Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343210 | XP_024633614.1 | 95.433 | 416 | 19 | 0 | 1 | 416 | 1 | 416 | 0.0 | 822 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343210 | sp|A0A2P1GIW7|SAT_CATRO | 36.557 | 424 | 238 | 11 | 1 | 407 | 1 | 410 | 4.03e-85 | 269 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343210 | G7J2I5 | 95.433 | 416 | 19 | 0 | 1 | 416 | 1 | 416 | 0.0 | 822 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016070 | Msa0343210 | 0.804916 | 1.716525e-49 | -8.615850e-47 |
| Msa0016080 | Msa0343210 | 0.808795 | 2.598457e-50 | -8.615850e-47 |
| Msa0028690 | Msa0343210 | 0.817263 | 3.611526e-52 | -8.615850e-47 |
| Msa0041630 | Msa0343210 | 0.812843 | 3.456684e-51 | -8.615850e-47 |
| Msa0060670 | Msa0343210 | 0.825169 | 5.427435e-54 | -8.615850e-47 |
| Msa0072180 | Msa0343210 | 0.806936 | 6.457520e-50 | -8.615850e-47 |
| Msa0105410 | Msa0343210 | 0.813715 | 2.223958e-51 | -8.615850e-47 |
| Msa0117560 | Msa0343210 | 0.831343 | 1.761984e-55 | -8.615850e-47 |
| Msa0119240 | Msa0343210 | 0.828793 | 7.378153e-55 | -8.615850e-47 |
| Msa0151660 | Msa0343210 | 0.808169 | 3.533934e-50 | -8.615850e-47 |
| Msa0187540 | Msa0343210 | 0.815376 | 9.545140e-52 | -8.615850e-47 |
| Msa0210610 | Msa0343210 | 0.866200 | 3.392184e-65 | -8.615850e-47 |
| Msa0217060 | Msa0343210 | 0.835612 | 1.515943e-56 | -8.615850e-47 |
| Msa0218500 | Msa0343210 | 0.808294 | 3.324784e-50 | -8.615850e-47 |
| Msa0219340 | Msa0343210 | 0.805517 | 1.284787e-49 | -8.615850e-47 |
| Msa0235290 | Msa0343210 | 0.812465 | 4.182459e-51 | -8.615850e-47 |
| Msa0256920 | Msa0343210 | 0.825051 | 5.786041e-54 | -8.615850e-47 |
| Msa0289960 | Msa0343210 | 0.859349 | 4.399439e-63 | -8.615850e-47 |
| Msa0297910 | Msa0343210 | 0.835122 | 2.016932e-56 | -8.615850e-47 |
| Msa0307740 | Msa0343210 | 0.827072 | 1.914224e-54 | -8.615850e-47 |
| Msa0313900 | Msa0343210 | 0.810603 | 1.062029e-50 | -8.615850e-47 |
| Msa0334630 | Msa0343210 | 0.815723 | 7.989283e-52 | -8.615850e-47 |
| Msa0343210 | Msa0415640 | 0.806012 | 1.011504e-49 | -8.615850e-47 |
| Msa0343210 | Msa0433650 | 0.801747 | 7.781644e-49 | -8.615850e-47 |
| Msa0343210 | Msa0441260 | 0.806716 | 7.187427e-50 | -8.615850e-47 |
| Msa0343210 | Msa0477500 | 0.801989 | 6.939476e-49 | -8.615850e-47 |
| Msa0343210 | Msa0481630 | 0.819346 | 1.218669e-52 | -8.615850e-47 |
| Msa0343210 | Msa0596840 | 0.804827 | 1.791760e-49 | -8.615850e-47 |
| Msa0343210 | Msa0612350 | 0.812029 | 5.207401e-51 | -8.615850e-47 |
| Msa0343210 | Msa0657710 | 0.819924 | 8.995641e-53 | -8.615850e-47 |
| Msa0343210 | Msa0657720 | 0.836742 | 7.831391e-57 | -8.615850e-47 |
| Msa0343210 | Msa0682110 | 0.814433 | 1.544278e-51 | -8.615850e-47 |
| Msa0343210 | Msa0682160 | 0.806543 | 7.818537e-50 | -8.615850e-47 |
| Msa0343210 | Msa0702790 | 0.829893 | 3.989176e-55 | -8.615850e-47 |
| Msa0343210 | Msa0702800 | 0.814266 | 1.681421e-51 | -8.615850e-47 |
| Msa0343210 | Msa0723090 | 0.803298 | 3.726703e-49 | -8.615850e-47 |
| Msa0343210 | Msa0755880 | 0.810063 | 1.388557e-50 | -8.615850e-47 |
| Msa0343210 | Msa0778570 | 0.800785 | 1.224615e-48 | -8.615850e-47 |
| Msa0343210 | Msa0810330 | 0.823150 | 1.617059e-53 | -8.615850e-47 |
| Msa0343210 | Msa0827200 | 0.805574 | 1.250179e-49 | -8.615850e-47 |
| Msa0343210 | Msa0828950 | 0.826608 | 2.471172e-54 | -8.615850e-47 |
| Msa0343210 | Msa0828960 | 0.816482 | 5.406409e-52 | -8.615850e-47 |
