Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477500 | XP_003603599.1 | 82.597 | 362 | 20 | 3 | 1 | 359 | 1 | 322 | 0.0 | 597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477500 | sp|Q08298|RD22_ARATH | 50.904 | 387 | 156 | 6 | 4 | 356 | 3 | 389 | 7.11e-125 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477500 | G7J3E3 | 82.597 | 362 | 20 | 3 | 1 | 359 | 1 | 322 | 0.0 | 597 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0433650 | Msa0477500 | 0.845424 | 4.097015e-59 | -8.615850e-47 |
| Msa0477500 | Msa0521490 | 0.852463 | 4.541584e-61 | -8.615850e-47 |
| Msa0477500 | Msa0521550 | 0.843380 | 1.451642e-58 | -8.615850e-47 |
| Msa0313900 | Msa0477500 | 0.805738 | 1.154772e-49 | -8.615850e-47 |
| Msa0343210 | Msa0477500 | 0.801989 | 6.939476e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477500 | MtrunA17_Chr3g0139431 | 82.597 | 362 | 20 | 3 | 1 | 359 | 1 | 322 | 0.0 | 597 |
| Msa0477500 | MtrunA17_Chr1g0147271 | 60.156 | 384 | 125 | 4 | 1 | 357 | 1 | 383 | 6.92e-165 | 466 |
| Msa0477500 | MtrunA17_Chr1g0146631 | 55.402 | 361 | 119 | 7 | 1 | 357 | 1 | 323 | 3.73e-138 | 395 |
| Msa0477500 | MtrunA17_Chr1g0147331 | 54.848 | 361 | 121 | 7 | 1 | 357 | 1 | 323 | 2.68e-132 | 380 |
| Msa0477500 | MtrunA17_Chr1g0147311 | 48.760 | 363 | 145 | 7 | 1 | 357 | 27 | 354 | 5.03e-115 | 338 |
| Msa0477500 | MtrunA17_Chr1g0147261 | 47.899 | 357 | 125 | 7 | 1 | 356 | 1 | 297 | 1.50e-108 | 319 |
| Msa0477500 | MtrunA17_Chr1g0147241 | 48.324 | 358 | 135 | 9 | 1 | 356 | 1 | 310 | 3.99e-108 | 319 |
| Msa0477500 | MtrunA17_Chr1g0147291 | 54.643 | 280 | 109 | 4 | 80 | 357 | 2 | 265 | 1.65e-103 | 305 |
| Msa0477500 | MtrunA17_Chr1g0147301 | 53.409 | 264 | 115 | 3 | 100 | 357 | 22 | 283 | 1.65e-99 | 296 |
| Msa0477500 | MtrunA17_Chr1g0147321 | 59.111 | 225 | 91 | 1 | 132 | 356 | 12 | 235 | 3.07e-98 | 291 |
| Msa0477500 | MtrunA17_Chr1g0147251 | 48.207 | 251 | 119 | 4 | 106 | 356 | 1 | 240 | 3.58e-82 | 250 |
| Msa0477500 | MtrunA17_Chr4g0034821 | 45.536 | 224 | 115 | 5 | 141 | 358 | 69 | 291 | 1.43e-59 | 194 |
| Msa0477500 | MtrunA17_Chr3g0144451 | 43.750 | 224 | 119 | 5 | 141 | 358 | 53 | 275 | 9.92e-57 | 186 |
| Msa0477500 | MtrunA17_Chr3g0138231 | 43.750 | 224 | 119 | 4 | 141 | 358 | 44 | 266 | 3.22e-56 | 184 |
| Msa0477500 | MtrunA17_Chr3g0144421 | 41.518 | 224 | 123 | 5 | 141 | 358 | 81 | 302 | 3.22e-53 | 178 |
| Msa0477500 | MtrunA17_Chr4g0034731 | 39.381 | 226 | 129 | 6 | 139 | 358 | 209 | 432 | 1.18e-43 | 156 |
| Msa0477500 | MtrunA17_Chr4g0034451 | 40.000 | 240 | 127 | 10 | 129 | 358 | 294 | 526 | 9.16e-43 | 155 |
| Msa0477500 | MtrunA17_Chr8g0355861 | 39.640 | 222 | 95 | 8 | 148 | 359 | 69 | 261 | 1.03e-40 | 144 |
| Msa0477500 | MtrunA17_Chr4g0034721 | 40.639 | 219 | 120 | 7 | 147 | 358 | 361 | 576 | 2.30e-40 | 149 |
| Msa0477500 | MtrunA17_Chr3g0144391 | 39.631 | 217 | 123 | 6 | 147 | 358 | 292 | 505 | 2.40e-40 | 149 |
| Msa0477500 | MtrunA17_Chr3g0144411 | 37.788 | 217 | 127 | 5 | 147 | 358 | 325 | 538 | 5.98e-40 | 148 |
| Msa0477500 | MtrunA17_Chr4g0034691 | 37.156 | 218 | 129 | 6 | 147 | 358 | 493 | 708 | 1.19e-37 | 143 |
| Msa0477500 | MtrunA17_Chr8g0355311 | 45.578 | 147 | 71 | 3 | 214 | 359 | 53 | 191 | 1.56e-35 | 128 |
| Msa0477500 | MtrunA17_Chr2g0318901 | 33.040 | 227 | 119 | 5 | 137 | 359 | 63 | 260 | 1.12e-34 | 128 |
| Msa0477500 | MtrunA17_Chr8g0355871 | 34.821 | 224 | 118 | 7 | 139 | 358 | 23 | 222 | 1.85e-34 | 127 |
| Msa0477500 | MtrunA17_Chr8g0355331 | 44.444 | 153 | 76 | 3 | 208 | 359 | 278 | 422 | 3.95e-34 | 130 |
| Msa0477500 | MtrunA17_Chr8g0355321 | 34.263 | 251 | 119 | 8 | 148 | 359 | 60 | 303 | 1.19e-33 | 126 |
| Msa0477500 | MtrunA17_Chr8g0355841 | 43.750 | 160 | 80 | 5 | 200 | 359 | 361 | 510 | 1.29e-33 | 130 |
| Msa0477500 | MtrunA17_Chr6g0485051 | 35.266 | 207 | 125 | 7 | 159 | 358 | 1 | 205 | 8.99e-33 | 121 |
| Msa0477500 | MtrunA17_Chr2g0318871 | 32.743 | 226 | 123 | 6 | 136 | 359 | 62 | 260 | 9.39e-33 | 123 |
| Msa0477500 | MtrunA17_Chr8g0355831 | 41.975 | 162 | 84 | 3 | 198 | 359 | 201 | 352 | 2.07e-32 | 124 |
