Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804810 | XP_003589014.1 | 91.615 | 322 | 26 | 1 | 1 | 322 | 1 | 321 | 0.0 | 598 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804810 | sp|Q9FFJ8|LIMYB_ARATH | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 1.02e-22 | 101 |
| Msa0804810 | sp|Q9FFJ8|LIMYB_ARATH | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 3.42e-16 | 82.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804810 | G7IB81 | 91.615 | 322 | 26 | 1 | 1 | 322 | 1 | 321 | 0.0 | 598 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031520 | Msa0804810 | 0.922967 | 4.930832e-89 | -8.615850e-47 |
| Msa0602980 | Msa0804810 | 0.891767 | 2.939731e-74 | -8.615850e-47 |
| Msa0645300 | Msa0804810 | 0.841308 | 5.142093e-58 | -8.615850e-47 |
| Msa0804810 | Msa0944610 | 0.805801 | 1.120215e-49 | -8.615850e-47 |
| Msa0804810 | Msa0948320 | 0.873412 | 1.500813e-67 | -8.615850e-47 |
| Msa0804810 | Msa1000930 | 0.805572 | 1.251127e-49 | -8.615850e-47 |
| Msa0804810 | Msa1119930 | 0.802158 | 6.406189e-49 | -8.615850e-47 |
| Msa0804810 | Msa1142670 | 0.802164 | 6.389245e-49 | -8.615850e-47 |
| Msa0804810 | Msa1323690 | 0.803505 | 3.376150e-49 | -8.615850e-47 |
| Msa0804810 | Msa1331080 | 0.809169 | 2.161098e-50 | -8.615850e-47 |
| Msa0804810 | Msa1366970 | 0.803898 | 2.797600e-49 | -8.615850e-47 |
| Msa0804810 | Msa1388160 | 0.821452 | 4.007708e-53 | -8.615850e-47 |
| Msa0804810 | Msa1454450 | 0.805457 | 1.322603e-49 | -8.615850e-47 |
| Msa0135660 | Msa0804810 | 0.804334 | 2.270222e-49 | -8.615850e-47 |
| Msa0198910 | Msa0804810 | 0.811628 | 6.365528e-51 | -8.615850e-47 |
| Msa0413410 | Msa0804810 | 0.812793 | 3.544824e-51 | -8.615850e-47 |
| Msa0477310 | Msa0804810 | 0.800606 | 1.332109e-48 | -8.615850e-47 |
| Msa0251640 | Msa0804810 | 0.837408 | 5.291745e-57 | -8.615850e-47 |
| Msa0490140 | Msa0804810 | 0.842550 | 2.415261e-58 | -8.615850e-47 |
| Msa0514320 | Msa0804810 | 0.861739 | 8.299841e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804810 | MtrunA17_Chr2g0285481 | 62.963 | 324 | 114 | 4 | 2 | 321 | 1 | 322 | 8.73e-143 | 406 |
| Msa0804810 | MtrunA17_Chr1g0172741 | 62.346 | 324 | 116 | 4 | 2 | 321 | 1 | 322 | 2.22e-141 | 402 |
| Msa0804810 | MtrunA17_Chr8g0334551 | 57.012 | 328 | 134 | 2 | 1 | 321 | 1 | 328 | 6.95e-129 | 371 |
| Msa0804810 | MtrunA17_Chr2g0321391 | 67.213 | 244 | 77 | 2 | 79 | 321 | 3 | 244 | 8.23e-116 | 334 |
| Msa0804810 | MtrunA17_Chr5g0422701 | 65.174 | 201 | 67 | 2 | 122 | 321 | 14 | 212 | 3.49e-87 | 261 |
| Msa0804810 | MtrunA17_Chr2g0295811 | 41.176 | 221 | 112 | 6 | 119 | 321 | 10 | 230 | 1.83e-43 | 149 |
| Msa0804810 | MtrunA17_Chr5g0422691 | 63.043 | 92 | 33 | 1 | 13 | 103 | 14 | 105 | 3.40e-35 | 124 |
| Msa0804810 | MtrunA17_Chr2g0295611 | 62.500 | 96 | 35 | 1 | 100 | 194 | 1 | 96 | 3.24e-33 | 118 |
| Msa0804810 | MtrunA17_Chr8g0362511 | 27.508 | 309 | 189 | 8 | 21 | 310 | 67 | 359 | 3.58e-27 | 109 |
| Msa0804810 | MtrunA17_Chr5g0402821 | 29.114 | 316 | 194 | 9 | 22 | 315 | 16 | 323 | 2.43e-26 | 106 |
| Msa0804810 | MtrunA17_Chr3g0113081 | 38.158 | 152 | 85 | 2 | 22 | 173 | 185 | 327 | 4.96e-25 | 105 |
| Msa0804810 | MtrunA17_Chr3g0113081 | 29.773 | 309 | 155 | 9 | 12 | 311 | 373 | 628 | 4.94e-24 | 102 |
| Msa0804810 | MtrunA17_Chr3g0113081 | 35.821 | 134 | 79 | 2 | 11 | 144 | 3 | 129 | 4.36e-17 | 82.0 |
| Msa0804810 | MtrunA17_Chr5g0405761 | 27.036 | 307 | 178 | 7 | 19 | 312 | 47 | 320 | 3.79e-23 | 97.8 |
| Msa0804810 | MtrunA17_Chr6g0469501 | 63.793 | 58 | 21 | 0 | 264 | 321 | 1 | 58 | 7.98e-22 | 87.0 |
| Msa0804810 | MtrunA17_Chr8g0360271 | 25.256 | 293 | 183 | 11 | 33 | 310 | 21 | 292 | 6.44e-15 | 73.9 |
