AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0386940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0386940 MtrunA17_Chr3g0145051 83.036 224 21 7 1 222 1 209 1.16e-77 232
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0386940 AT1G76180.1 46.948 213 76 6 1 209 1 180 3.77e-22 89.7
Msa0386940 AT1G76180.2 46.948 213 76 6 1 209 1 180 3.77e-22 89.7
Msa0386940 AT1G20450.1 39.015 264 95 11 1 209 1 253 9.49e-21 87.8
Msa0386940 AT1G20440.1 40.000 255 93 11 1 201 1 249 5.41e-20 85.9
Msa0386940 AT1G20450.2 39.163 263 95 11 1 209 1 252 6.49e-20 85.5

Find 54 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAGAGAAGAAAGGTATTT+TGG 0.202968 3_1:-90778236 Msa0386940:CDS
TGGTGTATCAAAAGAAATTA+TGG 0.246947 3_1:-90777899 Msa0386940:three_prime_UTR
TCATGTTCAGTAGCAGTCTT+AGG 0.274530 3_1:+90778181 None:intergenic
CACAGAAAAGAAAAGTTGTT+TGG 0.284218 3_1:-90777962 Msa0386940:three_prime_UTR
AGGTTTCCTGGACAAAATTA+AGG 0.300059 3_1:-90778371 Msa0386940:CDS
AAAATTAAGGAGAAGCTTCC+AGG 0.351108 3_1:-90778358 Msa0386940:CDS
TGAAGAGAAGAAAGGTTTCC+TGG 0.355767 3_1:-90778383 Msa0386940:CDS
TCTTCTACTTTGGTCTCTGA+TGG 0.368786 3_1:+90778790 None:intergenic
AAAGAAGAAGAAAGAAAAGA+AGG 0.380764 3_1:-90778473 Msa0386940:CDS
GAAAGAAAAGAAGGAGAAGA+AGG 0.381297 3_1:-90778464 Msa0386940:CDS
TCGAGTGAGGAGGAAGTTGA+TGG 0.382576 3_1:-90778508 Msa0386940:CDS
ACAGAAAAGAAAAGTTGTTT+GGG 0.387488 3_1:-90777961 Msa0386940:three_prime_UTR
GAGAAAGTTGATGTTGTTGA+TGG 0.398275 3_1:-90778421 Msa0386940:CDS
TTTAATTGATTTCAATATCA+AGG 0.403210 3_1:-90778069 Msa0386940:three_prime_UTR
TTTGATCTCTGTTTCAGAGT+TGG 0.421884 3_1:+90778927 None:intergenic
AATATTAATGCTTATGTAGC+TGG 0.437192 3_1:+90779040 None:intergenic
AACAAGATTAATCAAGCAAA+TGG 0.444116 3_1:+90779017 None:intergenic
GTCTCAGCAGATGGCACAGC+AGG 0.446448 3_1:+90778286 None:intergenic
ACAGCAGGAGCAACAACAAC+AGG 0.468581 3_1:+90778301 None:intergenic
ATGATGAAAATCAAAGGAGA+TGG 0.470512 3_1:+90779118 None:intergenic
AAAGAAACACACCAGCCTCT+TGG 0.485431 3_1:-90778752 Msa0386940:CDS
AGGAGGAAGTTGATGGAGAG+AGG 0.487866 3_1:-90778501 Msa0386940:CDS
CATGTTCAGTAGCAGTCTTA+GGG 0.495120 3_1:+90778182 None:intergenic
GTTGTTGTTGTCTCAGCAGA+TGG 0.500792 3_1:+90778277 None:intergenic
GCTTAGTAATCAATTCATCA+TGG 0.502627 3_1:-90778989 Msa0386940:exon
CTCTGTTTCAGAGTTGGTTG+CGG 0.507900 3_1:+90778933 None:intergenic
ACAACATCAACTTTCTCTAC+TGG 0.509084 3_1:+90778427 None:intergenic