| Msa0343210 | Msa0850640 | 0.805627 | 1.218574e-49 | -8.615850e-47 |
| Msa0343210 | Msa0907880 | 0.841134 | 5.710762e-58 | -8.615850e-47 |
| Msa0343210 | Msa0931620 | 0.816335 | 5.830850e-52 | -8.615850e-47 |
| Msa0343210 | Msa1092310 | 0.815714 | 8.026627e-52 | -8.615850e-47 |
| Msa0343210 | Msa1094410 | 0.801396 | 9.184743e-49 | -8.615850e-47 |
| Msa0343210 | Msa1114670 | 0.801942 | 7.094901e-49 | -8.615850e-47 |
| Msa0343210 | Msa1131270 | 0.813618 | 2.336570e-51 | -8.615850e-47 |
| Msa0343210 | Msa1202800 | 0.831412 | 1.693737e-55 | -8.615850e-47 |
| Msa0343210 | Msa1203440 | 0.817354 | 3.443931e-52 | -8.615850e-47 |
| Msa0343210 | Msa1238600 | 0.812961 | 3.256723e-51 | -8.615850e-47 |
| Msa0343210 | Msa1238660 | 0.817186 | 3.758232e-52 | -8.615850e-47 |
| Msa0343210 | Msa1255210 | 0.834480 | 2.925381e-56 | -8.615850e-47 |
| Msa0343210 | Msa1295650 | 0.833146 | 6.305957e-56 | -8.615850e-47 |
| Msa0343210 | Msa1319560 | 0.802839 | 4.636667e-49 | -8.615850e-47 |
| Msa0343210 | Msa1326710 | 0.816010 | 6.892389e-52 | -8.615850e-47 |
| Msa0343210 | Msa1413450 | 0.805601 | 1.233631e-49 | -8.615850e-47 |
| Msa0343210 | Msa1430950 | 0.816896 | 4.365361e-52 | -8.615850e-47 |
| Msa0343210 | Msa1433040 | 0.801147 | 1.032771e-48 | -8.615850e-47 |
| Msa0343210 | Msa1433360 | 0.804769 | 1.842437e-49 | -8.615850e-47 |
| Msa0343210 | Msa1439250 | 0.804035 | 2.620339e-49 | -8.615850e-47 |
| Msa0343210 | Msa1439270 | 0.806278 | 8.890890e-50 | -8.615850e-47 |
| Msa0343210 | Msa1455200 | 0.803527 | 3.341139e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343210 | MtrunA17_Chr3g0123061 | 95.433 | 416 | 19 | 0 | 1 | 416 | 1 | 416 | 0.0 | 822 |
| Msa0343210 | MtrunA17_Chr8g0376911 | 37.241 | 435 | 238 | 8 | 3 | 411 | 1 | 426 | 6.06e-88 | 273 |
| Msa0343210 | MtrunA17_Chr8g0376891 | 34.873 | 433 | 252 | 11 | 3 | 411 | 1 | 427 | 1.04e-86 | 271 |
| Msa0343210 | MtrunA17_Chr8g0376901 | 36.028 | 433 | 247 | 11 | 3 | 411 | 1 | 427 | 1.49e-86 | 270 |
| Msa0343210 | MtrunA17_Chr5g0438701 | 35.897 | 429 | 247 | 12 | 3 | 411 | 1 | 421 | 2.02e-84 | 265 |
| Msa0343210 | MtrunA17_Chr5g0438681 | 36.343 | 432 | 240 | 9 | 3 | 411 | 1 | 420 | 3.12e-84 | 264 |
| Msa0343210 | MtrunA17_Chr2g0278481 | 32.426 | 441 | 257 | 12 | 3 | 411 | 15 | 446 | 4.36e-68 | 223 |
| Msa0343210 | MtrunA17_Chr1g0199561 | 33.259 | 448 | 249 | 17 | 3 | 411 | 1 | 437 | 2.05e-59 | 200 |
| Msa0343210 | MtrunA17_Chr8g0361771 | 30.317 | 442 | 265 | 14 | 3 | 411 | 1 | 432 | 2.97e-50 | 176 |
| Msa0343210 | MtrunA17_Chr8g0361781 | 29.748 | 437 | 274 | 13 | 3 | 411 | 1 | 432 | 7.21e-46 | 164 |
| Msa0343210 | MtrunA17_Chr4g0001861 | 25.908 | 413 | 260 | 13 | 29 | 405 | 25 | 427 | 1.30e-37 | 141 |
| Msa0343210 | MtrunA17_Chr2g0334001 | 24.009 | 429 | 279 | 14 | 12 | 405 | 10 | 426 | 9.64e-34 | 130 |
| Msa0343210 | MtrunA17_Chr8g0371821 | 26.139 | 417 | 250 | 15 | 29 | 405 | 25 | 423 | 1.72e-33 | 130 |
| Msa0343210 | MtrunA17_Chr7g0224391 | 27.475 | 404 | 242 | 16 | 12 | 382 | 23 | 408 | 1.73e-31 | 124 |
| Msa0343210 | MtrunA17_Chr7g0253501 | 27.443 | 481 | 263 | 23 | 5 | 416 | 2 | 465 | 1.34e-30 | 122 |
| Msa0343210 | MtrunA17_Chr3g0087401 | 28.082 | 438 | 250 | 16 | 5 | 389 | 2 | 427 | 5.02e-30 | 120 |
| Msa0343210 | MtrunA17_Chr8g0386141 | 26.258 | 457 | 267 | 17 | 2 | 416 | 4 | 432 | 1.45e-29 | 119 |
| Msa0343210 | MtrunA17_Chr4g0054081 | 28.537 | 410 | 225 | 18 | 13 | 369 | 17 | 411 | 2.74e-28 | 115 |
