Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031520 | sp|Q9FFJ8|LIMYB_ARATH | 25.157 | 318 | 212 | 6 | 6 | 323 | 156 | 447 | 8.49e-23 | 101 |
| Msa0031520 | sp|Q9FFJ8|LIMYB_ARATH | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 3.53e-16 | 82.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021210 | Msa0031520 | 0.812092 | 5.044967e-51 | -8.615850e-47 |
| Msa0031520 | Msa0089820 | 0.811359 | 7.282140e-51 | -8.615850e-47 |
| Msa0031520 | Msa0106710 | 0.805497 | 1.297148e-49 | -8.615850e-47 |
| Msa0031520 | Msa0114430 | 0.809748 | 1.623133e-50 | -8.615850e-47 |
| Msa0031520 | Msa0135660 | 0.843568 | 1.293474e-58 | -8.615850e-47 |
| Msa0031520 | Msa0167980 | 0.807486 | 4.938613e-50 | -8.615850e-47 |
| Msa0031520 | Msa0180500 | 0.804012 | 2.649297e-49 | -8.615850e-47 |
| Msa0031520 | Msa0198910 | 0.867732 | 1.101425e-65 | -8.615850e-47 |
| Msa0031520 | Msa0207350 | 0.814913 | 1.209194e-51 | -8.615850e-47 |
| Msa0031520 | Msa0207420 | 0.808959 | 2.396596e-50 | -8.615850e-47 |
| Msa0031520 | Msa0233080 | 0.813667 | 2.279249e-51 | -8.615850e-47 |
| Msa0031520 | Msa0251640 | 0.891285 | 4.568953e-74 | -8.615850e-47 |
| Msa0031520 | Msa0257490 | 0.817952 | 2.525149e-52 | -8.615850e-47 |
| Msa0031520 | Msa0259210 | 0.844030 | 9.727456e-59 | -8.615850e-47 |
| Msa0031520 | Msa0259220 | 0.801755 | 7.750917e-49 | -8.615850e-47 |
| Msa0031520 | Msa0271770 | 0.827327 | 1.663038e-54 | -8.615850e-47 |
| Msa0031520 | Msa0289330 | 0.809054 | 2.287569e-50 | -8.615850e-47 |
| Msa0031520 | Msa0336310 | 0.815498 | 8.962705e-52 | -8.615850e-47 |
| Msa0031520 | Msa0336320 | 0.848816 | 4.816319e-60 | -8.615850e-47 |
| Msa0031520 | Msa0343850 | 0.823641 | 1.241347e-53 | -8.615850e-47 |
| Msa0031520 | Msa0353540 | 0.806175 | 9.343958e-50 | -8.615850e-47 |
| Msa0031520 | Msa0381610 | -0.801922 | 7.164418e-49 | -8.615850e-47 |
| Msa0031520 | Msa0382370 | 0.800268 | 1.560634e-48 | -8.615850e-47 |
| Msa0031520 | Msa0385840 | 0.801184 | 1.014856e-48 | -8.615850e-47 |
| Msa0031520 | Msa0390530 | 0.801977 | 6.980176e-49 | -8.615850e-47 |
| Msa0031520 | Msa0398200 | 0.800102 | 1.687306e-48 | -8.615850e-47 |
| Msa0031520 | Msa0413410 | 0.834491 | 2.906496e-56 | -8.615850e-47 |
| Msa0031520 | Msa0432160 | 0.806303 | 8.781372e-50 | -8.615850e-47 |
| Msa0031520 | Msa0444750 | -0.802173 | 6.361026e-49 | -8.615850e-47 |
| Msa0031520 | Msa0450400 | -0.812982 | 3.222215e-51 | -8.615850e-47 |
| Msa0031520 | Msa0476680 | 0.808174 | 3.524812e-50 | -8.615850e-47 |
| Msa0031520 | Msa0477310 | 0.800136 | 1.659998e-48 | -8.615850e-47 |
| Msa0031520 | Msa0490140 | 0.921050 | 5.877063e-88 | -8.615850e-47 |
| Msa0031520 | Msa0514320 | 0.931911 | 1.871410e-94 | -8.615850e-47 |
| Msa0031520 | Msa0518950 | 0.802126 | 6.504992e-49 | -8.615850e-47 |
| Msa0031520 | Msa0519640 | 0.807277 | 5.466672e-50 | -8.615850e-47 |
| Msa0031520 | Msa0521010 | 0.809215 | 2.112310e-50 | -8.615850e-47 |
| Msa0031520 | Msa0521740 | 0.810621 | 1.052129e-50 | -8.615850e-47 |
| Msa0031520 | Msa0523940 | 0.817303 | 3.536646e-52 | -8.615850e-47 |
| Msa0031520 | Msa0542290 | 0.809242 | 2.084753e-50 | -8.615850e-47 |
| Msa0031520 | Msa0600450 | 0.801471 | 8.865430e-49 | -8.615850e-47 |
| Msa0031520 | Msa0602980 | 0.966338 | 8.684320e-126 | -8.615850e-47 |
| Msa0031520 | Msa0615010 | 0.803648 | 3.153867e-49 | -8.615850e-47 |
| Msa0031520 | Msa0638350 | 0.817586 | 3.054561e-52 | -8.615850e-47 |
| Msa0031520 | Msa0638360 | 0.807936 | 3.961015e-50 | -8.615850e-47 |
| Msa0031520 | Msa0645300 | 0.895399 | 9.949270e-76 | -8.615850e-47 |
| Msa0031520 | Msa0648240 | -0.804496 | 2.101137e-49 | -8.615850e-47 |
| Msa0031520 | Msa0659210 | 0.809583 | 1.761143e-50 | -8.615850e-47 |
| Msa0031520 | Msa0672480 | 0.819983 | 8.720861e-53 | -8.615850e-47 |
| Msa0031520 | Msa0679360 | 0.802095 | 6.600472e-49 | -8.615850e-47 |
| Msa0031520 | Msa0682680 | 0.804975 | 1.668657e-49 | -8.615850e-47 |
| Msa0031520 | Msa0701010 | 0.812460 | 4.193882e-51 | -8.615850e-47 |
| Msa0031520 | Msa0703780 | 0.816387 | 5.676924e-52 | -8.615850e-47 |
| Msa0031520 | Msa0748920 | 0.815392 | 9.466284e-52 | -8.615850e-47 |
| Msa0031520 | Msa0750650 | 0.802370 | 5.794689e-49 | -8.615850e-47 |
| Msa0031520 | Msa0755180 | 0.812186 | 4.813125e-51 | -8.615850e-47 |
| Msa0031520 | Msa0768370 | 0.803579 | 3.258406e-49 | -8.615850e-47 |
| Msa0031520 | Msa0773180 | 0.820686 | 6.015879e-53 | -8.615850e-47 |
| Msa0031520 | Msa0773850 | 0.801732 | 7.835272e-49 | -8.615850e-47 |
| Msa0031520 | Msa0804810 | 0.922967 | 4.930832e-89 | -8.615850e-47 |
| Msa0031520 | Msa0810270 | 0.806444 | 8.203510e-50 | -8.615850e-47 |