| Msa0804810 | MtrunA17_Chr1g0176881 | 29.412 | 136 | 95 | 1 | 21 | 156 | 21 | 155 | 6.89e-15 | 75.5 |
| Msa0804810 | MtrunA17_Chr1g0176881 | 29.655 | 145 | 99 | 2 | 2 | 146 | 175 | 316 | 7.62e-15 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804810 | AT5G05800.1 | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 1.04e-23 | 101 |
| Msa0804810 | AT5G05800.1 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 3.47e-17 | 82.4 |
| Msa0804810 | AT5G05800.5 | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 1.04e-23 | 101 |
| Msa0804810 | AT5G05800.5 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 3.47e-17 | 82.4 |
| Msa0804810 | AT5G05800.3 | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 1.04e-23 | 101 |
| Msa0804810 | AT5G05800.3 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 3.47e-17 | 82.4 |
| Msa0804810 | AT5G05800.2 | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 1.04e-23 | 101 |
| Msa0804810 | AT5G05800.2 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 3.47e-17 | 82.4 |
| Msa0804810 | AT5G05800.4 | 25.237 | 317 | 212 | 6 | 6 | 322 | 156 | 447 | 1.04e-23 | 101 |
| Msa0804810 | AT5G05800.4 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 3.47e-17 | 82.4 |
| Msa0804810 | AT3G11290.2 | 27.333 | 300 | 195 | 8 | 20 | 310 | 163 | 448 | 1.52e-18 | 86.3 |
| Msa0804810 | AT3G11290.1 | 27.333 | 300 | 195 | 8 | 20 | 310 | 163 | 448 | 1.52e-18 | 86.3 |
| Msa0804810 | AT2G24960.1 | 29.197 | 137 | 96 | 1 | 8 | 144 | 155 | 290 | 4.38e-15 | 76.6 |
| Msa0804810 | AT2G24960.1 | 26.667 | 135 | 98 | 1 | 20 | 154 | 10 | 143 | 7.10e-11 | 63.9 |
| Msa0804810 | AT2G24960.2 | 29.197 | 137 | 96 | 1 | 8 | 144 | 155 | 290 | 4.97e-15 | 76.3 |
| Msa0804810 | AT2G24960.2 | 27.972 | 143 | 102 | 1 | 12 | 154 | 314 | 455 | 1.63e-12 | 68.9 |
| Msa0804810 | AT2G24960.2 | 26.667 | 135 | 98 | 1 | 20 | 154 | 10 | 143 | 8.58e-11 | 63.5 |
| Msa0804810 | AT3G11310.1 | 33.566 | 143 | 89 | 2 | 20 | 157 | 171 | 312 | 3.27e-13 | 70.5 |
| Msa0804810 | AT4G02210.1 | 27.673 | 159 | 113 | 2 | 13 | 170 | 2 | 159 | 1.20e-11 | 65.9 |
| Msa0804810 | AT4G02210.2 | 27.673 | 159 | 113 | 2 | 13 | 170 | 2 | 159 | 1.20e-11 | 65.9 |
| Msa0804810 | AT2G19220.1 | 26.019 | 319 | 198 | 12 | 9 | 317 | 149 | 439 | 9.38e-11 | 62.8 |
Find 72 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGCATGGTATAACTTATT+TGG | 0.134716 | 5_3:-20969542 | Msa0804810:CDS |
| CAACTGAATTTGGAAATATT+TGG | 0.205915 | 5_3:-20969138 | Msa0804810:CDS |
| GTTGGAGCAACAACTGAATT+TGG | 0.213211 | 5_3:-20969148 | Msa0804810:CDS |
| GGCAGAAAACAAAAGCTATT+TGG | 0.232374 | 5_3:-20969751 | Msa0804810:CDS |
| AACTTATTTGGGAGAGAAAC+TGG | 0.287945 | 5_3:-20969530 | Msa0804810:CDS |
| TTGGGAGAGAAACTGGATTA+GGG | 0.298488 | 5_3:-20969523 | Msa0804810:CDS |
| TTTGGGAGAGAAACTGGATT+AGG | 0.315464 | 5_3:-20969524 | Msa0804810:CDS |
| GAAATAAACATCTCCCTTGC+AGG | 0.323302 | 5_3:+20968848 | None:intergenic |
| AAACTTTGTGAAAGCATGTT+TGG | 0.334075 | 5_3:-20969711 | Msa0804810:CDS |
| GCAGAAAACAAAAGCTATTT+GGG | 0.339319 | 5_3:-20969750 | Msa0804810:CDS |
| TGTATTACATACCAGTTGTT+TGG | 0.352266 | 5_3:+20969451 | None:intergenic |
| GAGCATGGTATAACTTATTT+GGG | 0.363157 | 5_3:-20969541 | Msa0804810:CDS |
| TTCAAGGATGTAGTGGCTAA+TGG | 0.366838 | 5_3:-20969289 | Msa0804810:CDS |
| CAGAGGAGAAGAGGTTGAAT+TGG | 0.373243 | 5_3:-20968814 | Msa0804810:CDS |
| GAAAAGTGTGGTTAACTCAT+TGG | 0.391432 | 5_3:+20969309 | None:intergenic |
| GTTCGATTTCATAATTTAAC+CGG | 0.395127 | 5_3:-20969623 | Msa0804810:CDS |
| TTGGTCTCCCACCACTCATC+AGG | 0.410369 | 5_3:+20969470 | None:intergenic |