| Msa0477500 | MtrunA17_Chr8g0365361 | 35.160 | 219 | 126 | 5 | 147 | 356 | 181 | 392 | 4.19e-32 | 124 |
| Msa0477500 | MtrunA17_Chr3g0117791 | 36.986 | 219 | 124 | 6 | 147 | 357 | 413 | 625 | 1.15e-31 | 125 |
| Msa0477500 | MtrunA17_Chr2g0318931 | 33.486 | 218 | 115 | 8 | 147 | 359 | 79 | 271 | 4.14e-31 | 119 |
| Msa0477500 | MtrunA17_Chr8g0365401 | 35.484 | 217 | 130 | 5 | 147 | 357 | 412 | 624 | 5.07e-31 | 124 |
| Msa0477500 | MtrunA17_Chr5g0413591 | 32.870 | 216 | 137 | 5 | 147 | 357 | 415 | 627 | 5.13e-31 | 124 |
| Msa0477500 | MtrunA17_Chr8g0365381 | 35.981 | 214 | 131 | 4 | 147 | 356 | 429 | 640 | 3.24e-30 | 121 |
| Msa0477500 | MtrunA17_Chr1g0168781 | 33.028 | 218 | 115 | 6 | 147 | 359 | 69 | 260 | 1.18e-28 | 112 |
| Msa0477500 | MtrunA17_Chr4g0076231 | 35.065 | 154 | 96 | 2 | 206 | 356 | 4 | 156 | 4.23e-24 | 97.1 |
| Msa0477500 | MtrunA17_Chr5g0412981 | 28.899 | 218 | 151 | 4 | 145 | 359 | 195 | 411 | 1.68e-23 | 100 |
| Msa0477500 | MtrunA17_Chr5g0412981 | 26.786 | 168 | 121 | 2 | 174 | 340 | 18 | 184 | 2.22e-13 | 70.9 |
| Msa0477500 | MtrunA17_Chr5g0412991 | 28.899 | 218 | 151 | 4 | 145 | 359 | 195 | 411 | 1.81e-23 | 100 |
| Msa0477500 | MtrunA17_Chr5g0412991 | 26.786 | 168 | 121 | 2 | 174 | 340 | 18 | 184 | 1.00e-13 | 72.0 |
| Msa0477500 | MtrunA17_Chr1g0147231 | 58.025 | 81 | 32 | 2 | 133 | 211 | 50 | 130 | 1.17e-22 | 92.8 |
| Msa0477500 | MtrunA17_Chr5g0412951 | 27.053 | 207 | 147 | 4 | 153 | 356 | 2 | 207 | 2.36e-19 | 85.5 |
| Msa0477500 | MtrunA17_Chr4g0034051 | 46.753 | 77 | 38 | 3 | 285 | 358 | 3 | 79 | 1.25e-18 | 79.7 |
| Msa0477500 | MtrunA17_Chr8g0371951 | 44.000 | 75 | 38 | 2 | 276 | 347 | 14 | 87 | 8.78e-17 | 74.7 |
| Msa0477500 | MtrunA17_Chr5g0413021 | 34.118 | 85 | 55 | 1 | 276 | 359 | 46 | 130 | 7.96e-14 | 67.8 |
| Msa0477500 | MtrunA17_Chr1g0147281 | 59.184 | 49 | 19 | 1 | 1 | 48 | 1 | 49 | 1.04e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477500 | AT5G25610.1 | 50.904 | 387 | 156 | 6 | 4 | 356 | 3 | 389 | 7.23e-126 | 367 |
| Msa0477500 | AT1G49320.1 | 37.991 | 229 | 130 | 6 | 140 | 357 | 51 | 278 | 3.00e-45 | 157 |
| Msa0477500 | AT1G60390.1 | 34.419 | 215 | 133 | 5 | 147 | 356 | 409 | 620 | 4.38e-32 | 127 |
| Msa0477500 | AT1G70370.2 | 35.321 | 218 | 129 | 7 | 147 | 357 | 411 | 623 | 3.24e-31 | 124 |
| Msa0477500 | AT1G70370.1 | 35.321 | 218 | 129 | 7 | 147 | 357 | 411 | 623 | 3.24e-31 | 124 |
| Msa0477500 | AT1G23760.1 | 32.719 | 217 | 136 | 5 | 147 | 357 | 407 | 619 | 1.03e-28 | 117 |
Find 95 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATACTGTACTAATTAATT+TGG | 0.163552 | 3_3:+81707763 | None:intergenic |
| TAGAGCAGCATTATTCTTCT+TGG | 0.210808 | 3_3:-81708409 | Msa0477500:CDS |
| CTTTACCTCCTGAACTTTAC+TGG | 0.231771 | 3_3:-81708960 | Msa0477500:CDS |
| TTCCTGAGGATCACATTGTT+TGG | 0.260914 | 3_3:-81707789 | Msa0477500:CDS |
| AACATTCACTGAGGTTCCTT+TGG | 0.269839 | 3_3:+81708611 | None:intergenic |
| AGGATATCAGTTATGGCTTT+TGG | 0.293944 | 3_3:+81708910 | None:intergenic |
| TGTATTTGCAACCAAGCTTT+AGG | 0.300647 | 3_3:-81710749 | Msa0477500:five_prime_UTR |
| ACTTGAAAAGCAAGGTGTTT+GGG | 0.310906 | 3_3:+81707853 | None:intergenic |
| GTTCCTTTGGAGGCTGATAA+TGG | 0.312970 | 3_3:-81707928 | Msa0477500:CDS |
| TTATTCAAGGACGGGGTAAA+AGG | 0.318604 | 3_3:+81707725 | None:intergenic |
| TGGCAGACCGAAAGTGTTCC+TGG | 0.327249 | 3_3:+81707817 | None:intergenic |
| TCCTGAGGATCACATTGTTT+GGG | 0.351762 | 3_3:-81707788 | Msa0477500:CDS |
| ACATTCACTGAGGTTCCTTT+GGG | 0.352599 | 3_3:+81708612 | None:intergenic |
| AAGAGCTTATTCTGTTCCTT+TGG | 0.359250 | 3_3:-81707941 | Msa0477500:CDS |
| GACTTGAAAAGCAAGGTGTT+TGG | 0.359862 | 3_3:+81707852 | None:intergenic |
| AGCTTATTCTGTTCCTTTGG+AGG | 0.380981 | 3_3:-81707938 | Msa0477500:CDS |
| GCCACACAGATACTTCAAAA+TGG | 0.382981 | 3_3:-81707879 | Msa0477500:CDS |
| ATTTAATTTGCAGCTTGTAT+TGG | 0.383994 | 3_3:-81708998 | Msa0477500:intron |
| TGACAATAAAATATAGCATA+AGG | 0.384244 | 3_3:+81707979 | None:intergenic |
| TTCCTTTGGAGGCTGATAAT+GGG | 0.385699 | 3_3:-81707927 | Msa0477500:CDS |