| Msa0031520 | Msa0831130 | 0.802342 | 5.871421e-49 | -8.615850e-47 |
| Msa0031520 | Msa0832040 | 0.803728 | 3.035441e-49 | -8.615850e-47 |
| Msa0031520 | Msa0844420 | 0.828872 | 7.061146e-55 | -8.615850e-47 |
| Msa0031520 | Msa0844440 | 0.805908 | 1.063533e-49 | -8.615850e-47 |
| Msa0031520 | Msa0844450 | 0.801761 | 7.728895e-49 | -8.615850e-47 |
| Msa0031520 | Msa0844490 | 0.842620 | 2.314341e-58 | -8.615850e-47 |
| Msa0031520 | Msa0848990 | 0.801549 | 8.543687e-49 | -8.615850e-47 |
| Msa0031520 | Msa0853520 | 0.804734 | 1.873594e-49 | -8.615850e-47 |
| Msa0031520 | Msa0857640 | 0.820594 | 6.315145e-53 | -8.615850e-47 |
| Msa0031520 | Msa0866410 | 0.804787 | 1.826782e-49 | -8.615850e-47 |
| Msa0031520 | Msa0877250 | 0.804710 | 1.895310e-49 | -8.615850e-47 |
| Msa0031520 | Msa0897330 | 0.810484 | 1.126822e-50 | -8.615850e-47 |
| Msa0031520 | Msa0899430 | 0.803421 | 3.514164e-49 | -8.615850e-47 |
| Msa0031520 | Msa0899450 | 0.802754 | 4.829084e-49 | -8.615850e-47 |
| Msa0031520 | Msa0914270 | 0.825417 | 4.741526e-54 | -8.615850e-47 |
| Msa0031520 | Msa0927380 | 0.825900 | 3.642424e-54 | -8.615850e-47 |
| Msa0031520 | Msa0936300 | 0.826960 | 2.036358e-54 | -8.615850e-47 |
| Msa0031520 | Msa0944610 | 0.818920 | 1.523897e-52 | -8.615850e-47 |
| Msa0031520 | Msa0948320 | 0.926640 | 3.550196e-91 | -8.615850e-47 |
| Msa0031520 | Msa0964900 | 0.803689 | 3.091579e-49 | -8.615850e-47 |
| Msa0031520 | Msa0966750 | 0.800453 | 1.430823e-48 | -8.615850e-47 |
| Msa0031520 | Msa0969810 | 0.802180 | 6.340375e-49 | -8.615850e-47 |
| Msa0031520 | Msa0973100 | 0.823309 | 1.485039e-53 | -8.615850e-47 |
| Msa0031520 | Msa0974080 | 0.833360 | 5.577389e-56 | -8.615850e-47 |
| Msa0031520 | Msa0974950 | 0.810495 | 1.120717e-50 | -8.615850e-47 |
| Msa0031520 | Msa1000890 | 0.822485 | 2.310596e-53 | -8.615850e-47 |
| Msa0031520 | Msa1000900 | 0.801230 | 9.933046e-49 | -8.615850e-47 |
| Msa0031520 | Msa1000930 | 0.820740 | 5.846420e-53 | -8.615850e-47 |
| Msa0031520 | Msa1001390 | 0.812991 | 3.208858e-51 | -8.615850e-47 |
| Msa0031520 | Msa1063420 | 0.811185 | 7.942541e-51 | -8.615850e-47 |
| Msa0031520 | Msa1072900 | 0.803400 | 3.549498e-49 | -8.615850e-47 |
| Msa0031520 | Msa1111870 | 0.819130 | 1.365197e-52 | -8.615850e-47 |
| Msa0031520 | Msa1113170 | 0.805599 | 1.235287e-49 | -8.615850e-47 |
| Msa0031520 | Msa1119930 | 0.811702 | 6.134912e-51 | -8.615850e-47 |
| Msa0031520 | Msa1121490 | 0.811734 | 6.037835e-51 | -8.615850e-47 |
| Msa0031520 | Msa1137570 | 0.822574 | 2.202959e-53 | -8.615850e-47 |
| Msa0031520 | Msa1142670 | 0.821238 | 4.489821e-53 | -8.615850e-47 |
| Msa0031520 | Msa1186360 | 0.806745 | 7.085446e-50 | -8.615850e-47 |
| Msa0031520 | Msa1204100 | -0.820584 | 6.349791e-53 | -8.615850e-47 |
| Msa0031520 | Msa1217650 | -0.814236 | 1.707350e-51 | -8.615850e-47 |
| Msa0031520 | Msa1226270 | 0.805853 | 1.092386e-49 | -8.615850e-47 |
| Msa0031520 | Msa1227730 | 0.818333 | 2.070601e-52 | -8.615850e-47 |
| Msa0031520 | Msa1232740 | 0.836461 | 9.231969e-57 | -8.615850e-47 |
| Msa0031520 | Msa1237020 | 0.816932 | 4.286151e-52 | -8.615850e-47 |
| Msa0031520 | Msa1265590 | 0.805340 | 1.399510e-49 | -8.615850e-47 |
| Msa0031520 | Msa1270660 | 0.804289 | 2.319742e-49 | -8.615850e-47 |
| Msa0031520 | Msa1271130 | 0.806137 | 9.520345e-50 | -8.615850e-47 |
| Msa0031520 | Msa1276600 | 0.815269 | 1.008017e-51 | -8.615850e-47 |
| Msa0031520 | Msa1276890 | 0.803651 | 3.149452e-49 | -8.615850e-47 |
| Msa0031520 | Msa1285550 | 0.806012 | 1.011517e-49 | -8.615850e-47 |
| Msa0031520 | Msa1286800 | 0.838298 | 3.125279e-57 | -8.615850e-47 |
| Msa0031520 | Msa1287190 | 0.818403 | 1.996687e-52 | -8.615850e-47 |
| Msa0031520 | Msa1296460 | -0.812683 | 3.747573e-51 | -8.615850e-47 |
| Msa0031520 | Msa1313320 | 0.845691 | 3.467217e-59 | -8.615850e-47 |
| Msa0031520 | Msa1323690 | 0.813311 | 2.729303e-51 | -8.615850e-47 |
| Msa0031520 | Msa1329050 | -0.820064 | 8.354196e-53 | -8.615850e-47 |
| Msa0031520 | Msa1331080 | 0.826623 | 2.450533e-54 | -8.615850e-47 |
| Msa0031520 | Msa1345220 | 0.807619 | 4.626449e-50 | -8.615850e-47 |
| Msa0031520 | Msa1366810 | 0.820063 | 8.359174e-53 | -8.615850e-47 |
| Msa0031520 | Msa1366970 | 0.851127 | 1.086164e-60 | -8.615850e-47 |
| Msa0031520 | Msa1388160 | 0.830453 | 2.911987e-55 | -8.615850e-47 |
| Msa0031520 | Msa1390700 | 0.844131 | 9.140585e-59 | -8.615850e-47 |
| Msa0031520 | Msa1392910 | 0.832266 | 1.042727e-55 | -8.615850e-47 |
| Msa0031520 | Msa1394310 | 0.821318 | 4.304386e-53 | -8.615850e-47 |
| Msa0031520 | Msa1412530 | 0.807209 | 5.653356e-50 | -8.615850e-47 |
| Msa0031520 | Msa1420820 | 0.800873 | 1.174983e-48 | -8.615850e-47 |