| GTTCCTCCTCACCTAGTGAT+GGG | 0.415978 | 5_3:-20969775 | Msa0804810:CDS |
| AAAAGGGTGGACAAATATTA+GGG | 0.422862 | 5_3:-20969645 | Msa0804810:CDS |
| GGTTCCTCCTCACCTAGTGA+TGG | 0.438340 | 5_3:-20969776 | Msa0804810:CDS |
| TTCCTCCTCACCTAGTGATG+GGG | 0.476214 | 5_3:-20969774 | Msa0804810:CDS |
| AGAAGGCTCAACTAAAGAAT+AGG | 0.479515 | 5_3:-20969589 | Msa0804810:CDS |
| ATGATAGTCTGAGAAAGGAT+TGG | 0.481318 | 5_3:-20969565 | Msa0804810:CDS |
| TCCTCCTCACCTAGTGATGG+GGG | 0.484199 | 5_3:-20969773 | Msa0804810:CDS |
| GTGGTTAACTCATTGGCAAA+TGG | 0.488688 | 5_3:+20969316 | None:intergenic |
| GCTGCGGGTAATGCATCTAT+TGG | 0.495551 | 5_3:-20968959 | Msa0804810:CDS |
| GATGAGGCAGTGGCTGTAGA+AGG | 0.502147 | 5_3:-20969196 | Msa0804810:CDS |
| AGCCTTCTCATACTTCAGTC+CGG | 0.504703 | 5_3:+20969604 | None:intergenic |
| CGTACCAACACGTTCTCCCT+TGG | 0.505137 | 5_3:+20969679 | None:intergenic |
| TAGGTATGATAGTCTGAGAA+AGG | 0.514046 | 5_3:-20969570 | Msa0804810:CDS |
| TGCTGATGTTTAAGCCTGCA+AGG | 0.517021 | 5_3:-20968862 | Msa0804810:CDS |
| TGGCTAATGGAGAGTACACT+TGG | 0.522261 | 5_3:-20969276 | Msa0804810:CDS |
| GCAGTGGCTGTAGAAGGATC+TGG | 0.527670 | 5_3:-20969190 | Msa0804810:CDS |
| CTTCTCCTCTGAACCTCGTA+GGG | 0.535159 | 5_3:+20968826 | None:intergenic |
| GTGGTGGGAGACCAAACAAC+TGG | 0.536532 | 5_3:-20969462 | Msa0804810:intron |
| AGGTTAGTCATGAACGGCAG+TGG | 0.537233 | 5_3:+20968770 | None:intergenic |
| TATTTCCCTACGAGGTTCAG+AGG | 0.555424 | 5_3:-20968831 | Msa0804810:CDS |
| GGAGAGAAACTGGATTAGGG+TGG | 0.557144 | 5_3:-20969520 | Msa0804810:CDS |
| ATCATTTGAGACTTCATCCA+TGG | 0.558263 | 5_3:+20968913 | None:intergenic |
| GTCAAAAGAGTGGTGAGAAG+AGG | 0.562252 | 5_3:-20969090 | Msa0804810:CDS |
| CATGACTAACCTGTGTGACT+AGG | 0.562786 | 5_3:-20968759 | None:intergenic |
| TACGAGGTTCAGAGGAGAAG+AGG | 0.567800 | 5_3:-20968823 | Msa0804810:CDS |
| CGTTCTCGCAATGATGCTGC+GGG | 0.569360 | 5_3:-20968974 | Msa0804810:CDS |
| ATGTTTGGAGCAAGTCTCCA+AGG | 0.570714 | 5_3:-20969696 | Msa0804810:CDS |
| TACACTTGGGCACCATCATG+TGG | 0.573130 | 5_3:-20969262 | Msa0804810:CDS |
| TCGTTCTCGCAATGATGCTG+CGG | 0.583184 | 5_3:-20968975 | Msa0804810:CDS |
| TGCATCTATTGGTGAAGTGA+TGG | 0.591393 | 5_3:-20968948 | Msa0804810:CDS |
| GCTGATGTTTAAGCCTGCAA+GGG | 0.594722 | 5_3:-20968861 | Msa0804810:CDS |
| TCTTCTCCTCTGAACCTCGT+AGG | 0.595412 | 5_3:+20968825 | None:intergenic |
| GATAGCGAGGATGCAAGTGT+TGG | 0.599986 | 5_3:-20969166 | Msa0804810:CDS |
| GATGGCAATACCCCACATGA+TGG | 0.601622 | 5_3:+20969250 | None:intergenic |
| CCTCCTCACCTAGTGATGGG+GGG | 0.608278 | 5_3:-20969772 | Msa0804810:CDS |
| TGAGAAAGGATTGGAGAGCA+TGG | 0.612846 | 5_3:-20969556 | Msa0804810:CDS |
| GCTACAACAGTGTTGTTCAC+AGG | 0.614063 | 5_3:+20969494 | None:intergenic |
| AGAAGGATCTGGCGATAGCG+AGG | 0.624952 | 5_3:-20969179 | Msa0804810:CDS |
| AACCGGACTGAAGTATGAGA+AGG | 0.626830 | 5_3:-20969606 | Msa0804810:CDS |
| ACACTTGGGCACCATCATGT+GGG | 0.626839 | 5_3:-20969261 | Msa0804810:CDS |
| CACTACATCCTTGAAAAGTG+TGG | 0.627204 | 5_3:+20969297 | None:intergenic |
| GGTTAGTCATGAACGGCAGT+GGG | 0.628971 | 5_3:+20968771 | None:intergenic |
| AAAACTGATGGTCAAAAGAG+TGG | 0.632803 | 5_3:-20969100 | Msa0804810:CDS |
| TTGTAGCACCTGATGAGTGG+TGG | 0.632872 | 5_3:-20969478 | Msa0804810:CDS |
| TCACACAGGTTAGTCATGAA+CGG | 0.640237 | 5_3:+20968764 | None:intergenic |
| CCATTACATCCTAGTCACAC+AGG | 0.643132 | 5_3:+20968750 | None:intergenic |
| GAGAGAAACTGGATTAGGGT+GGG | 0.643865 | 5_3:-20969519 | Msa0804810:CDS |
| GTCTCCAAGGGAGAACGTGT+TGG | 0.644338 | 5_3:-20969683 | Msa0804810:CDS |
| CACTTGGGCACCATCATGTG+GGG | 0.646121 | 5_3:-20969260 | Msa0804810:CDS |