TGATGAAAATCAAAGGAGAT+GGG 0.516533 3_1:+90779119 None:intergenic
GTTGCAACAGCATCCTCTTG+AGG 0.534346 3_1:+90778847 None:intergenic
AGAAAAGAAGGAGAAGAAGG+AGG 0.540684 3_1:-90778461 Msa0386940:CDS
GTGAAGTTTCTCCAAGAGGC+TGG 0.546170 3_1:+90778741 None:intergenic
GCAAGCACTGAAGAGAAGAA+AGG 0.548209 3_1:-90778391 Msa0386940:CDS
CATGATCAAGGAGAGAAGAA+AGG 0.558513 3_1:-90778244 Msa0386940:CDS
TAATCAATTCATCATGGCTG+AGG 0.573271 3_1:-90778983 Msa0386940:exon
ACAACAGCTAGTCATGATCA+AGG 0.576125 3_1:-90778256 Msa0386940:CDS
CTGAAACAGAGATCAAAGAC+AGG 0.576169 3_1:-90778921 Msa0386940:CDS
GTTTCGATGATGAAAATCAA+AGG 0.582073 3_1:+90779112 None:intergenic
TGTTTCAGAGTTGGTTGCGG+TGG 0.586483 3_1:+90778936 None:intergenic
AGGAAGTTGATGGAGAGAGG+AGG 0.587456 3_1:-90778498 Msa0386940:CDS
GGAGCAACAACAACAGGTGG+TGG 0.591480 3_1:+90778307 None:intergenic
AAGATCAAAGAGAAGATACC+TGG 0.609148 3_1:-90778211 Msa0386940:CDS
AGAACATATTAAGCCTCAAG+AGG 0.614539 3_1:-90778860 Msa0386940:CDS
GCAGTCTTAGGGTGATAACC+AGG 0.619784 3_1:+90778193 None:intergenic
TATGCATGTATAGTCGAGTG+AGG 0.638826 3_1:-90778521 Msa0386940:intron
GCATGTATAGTCGAGTGAGG+AGG 0.641425 3_1:-90778518 Msa0386940:intron
ATCGGTGAAGTTTCTCCAAG+AGG 0.645229 3_1:+90778737 None:intergenic
TGAAACAGAGATCAAAGACA+GGG 0.654650 3_1:-90778920 Msa0386940:CDS
GATGAAAATCAAAGGAGATG+GGG 0.656892 3_1:+90779120 None:intergenic
GCAGGAGCAACAACAACAGG+TGG 0.666368 3_1:+90778304 None:intergenic
AAAGCCACAAAACAACACAA+TGG 0.687803 3_1:+90778104 None:intergenic
AGCTTGAAGAGCTATCAGAT+CGG 0.690728 3_1:+90778719 None:intergenic
AGACAACAAAGATCATCACA+AGG 0.715357 3_1:-90778158 Msa0386940:CDS
GGAGAATCAGAACAAGTACG+AGG 0.738041 3_1:-90778962 Msa0386940:CDS
GAAACAGAGATCAAAGACAG+GGG 0.744878 3_1:-90778919 Msa0386940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTGATTTCAATATCA+AGG - chr3_1:90778938-90778957 Msa0386940:CDS 15.0%
!! GATTGTCAAAAAAAAAATAT+TGG - chr3_1:90779088-90779107 Msa0386940:five_prime_UTR 15.0%
!!! TTTAATTGATTTCAATATCA+AGG - chr3_1:90778938-90778957 Msa0386940:CDS 15.0%
!! GATTGTCAAAAAAAAAATAT+TGG - chr3_1:90779088-90779107 Msa0386940:five_prime_UTR 15.0%
! AATATTAATGCTTATGTAGC+TGG + chr3_1:90777970-90777989 None:intergenic 25.0%
! AACAAGATTAATCAAGCAAA+TGG + chr3_1:90777993-90778012 None:intergenic 25.0%
!! TTCTTCTTTTTCTTCTACTT+TGG + chr3_1:90778230-90778249 None:intergenic 25.0%
! AAAGTAGAAGAAAAAGAAGA+AGG - chr3_1:90778229-90778248 Msa0386940:CDS 25.0%