| Msa0031520 | Msa1437270 | 0.803735 | 3.025399e-49 | -8.615850e-47 |
| Msa0031520 | Msa1454450 | 0.819763 | 9.790682e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031520 | MtrunA17_Chr2g0285481 | 62.963 | 324 | 115 | 3 | 2 | 322 | 1 | 322 | 5.64e-144 | 409 |
| Msa0031520 | MtrunA17_Chr1g0172741 | 62.346 | 324 | 117 | 3 | 2 | 322 | 1 | 322 | 1.81e-142 | 405 |
| Msa0031520 | MtrunA17_Chr8g0334551 | 57.402 | 331 | 129 | 3 | 1 | 322 | 1 | 328 | 7.78e-130 | 373 |
| Msa0031520 | MtrunA17_Chr2g0321391 | 67.213 | 244 | 78 | 1 | 79 | 322 | 3 | 244 | 7.30e-117 | 337 |
| Msa0031520 | MtrunA17_Chr5g0422701 | 65.174 | 201 | 68 | 1 | 122 | 322 | 14 | 212 | 5.73e-88 | 263 |
| Msa0031520 | MtrunA17_Chr2g0295811 | 42.081 | 221 | 111 | 6 | 119 | 322 | 10 | 230 | 8.90e-44 | 150 |
| Msa0031520 | MtrunA17_Chr5g0422691 | 63.043 | 92 | 33 | 1 | 13 | 103 | 14 | 105 | 2.87e-35 | 124 |
| Msa0031520 | MtrunA17_Chr2g0295611 | 62.500 | 96 | 36 | 0 | 100 | 195 | 1 | 96 | 3.84e-33 | 118 |
| Msa0031520 | MtrunA17_Chr8g0362511 | 29.450 | 309 | 184 | 9 | 21 | 311 | 67 | 359 | 1.77e-28 | 113 |
| Msa0031520 | MtrunA17_Chr5g0402821 | 29.114 | 316 | 195 | 8 | 22 | 316 | 16 | 323 | 4.73e-28 | 111 |
| Msa0031520 | MtrunA17_Chr3g0113081 | 38.158 | 152 | 85 | 2 | 22 | 173 | 185 | 327 | 5.88e-25 | 105 |
| Msa0031520 | MtrunA17_Chr3g0113081 | 28.713 | 303 | 167 | 9 | 12 | 312 | 373 | 628 | 1.09e-23 | 101 |
| Msa0031520 | MtrunA17_Chr3g0113081 | 35.821 | 134 | 79 | 2 | 11 | 144 | 3 | 129 | 4.47e-17 | 82.0 |
| Msa0031520 | MtrunA17_Chr5g0405761 | 28.428 | 299 | 185 | 7 | 19 | 313 | 47 | 320 | 1.55e-23 | 99.0 |
| Msa0031520 | MtrunA17_Chr6g0469501 | 63.793 | 58 | 21 | 0 | 265 | 322 | 1 | 58 | 8.09e-22 | 87.0 |
| Msa0031520 | MtrunA17_Chr1g0176881 | 28.313 | 166 | 116 | 2 | 21 | 186 | 21 | 183 | 2.92e-15 | 76.6 |
| Msa0031520 | MtrunA17_Chr1g0176881 | 29.655 | 145 | 99 | 2 | 2 | 146 | 175 | 316 | 6.92e-15 | 75.5 |
| Msa0031520 | MtrunA17_Chr8g0360271 | 24.830 | 294 | 184 | 10 | 33 | 311 | 21 | 292 | 1.22e-14 | 73.2 |
| Msa0031520 | MtrunA17_Chr1g0156481 | 22.697 | 304 | 204 | 8 | 19 | 312 | 12 | 294 | 6.51e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0031520 | AT5G05800.1 | 25.157 | 318 | 212 | 6 | 6 | 323 | 156 | 447 | 8.63e-24 | 101 |
| Msa0031520 | AT5G05800.1 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 3.59e-17 | 82.4 |
| Msa0031520 | AT5G05800.5 | 25.157 | 318 | 212 | 6 | 6 | 323 | 156 | 447 | 8.63e-24 | 101 |
| Msa0031520 | AT5G05800.5 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 3.59e-17 | 82.4 |
| Msa0031520 | AT5G05800.3 | 25.157 | 318 | 212 | 6 | 6 | 323 | 156 | 447 | 8.63e-24 | 101 |
| Msa0031520 | AT5G05800.3 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 3.59e-17 | 82.4 |
| Msa0031520 | AT5G05800.2 | 25.157 | 318 | 212 | 6 | 6 | 323 | 156 | 447 | 8.63e-24 | 101 |
| Msa0031520 | AT5G05800.2 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 3.59e-17 | 82.4 |
| Msa0031520 | AT5G05800.4 | 25.157 | 318 | 212 | 6 | 6 | 323 | 156 | 447 | 8.63e-24 | 101 |
| Msa0031520 | AT5G05800.4 | 36.036 | 111 | 70 | 1 | 20 | 130 | 2 | 111 | 3.59e-17 | 82.4 |
| Msa0031520 | AT3G11290.2 | 27.181 | 298 | 199 | 7 | 20 | 311 | 163 | 448 | 9.55e-19 | 87.0 |
| Msa0031520 | AT3G11290.1 | 27.181 | 298 | 199 | 7 | 20 | 311 | 163 | 448 | 9.55e-19 | 87.0 |
| Msa0031520 | AT2G24960.1 | 29.197 | 137 | 96 | 1 | 8 | 144 | 155 | 290 | 5.39e-15 | 76.3 |
| Msa0031520 | AT2G24960.1 | 25.874 | 143 | 105 | 1 | 12 | 154 | 2 | 143 | 7.72e-11 | 63.5 |
| Msa0031520 | AT2G24960.2 | 29.197 | 137 | 96 | 1 | 8 | 144 | 155 | 290 | 6.11e-15 | 76.3 |
| Msa0031520 | AT2G24960.2 | 27.972 | 143 | 102 | 1 | 12 | 154 | 314 | 455 | 1.84e-12 | 68.6 |
| Msa0031520 | AT2G24960.2 | 26.667 | 135 | 98 | 1 | 20 | 154 | 10 | 143 | 8.59e-11 | 63.5 |
| Msa0031520 | AT3G11310.1 | 33.566 | 143 | 89 | 2 | 20 | 157 | 171 | 312 | 3.56e-13 | 70.5 |
| Msa0031520 | AT4G02210.1 | 27.673 | 159 | 113 | 2 | 13 | 170 | 2 | 159 | 1.37e-11 | 65.5 |
| Msa0031520 | AT4G02210.2 | 27.673 | 159 | 113 | 2 | 13 | 170 | 2 | 159 | 1.37e-11 | 65.5 |
| Msa0031520 | AT2G19220.1 | 25.159 | 314 | 208 | 9 | 9 | 318 | 149 | 439 | 1.38e-11 | 65.5 |
Find 74 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGCATGGTATAACTTATT+TGG | 0.134716 | 1_1:+58266355 | Msa0031520:CDS |
| ACAACTGAATTTGGAAATAT+TGG | 0.148866 | 1_1:+58266761 | Msa0031520:CDS |
| GTTGGAGCAACAACTGAATT+TGG | 0.213211 | 1_1:+58266752 | Msa0031520:CDS |
| GGCAGAAAACAAAAGCTATT+TGG | 0.232374 | 1_1:+58266146 | Msa0031520:CDS |
| AACTTATTTGGGAGAGAAAC+TGG | 0.287945 | 1_1:+58266367 | Msa0031520:CDS |