| TGTTTGGAGCAAGTCTCCAA+GGG | 0.647436 | 5_3:-20969695 | Msa0804810:CDS |
| TGTAGCACCTGATGAGTGGT+GGG | 0.651018 | 5_3:-20969477 | Msa0804810:CDS |
| GATGGCTGAGCTTCACACCA+TGG | 0.663371 | 5_3:-20968930 | Msa0804810:CDS |
| GGCTAATGGAGAGTACACTT+GGG | 0.684848 | 5_3:-20969275 | Msa0804810:CDS |
| CTGTTGTAGCACCTGATGAG+TGG | 0.705267 | 5_3:-20969481 | Msa0804810:CDS |
| GAGATGTTTATTTCCCTACG+AGG | 0.736446 | 5_3:-20968839 | Msa0804810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCCTAAATTTTTCATAAAGA+GGG | + | chr5_3:20969216-20969235 | None:intergenic | 20.0% |
| !!! | TTCCTAAATTTTTCATAAAG+AGG | + | chr5_3:20969217-20969236 | None:intergenic | 20.0% |
| !! | TTATGAAAAATTTAGGAACA+AGG | - | chr5_3:20969219-20969238 | Msa0804810:CDS | 20.0% |
| !! | TATGAAAAATTTAGGAACAA+GGG | - | chr5_3:20969220-20969239 | Msa0804810:CDS | 20.0% |
| !!! | TCCTAAATTTTTCATAAAGA+GGG | + | chr5_3:20969216-20969235 | None:intergenic | 20.0% |
| !!! | TTCCTAAATTTTTCATAAAG+AGG | + | chr5_3:20969217-20969236 | None:intergenic | 20.0% |
| !! | TTATGAAAAATTTAGGAACA+AGG | - | chr5_3:20969219-20969238 | Msa0804810:CDS | 20.0% |
| !! | TATGAAAAATTTAGGAACAA+GGG | - | chr5_3:20969220-20969239 | Msa0804810:CDS | 20.0% |
| ! | AATACCAAGAAAAATGTTGT+GGG | - | chr5_3:20968766-20968785 | Msa0804810:CDS | 25.0% |
| ! | GTTCGATTTCATAATTTAAC+CGG | - | chr5_3:20968940-20968959 | Msa0804810:CDS | 25.0% |
| ! | ACCCTCTTTATGAAAAATTT+AGG | - | chr5_3:20969212-20969231 | Msa0804810:CDS | 25.0% |
| ! | ATGAAAAATTTAGGAACAAG+GGG | - | chr5_3:20969221-20969240 | Msa0804810:CDS | 25.0% |
| ! | CAACTGAATTTGGAAATATT+TGG | - | chr5_3:20969425-20969444 | Msa0804810:intron | 25.0% |
| ! | AATTCTTCACAAAAAACTGA+TGG | - | chr5_3:20969451-20969470 | Msa0804810:intron | 25.0% |
| ! | AATACCAAGAAAAATGTTGT+GGG | - | chr5_3:20968766-20968785 | Msa0804810:CDS | 25.0% |
| ! | GTTCGATTTCATAATTTAAC+CGG | - | chr5_3:20968940-20968959 | Msa0804810:CDS | 25.0% |
| ! | ACCCTCTTTATGAAAAATTT+AGG | - | chr5_3:20969212-20969231 | Msa0804810:CDS | 25.0% |
| ! | ATGAAAAATTTAGGAACAAG+GGG | - | chr5_3:20969221-20969240 | Msa0804810:CDS | 25.0% |
| ! | CAACTGAATTTGGAAATATT+TGG | - | chr5_3:20969425-20969444 | Msa0804810:intron | 25.0% |
| ! | AATTCTTCACAAAAAACTGA+TGG | - | chr5_3:20969451-20969470 | Msa0804810:intron | 25.0% |
| GAATACCAAGAAAAATGTTG+TGG | - | chr5_3:20968765-20968784 | Msa0804810:CDS | 30.0% | |
| GCAGAAAACAAAAGCTATTT+GGG | - | chr5_3:20968813-20968832 | Msa0804810:CDS | 30.0% | |
| ! | AAACTTTGTGAAAGCATGTT+TGG | - | chr5_3:20968852-20968871 | Msa0804810:CDS | 30.0% |
| ! | GTACGAGCTTTTCAAAAAAA+GGG | - | chr5_3:20968902-20968921 | Msa0804810:CDS | 30.0% |
| AAAAAGGGTGGACAAATATT+AGG | - | chr5_3:20968917-20968936 | Msa0804810:CDS | 30.0% | |
| AAAAGGGTGGACAAATATTA+GGG | - | chr5_3:20968918-20968937 | Msa0804810:CDS | 30.0% | |
| AGAGCATGGTATAACTTATT+TGG | - | chr5_3:20969021-20969040 | Msa0804810:CDS | 30.0% | |
| GAGCATGGTATAACTTATTT+GGG | - | chr5_3:20969022-20969041 | Msa0804810:CDS | 30.0% | |
| TGTATTACATACCAGTTGTT+TGG | + | chr5_3:20969115-20969134 | None:intergenic | 30.0% | |
| AACACGAGTATACATATCTA+AGG | + | chr5_3:20969158-20969177 | None:intergenic | 30.0% | |
| ! | TCATCATTTTCAAACACAGA+TGG | + | chr5_3:20969334-20969353 | None:intergenic | 30.0% |
| ! | TGATAATGATGATGATGATG+AGG | - | chr5_3:20969351-20969370 | Msa0804810:CDS | 30.0% |
| GAATACCAAGAAAAATGTTG+TGG | - | chr5_3:20968765-20968784 | Msa0804810:CDS | 30.0% | |
| GCAGAAAACAAAAGCTATTT+GGG | - | chr5_3:20968813-20968832 | Msa0804810:CDS | 30.0% | |
| ! | AAACTTTGTGAAAGCATGTT+TGG | - | chr5_3:20968852-20968871 | Msa0804810:CDS | 30.0% |