! AAAGAAGAAGAAAGAAAAGA+AGG - chr3_1:90778534-90778553 Msa0386940:intron 25.0%
! ACAGAAAAGAAAAGTTGTTT+GGG - chr3_1:90779046-90779065 Msa0386940:five_prime_UTR 25.0%
! TGGTGTATCAAAAGAAATTA+TGG - chr3_1:90779108-90779127 Msa0386940:five_prime_UTR 25.0%
! AATATTAATGCTTATGTAGC+TGG + chr3_1:90777970-90777989 None:intergenic 25.0%
! AACAAGATTAATCAAGCAAA+TGG + chr3_1:90777993-90778012 None:intergenic 25.0%
!! TTCTTCTTTTTCTTCTACTT+TGG + chr3_1:90778230-90778249 None:intergenic 25.0%
! AAAGTAGAAGAAAAAGAAGA+AGG - chr3_1:90778229-90778248 Msa0386940:CDS 25.0%
! AAAGAAGAAGAAAGAAAAGA+AGG - chr3_1:90778534-90778553 Msa0386940:intron 25.0%
! ACAGAAAAGAAAAGTTGTTT+GGG - chr3_1:90779046-90779065 Msa0386940:five_prime_UTR 25.0%
! TGGTGTATCAAAAGAAATTA+TGG - chr3_1:90779108-90779127 Msa0386940:five_prime_UTR 25.0%
TGATGAAAATCAAAGGAGAT+GGG + chr3_1:90777891-90777910 None:intergenic 30.0%
ATGATGAAAATCAAAGGAGA+TGG + chr3_1:90777892-90777911 None:intergenic 30.0%
GTTTCGATGATGAAAATCAA+AGG + chr3_1:90777898-90777917 None:intergenic 30.0%
GCTTAGTAATCAATTCATCA+TGG - chr3_1:90778018-90778037 Msa0386940:three_prime_UTR 30.0%
! TTTTCTAGGTGGTAAGAAAA+AGG - chr3_1:90778120-90778139 Msa0386940:exon 30.0%
CACAGAAAAGAAAAGTTGTT+TGG - chr3_1:90779045-90779064 Msa0386940:five_prime_UTR 30.0%
TGATGAAAATCAAAGGAGAT+GGG + chr3_1:90777891-90777910 None:intergenic 30.0%
ATGATGAAAATCAAAGGAGA+TGG + chr3_1:90777892-90777911 None:intergenic 30.0%
GTTTCGATGATGAAAATCAA+AGG + chr3_1:90777898-90777917 None:intergenic 30.0%
GCTTAGTAATCAATTCATCA+TGG - chr3_1:90778018-90778037 Msa0386940:three_prime_UTR 30.0%
! TTTTCTAGGTGGTAAGAAAA+AGG - chr3_1:90778120-90778139 Msa0386940:exon 30.0%
CACAGAAAAGAAAAGTTGTT+TGG - chr3_1:90779045-90779064 Msa0386940:five_prime_UTR 30.0%
GATGAAAATCAAAGGAGATG+GGG + chr3_1:90777890-90777909 None:intergenic 35.0%
TAATCAATTCATCATGGCTG+AGG - chr3_1:90778024-90778043 Msa0386940:three_prime_UTR 35.0%
TTTGATCTCTGTTTCAGAGT+TGG + chr3_1:90778083-90778102 None:intergenic 35.0%
TGAAACAGAGATCAAAGACA+GGG - chr3_1:90778087-90778106 Msa0386940:three_prime_UTR 35.0%
!!! AGGGGTGTTTTTGATTTTCT+AGG - chr3_1:90778106-90778125 Msa0386940:three_prime_UTR 35.0%
!!! GGTGTTTTTGATTTTCTAGG+TGG - chr3_1:90778109-90778128 Msa0386940:three_prime_UTR 35.0%
AGAACATATTAAGCCTCAAG+AGG - chr3_1:90778147-90778166 Msa0386940:CDS 35.0%
!! TGCAACTGATTTTAGTCACA+AGG - chr3_1:90778177-90778196 Msa0386940:CDS 35.0%