| TTGGGAGAGAAACTGGATTA+GGG | 0.298488 | 1_1:+58266374 | Msa0031520:CDS |
| TTTGGGAGAGAAACTGGATT+AGG | 0.315464 | 1_1:+58266373 | Msa0031520:CDS |
| GAAATAAACATCTCCCTTGC+AGG | 0.323302 | 1_1:-58267052 | None:intergenic |
| AAACTTTGTGAAAGCATGTT+TGG | 0.334075 | 1_1:+58266186 | Msa0031520:CDS |
| GCAGAAAACAAAAGCTATTT+GGG | 0.339319 | 1_1:+58266147 | Msa0031520:CDS |
| GTCCGGTTAAATTATGAAAT+CGG | 0.352053 | 1_1:-58266276 | None:intergenic |
| TGTATTACATACCAGTTGTT+TGG | 0.352266 | 1_1:-58266446 | None:intergenic |
| CAACTGAATTTGGAAATATT+GGG | 0.356640 | 1_1:+58266762 | Msa0031520:CDS |
| GAGCATGGTATAACTTATTT+GGG | 0.363157 | 1_1:+58266356 | Msa0031520:CDS |
| TTCAAGGATGTAGTGGCTAA+TGG | 0.366838 | 1_1:+58266608 | Msa0031520:CDS |
| CAGAGGAGAAGAGGTTGAAT+TGG | 0.373243 | 1_1:+58267086 | Msa0031520:CDS |
| GTCCGATTTCATAATTTAAC+CGG | 0.374307 | 1_1:+58266274 | Msa0031520:CDS |
| TTGGTCTCCCACCACTCATC+AGG | 0.410369 | 1_1:-58266427 | None:intergenic |
| GTTCCTCCTCACCTAGTGAT+GGG | 0.415978 | 1_1:+58266122 | Msa0031520:CDS |
| GAAAAGTGTGGTTAACTCAT+TGG | 0.420206 | 1_1:-58266588 | None:intergenic |
| AAAAGGGTGGACAAATATTA+GGG | 0.422862 | 1_1:+58266252 | Msa0031520:CDS |
| GGTTCCTCCTCACCTAGTGA+TGG | 0.438340 | 1_1:+58266121 | Msa0031520:CDS |
| TTCCTCCTCACCTAGTGATG+GGG | 0.476214 | 1_1:+58266123 | Msa0031520:CDS |
| AGAAGGCTCAACTAAAGAAT+AGG | 0.479515 | 1_1:+58266308 | Msa0031520:CDS |
| TCCTCCTCACCTAGTGATGG+GGG | 0.484199 | 1_1:+58266124 | Msa0031520:CDS |
| GATGAGGCAATGGCTGTAGA+AGG | 0.490623 | 1_1:+58266704 | Msa0031520:CDS |
| GCTGCGGGTAATGCATCTAT+TGG | 0.495551 | 1_1:+58266941 | Msa0031520:CDS |
| AGCCTTCTCATACTTCAGTC+CGG | 0.504703 | 1_1:-58266293 | None:intergenic |
| CGTACCAACACGTTCTCCCT+TGG | 0.505137 | 1_1:-58266218 | None:intergenic |
| TGCTGATGTTTAAGCCTGCA+AGG | 0.517021 | 1_1:+58267038 | Msa0031520:CDS |
| TGGCTAATGGAGAGTACACT+TGG | 0.522261 | 1_1:+58266621 | Msa0031520:CDS |
| ATGACAGTCTGAGAAAGGAT+TGG | 0.531322 | 1_1:+58266332 | Msa0031520:CDS |
| CTTCTCCTCTGAACCTCGTA+GGG | 0.535159 | 1_1:-58267074 | None:intergenic |
| GTGGTGGGAGACCAAACAAC+TGG | 0.536532 | 1_1:+58266435 | Msa0031520:CDS |
| AGGTTAGTCATGAACGGCAG+TGG | 0.537233 | 1_1:-58267130 | None:intergenic |
| TAGGTATGACAGTCTGAGAA+AGG | 0.543958 | 1_1:+58266327 | Msa0031520:CDS |
| TATTTCCCTACGAGGTTCAG+AGG | 0.555424 | 1_1:+58267069 | Msa0031520:CDS |
| GCAATGGCTGTAGAAGGATC+TGG | 0.556383 | 1_1:+58266710 | Msa0031520:CDS |
| GGAGAGAAACTGGATTAGGG+TGG | 0.557144 | 1_1:+58266377 | Msa0031520:CDS |
| ATCATTTGAGACTTCATCCA+TGG | 0.558263 | 1_1:-58266987 | None:intergenic |
| GTCAAAAGAGTGGTGAGAAG+AGG | 0.562252 | 1_1:+58266810 | Msa0031520:CDS |
| CATGACTAACCTGTGTGACT+AGG | 0.562786 | 1_1:+58267141 | Msa0031520:CDS |
| TACGAGGTTCAGAGGAGAAG+AGG | 0.567800 | 1_1:+58267077 | Msa0031520:CDS |
| CGTTCTCGCAATGATGCTGC+GGG | 0.569360 | 1_1:+58266926 | Msa0031520:CDS |
| ATGTTTGGAGCAAGTCTCCA+AGG | 0.570714 | 1_1:+58266201 | Msa0031520:CDS |
| TACACTTGGGCACCATCATG+TGG | 0.573130 | 1_1:+58266635 | Msa0031520:CDS |
| TCGTTCTCGCAATGATGCTG+CGG | 0.583184 | 1_1:+58266925 | Msa0031520:CDS |
| TGCATCTATTGGTGAAGTGA+TGG | 0.591393 | 1_1:+58266952 | Msa0031520:CDS |
| GCTGATGTTTAAGCCTGCAA+GGG | 0.594722 | 1_1:+58267039 | Msa0031520:CDS |
| TCTTCTCCTCTGAACCTCGT+AGG | 0.595412 | 1_1:-58267075 | None:intergenic |
| GATAGCGAGGATGCAAGTGT+TGG | 0.599986 | 1_1:+58266734 | Msa0031520:CDS |
| GATGGCAATACCCCACATGA+TGG | 0.601622 | 1_1:-58266647 | None:intergenic |
| CCTCCTCACCTAGTGATGGG+GGG | 0.608278 | 1_1:+58266125 | Msa0031520:CDS |
| TGAGAAAGGATTGGAGAGCA+TGG | 0.612846 | 1_1:+58266341 | Msa0031520:CDS |
| GCTACAACAGTGTTGTTCAC+AGG | 0.614063 | 1_1:-58266403 | None:intergenic |
| GTGGTTAACTCATTGGCGAA+TGG | 0.617203 | 1_1:-58266581 | None:intergenic |
| AGAAGGATCTGGCGATAGCG+AGG | 0.624952 | 1_1:+58266721 | Msa0031520:CDS |
| AACCGGACTGAAGTATGAGA+AGG | 0.626830 | 1_1:+58266291 | Msa0031520:CDS |
| ACACTTGGGCACCATCATGT+GGG | 0.626839 | 1_1:+58266636 | Msa0031520:CDS |
| CACTACATCCTTGAAAAGTG+TGG | 0.627204 | 1_1:-58266600 | None:intergenic |
| GGTTAGTCATGAACGGCAGT+GGG | 0.628971 | 1_1:-58267129 | None:intergenic |
| AAAACTGATGGTCAAAAGAG+TGG | 0.632803 | 1_1:+58266800 | Msa0031520:CDS |
| TTGTAGCACCTGATGAGTGG+TGG | 0.632872 | 1_1:+58266419 | Msa0031520:CDS |
| TCACACAGGTTAGTCATGAA+CGG | 0.640237 | 1_1:-58267136 | None:intergenic |
| CCATTACATCCTAGTCACAC+AGG | 0.643132 | 1_1:-58267150 | None:intergenic |
| GAGAGAAACTGGATTAGGGT+GGG | 0.643865 | 1_1:+58266378 | Msa0031520:CDS |
| GTCTCCAAGGGAGAACGTGT+TGG | 0.644338 | 1_1:+58266214 | Msa0031520:CDS |