| ! | GTACGAGCTTTTCAAAAAAA+GGG | - | chr5_3:20968902-20968921 | Msa0804810:CDS | 30.0% |
| AAAAAGGGTGGACAAATATT+AGG | - | chr5_3:20968917-20968936 | Msa0804810:CDS | 30.0% | |
| AAAAGGGTGGACAAATATTA+GGG | - | chr5_3:20968918-20968937 | Msa0804810:CDS | 30.0% | |
| AGAGCATGGTATAACTTATT+TGG | - | chr5_3:20969021-20969040 | Msa0804810:CDS | 30.0% | |
| GAGCATGGTATAACTTATTT+GGG | - | chr5_3:20969022-20969041 | Msa0804810:CDS | 30.0% | |
| TGTATTACATACCAGTTGTT+TGG | + | chr5_3:20969115-20969134 | None:intergenic | 30.0% | |
| AACACGAGTATACATATCTA+AGG | + | chr5_3:20969158-20969177 | None:intergenic | 30.0% | |
| ! | TCATCATTTTCAAACACAGA+TGG | + | chr5_3:20969334-20969353 | None:intergenic | 30.0% |
| ! | TGATAATGATGATGATGATG+AGG | - | chr5_3:20969351-20969370 | Msa0804810:CDS | 30.0% |
| GGCAGAAAACAAAAGCTATT+TGG | - | chr5_3:20968812-20968831 | Msa0804810:CDS | 35.0% | |
| ! | GGTACGAGCTTTTCAAAAAA+AGG | - | chr5_3:20968901-20968920 | Msa0804810:CDS | 35.0% |
| AGAAGGCTCAACTAAAGAAT+AGG | - | chr5_3:20968974-20968993 | Msa0804810:CDS | 35.0% | |
| TAGGTATGATAGTCTGAGAA+AGG | - | chr5_3:20968993-20969012 | Msa0804810:CDS | 35.0% | |
| ATGATAGTCTGAGAAAGGAT+TGG | - | chr5_3:20968998-20969017 | Msa0804810:CDS | 35.0% | |
| AACTTATTTGGGAGAGAAAC+TGG | - | chr5_3:20969033-20969052 | Msa0804810:CDS | 35.0% | |
| GATGTGAGTTATGAAAATGC+AGG | - | chr5_3:20969186-20969205 | Msa0804810:CDS | 35.0% | |
| ! | GAAAAGTGTGGTTAACTCAT+TGG | + | chr5_3:20969257-20969276 | None:intergenic | 35.0% |
| ! | TGAGTTAACCACACTTTTCA+AGG | - | chr5_3:20969258-20969277 | Msa0804810:CDS | 35.0% |
| AAAACTGATGGTCAAAAGAG+TGG | - | chr5_3:20969463-20969482 | Msa0804810:CDS | 35.0% | |
| !!! | GCACTTGCTTTTTTCTTACT+TGG | + | chr5_3:20969523-20969542 | None:intergenic | 35.0% |
| ! | ATCATTTGAGACTTCATCCA+TGG | + | chr5_3:20969653-20969672 | None:intergenic | 35.0% |
| GGCAGAAAACAAAAGCTATT+TGG | - | chr5_3:20968812-20968831 | Msa0804810:CDS | 35.0% | |
| ! | GGTACGAGCTTTTCAAAAAA+AGG | - | chr5_3:20968901-20968920 | Msa0804810:CDS | 35.0% |
| AGAAGGCTCAACTAAAGAAT+AGG | - | chr5_3:20968974-20968993 | Msa0804810:CDS | 35.0% | |
| TAGGTATGATAGTCTGAGAA+AGG | - | chr5_3:20968993-20969012 | Msa0804810:CDS | 35.0% | |
| ATGATAGTCTGAGAAAGGAT+TGG | - | chr5_3:20968998-20969017 | Msa0804810:CDS | 35.0% | |
| AACTTATTTGGGAGAGAAAC+TGG | - | chr5_3:20969033-20969052 | Msa0804810:CDS | 35.0% | |
| GATGTGAGTTATGAAAATGC+AGG | - | chr5_3:20969186-20969205 | Msa0804810:CDS | 35.0% | |
| ! | GAAAAGTGTGGTTAACTCAT+TGG | + | chr5_3:20969257-20969276 | None:intergenic | 35.0% |
| ! | TGAGTTAACCACACTTTTCA+AGG | - | chr5_3:20969258-20969277 | Msa0804810:CDS | 35.0% |
| AAAACTGATGGTCAAAAGAG+TGG | - | chr5_3:20969463-20969482 | Msa0804810:CDS | 35.0% | |
| !!! | GCACTTGCTTTTTTCTTACT+TGG | + | chr5_3:20969523-20969542 | None:intergenic | 35.0% |
| ! | ATCATTTGAGACTTCATCCA+TGG | + | chr5_3:20969653-20969672 | None:intergenic | 35.0% |
| ! | GGAACCCACAACATTTTTCT+TGG | + | chr5_3:20968773-20968792 | None:intergenic | 40.0% |
| ! | CGAGCTTTTCAAAAAAAGGG+TGG | - | chr5_3:20968905-20968924 | Msa0804810:CDS | 40.0% |
| TTTGGGAGAGAAACTGGATT+AGG | - | chr5_3:20969039-20969058 | Msa0804810:CDS | 40.0% | |
| TTGGGAGAGAAACTGGATTA+GGG | - | chr5_3:20969040-20969059 | Msa0804810:CDS | 40.0% | |
| GTGGTTAACTCATTGGCAAA+TGG | + | chr5_3:20969250-20969269 | None:intergenic | 40.0% | |
| CACTACATCCTTGAAAAGTG+TGG | + | chr5_3:20969269-20969288 | None:intergenic | 40.0% | |
| !! | CACACTTTTCAAGGATGTAG+TGG | - | chr5_3:20969267-20969286 | Msa0804810:CDS | 40.0% |
| TTCAAGGATGTAGTGGCTAA+TGG | - | chr5_3:20969274-20969293 | Msa0804810:CDS | 40.0% | |