TGTATTGAATACGTGTCAAG+TGG - chr3_1:90778366-90778385 Msa0386940:CDS 35.0%
GAAAGAAAAGAAGGAGAAGA+AGG - chr3_1:90778543-90778562 Msa0386940:intron 35.0%
ACAACATCAACTTTCTCTAC+TGG + chr3_1:90778583-90778602 None:intergenic 35.0%
!! GAGAAAGTTGATGTTGTTGA+TGG - chr3_1:90778586-90778605 Msa0386940:intron 35.0%
AGGTTTCCTGGACAAAATTA+AGG - chr3_1:90778636-90778655 Msa0386940:intron 35.0%
AAAATTAAGGAGAAGCTTCC+AGG - chr3_1:90778649-90778668 Msa0386940:intron 35.0%
!!! AGGAGAGAAGAAAGGTATTT+TGG - chr3_1:90778771-90778790 Msa0386940:CDS 35.0%
AAGATCAAAGAGAAGATACC+TGG - chr3_1:90778796-90778815 Msa0386940:CDS 35.0%
AGACAACAAAGATCATCACA+AGG - chr3_1:90778849-90778868 Msa0386940:CDS 35.0%
AAAGCCACAAAACAACACAA+TGG + chr3_1:90778906-90778925 None:intergenic 35.0%
!!! ATTGTGTTGTTTTGTGGCTT+TGG - chr3_1:90778905-90778924 Msa0386940:CDS 35.0%
!!! TTGTGTTGTTTTGTGGCTTT+GGG - chr3_1:90778906-90778925 Msa0386940:CDS 35.0%
GATGAAAATCAAAGGAGATG+GGG + chr3_1:90777890-90777909 None:intergenic 35.0%
TAATCAATTCATCATGGCTG+AGG - chr3_1:90778024-90778043 Msa0386940:three_prime_UTR 35.0%
TTTGATCTCTGTTTCAGAGT+TGG + chr3_1:90778083-90778102 None:intergenic 35.0%
TGAAACAGAGATCAAAGACA+GGG - chr3_1:90778087-90778106 Msa0386940:three_prime_UTR 35.0%
!!! AGGGGTGTTTTTGATTTTCT+AGG - chr3_1:90778106-90778125 Msa0386940:three_prime_UTR 35.0%
!!! GGTGTTTTTGATTTTCTAGG+TGG - chr3_1:90778109-90778128 Msa0386940:three_prime_UTR 35.0%
AGAACATATTAAGCCTCAAG+AGG - chr3_1:90778147-90778166 Msa0386940:CDS 35.0%
!! TGCAACTGATTTTAGTCACA+AGG - chr3_1:90778177-90778196 Msa0386940:CDS 35.0%
TGTATTGAATACGTGTCAAG+TGG - chr3_1:90778366-90778385 Msa0386940:CDS 35.0%
GAAAGAAAAGAAGGAGAAGA+AGG - chr3_1:90778543-90778562 Msa0386940:intron 35.0%
ACAACATCAACTTTCTCTAC+TGG + chr3_1:90778583-90778602 None:intergenic 35.0%
!! GAGAAAGTTGATGTTGTTGA+TGG - chr3_1:90778586-90778605 Msa0386940:intron 35.0%
AGGTTTCCTGGACAAAATTA+AGG - chr3_1:90778636-90778655 Msa0386940:intron 35.0%
AAAATTAAGGAGAAGCTTCC+AGG - chr3_1:90778649-90778668 Msa0386940:intron 35.0%
!!! AGGAGAGAAGAAAGGTATTT+TGG - chr3_1:90778771-90778790 Msa0386940:CDS 35.0%
AAGATCAAAGAGAAGATACC+TGG - chr3_1:90778796-90778815 Msa0386940:CDS 35.0%
AGACAACAAAGATCATCACA+AGG - chr3_1:90778849-90778868 Msa0386940:CDS 35.0%
AAAGCCACAAAACAACACAA+TGG + chr3_1:90778906-90778925 None:intergenic 35.0%
!!! ATTGTGTTGTTTTGTGGCTT+TGG - chr3_1:90778905-90778924 Msa0386940:CDS 35.0%