| CACATTGAGTATCGTTAAAA+CGG | 0.391410 | 3_3:+81710684 | None:intergenic |
| GGGCCGACTACAACAGTTAC+AGG | 0.393205 | 3_3:+81708489 | None:intergenic |
| TAGAAGAAGGTAGTTCATAC+TGG | 0.406703 | 3_3:+81710708 | None:intergenic |
| ATATGAGCCTCCTCTGACTC+AGG | 0.426109 | 3_3:+81708240 | None:intergenic |
| AATTAAGCCAGGAACACTTT+CGG | 0.439258 | 3_3:-81707824 | Msa0477500:CDS |
| TGTGAAGATGCAAGCATTCA+AGG | 0.445435 | 3_3:-81708195 | Msa0477500:CDS |
| ATCGACTTCCAGTAAAGTTC+AGG | 0.453981 | 3_3:+81708952 | None:intergenic |
| AATGCAGGCCATAAGAGAAA+AGG | 0.465236 | 3_3:-81708516 | Msa0477500:CDS |
| GAAGCTAACTGCAAGGGATA+AGG | 0.466640 | 3_3:-81708028 | Msa0477500:CDS |
| GACAATAAAATATAGCATAA+GGG | 0.473806 | 3_3:+81707980 | None:intergenic |
| AAAGCAGTGCAAATTATTCA+AGG | 0.475657 | 3_3:+81707712 | None:intergenic |
| AAGAAGAATAATGCTGCTCT+AGG | 0.481299 | 3_3:+81708411 | None:intergenic |
| TAAAGCTGCAACCTAAAGCT+TGG | 0.485558 | 3_3:+81710738 | None:intergenic |
| CAAGTCCTCAAAATTAAGCC+AGG | 0.485589 | 3_3:-81707835 | Msa0477500:CDS |
| AATGTCAACGTTGGTGGCGG+AGG | 0.492842 | 3_3:-81708549 | Msa0477500:CDS |
| ACCCAAACAATGTGATCCTC+AGG | 0.494013 | 3_3:+81707787 | None:intergenic |
| AAGTGTTAAGGTTGTGTCTA+CGG | 0.496910 | 3_3:-81708106 | Msa0477500:CDS |
| ATGCAGGCCATAAGAGAAAA+GGG | 0.500977 | 3_3:-81708515 | Msa0477500:CDS |
| GCAGCATAGTTGTAAGCAAA+AGG | 0.504895 | 3_3:+81708459 | None:intergenic |
| ACATTGAGTATCGTTAAAAC+GGG | 0.510823 | 3_3:+81710685 | None:intergenic |
| AGTGCAAATTATTCAAGGAC+GGG | 0.517929 | 3_3:+81707717 | None:intergenic |
| ACCTCAGTGAATGTTGGAAA+AGG | 0.526849 | 3_3:-81708603 | Msa0477500:CDS |
| AAAGCACAAATGTGGGTGTA+GGG | 0.529632 | 3_3:-81708674 | Msa0477500:CDS |
| AAAAGCACAAATGTGGGTGT+AGG | 0.540367 | 3_3:-81708675 | Msa0477500:CDS |
| TAATTACTATGCAGATTGGA+TGG | 0.542568 | 3_3:-81708703 | Msa0477500:intron |
| CATTAGCACCTCTTCCTGCA+TGG | 0.546194 | 3_3:+81708568 | None:intergenic |
| AATACATACATAACACATCA+TGG | 0.546492 | 3_3:+81707632 | None:intergenic |
| GTGGTAGACAACAAGAGTGC+AGG | 0.547753 | 3_3:-81708084 | Msa0477500:CDS |
| TATCATGAAGAATACTATTG+AGG | 0.553333 | 3_3:-81708220 | Msa0477500:CDS |
| GGTGCTAATGTCAACGTTGG+TGG | 0.555909 | 3_3:-81708555 | Msa0477500:CDS |
| GTAAATGTCCATGCAGGAAG+AGG | 0.558239 | 3_3:-81708576 | Msa0477500:CDS |
| AAAGGAACCTCAGTGAATGT+TGG | 0.559650 | 3_3:-81708609 | Msa0477500:CDS |
| GGAGGAGTTTCTGTAAATGC+AGG | 0.560589 | 3_3:-81708531 | Msa0477500:CDS |
| TCGTTAAAACGGGTAGAAGA+AGG | 0.561572 | 3_3:+81710695 | None:intergenic |
| TTGTAAGCAAAAGGTGAGTG+TGG | 0.562836 | 3_3:+81708468 | None:intergenic |
| CTTGAAAAGCAAGGTGTTTG+GGG | 0.564512 | 3_3:+81707854 | None:intergenic |
| CTCTGTCAAACCTGAGTCAG+AGG | 0.567620 | 3_3:-81708250 | Msa0477500:CDS |
| GCTAATGTCAACGTTGGTGG+CGG | 0.568034 | 3_3:-81708552 | Msa0477500:CDS |
| GGAAGACAAAAGCACAAATG+TGG | 0.569047 | 3_3:-81708682 | Msa0477500:CDS |
| AGAAGAAGGTAGTTCATACT+GGG | 0.569084 | 3_3:+81710709 | None:intergenic |
| CAGTGCAAATTATTCAAGGA+CGG | 0.569864 | 3_3:+81707716 | None:intergenic |
| TGCAACCTCACTAGAATCCA+TGG | 0.570382 | 3_3:-81708157 | Msa0477500:CDS |
| GGTCTGCCACTTTCTTCCTG+AGG | 0.571878 | 3_3:-81707803 | Msa0477500:CDS |
| ACAAATGTGGGTGTAGGGAA+AGG | 0.577909 | 3_3:-81708669 | Msa0477500:CDS |
| AGAAGAATAATGCTGCTCTA+GGG | 0.587688 | 3_3:+81708412 | None:intergenic |
| GACTAGAGTTAAAGCTGTAG+TGG | 0.589350 | 3_3:-81707905 | Msa0477500:CDS |
| GATTAATGAAGCTAACTGCA+AGG | 0.590558 | 3_3:-81708035 | Msa0477500:CDS |
| GGAGGTGTAAATGTCCATGC+AGG | 0.591971 | 3_3:-81708582 | Msa0477500:CDS |
| TCAGTGAATGTTGGAAAAGG+AGG | 0.592815 | 3_3:-81708600 | Msa0477500:CDS |
| AGGGTGGAGGATATCAGTTA+TGG | 0.593886 | 3_3:+81708903 | None:intergenic |
| TGTGATCCTCAGGAAGAAAG+TGG | 0.602472 | 3_3:+81707797 | None:intergenic |
| CAAAATGCTAAAATCAACCA+TGG | 0.604927 | 3_3:+81708140 | None:intergenic |
| ATTAATGAAGCTAACTGCAA+GGG | 0.605328 | 3_3:-81708034 | Msa0477500:CDS |
| GTGTAATATTATATATAGTG+TGG | 0.606788 | 3_3:-81707589 | Msa0477500:three_prime_UTR |
| ACATGTACTAACCAGGGTGG+AGG | 0.617776 | 3_3:+81708890 | None:intergenic |