| GTTGGAGCAACAACTGAATT+TGG | - | chr5_3:20969415-20969434 | Msa0804810:intron | 40.0% | |
| TGCATCTATTGGTGAAGTGA+TGG | - | chr5_3:20969615-20969634 | Msa0804810:CDS | 40.0% | |
| GAAATAAACATCTCCCTTGC+AGG | + | chr5_3:20969718-20969737 | None:intergenic | 40.0% | |
| GAGATGTTTATTTCCCTACG+AGG | - | chr5_3:20969724-20969743 | Msa0804810:CDS | 40.0% | |
| ! | TCACACAGGTTAGTCATGAA+CGG | + | chr5_3:20969802-20969821 | None:intergenic | 40.0% |
| ! | GGAACCCACAACATTTTTCT+TGG | + | chr5_3:20968773-20968792 | None:intergenic | 40.0% |
| ! | CGAGCTTTTCAAAAAAAGGG+TGG | - | chr5_3:20968905-20968924 | Msa0804810:CDS | 40.0% |
| TTTGGGAGAGAAACTGGATT+AGG | - | chr5_3:20969039-20969058 | Msa0804810:CDS | 40.0% | |
| TTGGGAGAGAAACTGGATTA+GGG | - | chr5_3:20969040-20969059 | Msa0804810:CDS | 40.0% | |
| GTGGTTAACTCATTGGCAAA+TGG | + | chr5_3:20969250-20969269 | None:intergenic | 40.0% | |
| CACTACATCCTTGAAAAGTG+TGG | + | chr5_3:20969269-20969288 | None:intergenic | 40.0% | |
| !! | CACACTTTTCAAGGATGTAG+TGG | - | chr5_3:20969267-20969286 | Msa0804810:CDS | 40.0% |
| TTCAAGGATGTAGTGGCTAA+TGG | - | chr5_3:20969274-20969293 | Msa0804810:CDS | 40.0% | |
| GTTGGAGCAACAACTGAATT+TGG | - | chr5_3:20969415-20969434 | Msa0804810:intron | 40.0% | |
| TGCATCTATTGGTGAAGTGA+TGG | - | chr5_3:20969615-20969634 | Msa0804810:CDS | 40.0% | |
| GAAATAAACATCTCCCTTGC+AGG | + | chr5_3:20969718-20969737 | None:intergenic | 40.0% | |
| GAGATGTTTATTTCCCTACG+AGG | - | chr5_3:20969724-20969743 | Msa0804810:CDS | 40.0% | |
| ! | TCACACAGGTTAGTCATGAA+CGG | + | chr5_3:20969802-20969821 | None:intergenic | 40.0% |
| ! | ATGTTTGGAGCAAGTCTCCA+AGG | - | chr5_3:20968867-20968886 | Msa0804810:CDS | 45.0% |
| ! | TGTTTGGAGCAAGTCTCCAA+GGG | - | chr5_3:20968868-20968887 | Msa0804810:CDS | 45.0% |
| AACCGGACTGAAGTATGAGA+AGG | - | chr5_3:20968957-20968976 | Msa0804810:CDS | 45.0% | |
| AGCCTTCTCATACTTCAGTC+CGG | + | chr5_3:20968962-20968981 | None:intergenic | 45.0% | |
| TGAGAAAGGATTGGAGAGCA+TGG | - | chr5_3:20969007-20969026 | Msa0804810:CDS | 45.0% | |
| ! | GAGAGAAACTGGATTAGGGT+GGG | - | chr5_3:20969044-20969063 | Msa0804810:CDS | 45.0% |
| ! | GCTACAACAGTGTTGTTCAC+AGG | + | chr5_3:20969072-20969091 | None:intergenic | 45.0% |
| ! | TGGCTAATGGAGAGTACACT+TGG | - | chr5_3:20969287-20969306 | Msa0804810:CDS | 45.0% |
| ! | GGCTAATGGAGAGTACACTT+GGG | - | chr5_3:20969288-20969307 | Msa0804810:CDS | 45.0% |
| ! | TGATGATGATGATGAGGCAG+TGG | - | chr5_3:20969357-20969376 | Msa0804810:CDS | 45.0% |
| GTCAAAAGAGTGGTGAGAAG+AGG | - | chr5_3:20969473-20969492 | Msa0804810:CDS | 45.0% | |
| TGCTGATGTTTAAGCCTGCA+AGG | - | chr5_3:20969701-20969720 | Msa0804810:CDS | 45.0% | |
| GCTGATGTTTAAGCCTGCAA+GGG | - | chr5_3:20969702-20969721 | Msa0804810:CDS | 45.0% | |
| TATTTCCCTACGAGGTTCAG+AGG | - | chr5_3:20969732-20969751 | Msa0804810:CDS | 45.0% | |
| CAGAGGAGAAGAGGTTGAAT+TGG | - | chr5_3:20969749-20969768 | Msa0804810:CDS | 45.0% | |
| ! | ATGTTTGGAGCAAGTCTCCA+AGG | - | chr5_3:20968867-20968886 | Msa0804810:CDS | 45.0% |
| ! | TGTTTGGAGCAAGTCTCCAA+GGG | - | chr5_3:20968868-20968887 | Msa0804810:CDS | 45.0% |
| AACCGGACTGAAGTATGAGA+AGG | - | chr5_3:20968957-20968976 | Msa0804810:CDS | 45.0% | |
| AGCCTTCTCATACTTCAGTC+CGG | + | chr5_3:20968962-20968981 | None:intergenic | 45.0% | |
| TGAGAAAGGATTGGAGAGCA+TGG | - | chr5_3:20969007-20969026 | Msa0804810:CDS | 45.0% | |
| ! | GAGAGAAACTGGATTAGGGT+GGG | - | chr5_3:20969044-20969063 | Msa0804810:CDS | 45.0% |
| ! | GCTACAACAGTGTTGTTCAC+AGG | + | chr5_3:20969072-20969091 | None:intergenic | 45.0% |