!!! TTGTGTTGTTTTGTGGCTTT+GGG - chr3_1:90778906-90778925 Msa0386940:CDS 35.0%
CTGAAACAGAGATCAAAGAC+AGG - chr3_1:90778086-90778105 Msa0386940:three_prime_UTR 40.0%
GAAACAGAGATCAAAGACAG+GGG - chr3_1:90778088-90778107 Msa0386940:three_prime_UTR 40.0%
TCTTCTACTTTGGTCTCTGA+TGG + chr3_1:90778220-90778239 None:intergenic 40.0%
AGCTTGAAGAGCTATCAGAT+CGG + chr3_1:90778291-90778310 None:intergenic 40.0%
GATTGAACGTAGTGTCAACA+AGG + chr3_1:90778400-90778419 None:intergenic 40.0%
TATGCATGTATAGTCGAGTG+AGG - chr3_1:90778486-90778505 Msa0386940:CDS 40.0%
AGAAAAGAAGGAGAAGAAGG+AGG - chr3_1:90778546-90778565 Msa0386940:intron 40.0%
TGAAGAGAAGAAAGGTTTCC+TGG - chr3_1:90778624-90778643 Msa0386940:intron 40.0%
! GCTTCTCCTTAATTTTGTCC+AGG + chr3_1:90778645-90778664 None:intergenic 40.0%
ACAACAGCTAGTCATGATCA+AGG - chr3_1:90778751-90778770 Msa0386940:CDS 40.0%
CATGATCAAGGAGAGAAGAA+AGG - chr3_1:90778763-90778782 Msa0386940:CDS 40.0%
CATGTTCAGTAGCAGTCTTA+GGG + chr3_1:90778828-90778847 None:intergenic 40.0%
TCATGTTCAGTAGCAGTCTT+AGG + chr3_1:90778829-90778848 None:intergenic 40.0%
!!! CGATCCATTGTGTTGTTTTG+TGG - chr3_1:90778899-90778918 Msa0386940:CDS 40.0%
!!! TGTGTTGTTTTGTGGCTTTG+GGG - chr3_1:90778907-90778926 Msa0386940:CDS 40.0%
CTGAAACAGAGATCAAAGAC+AGG - chr3_1:90778086-90778105 Msa0386940:three_prime_UTR 40.0%
GAAACAGAGATCAAAGACAG+GGG - chr3_1:90778088-90778107 Msa0386940:three_prime_UTR 40.0%
TCTTCTACTTTGGTCTCTGA+TGG + chr3_1:90778220-90778239 None:intergenic 40.0%
AGCTTGAAGAGCTATCAGAT+CGG + chr3_1:90778291-90778310 None:intergenic 40.0%
GATTGAACGTAGTGTCAACA+AGG + chr3_1:90778400-90778419 None:intergenic 40.0%
TATGCATGTATAGTCGAGTG+AGG - chr3_1:90778486-90778505 Msa0386940:CDS 40.0%
AGAAAAGAAGGAGAAGAAGG+AGG - chr3_1:90778546-90778565 Msa0386940:intron 40.0%
TGAAGAGAAGAAAGGTTTCC+TGG - chr3_1:90778624-90778643 Msa0386940:intron 40.0%
! GCTTCTCCTTAATTTTGTCC+AGG + chr3_1:90778645-90778664 None:intergenic 40.0%
ACAACAGCTAGTCATGATCA+AGG - chr3_1:90778751-90778770 Msa0386940:CDS 40.0%
CATGATCAAGGAGAGAAGAA+AGG - chr3_1:90778763-90778782 Msa0386940:CDS 40.0%
CATGTTCAGTAGCAGTCTTA+GGG + chr3_1:90778828-90778847 None:intergenic 40.0%
TCATGTTCAGTAGCAGTCTT+AGG + chr3_1:90778829-90778848 None:intergenic 40.0%
!!! CGATCCATTGTGTTGTTTTG+TGG - chr3_1:90778899-90778918 Msa0386940:CDS 40.0%
!!! TGTGTTGTTTTGTGGCTTTG+GGG - chr3_1:90778907-90778926 Msa0386940:CDS 40.0%
GGAGAATCAGAACAAGTACG+AGG - chr3_1:90778045-90778064 Msa0386940:three_prime_UTR 45.0%