| GAAGACAAAAGCACAAATGT+GGG | 0.625768 | 3_3:-81708681 | Msa0477500:CDS |
| AAGCCTGTAACTGTTGTAGT+CGG | 0.628465 | 3_3:-81708492 | Msa0477500:CDS |
| GTCCCATTATCAGCCTCCAA+AGG | 0.629122 | 3_3:+81707925 | None:intergenic |
| AGATGCAAGCATTCAAGGCG+AGG | 0.630805 | 3_3:-81708190 | Msa0477500:CDS |
| GTTGATACAGTCACAGACAA+AGG | 0.632167 | 3_3:-81708636 | Msa0477500:CDS |
| TGTAAGCAAAAGGTGAGTGT+GGG | 0.633749 | 3_3:+81708469 | None:intergenic |
| AATGTGGGTGTAGGGAAAGG+TGG | 0.637127 | 3_3:-81708666 | Msa0477500:CDS |
| GACTTCCAGTAAAGTTCAGG+AGG | 0.638849 | 3_3:+81708955 | None:intergenic |
| GTCACAGACAAAGGACCCAA+AGG | 0.638917 | 3_3:-81708627 | Msa0477500:CDS |
| GTGCAAATTATTCAAGGACG+GGG | 0.639089 | 3_3:+81707718 | None:intergenic |
| ATCAACCATGGATTCTAGTG+AGG | 0.640745 | 3_3:+81708152 | None:intergenic |
| TGGTAGACAACAAGAGTGCA+GGG | 0.641519 | 3_3:-81708083 | Msa0477500:CDS |
| TGTCAAACCTGAGTCAGAGG+AGG | 0.656571 | 3_3:-81708247 | Msa0477500:CDS |
| GTTGCAGACGCTACTTGTCG+AGG | 0.661539 | 3_3:+81708315 | None:intergenic |
| AGAGGTGCTAATGTCAACGT+TGG | 0.663899 | 3_3:-81708558 | Msa0477500:CDS |
| ATCATGTAATTGAGTCTCAG+TGG | 0.679850 | 3_3:+81708437 | None:intergenic |
| TGTTAAGGTTGTGTCTACGG+TGG | 0.716693 | 3_3:-81708103 | Msa0477500:CDS |
| AATACATGTACTAACCAGGG+TGG | 0.721016 | 3_3:+81708887 | None:intergenic |
| ATAACTGATATCCTCCACCC+TGG | 0.725267 | 3_3:-81708901 | Msa0477500:intron |
| TACTTGTCGAGGCAAGAATG+CGG | 0.729595 | 3_3:+81708326 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAT+TGG | + | chr3_3:81708838-81708857 | None:intergenic | 0.0% |
| !!! | TATCTTTTTTTTTTTTTTGA+AGG | - | chr3_3:81707840-81707859 | Msa0477500:CDS | 10.0% |
| !!! | ACGTTTTAAAAAAAAATAAT+AGG | + | chr3_3:81708586-81708605 | None:intergenic | 10.0% |
| !!! | TATTTTTTTTTAAAACGTTT+TGG | - | chr3_3:81708588-81708607 | Msa0477500:CDS | 10.0% |
| !!! | TATTAGTTTATAATATATAG+GGG | - | chr3_3:81708810-81708829 | Msa0477500:intron | 10.0% |
| !!! | TTTTTTTTTTTTTGAAAGTA+TGG | - | chr3_3:81708845-81708864 | Msa0477500:intron | 10.0% |
| !!! | TGATTTTTTTAATTTTATCT+CGG | - | chr3_3:81709157-81709176 | Msa0477500:intron | 10.0% |
| !!! | ATTCTTAGTTGATAATATTA+TGG | - | chr3_3:81707930-81707949 | Msa0477500:CDS | 15.0% |
| !!! | TGCTTTTAATGATATTTTTT+TGG | - | chr3_3:81708344-81708363 | Msa0477500:CDS | 15.0% |
| !! | GGAAATATATGATAAAATAA+TGG | - | chr3_3:81708542-81708561 | Msa0477500:CDS | 15.0% |
| !!! | TTTATTAGACATTATTTTGT+TGG | - | chr3_3:81708692-81708711 | Msa0477500:CDS | 15.0% |
| !!! | ATTAGTTTATAATATATAGG+GGG | - | chr3_3:81708811-81708830 | Msa0477500:intron | 15.0% |
| !!! | TGATATATTTTGTAATGTTA+TGG | - | chr3_3:81708950-81708969 | Msa0477500:CDS | 15.0% |
| !!! | GATATATTTTGTAATGTTAT+GGG | - | chr3_3:81708951-81708970 | Msa0477500:CDS | 15.0% |
| !! | TTTAACAAAAATATCTTCAA+TGG | + | chr3_3:81709564-81709583 | None:intergenic | 15.0% |
| !! | ATATACTGTACTAATTAATT+TGG | + | chr3_3:81710573-81710592 | None:intergenic | 15.0% |
| !! | CAATTTCCTAATACAAATAA+AGG | + | chr3_3:81707777-81707796 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTGAAGGAAG+TGG | - | chr3_3:81707846-81707865 | Msa0477500:CDS | 20.0% |
| !!! | TTTTTTTTTTTGAAGGAAGT+GGG | - | chr3_3:81707847-81707866 | Msa0477500:CDS | 20.0% |
| !! | TATTATGGTGTATGTTTAAA+AGG | - | chr3_3:81707945-81707964 | Msa0477500:CDS | 20.0% |
| !! | GTTATGATTTAAATCAATTG+TGG | - | chr3_3:81707973-81707992 | Msa0477500:CDS | 20.0% |
| !! | AATTTCAGTTAAAAAAGTGA+TGG | - | chr3_3:81708190-81708209 | Msa0477500:CDS | 20.0% |
| !!! | TAGTTGTTTTGTTTATGTTT+TGG | - | chr3_3:81708225-81708244 | Msa0477500:CDS | 20.0% |
| !! | AAAAGCAAAATACAAACATA+AGG | + | chr3_3:81708331-81708350 | None:intergenic | 20.0% |
| !!! | CTAGTTTTAAGTAATATTTG+AGG | - | chr3_3:81708521-81708540 | Msa0477500:CDS | 20.0% |
| !!! | CAAAAAATCGACTTTTAAAA+AGG | + | chr3_3:81708618-81708637 | None:intergenic | 20.0% |
| !! | ATGTTATCACAAGATTTATA+TGG | + | chr3_3:81708736-81708755 | None:intergenic | 20.0% |
| !! | ACGGAAATAAAAATGAAATT+AGG | - | chr3_3:81708780-81708799 | Msa0477500:intron | 20.0% |