| ! | TGGCTAATGGAGAGTACACT+TGG | - | chr5_3:20969287-20969306 | Msa0804810:CDS | 45.0% |
| ! | GGCTAATGGAGAGTACACTT+GGG | - | chr5_3:20969288-20969307 | Msa0804810:CDS | 45.0% |
| ! | TGATGATGATGATGAGGCAG+TGG | - | chr5_3:20969357-20969376 | Msa0804810:CDS | 45.0% |
| GTCAAAAGAGTGGTGAGAAG+AGG | - | chr5_3:20969473-20969492 | Msa0804810:CDS | 45.0% | |
| TGCTGATGTTTAAGCCTGCA+AGG | - | chr5_3:20969701-20969720 | Msa0804810:CDS | 45.0% | |
| GCTGATGTTTAAGCCTGCAA+GGG | - | chr5_3:20969702-20969721 | Msa0804810:CDS | 45.0% | |
| TATTTCCCTACGAGGTTCAG+AGG | - | chr5_3:20969732-20969751 | Msa0804810:CDS | 45.0% | |
| CAGAGGAGAAGAGGTTGAAT+TGG | - | chr5_3:20969749-20969768 | Msa0804810:CDS | 45.0% | |
| GTTCCTCCTCACCTAGTGAT+GGG | - | chr5_3:20968788-20968807 | Msa0804810:CDS | 50.0% | |
| TTCCTCCTCACCTAGTGATG+GGG | - | chr5_3:20968789-20968808 | Msa0804810:CDS | 50.0% | |
| ! | GGAGAGAAACTGGATTAGGG+TGG | - | chr5_3:20969043-20969062 | Msa0804810:CDS | 50.0% |
| CTGTTGTAGCACCTGATGAG+TGG | - | chr5_3:20969082-20969101 | Msa0804810:CDS | 50.0% | |
| TTGTAGCACCTGATGAGTGG+TGG | - | chr5_3:20969085-20969104 | Msa0804810:CDS | 50.0% | |
| TGTAGCACCTGATGAGTGGT+GGG | - | chr5_3:20969086-20969105 | Msa0804810:CDS | 50.0% | |
| TACACTTGGGCACCATCATG+TGG | - | chr5_3:20969301-20969320 | Msa0804810:CDS | 50.0% | |
| ACACTTGGGCACCATCATGT+GGG | - | chr5_3:20969302-20969321 | Msa0804810:CDS | 50.0% | |
| GATGGCAATACCCCACATGA+TGG | + | chr5_3:20969316-20969335 | None:intergenic | 50.0% | |
| GATAGCGAGGATGCAAGTGT+TGG | - | chr5_3:20969397-20969416 | Msa0804810:intron | 50.0% | |
| TCGTTCTCGCAATGATGCTG+CGG | - | chr5_3:20969588-20969607 | Msa0804810:CDS | 50.0% | |
| GCTGCGGGTAATGCATCTAT+TGG | - | chr5_3:20969604-20969623 | Msa0804810:CDS | 50.0% | |
| CTTCTCCTCTGAACCTCGTA+GGG | + | chr5_3:20969740-20969759 | None:intergenic | 50.0% | |
| TCTTCTCCTCTGAACCTCGT+AGG | + | chr5_3:20969741-20969760 | None:intergenic | 50.0% | |
| TACGAGGTTCAGAGGAGAAG+AGG | - | chr5_3:20969740-20969759 | Msa0804810:CDS | 50.0% | |
| ! | GGTTAGTCATGAACGGCAGT+GGG | + | chr5_3:20969795-20969814 | None:intergenic | 50.0% |
| ! | AGGTTAGTCATGAACGGCAG+TGG | + | chr5_3:20969796-20969815 | None:intergenic | 50.0% |
| GTTCCTCCTCACCTAGTGAT+GGG | - | chr5_3:20968788-20968807 | Msa0804810:CDS | 50.0% | |
| TTCCTCCTCACCTAGTGATG+GGG | - | chr5_3:20968789-20968808 | Msa0804810:CDS | 50.0% | |
| ! | GGAGAGAAACTGGATTAGGG+TGG | - | chr5_3:20969043-20969062 | Msa0804810:CDS | 50.0% |
| CTGTTGTAGCACCTGATGAG+TGG | - | chr5_3:20969082-20969101 | Msa0804810:CDS | 50.0% | |
| TTGTAGCACCTGATGAGTGG+TGG | - | chr5_3:20969085-20969104 | Msa0804810:CDS | 50.0% | |
| TGTAGCACCTGATGAGTGGT+GGG | - | chr5_3:20969086-20969105 | Msa0804810:CDS | 50.0% | |
| TACACTTGGGCACCATCATG+TGG | - | chr5_3:20969301-20969320 | Msa0804810:CDS | 50.0% | |
| ACACTTGGGCACCATCATGT+GGG | - | chr5_3:20969302-20969321 | Msa0804810:CDS | 50.0% | |
| GATGGCAATACCCCACATGA+TGG | + | chr5_3:20969316-20969335 | None:intergenic | 50.0% | |
| GATAGCGAGGATGCAAGTGT+TGG | - | chr5_3:20969397-20969416 | Msa0804810:intron | 50.0% | |
| TCGTTCTCGCAATGATGCTG+CGG | - | chr5_3:20969588-20969607 | Msa0804810:CDS | 50.0% | |
| GCTGCGGGTAATGCATCTAT+TGG | - | chr5_3:20969604-20969623 | Msa0804810:CDS | 50.0% | |
| CTTCTCCTCTGAACCTCGTA+GGG | + | chr5_3:20969740-20969759 | None:intergenic | 50.0% | |
| TCTTCTCCTCTGAACCTCGT+AGG | + | chr5_3:20969741-20969760 | None:intergenic | 50.0% | |
| TACGAGGTTCAGAGGAGAAG+AGG | - | chr5_3:20969740-20969759 | Msa0804810:CDS | 50.0% | |
| ! | GGTTAGTCATGAACGGCAGT+GGG | + | chr5_3:20969795-20969814 | None:intergenic | 50.0% |