| CACTTGGGCACCATCATGTG+GGG | 0.646121 | 1_1:+58266637 | Msa0031520:CDS |
| TGTTTGGAGCAAGTCTCCAA+GGG | 0.647436 | 1_1:+58266202 | Msa0031520:CDS |
| TGTAGCACCTGATGAGTGGT+GGG | 0.651018 | 1_1:+58266420 | Msa0031520:CDS |
| GATGGCTGAGCTTCACACCA+TGG | 0.663371 | 1_1:+58266970 | Msa0031520:CDS |
| GGCTAATGGAGAGTACACTT+GGG | 0.684848 | 1_1:+58266622 | Msa0031520:CDS |
| CTGTTGTAGCACCTGATGAG+TGG | 0.705267 | 1_1:+58266416 | Msa0031520:CDS |
| GAGATGTTTATTTCCCTACG+AGG | 0.736446 | 1_1:+58267061 | Msa0031520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCCTAAATTTTTCATAAAGA+GGG | - | chr1_1:58266550-58266569 | None:intergenic | 20.0% |
| !!! | TTCCTAAATTTTTCATAAAG+AGG | - | chr1_1:58266551-58266570 | None:intergenic | 20.0% |
| !! | TTATGAAAAATTTAGGAACA+AGG | + | chr1_1:58266553-58266572 | Msa0031520:CDS | 20.0% |
| !! | TATGAAAAATTTAGGAACAA+GGG | + | chr1_1:58266554-58266573 | Msa0031520:CDS | 20.0% |
| !!! | TCCTAAATTTTTCATAAAGA+GGG | - | chr1_1:58266550-58266569 | None:intergenic | 20.0% |
| !!! | TTCCTAAATTTTTCATAAAG+AGG | - | chr1_1:58266551-58266570 | None:intergenic | 20.0% |
| !! | TTATGAAAAATTTAGGAACA+AGG | + | chr1_1:58266553-58266572 | Msa0031520:CDS | 20.0% |
| !! | TATGAAAAATTTAGGAACAA+GGG | + | chr1_1:58266554-58266573 | Msa0031520:CDS | 20.0% |
| ! | AATACCAAGAAAAATGTTGT+GGG | + | chr1_1:58266100-58266119 | Msa0031520:CDS | 25.0% |
| ! | ACCCTCTTTATGAAAAATTT+AGG | + | chr1_1:58266546-58266565 | Msa0031520:CDS | 25.0% |
| ! | ATGAAAAATTTAGGAACAAG+GGG | + | chr1_1:58266555-58266574 | Msa0031520:CDS | 25.0% |
| ! | ACAACTGAATTTGGAAATAT+TGG | + | chr1_1:58266761-58266780 | Msa0031520:CDS | 25.0% |
| ! | CAACTGAATTTGGAAATATT+GGG | + | chr1_1:58266762-58266781 | Msa0031520:CDS | 25.0% |
| ! | AATTCTTCACAAAAAACTGA+TGG | + | chr1_1:58266788-58266807 | Msa0031520:CDS | 25.0% |
| ! | AATACCAAGAAAAATGTTGT+GGG | + | chr1_1:58266100-58266119 | Msa0031520:CDS | 25.0% |
| ! | ACCCTCTTTATGAAAAATTT+AGG | + | chr1_1:58266546-58266565 | Msa0031520:CDS | 25.0% |
| ! | ATGAAAAATTTAGGAACAAG+GGG | + | chr1_1:58266555-58266574 | Msa0031520:CDS | 25.0% |
| ! | ACAACTGAATTTGGAAATAT+TGG | + | chr1_1:58266761-58266780 | Msa0031520:CDS | 25.0% |
| ! | CAACTGAATTTGGAAATATT+GGG | + | chr1_1:58266762-58266781 | Msa0031520:CDS | 25.0% |
| ! | AATTCTTCACAAAAAACTGA+TGG | + | chr1_1:58266788-58266807 | Msa0031520:CDS | 25.0% |
| GAATACCAAGAAAAATGTTG+TGG | + | chr1_1:58266099-58266118 | Msa0031520:CDS | 30.0% | |
| GCAGAAAACAAAAGCTATTT+GGG | + | chr1_1:58266147-58266166 | Msa0031520:CDS | 30.0% | |
| ! | AAACTTTGTGAAAGCATGTT+TGG | + | chr1_1:58266186-58266205 | Msa0031520:CDS | 30.0% |
| ! | GTACGAGCTTTTCAAAAAAA+GGG | + | chr1_1:58266236-58266255 | Msa0031520:CDS | 30.0% |
| AAAAAGGGTGGACAAATATT+AGG | + | chr1_1:58266251-58266270 | Msa0031520:CDS | 30.0% | |
| AAAAGGGTGGACAAATATTA+GGG | + | chr1_1:58266252-58266271 | Msa0031520:CDS | 30.0% | |
| GTCCGATTTCATAATTTAAC+CGG | + | chr1_1:58266274-58266293 | Msa0031520:CDS | 30.0% | |
| GTCCGGTTAAATTATGAAAT+CGG | - | chr1_1:58266279-58266298 | None:intergenic | 30.0% | |
| AGAGCATGGTATAACTTATT+TGG | + | chr1_1:58266355-58266374 | Msa0031520:CDS | 30.0% | |
| GAGCATGGTATAACTTATTT+GGG | + | chr1_1:58266356-58266375 | Msa0031520:CDS | 30.0% | |
| TGTATTACATACCAGTTGTT+TGG | - | chr1_1:58266449-58266468 | None:intergenic | 30.0% | |
| AACACGAGTATACATATCTA+AGG | - | chr1_1:58266492-58266511 | None:intergenic | 30.0% | |
| ! | TCATCATTTTCAAACACAGA+TGG | - | chr1_1:58266668-58266687 | None:intergenic | 30.0% |
| ! | TAATGATGATGATGATGATG+AGG | + | chr1_1:58266688-58266707 | Msa0031520:CDS | 30.0% |
| GAATACCAAGAAAAATGTTG+TGG | + | chr1_1:58266099-58266118 | Msa0031520:CDS | 30.0% | |
| GCAGAAAACAAAAGCTATTT+GGG | + | chr1_1:58266147-58266166 | Msa0031520:CDS | 30.0% | |
| ! | AAACTTTGTGAAAGCATGTT+TGG | + | chr1_1:58266186-58266205 | Msa0031520:CDS | 30.0% |
| ! | GTACGAGCTTTTCAAAAAAA+GGG | + | chr1_1:58266236-58266255 | Msa0031520:CDS | 30.0% |
| AAAAAGGGTGGACAAATATT+AGG | + | chr1_1:58266251-58266270 | Msa0031520:CDS | 30.0% | |
| AAAAGGGTGGACAAATATTA+GGG | + | chr1_1:58266252-58266271 | Msa0031520:CDS | 30.0% | |
| GTCCGATTTCATAATTTAAC+CGG | + | chr1_1:58266274-58266293 | Msa0031520:CDS | 30.0% | |
| GTCCGGTTAAATTATGAAAT+CGG | - | chr1_1:58266279-58266298 | None:intergenic | 30.0% | |
| AGAGCATGGTATAACTTATT+TGG | + | chr1_1:58266355-58266374 | Msa0031520:CDS | 30.0% | |
| GAGCATGGTATAACTTATTT+GGG | + | chr1_1:58266356-58266375 | Msa0031520:CDS | 30.0% | |
| TGTATTACATACCAGTTGTT+TGG | - | chr1_1:58266449-58266468 | None:intergenic | 30.0% | |
| AACACGAGTATACATATCTA+AGG | - | chr1_1:58266492-58266511 | None:intergenic | 30.0% | |