| Msa0343210 | MtrunA17_Chr7g0253531 | 25.957 | 470 | 258 | 20 | 5 | 405 | 2 | 450 | 7.62e-27 | 112 |
| Msa0343210 | MtrunA17_Chr5g0438721 | 41.129 | 124 | 68 | 2 | 61 | 180 | 9 | 131 | 6.21e-26 | 102 |
| Msa0343210 | MtrunA17_Chr3g0132001 | 25.117 | 426 | 268 | 16 | 13 | 405 | 22 | 429 | 7.46e-26 | 108 |
| Msa0343210 | MtrunA17_Chr3g0113181 | 26.253 | 419 | 245 | 16 | 51 | 412 | 56 | 467 | 7.56e-25 | 106 |
| Msa0343210 | MtrunA17_Chr2g0311401 | 23.588 | 301 | 192 | 10 | 134 | 405 | 5 | 296 | 1.22e-24 | 103 |
| Msa0343210 | MtrunA17_Chr2g0306321 | 25.298 | 419 | 254 | 16 | 1 | 374 | 14 | 418 | 1.02e-23 | 102 |
| Msa0343210 | MtrunA17_Chr4g0072041 | 27.475 | 404 | 237 | 18 | 13 | 369 | 22 | 416 | 1.74e-23 | 102 |
| Msa0343210 | MtrunA17_Chr7g0253541 | 25.298 | 419 | 245 | 20 | 3 | 365 | 2 | 408 | 2.92e-23 | 101 |
| Msa0343210 | MtrunA17_Chr3g0134111 | 27.553 | 421 | 241 | 22 | 43 | 415 | 47 | 451 | 6.21e-23 | 100 |
| Msa0343210 | MtrunA17_Chr5g0442701 | 26.667 | 435 | 235 | 24 | 2 | 370 | 7 | 423 | 2.56e-22 | 98.6 |
| Msa0343210 | MtrunA17_Chr1g0165671 | 25.063 | 395 | 244 | 18 | 11 | 372 | 33 | 408 | 2.77e-22 | 98.6 |
| Msa0343210 | MtrunA17_Chr4g0053081 | 27.665 | 394 | 231 | 17 | 59 | 411 | 62 | 442 | 3.04e-22 | 98.2 |
| Msa0343210 | MtrunA17_Chr4g0027071 | 25.758 | 462 | 274 | 20 | 3 | 411 | 10 | 455 | 6.23e-22 | 97.4 |
| Msa0343210 | MtrunA17_Chr7g0273781 | 23.341 | 437 | 283 | 20 | 11 | 409 | 49 | 471 | 1.65e-21 | 96.7 |
| Msa0343210 | MtrunA17_Chr3g0134041 | 27.564 | 468 | 256 | 26 | 5 | 415 | 7 | 448 | 4.67e-21 | 94.7 |
| Msa0343210 | MtrunA17_Chr8g0359251 | 25.943 | 424 | 275 | 13 | 22 | 415 | 28 | 442 | 5.79e-21 | 94.4 |
| Msa0343210 | MtrunA17_Chr3g0113821 | 25.060 | 419 | 239 | 17 | 1 | 369 | 1 | 394 | 9.56e-20 | 90.9 |
| Msa0343210 | MtrunA17_Chr5g0408911 | 23.039 | 408 | 249 | 16 | 2 | 366 | 15 | 400 | 2.75e-19 | 89.7 |
| Msa0343210 | MtrunA17_Chr1g0165681 | 26.316 | 399 | 250 | 18 | 4 | 372 | 8 | 392 | 3.71e-19 | 89.4 |
| Msa0343210 | MtrunA17_Chr4g0053111 | 26.133 | 375 | 214 | 15 | 43 | 370 | 44 | 402 | 4.53e-19 | 89.0 |
| Msa0343210 | MtrunA17_Chr1g0165711 | 24.146 | 439 | 247 | 18 | 4 | 409 | 8 | 393 | 1.09e-18 | 87.4 |
| Msa0343210 | MtrunA17_Chr7g0273721 | 22.748 | 444 | 279 | 19 | 11 | 409 | 17 | 441 | 1.39e-18 | 87.4 |
| Msa0343210 | MtrunA17_Chr7g0235531 | 25.551 | 454 | 258 | 23 | 5 | 404 | 4 | 431 | 1.39e-18 | 87.4 |
| Msa0343210 | MtrunA17_Chr4g0010331 | 26.726 | 449 | 266 | 22 | 5 | 411 | 4 | 431 | 2.01e-18 | 87.0 |
| Msa0343210 | MtrunA17_Chr8g0354371 | 26.559 | 433 | 276 | 16 | 15 | 415 | 19 | 441 | 4.02e-17 | 82.8 |
| Msa0343210 | MtrunA17_Chr7g0224131 | 26.754 | 456 | 260 | 24 | 5 | 411 | 4 | 434 | 6.92e-17 | 82.4 |
| Msa0343210 | MtrunA17_Chr5g0433641 | 22.449 | 441 | 283 | 18 | 11 | 409 | 16 | 439 | 1.50e-16 | 81.3 |
| Msa0343210 | MtrunA17_Chr4g0010121 | 26.027 | 438 | 265 | 16 | 4 | 396 | 42 | 465 | 4.79e-16 | 79.7 |
| Msa0343210 | MtrunA17_Chr7g0274021 | 23.204 | 362 | 230 | 11 | 2 | 323 | 5 | 358 | 4.88e-16 | 79.7 |
| Msa0343210 | MtrunA17_Chr1g0191081 | 23.007 | 439 | 294 | 17 | 11 | 415 | 24 | 452 | 1.32e-15 | 78.6 |
| Msa0343210 | MtrunA17_Chr7g0219181 | 24.627 | 402 | 217 | 19 | 61 | 391 | 68 | 454 | 2.78e-15 | 77.4 |
| Msa0343210 | MtrunA17_Chr5g0442721 | 24.462 | 372 | 220 | 19 | 51 | 370 | 55 | 417 | 2.92e-15 | 77.4 |
| Msa0343210 | MtrunA17_Chr7g0219291 | 23.831 | 449 | 256 | 22 | 18 | 396 | 367 | 799 | 3.31e-15 | 77.8 |