| !! | ATTATAATTACTATGCAGAT+TGG | - | chr3_3:81709626-81709645 | Msa0477500:intron | 20.0% |
| !!! | AAAAATATGACTCAACTTTT+CGG | + | chr3_3:81710055-81710074 | None:intergenic | 20.0% |
| !! | AAAAAATACACACTAAAATC+AGG | - | chr3_3:81710276-81710295 | Msa0477500:intron | 20.0% |
| !! | GACAATAAAATATAGCATAA+GGG | + | chr3_3:81710356-81710375 | None:intergenic | 20.0% |
| !! | TGACAATAAAATATAGCATA+AGG | + | chr3_3:81710357-81710376 | None:intergenic | 20.0% |
| !!! | ATTAGTACAGTATATTTTAG+TGG | - | chr3_3:81710578-81710597 | Msa0477500:intron | 20.0% |
| !! | GTGTAATATTATATATAGTG+TGG | - | chr3_3:81710744-81710763 | Msa0477500:five_prime_UTR | 20.0% |
| !!! | AAATATTTCTCTTCAAGTTG+TGG | - | chr3_3:81707708-81707727 | Msa0477500:three_prime_UTR | 25.0% |
| !! | GTTTCTCCTTTATTTGTATT+AGG | - | chr3_3:81707768-81707787 | Msa0477500:exon | 25.0% |
| !! | ATTGTTATTCTTGTTACTGT+AGG | - | chr3_3:81707793-81707812 | Msa0477500:CDS | 25.0% |
| !!! | TTAGACCATTTTGATTGTTT+GGG | - | chr3_3:81707996-81708015 | Msa0477500:CDS | 25.0% |
| !!! | TTGTTTTGTTTATGTTTTGG+TGG | - | chr3_3:81708228-81708247 | Msa0477500:CDS | 25.0% |
| ! | TGATGTAGTCTATTCATTAA+TGG | - | chr3_3:81708659-81708678 | Msa0477500:CDS | 25.0% |
| ! | TGGATTGAATATAGTATGTA+GGG | + | chr3_3:81709274-81709293 | None:intergenic | 25.0% |
| ! | TTGGATTGAATATAGTATGT+AGG | + | chr3_3:81709275-81709294 | None:intergenic | 25.0% |
| !!! | ATTTAATTTGCAGCTTGTAT+TGG | - | chr3_3:81709335-81709354 | Msa0477500:intron | 25.0% |
| ! | TATCATGAAGAATACTATTG+AGG | - | chr3_3:81710113-81710132 | Msa0477500:intron | 25.0% |
| ! | AATACATACATAACACATCA+TGG | + | chr3_3:81710704-81710723 | None:intergenic | 25.0% |
| ! | ACATTGAGTATCGTTAAAAC+GGG | + | chr3_3:81707651-81707670 | None:intergenic | 30.0% |
| ! | CACATTGAGTATCGTTAAAA+CGG | + | chr3_3:81707652-81707671 | None:intergenic | 30.0% |
| !!! | GTTAGACCATTTTGATTGTT+TGG | - | chr3_3:81707995-81708014 | Msa0477500:CDS | 30.0% |
| !! | TAGACATTATTTTGTTGGCT+TGG | - | chr3_3:81708697-81708716 | Msa0477500:intron | 30.0% |
| AGTTAAAATGACTCCGAAAT+GGG | - | chr3_3:81708757-81708776 | Msa0477500:intron | 30.0% | |
| !! | TTTTTATTTCCGTCCCATTT+CGG | + | chr3_3:81708773-81708792 | None:intergenic | 30.0% |
| CTTACTAACTTAGCTCAAAA+TGG | + | chr3_3:81709105-81709124 | None:intergenic | 30.0% | |
| GTATCAATTATCGTAAGCAT+TGG | + | chr3_3:81709294-81709313 | None:intergenic | 30.0% | |
| AAGAATACATGTACTAACCA+GGG | + | chr3_3:81709452-81709471 | None:intergenic | 30.0% | |
| ! | ACATGTATTCTTCAAGTTCA+TGG | - | chr3_3:81709460-81709479 | Msa0477500:intron | 30.0% |
| TAATTACTATGCAGATTGGA+TGG | - | chr3_3:81709630-81709649 | Msa0477500:intron | 30.0% | |
| CAAAATGCTAAAATCAACCA+TGG | + | chr3_3:81710196-81710215 | None:intergenic | 30.0% | |
| !!! | GATTTTAGCATTTTGAAGCT+TGG | - | chr3_3:81710201-81710220 | Msa0477500:intron | 30.0% |
| ATTAATGAAGCTAACTGCAA+GGG | - | chr3_3:81710299-81710318 | Msa0477500:intron | 30.0% | |
| AAAGCAGTGCAAATTATTCA+AGG | + | chr3_3:81710624-81710643 | None:intergenic | 30.0% | |
| TGTATTTGCAACCAAGCTTT+AGG | - | chr3_3:81707584-81707603 | Msa0477500:three_prime_UTR | 35.0% | |
| AGAAGAAGGTAGTTCATACT+GGG | + | chr3_3:81707627-81707646 | None:intergenic | 35.0% | |
| TAGAAGAAGGTAGTTCATAC+TGG | + | chr3_3:81707628-81707647 | None:intergenic | 35.0% | |
| GGTGTATGTTTAAAAGGCTT+TGG | - | chr3_3:81707951-81707970 | Msa0477500:CDS | 35.0% | |
| CAACACCCAAACAATCAAAA+TGG | + | chr3_3:81708004-81708023 | None:intergenic | 35.0% | |
| !! | TTTTGATTGTTTGGGTGTTG+AGG | - | chr3_3:81708004-81708023 | Msa0477500:CDS | 35.0% |
| !! | ATGTTTTCCTCGTTGTTGTT+TGG | - | chr3_3:81708041-81708060 | Msa0477500:CDS | 35.0% |
| AAGCTGGAAATTGTAGAGTT+TGG | + | chr3_3:81708135-81708154 | None:intergenic | 35.0% | |
| ! | TTCCAGCTTCACATTTTTCA+CGG | - | chr3_3:81708146-81708165 | Msa0477500:CDS | 35.0% |
| !!! | TGCACATTTTTGTGTTGCTT+TGG | - | chr3_3:81708251-81708270 | Msa0477500:CDS | 35.0% |
| CAGTTAAAATGACTCCGAAA+TGG | - | chr3_3:81708756-81708775 | Msa0477500:intron | 35.0% | |