| ! | TCATCATTTTCAAACACAGA+TGG | - | chr1_1:58266668-58266687 | None:intergenic | 30.0% |
| ! | TAATGATGATGATGATGATG+AGG | + | chr1_1:58266688-58266707 | Msa0031520:CDS | 30.0% |
| GGCAGAAAACAAAAGCTATT+TGG | + | chr1_1:58266146-58266165 | Msa0031520:CDS | 35.0% | |
| ! | GGTACGAGCTTTTCAAAAAA+AGG | + | chr1_1:58266235-58266254 | Msa0031520:CDS | 35.0% |
| AGAAGGCTCAACTAAAGAAT+AGG | + | chr1_1:58266308-58266327 | Msa0031520:CDS | 35.0% | |
| AACTTATTTGGGAGAGAAAC+TGG | + | chr1_1:58266367-58266386 | Msa0031520:CDS | 35.0% | |
| GATGTGAGTTATGAAAATGC+AGG | + | chr1_1:58266520-58266539 | Msa0031520:intron | 35.0% | |
| ! | GAAAAGTGTGGTTAACTCAT+TGG | - | chr1_1:58266591-58266610 | None:intergenic | 35.0% |
| ! | TGAGTTAACCACACTTTTCA+AGG | + | chr1_1:58266592-58266611 | Msa0031520:CDS | 35.0% |
| AAAACTGATGGTCAAAAGAG+TGG | + | chr1_1:58266800-58266819 | Msa0031520:CDS | 35.0% | |
| !!! | GCACTTGCTTTTTTCTTACT+TGG | - | chr1_1:58266860-58266879 | None:intergenic | 35.0% |
| ! | ATCATTTGAGACTTCATCCA+TGG | - | chr1_1:58266990-58267009 | None:intergenic | 35.0% |
| GGCAGAAAACAAAAGCTATT+TGG | + | chr1_1:58266146-58266165 | Msa0031520:CDS | 35.0% | |
| ! | GGTACGAGCTTTTCAAAAAA+AGG | + | chr1_1:58266235-58266254 | Msa0031520:CDS | 35.0% |
| AGAAGGCTCAACTAAAGAAT+AGG | + | chr1_1:58266308-58266327 | Msa0031520:CDS | 35.0% | |
| AACTTATTTGGGAGAGAAAC+TGG | + | chr1_1:58266367-58266386 | Msa0031520:CDS | 35.0% | |
| GATGTGAGTTATGAAAATGC+AGG | + | chr1_1:58266520-58266539 | Msa0031520:intron | 35.0% | |
| ! | GAAAAGTGTGGTTAACTCAT+TGG | - | chr1_1:58266591-58266610 | None:intergenic | 35.0% |
| ! | TGAGTTAACCACACTTTTCA+AGG | + | chr1_1:58266592-58266611 | Msa0031520:CDS | 35.0% |
| AAAACTGATGGTCAAAAGAG+TGG | + | chr1_1:58266800-58266819 | Msa0031520:CDS | 35.0% | |
| !!! | GCACTTGCTTTTTTCTTACT+TGG | - | chr1_1:58266860-58266879 | None:intergenic | 35.0% |
| ! | ATCATTTGAGACTTCATCCA+TGG | - | chr1_1:58266990-58267009 | None:intergenic | 35.0% |
| ! | GGAACCCACAACATTTTTCT+TGG | - | chr1_1:58266107-58266126 | None:intergenic | 40.0% |
| ! | CGAGCTTTTCAAAAAAAGGG+TGG | + | chr1_1:58266239-58266258 | Msa0031520:CDS | 40.0% |
| TAGGTATGACAGTCTGAGAA+AGG | + | chr1_1:58266327-58266346 | Msa0031520:CDS | 40.0% | |
| ATGACAGTCTGAGAAAGGAT+TGG | + | chr1_1:58266332-58266351 | Msa0031520:CDS | 40.0% | |
| TTTGGGAGAGAAACTGGATT+AGG | + | chr1_1:58266373-58266392 | Msa0031520:CDS | 40.0% | |
| TTGGGAGAGAAACTGGATTA+GGG | + | chr1_1:58266374-58266393 | Msa0031520:CDS | 40.0% | |
| CACTACATCCTTGAAAAGTG+TGG | - | chr1_1:58266603-58266622 | None:intergenic | 40.0% | |
| !! | CACACTTTTCAAGGATGTAG+TGG | + | chr1_1:58266601-58266620 | Msa0031520:CDS | 40.0% |
| TTCAAGGATGTAGTGGCTAA+TGG | + | chr1_1:58266608-58266627 | Msa0031520:CDS | 40.0% | |
| ! | TGATGATGATGATGAGGCAA+TGG | + | chr1_1:58266694-58266713 | Msa0031520:CDS | 40.0% |
| GTTGGAGCAACAACTGAATT+TGG | + | chr1_1:58266752-58266771 | Msa0031520:CDS | 40.0% | |
| TGCATCTATTGGTGAAGTGA+TGG | + | chr1_1:58266952-58266971 | Msa0031520:CDS | 40.0% | |
| GAAATAAACATCTCCCTTGC+AGG | - | chr1_1:58267055-58267074 | None:intergenic | 40.0% | |
| GAGATGTTTATTTCCCTACG+AGG | + | chr1_1:58267061-58267080 | Msa0031520:CDS | 40.0% | |
| ! | TCACACAGGTTAGTCATGAA+CGG | - | chr1_1:58267139-58267158 | None:intergenic | 40.0% |
| ! | GGAACCCACAACATTTTTCT+TGG | - | chr1_1:58266107-58266126 | None:intergenic | 40.0% |
| ! | CGAGCTTTTCAAAAAAAGGG+TGG | + | chr1_1:58266239-58266258 | Msa0031520:CDS | 40.0% |
| TAGGTATGACAGTCTGAGAA+AGG | + | chr1_1:58266327-58266346 | Msa0031520:CDS | 40.0% | |
| ATGACAGTCTGAGAAAGGAT+TGG | + | chr1_1:58266332-58266351 | Msa0031520:CDS | 40.0% | |
| TTTGGGAGAGAAACTGGATT+AGG | + | chr1_1:58266373-58266392 | Msa0031520:CDS | 40.0% | |
| TTGGGAGAGAAACTGGATTA+GGG | + | chr1_1:58266374-58266393 | Msa0031520:CDS | 40.0% | |
| CACTACATCCTTGAAAAGTG+TGG | - | chr1_1:58266603-58266622 | None:intergenic | 40.0% | |
| !! | CACACTTTTCAAGGATGTAG+TGG | + | chr1_1:58266601-58266620 | Msa0031520:CDS | 40.0% |
| TTCAAGGATGTAGTGGCTAA+TGG | + | chr1_1:58266608-58266627 | Msa0031520:CDS | 40.0% | |
| ! | TGATGATGATGATGAGGCAA+TGG | + | chr1_1:58266694-58266713 | Msa0031520:CDS | 40.0% |
| GTTGGAGCAACAACTGAATT+TGG | + | chr1_1:58266752-58266771 | Msa0031520:CDS | 40.0% | |
| TGCATCTATTGGTGAAGTGA+TGG | + | chr1_1:58266952-58266971 | Msa0031520:CDS | 40.0% | |
| GAAATAAACATCTCCCTTGC+AGG | - | chr1_1:58267055-58267074 | None:intergenic | 40.0% | |
| GAGATGTTTATTTCCCTACG+AGG | + | chr1_1:58267061-58267080 | Msa0031520:CDS | 40.0% | |
| ! | TCACACAGGTTAGTCATGAA+CGG | - | chr1_1:58267139-58267158 | None:intergenic | 40.0% |