| Msa0343210 | MtrunA17_Chr3g0125001 | 25.967 | 362 | 223 | 14 | 61 | 387 | 55 | 406 | 4.29e-14 | 73.6 |
| Msa0343210 | MtrunA17_Chr5g0438711 | 50.877 | 57 | 28 | 0 | 355 | 411 | 1 | 57 | 5.25e-14 | 67.0 |
| Msa0343210 | MtrunA17_Chr7g0270681 | 43.210 | 81 | 45 | 1 | 44 | 124 | 6 | 85 | 1.93e-13 | 65.9 |
| Msa0343210 | MtrunA17_Chr6g0470591 | 24.444 | 405 | 237 | 19 | 62 | 411 | 72 | 462 | 1.22e-12 | 69.3 |
| Msa0343210 | MtrunA17_Chr7g0252731 | 23.380 | 355 | 212 | 13 | 43 | 365 | 52 | 378 | 1.55e-12 | 68.9 |
| Msa0343210 | MtrunA17_Chr7g0270771 | 29.508 | 183 | 108 | 8 | 1 | 172 | 1 | 173 | 1.10e-11 | 65.1 |
| Msa0343210 | MtrunA17_Chr4g0004691 | 29.444 | 180 | 100 | 7 | 7 | 172 | 6 | 172 | 1.81e-11 | 62.8 |
| Msa0343210 | MtrunA17_Chr1g0148851 | 25.543 | 184 | 124 | 6 | 7 | 181 | 8 | 187 | 2.89e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343210 | AT1G24430.1 | 44.496 | 427 | 223 | 9 | 1 | 415 | 1 | 425 | 2.97e-125 | 369 |
| Msa0343210 | AT3G26040.1 | 37.705 | 427 | 246 | 10 | 3 | 411 | 1 | 425 | 1.48e-95 | 294 |
| Msa0343210 | AT4G15390.1 | 35.747 | 442 | 245 | 13 | 1 | 412 | 4 | 436 | 1.29e-77 | 248 |
| Msa0343210 | AT4G15390.2 | 35.747 | 442 | 245 | 13 | 1 | 412 | 4 | 436 | 1.29e-77 | 248 |
| Msa0343210 | AT3G30280.1 | 34.642 | 433 | 257 | 10 | 3 | 412 | 4 | 433 | 1.41e-77 | 247 |
| Msa0343210 | AT5G47950.1 | 36.407 | 423 | 246 | 12 | 3 | 412 | 4 | 416 | 5.22e-74 | 238 |
| Msa0343210 | AT1G24420.2 | 37.701 | 435 | 237 | 14 | 1 | 411 | 1 | 425 | 9.09e-71 | 229 |
| Msa0343210 | AT1G24420.1 | 37.701 | 435 | 237 | 14 | 1 | 411 | 1 | 425 | 9.09e-71 | 229 |
| Msa0343210 | AT5G23970.1 | 31.059 | 425 | 269 | 13 | 3 | 411 | 1 | 417 | 1.62e-55 | 189 |
| Msa0343210 | AT5G47980.1 | 31.519 | 441 | 265 | 18 | 1 | 412 | 1 | 433 | 1.51e-50 | 177 |
| Msa0343210 | AT4G15400.1 | 31.364 | 440 | 259 | 18 | 1 | 412 | 1 | 425 | 6.90e-44 | 159 |
| Msa0343210 | AT5G41040.2 | 27.990 | 418 | 246 | 16 | 1 | 382 | 13 | 411 | 1.12e-35 | 136 |
| Msa0343210 | AT5G41040.1 | 27.990 | 418 | 246 | 16 | 1 | 382 | 29 | 427 | 1.58e-35 | 136 |
| Msa0343210 | AT5G48930.1 | 26.018 | 442 | 273 | 18 | 3 | 405 | 1 | 427 | 3.46e-32 | 127 |
| Msa0343210 | AT3G48720.1 | 25.342 | 438 | 278 | 16 | 7 | 410 | 8 | 430 | 1.64e-28 | 116 |
| Msa0343210 | AT5G63560.1 | 25.858 | 437 | 273 | 19 | 7 | 410 | 8 | 426 | 1.04e-27 | 114 |
| Msa0343210 | AT2G19070.1 | 25.624 | 441 | 272 | 15 | 13 | 405 | 12 | 444 | 4.01e-25 | 107 |
| Msa0343210 | AT3G50280.1 | 25.323 | 387 | 247 | 15 | 61 | 411 | 59 | 439 | 8.92e-25 | 105 |
| Msa0343210 | AT1G28680.1 | 24.812 | 399 | 252 | 15 | 5 | 368 | 4 | 389 | 1.43e-24 | 105 |
| Msa0343210 | AT5G67150.1 | 26.582 | 474 | 259 | 22 | 1 | 414 | 1 | 445 | 1.65e-24 | 105 |
| Msa0343210 | AT5G17540.1 | 24.490 | 441 | 273 | 19 | 11 | 409 | 15 | 437 | 3.82e-24 | 104 |
| Msa0343210 | AT1G03390.1 | 24.337 | 415 | 251 | 16 | 1 | 369 | 13 | 410 | 1.45e-23 | 102 |
| Msa0343210 | AT1G27620.1 | 25.463 | 432 | 259 | 18 | 12 | 405 | 16 | 422 | 1.87e-23 | 102 |
| Msa0343210 | AT1G28680.2 | 26.710 | 307 | 190 | 12 | 5 | 280 | 4 | 306 | 7.87e-23 | 99.8 |
| Msa0343210 | AT3G50270.1 | 26.477 | 457 | 276 | 18 | 5 | 415 | 6 | 448 | 1.69e-22 | 99.4 |
| Msa0343210 | AT1G31490.1 | 25.122 | 410 | 235 | 17 | 1 | 365 | 1 | 383 | 1.20e-20 | 94.0 |
| Msa0343210 | AT5G07850.1 | 25.745 | 470 | 268 | 21 | 4 | 415 | 7 | 453 | 1.63e-20 | 93.6 |
| Msa0343210 | AT4G31910.1 | 24.706 | 425 | 249 | 17 | 1 | 372 | 5 | 411 | 3.53e-19 | 89.7 |