| ! | AGGATATCAGTTATGGCTTT+TGG | + | chr3_3:81709426-81709445 | None:intergenic | 35.0% |
| GAAGAATACATGTACTAACC+AGG | + | chr3_3:81709453-81709472 | None:intergenic | 35.0% | |
| CAAGTTCATGGTTCATTCTA+TGG | - | chr3_3:81709472-81709491 | Msa0477500:intron | 35.0% | |
| CATGGTTCATTCTATGGTAA+AGG | - | chr3_3:81709478-81709497 | Msa0477500:intron | 35.0% | |
| ! | GAAGACAAAAGCACAAATGT+GGG | - | chr3_3:81709652-81709671 | Msa0477500:intron | 35.0% |
| ATCATGTAATTGAGTCTCAG+TGG | + | chr3_3:81709899-81709918 | None:intergenic | 35.0% | |
| AGAAGAATAATGCTGCTCTA+GGG | + | chr3_3:81709924-81709943 | None:intergenic | 35.0% | |
| AAGAAGAATAATGCTGCTCT+AGG | + | chr3_3:81709925-81709944 | None:intergenic | 35.0% | |
| TAGAGCAGCATTATTCTTCT+TGG | - | chr3_3:81709924-81709943 | Msa0477500:intron | 35.0% | |
| !! | TTCAAGTCCATTTTTGTTCC+AGG | + | chr3_3:81709964-81709983 | None:intergenic | 35.0% |
| ! | CTCAACTTTTCGGATGAAAA+TGG | + | chr3_3:81710045-81710064 | None:intergenic | 35.0% |
| !! | GAAGCTTGGAAAAAGTGTTA+AGG | - | chr3_3:81710215-81710234 | Msa0477500:intron | 35.0% |
| AAGTGTTAAGGTTGTGTCTA+CGG | - | chr3_3:81710227-81710246 | Msa0477500:intron | 35.0% | |
| GATTAATGAAGCTAACTGCA+AGG | - | chr3_3:81710298-81710317 | Msa0477500:intron | 35.0% | |
| AAGAGCTTATTCTGTTCCTT+TGG | - | chr3_3:81710392-81710411 | Msa0477500:intron | 35.0% | |
| !!! | TCCATTTTGAAGTATCTGTG+TGG | + | chr3_3:81710458-81710477 | None:intergenic | 35.0% |
| ! | ACTTGAAAAGCAAGGTGTTT+GGG | + | chr3_3:81710483-81710502 | None:intergenic | 35.0% |
| !! | TTTTGAGGACTTGAAAAGCA+AGG | + | chr3_3:81710491-81710510 | None:intergenic | 35.0% |
| AATTAAGCCAGGAACACTTT+CGG | - | chr3_3:81710509-81710528 | Msa0477500:intron | 35.0% | |
| AGTGCAAATTATTCAAGGAC+GGG | + | chr3_3:81710619-81710638 | None:intergenic | 35.0% | |
| CAGTGCAAATTATTCAAGGA+CGG | + | chr3_3:81710620-81710639 | None:intergenic | 35.0% | |
| TAAAGCTGCAACCTAAAGCT+TGG | + | chr3_3:81707598-81707617 | None:intergenic | 40.0% | |
| TCGTTAAAACGGGTAGAAGA+AGG | + | chr3_3:81707641-81707660 | None:intergenic | 40.0% | |
| AGGCTATATAGCTAGAGAAG+TGG | - | chr3_3:81707813-81707832 | Msa0477500:CDS | 40.0% | |
| GGCTATATAGCTAGAGAAGT+GGG | - | chr3_3:81707814-81707833 | Msa0477500:CDS | 40.0% | |
| !! | TTCCTCGTTGTTGTTTGGTT+TGG | - | chr3_3:81708046-81708065 | Msa0477500:CDS | 40.0% |
| ! | AGTTTGGCAAAACGTGGTTT+TGG | + | chr3_3:81708119-81708138 | None:intergenic | 40.0% |
| TTGTAGAGTTTGGCAAAACG+TGG | + | chr3_3:81708125-81708144 | None:intergenic | 40.0% | |
| ! | TTTTCACGGTGGAAATGCAT+TGG | - | chr3_3:81708160-81708179 | Msa0477500:CDS | 40.0% |
| !! | CTTTGGTCTTACTCTGTGAT+GGG | - | chr3_3:81708268-81708287 | Msa0477500:CDS | 40.0% |
| AAAATGACTCCGAAATGGGA+CGG | - | chr3_3:81708761-81708780 | Msa0477500:intron | 40.0% | |
| CTTTACCTCCTGAACTTTAC+TGG | - | chr3_3:81709373-81709392 | Msa0477500:intron | 40.0% | |
| ! | ATCGACTTCCAGTAAAGTTC+AGG | + | chr3_3:81709384-81709403 | None:intergenic | 40.0% |
| ! | TCAGTTATGGCTTTTGGCAT+TGG | + | chr3_3:81709420-81709439 | None:intergenic | 40.0% |
| AATACATGTACTAACCAGGG+TGG | + | chr3_3:81709449-81709468 | None:intergenic | 40.0% | |
| ! | GGAAGACAAAAGCACAAATG+TGG | - | chr3_3:81709651-81709670 | Msa0477500:intron | 40.0% |
| ! | AAAAGCACAAATGTGGGTGT+AGG | - | chr3_3:81709658-81709677 | Msa0477500:intron | 40.0% |
| AAAGCACAAATGTGGGTGTA+GGG | - | chr3_3:81709659-81709678 | Msa0477500:intron | 40.0% | |
| GTTGATACAGTCACAGACAA+AGG | - | chr3_3:81709697-81709716 | Msa0477500:intron | 40.0% | |
| ACATTCACTGAGGTTCCTTT+GGG | + | chr3_3:81709724-81709743 | None:intergenic | 40.0% | |
| AACATTCACTGAGGTTCCTT+TGG | + | chr3_3:81709725-81709744 | None:intergenic | 40.0% | |
| AAAGGAACCTCAGTGAATGT+TGG | - | chr3_3:81709724-81709743 | Msa0477500:intron | 40.0% | |
| ACCTCAGTGAATGTTGGAAA+AGG | - | chr3_3:81709730-81709749 | Msa0477500:intron | 40.0% | |
| ! | TCCTTTTCCAACATTCACTG+AGG | + | chr3_3:81709734-81709753 | None:intergenic | 40.0% |
| TCAGTGAATGTTGGAAAAGG+AGG | - | chr3_3:81709733-81709752 | Msa0477500:intron | 40.0% | |