| ! | ATGTTTGGAGCAAGTCTCCA+AGG | + | chr1_1:58266201-58266220 | Msa0031520:CDS | 45.0% |
| ! | TGTTTGGAGCAAGTCTCCAA+GGG | + | chr1_1:58266202-58266221 | Msa0031520:CDS | 45.0% |
| AACCGGACTGAAGTATGAGA+AGG | + | chr1_1:58266291-58266310 | Msa0031520:CDS | 45.0% | |
| AGCCTTCTCATACTTCAGTC+CGG | - | chr1_1:58266296-58266315 | None:intergenic | 45.0% | |
| TGAGAAAGGATTGGAGAGCA+TGG | + | chr1_1:58266341-58266360 | Msa0031520:CDS | 45.0% | |
| ! | GAGAGAAACTGGATTAGGGT+GGG | + | chr1_1:58266378-58266397 | Msa0031520:CDS | 45.0% |
| ! | GCTACAACAGTGTTGTTCAC+AGG | - | chr1_1:58266406-58266425 | None:intergenic | 45.0% |
| GTGGTTAACTCATTGGCGAA+TGG | - | chr1_1:58266584-58266603 | None:intergenic | 45.0% | |
| ! | TGGCTAATGGAGAGTACACT+TGG | + | chr1_1:58266621-58266640 | Msa0031520:CDS | 45.0% |
| ! | GGCTAATGGAGAGTACACTT+GGG | + | chr1_1:58266622-58266641 | Msa0031520:CDS | 45.0% |
| GTCAAAAGAGTGGTGAGAAG+AGG | + | chr1_1:58266810-58266829 | Msa0031520:CDS | 45.0% | |
| TGCTGATGTTTAAGCCTGCA+AGG | + | chr1_1:58267038-58267057 | Msa0031520:CDS | 45.0% | |
| GCTGATGTTTAAGCCTGCAA+GGG | + | chr1_1:58267039-58267058 | Msa0031520:CDS | 45.0% | |
| TATTTCCCTACGAGGTTCAG+AGG | + | chr1_1:58267069-58267088 | Msa0031520:CDS | 45.0% | |
| CAGAGGAGAAGAGGTTGAAT+TGG | + | chr1_1:58267086-58267105 | Msa0031520:CDS | 45.0% | |
| ! | ATGTTTGGAGCAAGTCTCCA+AGG | + | chr1_1:58266201-58266220 | Msa0031520:CDS | 45.0% |
| ! | TGTTTGGAGCAAGTCTCCAA+GGG | + | chr1_1:58266202-58266221 | Msa0031520:CDS | 45.0% |
| AACCGGACTGAAGTATGAGA+AGG | + | chr1_1:58266291-58266310 | Msa0031520:CDS | 45.0% | |
| AGCCTTCTCATACTTCAGTC+CGG | - | chr1_1:58266296-58266315 | None:intergenic | 45.0% | |
| TGAGAAAGGATTGGAGAGCA+TGG | + | chr1_1:58266341-58266360 | Msa0031520:CDS | 45.0% | |
| ! | GAGAGAAACTGGATTAGGGT+GGG | + | chr1_1:58266378-58266397 | Msa0031520:CDS | 45.0% |
| ! | GCTACAACAGTGTTGTTCAC+AGG | - | chr1_1:58266406-58266425 | None:intergenic | 45.0% |
| GTGGTTAACTCATTGGCGAA+TGG | - | chr1_1:58266584-58266603 | None:intergenic | 45.0% | |
| ! | TGGCTAATGGAGAGTACACT+TGG | + | chr1_1:58266621-58266640 | Msa0031520:CDS | 45.0% |
| ! | GGCTAATGGAGAGTACACTT+GGG | + | chr1_1:58266622-58266641 | Msa0031520:CDS | 45.0% |
| GTCAAAAGAGTGGTGAGAAG+AGG | + | chr1_1:58266810-58266829 | Msa0031520:CDS | 45.0% | |
| TGCTGATGTTTAAGCCTGCA+AGG | + | chr1_1:58267038-58267057 | Msa0031520:CDS | 45.0% | |
| GCTGATGTTTAAGCCTGCAA+GGG | + | chr1_1:58267039-58267058 | Msa0031520:CDS | 45.0% | |
| TATTTCCCTACGAGGTTCAG+AGG | + | chr1_1:58267069-58267088 | Msa0031520:CDS | 45.0% | |
| CAGAGGAGAAGAGGTTGAAT+TGG | + | chr1_1:58267086-58267105 | Msa0031520:CDS | 45.0% | |
| GTTCCTCCTCACCTAGTGAT+GGG | + | chr1_1:58266122-58266141 | Msa0031520:CDS | 50.0% | |
| TTCCTCCTCACCTAGTGATG+GGG | + | chr1_1:58266123-58266142 | Msa0031520:CDS | 50.0% | |
| ! | GGAGAGAAACTGGATTAGGG+TGG | + | chr1_1:58266377-58266396 | Msa0031520:CDS | 50.0% |
| CTGTTGTAGCACCTGATGAG+TGG | + | chr1_1:58266416-58266435 | Msa0031520:CDS | 50.0% | |
| TTGTAGCACCTGATGAGTGG+TGG | + | chr1_1:58266419-58266438 | Msa0031520:CDS | 50.0% | |
| TGTAGCACCTGATGAGTGGT+GGG | + | chr1_1:58266420-58266439 | Msa0031520:CDS | 50.0% | |
| TACACTTGGGCACCATCATG+TGG | + | chr1_1:58266635-58266654 | Msa0031520:CDS | 50.0% | |
| ACACTTGGGCACCATCATGT+GGG | + | chr1_1:58266636-58266655 | Msa0031520:CDS | 50.0% | |
| GATGGCAATACCCCACATGA+TGG | - | chr1_1:58266650-58266669 | None:intergenic | 50.0% | |
| GATGAGGCAATGGCTGTAGA+AGG | + | chr1_1:58266704-58266723 | Msa0031520:CDS | 50.0% | |
| GCAATGGCTGTAGAAGGATC+TGG | + | chr1_1:58266710-58266729 | Msa0031520:CDS | 50.0% | |
| GATAGCGAGGATGCAAGTGT+TGG | + | chr1_1:58266734-58266753 | Msa0031520:CDS | 50.0% | |
| TCGTTCTCGCAATGATGCTG+CGG | + | chr1_1:58266925-58266944 | Msa0031520:CDS | 50.0% | |
| GCTGCGGGTAATGCATCTAT+TGG | + | chr1_1:58266941-58266960 | Msa0031520:CDS | 50.0% | |
| CTTCTCCTCTGAACCTCGTA+GGG | - | chr1_1:58267077-58267096 | None:intergenic | 50.0% | |
| TCTTCTCCTCTGAACCTCGT+AGG | - | chr1_1:58267078-58267097 | None:intergenic | 50.0% | |
| TACGAGGTTCAGAGGAGAAG+AGG | + | chr1_1:58267077-58267096 | Msa0031520:CDS | 50.0% | |
| ! | GGTTAGTCATGAACGGCAGT+GGG | - | chr1_1:58267132-58267151 | None:intergenic | 50.0% |
| ! | AGGTTAGTCATGAACGGCAG+TGG | - | chr1_1:58267133-58267152 | None:intergenic | 50.0% |
| GTTCCTCCTCACCTAGTGAT+GGG | + | chr1_1:58266122-58266141 | Msa0031520:CDS | 50.0% | |
| TTCCTCCTCACCTAGTGATG+GGG | + | chr1_1:58266123-58266142 | Msa0031520:CDS | 50.0% | |
| ! | GGAGAGAAACTGGATTAGGG+TGG | + | chr1_1:58266377-58266396 | Msa0031520:CDS | 50.0% |