| Msa0343210 | AT5G16410.1 | 25.062 | 403 | 244 | 16 | 5 | 367 | 36 | 420 | 5.29e-19 | 89.4 |
| Msa0343210 | AT5G39090.1 | 26.456 | 412 | 231 | 19 | 43 | 401 | 44 | 436 | 6.52e-19 | 89.0 |
| Msa0343210 | AT3G50280.2 | 26.897 | 290 | 186 | 11 | 143 | 411 | 25 | 309 | 7.28e-19 | 87.0 |
| Msa0343210 | AT1G65450.1 | 24.053 | 449 | 289 | 17 | 3 | 413 | 16 | 450 | 1.03e-18 | 88.2 |
| Msa0343210 | AT5G07080.1 | 24.605 | 443 | 264 | 25 | 12 | 405 | 21 | 442 | 3.48e-18 | 86.7 |
| Msa0343210 | AT3G03480.1 | 24.236 | 458 | 286 | 19 | 1 | 416 | 15 | 453 | 3.55e-18 | 86.7 |
| Msa0343210 | AT2G23510.1 | 22.707 | 458 | 287 | 18 | 3 | 411 | 11 | 450 | 4.83e-18 | 86.3 |
| Msa0343210 | AT5G38130.1 | 22.921 | 445 | 268 | 19 | 3 | 396 | 22 | 442 | 6.09e-18 | 85.9 |
| Msa0343210 | AT3G29670.1 | 24.379 | 443 | 247 | 23 | 21 | 401 | 22 | 438 | 6.90e-18 | 85.9 |
| Msa0343210 | AT2G39980.1 | 23.641 | 423 | 243 | 18 | 61 | 411 | 62 | 476 | 1.04e-17 | 85.5 |
| Msa0343210 | AT5G07860.1 | 24.619 | 459 | 281 | 20 | 4 | 414 | 7 | 448 | 8.02e-17 | 82.4 |
| Msa0343210 | AT1G32910.1 | 25.414 | 362 | 212 | 15 | 56 | 370 | 60 | 410 | 1.96e-16 | 81.3 |
| Msa0343210 | AT1G78990.1 | 25.389 | 386 | 210 | 18 | 55 | 386 | 61 | 422 | 4.58e-16 | 80.1 |
| Msa0343210 | AT5G42830.1 | 25.980 | 408 | 237 | 19 | 56 | 415 | 59 | 449 | 7.40e-16 | 79.7 |
| Msa0343210 | AT2G40230.1 | 24.755 | 408 | 244 | 16 | 5 | 370 | 5 | 391 | 1.11e-15 | 79.0 |
| Msa0343210 | AT5G07870.1 | 25.054 | 463 | 288 | 22 | 4 | 415 | 7 | 461 | 3.19e-15 | 77.8 |
| Msa0343210 | AT4G29250.1 | 27.670 | 206 | 122 | 8 | 7 | 193 | 17 | 214 | 5.57e-14 | 73.9 |
Find 82 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGGTTGGGGCAAACCTATT+TGG | 0.239996 | 3_1:+1219817 | Msa0343210:CDS |
| TCTTTGGTGATACCACTTCT+AGG | 0.244639 | 3_1:-1219327 | None:intergenic |
| TTTGCAAACTATATTATCTT+TGG | 0.262916 | 3_1:-1219343 | None:intergenic |
| TAGCTTGAAGCTTGAGGATA+TGG | 0.275716 | 3_1:+1219920 | Msa0343210:CDS |
| CGGTTGGGGCAAACCTATTT+GGG | 0.293598 | 3_1:+1219818 | Msa0343210:CDS |
| AATGAGTTAAGATGTTTGAT+AGG | 0.297849 | 3_1:-1218930 | None:intergenic |
| ATCAGACGGTTGAGTTCATT+TGG | 0.298573 | 3_1:-1219075 | None:intergenic |
| GTGATTCTTGTTTCTATGTA+AGG | 0.301257 | 3_1:-1219015 | None:intergenic |
| TACACGCGTTGAGGCTTTAT+CGG | 0.308570 | 3_1:+1219428 | Msa0343210:CDS |
| ATATCACAAACATCACTTTC+GGG | 0.321077 | 3_1:+1219115 | Msa0343210:CDS |
| AGAGCATTTGGAATTTCTTA+AGG | 0.327158 | 3_1:+1219707 | Msa0343210:CDS |
| GCAGGTGAACCAACCCAAAT+AGG | 0.347731 | 3_1:-1219831 | None:intergenic |
| TCAAGAAGGTAAAGAGCATT+TGG | 0.349750 | 3_1:+1219695 | Msa0343210:CDS |
| TGTAAACCATAGGCGCGATT+TGG | 0.365447 | 3_1:-1218834 | None:intergenic |
| CCTTTGTATGATGCTGATTT+CGG | 0.369977 | 3_1:+1219798 | Msa0343210:CDS |
| GATATCACAAACATCACTTT+CGG | 0.382017 | 3_1:+1219114 | Msa0343210:CDS |
| GTGTTTGTTGATTGTAGGGA+TGG | 0.395747 | 3_1:+1219876 | Msa0343210:CDS |
| AGAAGGTTTGATGATTTCTC+TGG | 0.399863 | 3_1:-1218764 | None:intergenic |
| TGGGATGGAGTTGGAGAAGA+AGG | 0.403318 | 3_1:-1218781 | None:intergenic |
| TTTCAATTTCCTCAATAGTT+GGG | 0.405242 | 3_1:+1219218 | Msa0343210:CDS |
| CAAAGGAAACCTACACAAAC+TGG | 0.408223 | 3_1:-1219781 | None:intergenic |
| GTGATATCGTCAAGTTGAAA+TGG | 0.414665 | 3_1:-1219099 | None:intergenic |
| TGTTTGTTGATTGTAGGGAT+GGG | 0.414709 | 3_1:+1219877 | Msa0343210:CDS |
| GTATGATGCTGATTTCGGTT+GGG | 0.417116 | 3_1:+1219803 | Msa0343210:CDS |