| AATGCAGGCCATAAGAGAAA+AGG | - | chr3_3:81709817-81709836 | Msa0477500:intron | 40.0% | |
| ATGCAGGCCATAAGAGAAAA+GGG | - | chr3_3:81709818-81709837 | Msa0477500:intron | 40.0% | |
| AAGCCTGTAACTGTTGTAGT+CGG | - | chr3_3:81709841-81709860 | Msa0477500:intron | 40.0% | |
| TGTAAGCAAAAGGTGAGTGT+GGG | + | chr3_3:81709867-81709886 | None:intergenic | 40.0% | |
| TTGTAAGCAAAAGGTGAGTG+TGG | + | chr3_3:81709868-81709887 | None:intergenic | 40.0% | |
| GCAGCATAGTTGTAAGCAAA+AGG | + | chr3_3:81709877-81709896 | None:intergenic | 40.0% | |
| TTGGAAAAAGACTTGCATCC+TGG | - | chr3_3:81709943-81709962 | Msa0477500:intron | 40.0% | |
| CTTGCATCCTGGAACAAAAA+TGG | - | chr3_3:81709954-81709973 | Msa0477500:intron | 40.0% | |
| TGTGAAGATGCAAGCATTCA+AGG | - | chr3_3:81710138-81710157 | Msa0477500:intron | 40.0% | |
| ATCAACCATGGATTCTAGTG+AGG | + | chr3_3:81710184-81710203 | None:intergenic | 40.0% | |
| AGCTTATTCTGTTCCTTTGG+AGG | - | chr3_3:81710395-81710414 | Msa0477500:intron | 40.0% | |
| ! | TTCCTTTGGAGGCTGATAAT+GGG | - | chr3_3:81710406-81710425 | Msa0477500:intron | 40.0% |
| GACTAGAGTTAAAGCTGTAG+TGG | - | chr3_3:81710428-81710447 | Msa0477500:intron | 40.0% | |
| GCCACACAGATACTTCAAAA+TGG | - | chr3_3:81710454-81710473 | Msa0477500:intron | 40.0% | |
| ! | CTTGAAAAGCAAGGTGTTTG+GGG | + | chr3_3:81710482-81710501 | None:intergenic | 40.0% |
| ! | GACTTGAAAAGCAAGGTGTT+TGG | + | chr3_3:81710484-81710503 | None:intergenic | 40.0% |
| CAAGTCCTCAAAATTAAGCC+AGG | - | chr3_3:81710498-81710517 | Msa0477500:intron | 40.0% | |
| ! | GTGTTCCTGGCTTAATTTTG+AGG | + | chr3_3:81710506-81710525 | None:intergenic | 40.0% |
| TTCCTGAGGATCACATTGTT+TGG | - | chr3_3:81710544-81710563 | Msa0477500:intron | 40.0% | |
| TCCTGAGGATCACATTGTTT+GGG | - | chr3_3:81710545-81710564 | Msa0477500:intron | 40.0% | |
| TTATTCAAGGACGGGGTAAA+AGG | + | chr3_3:81710611-81710630 | None:intergenic | 40.0% | |
| GTGCAAATTATTCAAGGACG+GGG | + | chr3_3:81710618-81710637 | None:intergenic | 40.0% | |
| ! | AGGAAGTGGGCAGTATCTTT+TGG | - | chr3_3:81707860-81707879 | Msa0477500:CDS | 45.0% |
| !!! | TTGGGTGTTGAGGAGTGTTT+TGG | - | chr3_3:81708014-81708033 | Msa0477500:CDS | 45.0% |
| CACCAAACCAAACAACAACG+AGG | + | chr3_3:81708051-81708070 | None:intergenic | 45.0% | |
| !! | CTCGTTGTTGTTTGGTTTGG+TGG | - | chr3_3:81708049-81708068 | Msa0477500:CDS | 45.0% |
| TTAGTGCCTGTTTGCCATCA+CGG | - | chr3_3:81708083-81708102 | Msa0477500:CDS | 45.0% | |
| !!! | TGGCAAAACGTGGTTTTGGT+GGG | + | chr3_3:81708115-81708134 | None:intergenic | 45.0% |
| !!! | TTGGCAAAACGTGGTTTTGG+TGG | + | chr3_3:81708116-81708135 | None:intergenic | 45.0% |
| CACCGTGAAAAATGTGAAGC+TGG | + | chr3_3:81708151-81708170 | None:intergenic | 45.0% | |
| ! | CAGCTTCACATTTTTCACGG+TGG | - | chr3_3:81708149-81708168 | Msa0477500:CDS | 45.0% |
| !! | GCTTTGGTCTTACTCTGTGA+TGG | - | chr3_3:81708267-81708286 | Msa0477500:CDS | 45.0% |
| GACTTCCAGTAAAGTTCAGG+AGG | + | chr3_3:81709381-81709400 | None:intergenic | 45.0% | |
| AGGGTGGAGGATATCAGTTA+TGG | + | chr3_3:81709433-81709452 | None:intergenic | 45.0% | |
| ATAACTGATATCCTCCACCC+TGG | - | chr3_3:81709432-81709451 | Msa0477500:intron | 45.0% | |
| ACAAATGTGGGTGTAGGGAA+AGG | - | chr3_3:81709664-81709683 | Msa0477500:intron | 45.0% | |
| GTAAATGTCCATGCAGGAAG+AGG | - | chr3_3:81709757-81709776 | Msa0477500:intron | 45.0% | |
| !! | AGAGGTGCTAATGTCAACGT+TGG | - | chr3_3:81709775-81709794 | Msa0477500:intron | 45.0% |
| GGAGGAGTTTCTGTAAATGC+AGG | - | chr3_3:81709802-81709821 | Msa0477500:intron | 45.0% | |
| ! | CAGGCTTCCCTTTTCTCTTA+TGG | + | chr3_3:81709828-81709847 | None:intergenic | 45.0% |
| TACTTGTCGAGGCAAGAATG+CGG | + | chr3_3:81710010-81710029 | None:intergenic | 45.0% | |
| TGCAACCTCACTAGAATCCA+TGG | - | chr3_3:81710176-81710195 | Msa0477500:intron | 45.0% | |
| TGTTAAGGTTGTGTCTACGG+TGG | - | chr3_3:81710230-81710249 | Msa0477500:intron | 45.0% | |
| ! | TGGTAGACAACAAGAGTGCA+GGG | - | chr3_3:81710250-81710269 | Msa0477500:intron | 45.0% |
| GAAGCTAACTGCAAGGGATA+AGG | - | chr3_3:81710305-81710324 | Msa0477500:intron | 45.0% | |
