAPAVPSAETTTTTASHDQGEKKGILEKIKEKIPGYHPKTATEHEDNKDHHKDETTSH*