| AGAGTTGGTAATGGCGAAGA+TGG | 0.417671 | 3_1:-1218801 | None:intergenic |
| TCTTCTCCGCCATTCATCTT+CGG | 0.417856 | 3_1:-1219603 | None:intergenic |
| TGGTTGTGTTTGTTGATTGT+AGG | 0.429668 | 3_1:+1219871 | Msa0343210:CDS |
| TGATAGAGTGGTTGTGAAGG+AGG | 0.431846 | 3_1:+1219737 | Msa0343210:CDS |
| TCTCGACCAAATCGCGCCTA+TGG | 0.434538 | 3_1:+1218828 | Msa0343210:CDS |
| AGTGGTTGTGAAGGAGGAAT+TGG | 0.435135 | 3_1:+1219743 | Msa0343210:CDS |
| TGATTCTTGTTTCTATGTAA+GGG | 0.435205 | 3_1:-1219014 | None:intergenic |
| TTTGTTGATTGTAGGGATGG+GGG | 0.443794 | 3_1:+1219879 | Msa0343210:CDS |
| TGAGAGTAGAAGAGGACGAT+AGG | 0.446451 | 3_1:-1218859 | None:intergenic |
| GGTTGTGTTTGTTGATTGTA+GGG | 0.448709 | 3_1:+1219872 | Msa0343210:CDS |
| GGTTAAGTTTGAAGCTGACT+TGG | 0.451046 | 3_1:+1219941 | Msa0343210:CDS |
| GTTTGTTGATTGTAGGGATG+GGG | 0.456514 | 3_1:+1219878 | Msa0343210:CDS |
| GAGAGTAGAAGAGGACGATA+GGG | 0.457167 | 3_1:-1218858 | None:intergenic |
| GATGGTGTACAAAGAAACTA+TGG | 0.458576 | 3_1:+1219489 | Msa0343210:CDS |
| TATGATGCTGATTTCGGTTG+GGG | 0.459618 | 3_1:+1219804 | Msa0343210:CDS |
| TCAGACGGTTGAGTTCATTT+GGG | 0.460103 | 3_1:-1219074 | None:intergenic |
| TGTATGATGCTGATTTCGGT+TGG | 0.463212 | 3_1:+1219802 | Msa0343210:CDS |
| CGGTTGAGTTCATTTGGGAT+TGG | 0.465481 | 3_1:-1219069 | None:intergenic |
| TAATATTTGCCCAACTATTG+AGG | 0.469088 | 3_1:-1219227 | None:intergenic |
| ATGGCGGAGAAGAGTGTTAC+GGG | 0.469371 | 3_1:+1219613 | Msa0343210:CDS |
| CCGTTACCTTCAGAATCGTT+TGG | 0.473811 | 3_1:+1219552 | Msa0343210:CDS |
| TGGCGAAGATGGGATGGAGT+TGG | 0.486513 | 3_1:-1218790 | None:intergenic |
| GTTGATGTGATTTATAATGA+TGG | 0.500712 | 3_1:+1219471 | Msa0343210:CDS |
| ATGAGTTAAGATGTTTGATA+GGG | 0.504237 | 3_1:-1218929 | None:intergenic |
| CTTTGGTGATACCACTTCTA+GGG | 0.506327 | 3_1:-1219326 | None:intergenic |
| GAGTTGGTAATGGCGAAGAT+GGG | 0.516769 | 3_1:-1218800 | None:intergenic |
| AGTTGTGGTGGAATTGCAAT+CGG | 0.519199 | 3_1:+1219156 | Msa0343210:CDS |
| CTTAACTCATTTCTACCCTC+TGG | 0.520047 | 3_1:+1218942 | Msa0343210:CDS |
| TTTAAGGATGAAGTTAGAAG+TGG | 0.522198 | 3_1:+1218732 | None:intergenic |
| TGATAAAGAATATGTGAAGA+AGG | 0.523806 | 3_1:+1219671 | Msa0343210:CDS |
| AGGCGCGATTTGGTCGAGAA+AGG | 0.526715 | 3_1:-1218824 | None:intergenic |
| TGGTAATGGCGAAGATGGGA+TGG | 0.531916 | 3_1:-1218796 | None:intergenic |
| AATGGCGGAGAAGAGTGTTA+CGG | 0.532814 | 3_1:+1219612 | Msa0343210:CDS |
| TGGGGCAAACCTATTTGGGT+TGG | 0.539180 | 3_1:+1219822 | Msa0343210:CDS |
| ATAACGATTCCGAAGATGAA+TGG | 0.550500 | 3_1:+1219594 | Msa0343210:CDS |
| CTATGTTAGCTTGAAGCTTG+AGG | 0.553692 | 3_1:+1219914 | Msa0343210:CDS |
| GATAAAGCCTCAACGCGTGT+AGG | 0.559157 | 3_1:-1219426 | None:intergenic |
| ACTCATTTCTACCCTCTGGC+AGG | 0.560780 | 3_1:+1218946 | Msa0343210:CDS |
| TGTCGTTGTGAGAGTAGAAG+AGG | 0.565498 | 3_1:-1218867 | None:intergenic |
| CTTTCGCATCAAATAGCCGA+TGG | 0.567567 | 3_1:+1219186 | Msa0343210:CDS |
| CGAGAAAGGAGAGTTGGTAA+TGG | 0.579288 | 3_1:-1218810 | None:intergenic |
| TTTGGTCGAGAAAGGAGAGT+TGG | 0.580416 | 3_1:-1218816 | None:intergenic |
| TTGTTCAATCGTCCTGCCAG+AGG | 0.580942 | 3_1:-1218958 | None:intergenic |
| TCGGGATTTGACCCTAGAAG+TGG | 0.584089 | 3_1:+1219315 | Msa0343210:CDS |
| CTCAAGCTTCAAGCTAACAT+AGG | 0.596679 | 3_1:-1219913 | None:intergenic |
| TGTTCAATCGTCCTGCCAGA+GGG | 0.601599 | 3_1:-1218957 | None:intergenic |
| TATGTGAAGAAGGTTCAAGA+AGG | 0.607198 | 3_1:+1219681 | Msa0343210:CDS |