| ! | AGGTTAGTCATGAACGGCAG+TGG | + | chr5_3:20969796-20969815 | None:intergenic | 50.0% |
| GGTTCCTCCTCACCTAGTGA+TGG | - | chr5_3:20968787-20968806 | Msa0804810:CDS | 55.0% | |
| TCCTCCTCACCTAGTGATGG+GGG | - | chr5_3:20968790-20968809 | Msa0804810:CDS | 55.0% | |
| ! | GTTTTCTGCCCCCCATCACT+AGG | + | chr5_3:20968802-20968821 | None:intergenic | 55.0% |
| GTCTCCAAGGGAGAACGTGT+TGG | - | chr5_3:20968880-20968899 | Msa0804810:CDS | 55.0% | |
| CGTACCAACACGTTCTCCCT+TGG | + | chr5_3:20968887-20968906 | None:intergenic | 55.0% | |
| TTGGTCTCCCACCACTCATC+AGG | + | chr5_3:20969096-20969115 | None:intergenic | 55.0% | |
| ! | GTGGTGGGAGACCAAACAAC+TGG | - | chr5_3:20969101-20969120 | Msa0804810:CDS | 55.0% |
| CACTTGGGCACCATCATGTG+GGG | - | chr5_3:20969303-20969322 | Msa0804810:CDS | 55.0% | |
| GATGAGGCAGTGGCTGTAGA+AGG | - | chr5_3:20969367-20969386 | Msa0804810:intron | 55.0% | |
| GCAGTGGCTGTAGAAGGATC+TGG | - | chr5_3:20969373-20969392 | Msa0804810:intron | 55.0% | |
| AGAAGGATCTGGCGATAGCG+AGG | - | chr5_3:20969384-20969403 | Msa0804810:intron | 55.0% | |
| CGTTCTCGCAATGATGCTGC+GGG | - | chr5_3:20969589-20969608 | Msa0804810:CDS | 55.0% | |
| GATGGCTGAGCTTCACACCA+TGG | - | chr5_3:20969633-20969652 | Msa0804810:CDS | 55.0% | |
| GGTTCCTCCTCACCTAGTGA+TGG | - | chr5_3:20968787-20968806 | Msa0804810:CDS | 55.0% | |
| TCCTCCTCACCTAGTGATGG+GGG | - | chr5_3:20968790-20968809 | Msa0804810:CDS | 55.0% | |
| ! | GTTTTCTGCCCCCCATCACT+AGG | + | chr5_3:20968802-20968821 | None:intergenic | 55.0% |
| GTCTCCAAGGGAGAACGTGT+TGG | - | chr5_3:20968880-20968899 | Msa0804810:CDS | 55.0% | |
| CGTACCAACACGTTCTCCCT+TGG | + | chr5_3:20968887-20968906 | None:intergenic | 55.0% | |
| TTGGTCTCCCACCACTCATC+AGG | + | chr5_3:20969096-20969115 | None:intergenic | 55.0% | |
| ! | GTGGTGGGAGACCAAACAAC+TGG | - | chr5_3:20969101-20969120 | Msa0804810:CDS | 55.0% |
| CACTTGGGCACCATCATGTG+GGG | - | chr5_3:20969303-20969322 | Msa0804810:CDS | 55.0% | |
| GATGAGGCAGTGGCTGTAGA+AGG | - | chr5_3:20969367-20969386 | Msa0804810:intron | 55.0% | |
| GCAGTGGCTGTAGAAGGATC+TGG | - | chr5_3:20969373-20969392 | Msa0804810:intron | 55.0% | |
| AGAAGGATCTGGCGATAGCG+AGG | - | chr5_3:20969384-20969403 | Msa0804810:intron | 55.0% | |
| CGTTCTCGCAATGATGCTGC+GGG | - | chr5_3:20969589-20969608 | Msa0804810:CDS | 55.0% | |
| GATGGCTGAGCTTCACACCA+TGG | - | chr5_3:20969633-20969652 | Msa0804810:CDS | 55.0% | |
| ! | CCTCCTCACCTAGTGATGGG+GGG | - | chr5_3:20968791-20968810 | Msa0804810:CDS | 60.0% |
| ! | CCTCCTCACCTAGTGATGGG+GGG | - | chr5_3:20968791-20968810 | Msa0804810:CDS | 60.0% |
| CCCCCCATCACTAGGTGAGG+AGG | + | chr5_3:20968794-20968813 | None:intergenic | 65.0% | |
| CTGCCCCCCATCACTAGGTG+AGG | + | chr5_3:20968797-20968816 | None:intergenic | 65.0% | |
| CCCCCCATCACTAGGTGAGG+AGG | + | chr5_3:20968794-20968813 | None:intergenic | 65.0% | |
| CTGCCCCCCATCACTAGGTG+AGG | + | chr5_3:20968797-20968816 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 20968760 | 20969825 | 20968760 | ID=Msa0804810;Name=Msa0804810 |
| chr5_3 | mRNA | 20968760 | 20969825 | 20968760 | ID=Msa0804810-mRNA-1;Parent=Msa0804810;Name=Msa0804810-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|326 |
| chr5_3 | exon | 20969463 | 20969825 | 20969463 | ID=Msa0804810-mRNA-1:exon:8412;Parent=Msa0804810-mRNA-1 |
| chr5_3 | exon | 20968760 | 20969377 | 20968760 | ID=Msa0804810-mRNA-1:exon:8411;Parent=Msa0804810-mRNA-1 |
| chr5_3 | CDS | 20969463 | 20969825 | 20969463 | ID=Msa0804810-mRNA-1:cds;Parent=Msa0804810-mRNA-1 |
| chr5_3 | CDS | 20968760 | 20969377 | 20968760 | ID=Msa0804810-mRNA-1:cds;Parent=Msa0804810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