! CTCTGTTTCAGAGTTGGTTG+CGG + chr3_1:90778077-90778096 None:intergenic 45.0%
AAAGAAACACACCAGCCTCT+TGG - chr3_1:90778255-90778274 Msa0386940:CDS 45.0%
ATCGGTGAAGTTTCTCCAAG+AGG + chr3_1:90778273-90778292 None:intergenic 45.0%
!! GCAAGCACTGAAGAGAAGAA+AGG - chr3_1:90778616-90778635 Msa0386940:intron 45.0%
! TCGTCAGTTTTCTTGTGTCC+TGG + chr3_1:90778670-90778689 None:intergenic 45.0%
! GTTGTTGTTGTCTCAGCAGA+TGG + chr3_1:90778733-90778752 None:intergenic 45.0%
!!! GTGTTGTTTTGTGGCTTTGG+GGG - chr3_1:90778908-90778927 Msa0386940:CDS 45.0%
GGAGAATCAGAACAAGTACG+AGG - chr3_1:90778045-90778064 Msa0386940:three_prime_UTR 45.0%
! CTCTGTTTCAGAGTTGGTTG+CGG + chr3_1:90778077-90778096 None:intergenic 45.0%
AAAGAAACACACCAGCCTCT+TGG - chr3_1:90778255-90778274 Msa0386940:CDS 45.0%
ATCGGTGAAGTTTCTCCAAG+AGG + chr3_1:90778273-90778292 None:intergenic 45.0%
!! GCAAGCACTGAAGAGAAGAA+AGG - chr3_1:90778616-90778635 Msa0386940:intron 45.0%
! TCGTCAGTTTTCTTGTGTCC+TGG + chr3_1:90778670-90778689 None:intergenic 45.0%
! GTTGTTGTTGTCTCAGCAGA+TGG + chr3_1:90778733-90778752 None:intergenic 45.0%
!!! GTGTTGTTTTGTGGCTTTGG+GGG - chr3_1:90778908-90778927 Msa0386940:CDS 45.0%
! TGTTTCAGAGTTGGTTGCGG+TGG + chr3_1:90778074-90778093 None:intergenic 50.0%
GTTGCAACAGCATCCTCTTG+AGG + chr3_1:90778163-90778182 None:intergenic 50.0%
GTGAAGTTTCTCCAAGAGGC+TGG + chr3_1:90778269-90778288 None:intergenic 50.0%
GCATGTATAGTCGAGTGAGG+AGG - chr3_1:90778489-90778508 Msa0386940:CDS 50.0%
TCGAGTGAGGAGGAAGTTGA+TGG - chr3_1:90778499-90778518 Msa0386940:CDS 50.0%
!! AGGAGGAAGTTGATGGAGAG+AGG - chr3_1:90778506-90778525 Msa0386940:CDS 50.0%
!! AGGAAGTTGATGGAGAGAGG+AGG - chr3_1:90778509-90778528 Msa0386940:CDS 50.0%
ACAGCAGGAGCAACAACAAC+AGG + chr3_1:90778709-90778728 None:intergenic 50.0%
GCAGTCTTAGGGTGATAACC+AGG + chr3_1:90778817-90778836 None:intergenic 50.0%
! TGTTTCAGAGTTGGTTGCGG+TGG + chr3_1:90778074-90778093 None:intergenic 50.0%
GTTGCAACAGCATCCTCTTG+AGG + chr3_1:90778163-90778182 None:intergenic 50.0%
GTGAAGTTTCTCCAAGAGGC+TGG + chr3_1:90778269-90778288 None:intergenic 50.0%
GCATGTATAGTCGAGTGAGG+AGG - chr3_1:90778489-90778508 Msa0386940:CDS 50.0%
TCGAGTGAGGAGGAAGTTGA+TGG - chr3_1:90778499-90778518 Msa0386940:CDS 50.0%
!! AGGAGGAAGTTGATGGAGAG+AGG - chr3_1:90778506-90778525 Msa0386940:CDS 50.0%
!! AGGAAGTTGATGGAGAGAGG+AGG - chr3_1:90778509-90778528 Msa0386940:CDS 50.0%