| AAATTCTTAAAAGTCAAAGC+AGG | 0.611194 | 3_1:-1219849 | None:intergenic |
| ACGATAGGGTTGTAAACCAT+AGG | 0.626993 | 3_1:-1218844 | None:intergenic |
| TTCATACACTGCAATGACGA+AGG | 0.630637 | 3_1:+1218988 | Msa0343210:CDS |
| CCGAAATCAGCATCATACAA+AGG | 0.631934 | 3_1:-1219798 | None:intergenic |
| TAGTTACCAAACGATTCTGA+AGG | 0.638125 | 3_1:-1219558 | None:intergenic |
| CAAGTTGAAATGGAATCAGA+CGG | 0.638265 | 3_1:-1219089 | None:intergenic |
| CCAAACGATTCTGAAGGTAA+CGG | 0.670157 | 3_1:-1219552 | None:intergenic |
| AAACTATGGTGTGGTTCATG+CGG | 0.688152 | 3_1:+1219503 | Msa0343210:CDS |
| ACGATTCCGAAGATGAATGG+CGG | 0.711525 | 3_1:+1219597 | Msa0343210:CDS |
| AACGATTCTGAAGGTAACGG+TGG | 0.714521 | 3_1:-1219549 | None:intergenic |
| TGTACAAAGAAACTATGGTG+TGG | 0.772212 | 3_1:+1219494 | Msa0343210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAAAAATGATAAACCAT+CGG | - | chr3_1:1219205-1219224 | None:intergenic | 20.0% |
| !! | TTTGCAAACTATATTATCTT+TGG | - | chr3_1:1219346-1219365 | None:intergenic | 20.0% |
| !! | ATTGAAAAATGATAAACCAT+CGG | - | chr3_1:1219205-1219224 | None:intergenic | 20.0% |
| !! | TTTGCAAACTATATTATCTT+TGG | - | chr3_1:1219346-1219365 | None:intergenic | 20.0% |
| !!! | ATTTTTTAGAGTGTTGGATA+TGG | - | chr3_1:1218908-1218927 | None:intergenic | 25.0% |
| ! | ATGAGTTAAGATGTTTGATA+GGG | - | chr3_1:1218932-1218951 | None:intergenic | 25.0% |
| ! | AATGAGTTAAGATGTTTGAT+AGG | - | chr3_1:1218933-1218952 | None:intergenic | 25.0% |
| !!! | TGATTCTTGTTTCTATGTAA+GGG | - | chr3_1:1219017-1219036 | None:intergenic | 25.0% |
| !!! | CAACTCAATTTTTTTAGTTG+TGG | + | chr3_1:1219141-1219160 | Msa0343210:CDS | 25.0% |
| !! | TTTTCAATTTCCTCAATAGT+TGG | + | chr3_1:1219217-1219236 | Msa0343210:CDS | 25.0% |
| ! | TTTCAATTTCCTCAATAGTT+GGG | + | chr3_1:1219218-1219237 | Msa0343210:CDS | 25.0% |
| !! | GAAGAATCAAAAATAGGTTT+TGG | - | chr3_1:1219270-1219289 | None:intergenic | 25.0% |
| ! | AGCTTAGAAGAATCAAAAAT+AGG | - | chr3_1:1219276-1219295 | None:intergenic | 25.0% |
| !! | TCAAATCCCGAAATATTTTT+GGG | - | chr3_1:1219306-1219325 | None:intergenic | 25.0% |
| ! | GTTGATGTGATTTATAATGA+TGG | + | chr3_1:1219471-1219490 | Msa0343210:CDS | 25.0% |
| ! | TGATAAAGAATATGTGAAGA+AGG | + | chr3_1:1219671-1219690 | Msa0343210:CDS | 25.0% |
| !! | TTAATTTTACCAGTTTGTGT+AGG | + | chr3_1:1219772-1219791 | Msa0343210:CDS | 25.0% |
| ! | AAATTCTTAAAAGTCAAAGC+AGG | - | chr3_1:1219852-1219871 | None:intergenic | 25.0% |
| !!! | TGCTTTGACTTTTAAGAATT+TGG | + | chr3_1:1219851-1219870 | Msa0343210:CDS | 25.0% |
| !!! | ATTTTTTAGAGTGTTGGATA+TGG | - | chr3_1:1218908-1218927 | None:intergenic | 25.0% |
| ! | ATGAGTTAAGATGTTTGATA+GGG | - | chr3_1:1218932-1218951 | None:intergenic | 25.0% |
| ! | AATGAGTTAAGATGTTTGAT+AGG | - | chr3_1:1218933-1218952 | None:intergenic | 25.0% |
| !!! | TGATTCTTGTTTCTATGTAA+GGG | - | chr3_1:1219017-1219036 | None:intergenic | 25.0% |
| !!! | CAACTCAATTTTTTTAGTTG+TGG | + | chr3_1:1219141-1219160 | Msa0343210:CDS | 25.0% |
| !! | TTTTCAATTTCCTCAATAGT+TGG | + | chr3_1:1219217-1219236 | Msa0343210:CDS | 25.0% |
| ! | TTTCAATTTCCTCAATAGTT+GGG | + | chr3_1:1219218-1219237 | Msa0343210:CDS | 25.0% |
| !! | GAAGAATCAAAAATAGGTTT+TGG | - | chr3_1:1219270-1219289 | None:intergenic | 25.0% |
| ! | AGCTTAGAAGAATCAAAAAT+AGG | - | chr3_1:1219276-1219295 | None:intergenic | 25.0% |
| !! | TCAAATCCCGAAATATTTTT+GGG | - | chr3_1:1219306-1219325 | None:intergenic | 25.0% |