| CTGTTGTAGCACCTGATGAG+TGG | + | chr1_1:58266416-58266435 | Msa0031520:CDS | 50.0% | |
| TTGTAGCACCTGATGAGTGG+TGG | + | chr1_1:58266419-58266438 | Msa0031520:CDS | 50.0% | |
| TGTAGCACCTGATGAGTGGT+GGG | + | chr1_1:58266420-58266439 | Msa0031520:CDS | 50.0% | |
| TACACTTGGGCACCATCATG+TGG | + | chr1_1:58266635-58266654 | Msa0031520:CDS | 50.0% | |
| ACACTTGGGCACCATCATGT+GGG | + | chr1_1:58266636-58266655 | Msa0031520:CDS | 50.0% | |
| GATGGCAATACCCCACATGA+TGG | - | chr1_1:58266650-58266669 | None:intergenic | 50.0% | |
| GATGAGGCAATGGCTGTAGA+AGG | + | chr1_1:58266704-58266723 | Msa0031520:CDS | 50.0% | |
| GCAATGGCTGTAGAAGGATC+TGG | + | chr1_1:58266710-58266729 | Msa0031520:CDS | 50.0% | |
| GATAGCGAGGATGCAAGTGT+TGG | + | chr1_1:58266734-58266753 | Msa0031520:CDS | 50.0% | |
| TCGTTCTCGCAATGATGCTG+CGG | + | chr1_1:58266925-58266944 | Msa0031520:CDS | 50.0% | |
| GCTGCGGGTAATGCATCTAT+TGG | + | chr1_1:58266941-58266960 | Msa0031520:CDS | 50.0% | |
| CTTCTCCTCTGAACCTCGTA+GGG | - | chr1_1:58267077-58267096 | None:intergenic | 50.0% | |
| TCTTCTCCTCTGAACCTCGT+AGG | - | chr1_1:58267078-58267097 | None:intergenic | 50.0% | |
| TACGAGGTTCAGAGGAGAAG+AGG | + | chr1_1:58267077-58267096 | Msa0031520:CDS | 50.0% | |
| ! | GGTTAGTCATGAACGGCAGT+GGG | - | chr1_1:58267132-58267151 | None:intergenic | 50.0% |
| ! | AGGTTAGTCATGAACGGCAG+TGG | - | chr1_1:58267133-58267152 | None:intergenic | 50.0% |
| GGTTCCTCCTCACCTAGTGA+TGG | + | chr1_1:58266121-58266140 | Msa0031520:CDS | 55.0% | |
| TCCTCCTCACCTAGTGATGG+GGG | + | chr1_1:58266124-58266143 | Msa0031520:CDS | 55.0% | |
| ! | GTTTTCTGCCCCCCATCACT+AGG | - | chr1_1:58266136-58266155 | None:intergenic | 55.0% |
| GTCTCCAAGGGAGAACGTGT+TGG | + | chr1_1:58266214-58266233 | Msa0031520:CDS | 55.0% | |
| CGTACCAACACGTTCTCCCT+TGG | - | chr1_1:58266221-58266240 | None:intergenic | 55.0% | |
| TTGGTCTCCCACCACTCATC+AGG | - | chr1_1:58266430-58266449 | None:intergenic | 55.0% | |
| ! | GTGGTGGGAGACCAAACAAC+TGG | + | chr1_1:58266435-58266454 | Msa0031520:CDS | 55.0% |
| CACTTGGGCACCATCATGTG+GGG | + | chr1_1:58266637-58266656 | Msa0031520:CDS | 55.0% | |
| AGAAGGATCTGGCGATAGCG+AGG | + | chr1_1:58266721-58266740 | Msa0031520:CDS | 55.0% | |
| CGTTCTCGCAATGATGCTGC+GGG | + | chr1_1:58266926-58266945 | Msa0031520:CDS | 55.0% | |
| GATGGCTGAGCTTCACACCA+TGG | + | chr1_1:58266970-58266989 | Msa0031520:CDS | 55.0% | |
| GGTTCCTCCTCACCTAGTGA+TGG | + | chr1_1:58266121-58266140 | Msa0031520:CDS | 55.0% | |
| TCCTCCTCACCTAGTGATGG+GGG | + | chr1_1:58266124-58266143 | Msa0031520:CDS | 55.0% | |
| ! | GTTTTCTGCCCCCCATCACT+AGG | - | chr1_1:58266136-58266155 | None:intergenic | 55.0% |
| GTCTCCAAGGGAGAACGTGT+TGG | + | chr1_1:58266214-58266233 | Msa0031520:CDS | 55.0% | |
| CGTACCAACACGTTCTCCCT+TGG | - | chr1_1:58266221-58266240 | None:intergenic | 55.0% | |
| TTGGTCTCCCACCACTCATC+AGG | - | chr1_1:58266430-58266449 | None:intergenic | 55.0% | |
| ! | GTGGTGGGAGACCAAACAAC+TGG | + | chr1_1:58266435-58266454 | Msa0031520:CDS | 55.0% |
| CACTTGGGCACCATCATGTG+GGG | + | chr1_1:58266637-58266656 | Msa0031520:CDS | 55.0% | |
| AGAAGGATCTGGCGATAGCG+AGG | + | chr1_1:58266721-58266740 | Msa0031520:CDS | 55.0% | |
| CGTTCTCGCAATGATGCTGC+GGG | + | chr1_1:58266926-58266945 | Msa0031520:CDS | 55.0% | |
| GATGGCTGAGCTTCACACCA+TGG | + | chr1_1:58266970-58266989 | Msa0031520:CDS | 55.0% | |
| ! | CCTCCTCACCTAGTGATGGG+GGG | + | chr1_1:58266125-58266144 | Msa0031520:CDS | 60.0% |
| ! | CCTCCTCACCTAGTGATGGG+GGG | + | chr1_1:58266125-58266144 | Msa0031520:CDS | 60.0% |
| CCCCCCATCACTAGGTGAGG+AGG | - | chr1_1:58266128-58266147 | None:intergenic | 65.0% | |
| CTGCCCCCCATCACTAGGTG+AGG | - | chr1_1:58266131-58266150 | None:intergenic | 65.0% | |
| CCCCCCATCACTAGGTGAGG+AGG | - | chr1_1:58266128-58266147 | None:intergenic | 65.0% | |
| CTGCCCCCCATCACTAGGTG+AGG | - | chr1_1:58266131-58266150 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 58266094 | 58267162 | 58266094 | ID=Msa0031520;Name=Msa0031520 |
| chr1_1 | mRNA | 58266094 | 58267162 | 58266094 | ID=Msa0031520-mRNA-1;Parent=Msa0031520;Name=Msa0031520-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|327 |
| chr1_1 | exon | 58266094 | 58266456 | 58266094 | ID=Msa0031520-mRNA-1:exon:17733;Parent=Msa0031520-mRNA-1 |
| chr1_1 | exon | 58266542 | 58267162 | 58266542 | ID=Msa0031520-mRNA-1:exon:17734;Parent=Msa0031520-mRNA-1 |
| chr1_1 | CDS | 58266094 | 58266456 | 58266094 | ID=Msa0031520-mRNA-1:cds;Parent=Msa0031520-mRNA-1 |
| chr1_1 | CDS | 58266542 | 58267162 | 58266542 | ID=Msa0031520-mRNA-1:cds;Parent=Msa0031520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