| ! | GTTCCTTTGGAGGCTGATAA+TGG | - | chr3_3:81710405-81710424 | Msa0477500:intron | 45.0% |
| TGTGATCCTCAGGAAGAAAG+TGG | + | chr3_3:81710539-81710558 | None:intergenic | 45.0% | |
| ACCCAAACAATGTGATCCTC+AGG | + | chr3_3:81710549-81710568 | None:intergenic | 45.0% | |
| !!! | AATTCAATATTTTTTTTTTT+TGG | - | chr3_3:81707889-81707908 | Msa0477500:CDS | 5.0% |
| !!! | TATATTATAAACTAATATTT+TGG | + | chr3_3:81708807-81708826 | None:intergenic | 5.0% |
| !!! | AATATTAGTTTATAATATAT+AGG | - | chr3_3:81708808-81708827 | Msa0477500:intron | 5.0% |
| !!! | ATATTAGTTTATAATATATA+GGG | - | chr3_3:81708809-81708828 | Msa0477500:intron | 5.0% |
| !!! | CTAATTATAAATATTATTTT+AGG | + | chr3_3:81708893-81708912 | None:intergenic | 5.0% |
| TATCCACCGTGATGGCAAAC+AGG | + | chr3_3:81708092-81708111 | None:intergenic | 50.0% | |
| !!! | TATGGCTTTTGGCATTGGCG+TGG | + | chr3_3:81709415-81709434 | None:intergenic | 50.0% |
| ACATGTACTAACCAGGGTGG+AGG | + | chr3_3:81709446-81709465 | None:intergenic | 50.0% | |
| AATGTGGGTGTAGGGAAAGG+TGG | - | chr3_3:81709667-81709686 | Msa0477500:intron | 50.0% | |
| GTCACAGACAAAGGACCCAA+AGG | - | chr3_3:81709706-81709725 | Msa0477500:intron | 50.0% | |
| ! | GGAGGTGTAAATGTCCATGC+AGG | - | chr3_3:81709751-81709770 | Msa0477500:intron | 50.0% |
| CATTAGCACCTCTTCCTGCA+TGG | + | chr3_3:81709768-81709787 | None:intergenic | 50.0% | |
| GGTGCTAATGTCAACGTTGG+TGG | - | chr3_3:81709778-81709797 | Msa0477500:intron | 50.0% | |
| ! | GCTAATGTCAACGTTGGTGG+CGG | - | chr3_3:81709781-81709800 | Msa0477500:intron | 50.0% |
| CTCTGTCAAACCTGAGTCAG+AGG | - | chr3_3:81710083-81710102 | Msa0477500:intron | 50.0% | |
| TGTCAAACCTGAGTCAGAGG+AGG | - | chr3_3:81710086-81710105 | Msa0477500:intron | 50.0% | |
| ATATGAGCCTCCTCTGACTC+AGG | + | chr3_3:81710096-81710115 | None:intergenic | 50.0% | |
| AGATGCAAGCATTCAAGGCG+AGG | - | chr3_3:81710143-81710162 | Msa0477500:intron | 50.0% | |
| ! | GTGGTAGACAACAAGAGTGC+AGG | - | chr3_3:81710249-81710268 | Msa0477500:intron | 50.0% |
| GTCCCATTATCAGCCTCCAA+AGG | + | chr3_3:81710411-81710430 | None:intergenic | 50.0% | |
| ! | TTGGTGGGTATCCACCGTGA+TGG | + | chr3_3:81708100-81708119 | None:intergenic | 55.0% |
| !!! | GCTTTTGGCATTGGCGTGGT+AGG | + | chr3_3:81709411-81709430 | None:intergenic | 55.0% |
| !! | AATGTCAACGTTGGTGGCGG+AGG | - | chr3_3:81709784-81709803 | Msa0477500:intron | 55.0% |
| GGGCCGACTACAACAGTTAC+AGG | + | chr3_3:81709847-81709866 | None:intergenic | 55.0% | |
| GTTGCAGACGCTACTTGTCG+AGG | + | chr3_3:81710021-81710040 | None:intergenic | 55.0% | |
| !! | TGGCAGACCGAAAGTGTTCC+TGG | + | chr3_3:81710519-81710538 | None:intergenic | 55.0% |
| !! | GGTCTGCCACTTTCTTCCTG+AGG | - | chr3_3:81710530-81710549 | Msa0477500:intron | 55.0% |
| GTGCCTGTTTGCCATCACGG+TGG | - | chr3_3:81708086-81708105 | Msa0477500:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 81707582 | 81710773 | 81707582 | ID=Msa0477500;Name=Msa0477500 |
| chr3_3 | mRNA | 81707582 | 81710773 | 81707582 | ID=Msa0477500-mRNA-1;Parent=Msa0477500;Name=Msa0477500-mRNA-1;_AED=0.03;_eAED=0.03;_QI=48|1|1|1|1|1|3|195|359 |
| chr3_3 | exon | 81707582 | 81708711 | 81707582 | ID=Msa0477500-mRNA-1:exon:22612;Parent=Msa0477500-mRNA-1 |
| chr3_3 | exon | 81708902 | 81709007 | 81708902 | ID=Msa0477500-mRNA-1:exon:22611;Parent=Msa0477500-mRNA-1 |
| chr3_3 | exon | 81710687 | 81710773 | 81710687 | ID=Msa0477500-mRNA-1:exon:22610;Parent=Msa0477500-mRNA-1 |
| chr3_3 | five_prime_UTR | 81710726 | 81710773 | 81710726 | ID=Msa0477500-mRNA-1:five_prime_utr;Parent=Msa0477500-mRNA-1 |
| chr3_3 | CDS | 81710687 | 81710725 | 81710687 | ID=Msa0477500-mRNA-1:cds;Parent=Msa0477500-mRNA-1 |
| chr3_3 | CDS | 81708902 | 81709007 | 81708902 | ID=Msa0477500-mRNA-1:cds;Parent=Msa0477500-mRNA-1 |
| chr3_3 | CDS | 81707777 | 81708711 | 81707777 | ID=Msa0477500-mRNA-1:cds;Parent=Msa0477500-mRNA-1 |
| chr3_3 | three_prime_UTR | 81707582 | 81707776 | 81707582 | ID=Msa0477500-mRNA-1:three_prime_utr;Parent=Msa0477500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