ACAGCAGGAGCAACAACAAC+AGG + chr3_1:90778709-90778728 None:intergenic 50.0%
GCAGTCTTAGGGTGATAACC+AGG + chr3_1:90778817-90778836 None:intergenic 50.0%
GGAGCAACAACAACAGGTGG+TGG + chr3_1:90778703-90778722 None:intergenic 55.0%
GCAGGAGCAACAACAACAGG+TGG + chr3_1:90778706-90778725 None:intergenic 55.0%
GGAGCAACAACAACAGGTGG+TGG + chr3_1:90778703-90778722 None:intergenic 55.0%
GCAGGAGCAACAACAACAGG+TGG + chr3_1:90778706-90778725 None:intergenic 55.0%
GTCTCAGCAGATGGCACAGC+AGG + chr3_1:90778724-90778743 None:intergenic 60.0%
GTCTCAGCAGATGGCACAGC+AGG + chr3_1:90778724-90778743 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 90777866 90779163 90777866 ID=Msa0386940;Name=Msa0386940
chr3_1 mRNA 90777866 90779163 90777866 ID=Msa0386940-mRNA-1;Parent=Msa0386940;Name=Msa0386940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=171|1|1|1|1|1|2|272|222
chr3_1 exon 90777866 90778530 90777866 ID=Msa0386940-mRNA-1:exon:25129;Parent=Msa0386940-mRNA-1
chr3_1 exon 90778717 90779163 90778717 ID=Msa0386940-mRNA-1:exon:25128;Parent=Msa0386940-mRNA-1
chr3_1 five_prime_UTR 90778993 90779163 90778993 ID=Msa0386940-mRNA-1:five_prime_utr;Parent=Msa0386940-mRNA-1
chr3_1 CDS 90778717 90778992 90778717 ID=Msa0386940-mRNA-1:cds;Parent=Msa0386940-mRNA-1
chr3_1 CDS 90778138 90778530 90778138 ID=Msa0386940-mRNA-1:cds;Parent=Msa0386940-mRNA-1
chr3_1 three_prime_UTR 90777866 90778137 90777866 ID=Msa0386940-mRNA-1:three_prime_utr;Parent=Msa0386940-mRNA-1
Gene Sequence

>Msa0386940

ATGGCTGAGGAGAATCAGAACAAGTACGAGGAAACCACCGCAACCAACTCTGAAACAGAGATCAAAGACAGGGGTGTTTTTGATTTTCTAGGTGGTAAGAAAAAGGATGAAGAACATATTAAGCCTCAAGAGGATGCTGTTGCAACTGATTTTAGTCACAAGGTGACTTTGTATGAAGCTCCATCAGAGACCAAAGTAGAAGAAAAAGAAGAAGGTGAAAAGAAACACACCAGCCTCTTGGAGAAACTTCACCGATCTGATAGCTCTTCAAGCTCTTCGAGTGAGGAGGAAGTTGATGGAGAGAGGAGGAAAAAGAAGAAGAAAGAAAAGAAGGAGAAGAAGGAGGACACATCAGTGCCAGTAGAGAAAGTTGATGTTGTTGATGGAACAACAGCAAGCACTGAAGAGAAGAAAGGTTTCCTGGACAAAATTAAGGAGAAGCTTCCAGGACACAAGAAAACTGACGATGTAACAACTCCACCACCTGTTGTTGTTGCTCCTGCTGTGCCATCTGCTGAGACAACAACAACAACAGCTAGTCATGATCAAGGAGAGAAGAAAGGTATTTTGGAAAAGATCAAAGAGAAGATACCTGGTTATCACCCTAAGACTGCTACTGAACATGAAGACAACAAAGATCATCACAAGGATGAGACTACTTCTCATTGA
Protein sequence

>Msa0386940

MAEENQNKYEETTATNSETEIKDRGVFDFLGGKKKDEEHIKPQEDAVATDFSHKVTLYEAPSETKVEEKEEGEKKHTSLLEKLHRSDSSSSSSSEEEVDGERRKKKKKEKKEKKEDTSVPVEKVDVVDGTTASTEEKKGFLDKIKEKLPGHKKTDDVTTPPPVVVAPAVPSAETTTTTASHDQGEKKGILEKIKEKIPGYHPKTATEHEDNKDHHKDETTSH*