| ! | GTTGATGTGATTTATAATGA+TGG | + | chr3_1:1219471-1219490 | Msa0343210:CDS | 25.0% |
| ! | TGATAAAGAATATGTGAAGA+AGG | + | chr3_1:1219671-1219690 | Msa0343210:CDS | 25.0% |
| !! | TTAATTTTACCAGTTTGTGT+AGG | + | chr3_1:1219772-1219791 | Msa0343210:CDS | 25.0% |
| ! | AAATTCTTAAAAGTCAAAGC+AGG | - | chr3_1:1219852-1219871 | None:intergenic | 25.0% |
| !!! | TGCTTTGACTTTTAAGAATT+TGG | + | chr3_1:1219851-1219870 | Msa0343210:CDS | 25.0% |
| !!! | TAGGGAATTTTTTAGAGTGT+TGG | - | chr3_1:1218914-1218933 | None:intergenic | 30.0% |
| !! | GTGATTCTTGTTTCTATGTA+AGG | - | chr3_1:1219018-1219037 | None:intergenic | 30.0% |
| GATATCACAAACATCACTTT+CGG | + | chr3_1:1219114-1219133 | Msa0343210:CDS | 30.0% | |
| ATATCACAAACATCACTTTC+GGG | + | chr3_1:1219115-1219134 | Msa0343210:CDS | 30.0% | |
| !!! | CTCAATTTTTTTAGTTGTGG+TGG | + | chr3_1:1219144-1219163 | Msa0343210:CDS | 30.0% |
| TAATATTTGCCCAACTATTG+AGG | - | chr3_1:1219230-1219249 | None:intergenic | 30.0% | |
| ! | GTCAAATCCCGAAATATTTT+TGG | - | chr3_1:1219307-1219326 | None:intergenic | 30.0% |
| !!! | TTTTGTTTTTAATGCTGACG+TGG | + | chr3_1:1219368-1219387 | Msa0343210:CDS | 30.0% |
| ! | AGAGCATTTGGAATTTCTTA+AGG | + | chr3_1:1219707-1219726 | Msa0343210:CDS | 30.0% |
| !! | TAAGGAAAGTTTTGATAGAG+TGG | + | chr3_1:1219725-1219744 | Msa0343210:CDS | 30.0% |
| !!! | TAGGGAATTTTTTAGAGTGT+TGG | - | chr3_1:1218914-1218933 | None:intergenic | 30.0% |
| !! | GTGATTCTTGTTTCTATGTA+AGG | - | chr3_1:1219018-1219037 | None:intergenic | 30.0% |
| GATATCACAAACATCACTTT+CGG | + | chr3_1:1219114-1219133 | Msa0343210:CDS | 30.0% | |
| ATATCACAAACATCACTTTC+GGG | + | chr3_1:1219115-1219134 | Msa0343210:CDS | 30.0% | |
| !!! | CTCAATTTTTTTAGTTGTGG+TGG | + | chr3_1:1219144-1219163 | Msa0343210:CDS | 30.0% |
| TAATATTTGCCCAACTATTG+AGG | - | chr3_1:1219230-1219249 | None:intergenic | 30.0% | |
| ! | GTCAAATCCCGAAATATTTT+TGG | - | chr3_1:1219307-1219326 | None:intergenic | 30.0% |
| !!! | TTTTGTTTTTAATGCTGACG+TGG | + | chr3_1:1219368-1219387 | Msa0343210:CDS | 30.0% |
| ! | AGAGCATTTGGAATTTCTTA+AGG | + | chr3_1:1219707-1219726 | Msa0343210:CDS | 30.0% |
| !! | TAAGGAAAGTTTTGATAGAG+TGG | + | chr3_1:1219725-1219744 | Msa0343210:CDS | 30.0% |
| ! | AGAAGGTTTGATGATTTCTC+TGG | - | chr3_1:1218767-1218786 | None:intergenic | 35.0% |
| ! | CAAGTTGAAATGGAATCAGA+CGG | - | chr3_1:1219092-1219111 | None:intergenic | 35.0% |
| !! | GTGATATCGTCAAGTTGAAA+TGG | - | chr3_1:1219102-1219121 | None:intergenic | 35.0% |
| TTTCCCGCCCAAAAATATTT+CGG | + | chr3_1:1219296-1219315 | Msa0343210:CDS | 35.0% | |
| !!! | AATCCCGAAATATTTTTGGG+CGG | - | chr3_1:1219303-1219322 | None:intergenic | 35.0% |
| !!! | AGGCTTTATCGGCTTTTATA+TGG | + | chr3_1:1219439-1219458 | Msa0343210:CDS | 35.0% |
| GATGGTGTACAAAGAAACTA+TGG | + | chr3_1:1219489-1219508 | Msa0343210:CDS | 35.0% | |
| TGTACAAAGAAACTATGGTG+TGG | + | chr3_1:1219494-1219513 | Msa0343210:CDS | 35.0% | |
| TAGTTACCAAACGATTCTGA+AGG | - | chr3_1:1219561-1219580 | None:intergenic | 35.0% | |
| ATAACGATTCCGAAGATGAA+TGG | + | chr3_1:1219594-1219613 | Msa0343210:CDS | 35.0% | |
| TATGTGAAGAAGGTTCAAGA+AGG | + | chr3_1:1219681-1219700 | Msa0343210:CDS | 35.0% | |
| !! | TCAAGAAGGTAAAGAGCATT+TGG | + | chr3_1:1219695-1219714 | Msa0343210:CDS | 35.0% |
| ! | TTTTGATAGAGTGGTTGTGA+AGG | + | chr3_1:1219734-1219753 | Msa0343210:CDS | 35.0% |
| !! | CCTTTGTATGATGCTGATTT+CGG | + | chr3_1:1219798-1219817 | Msa0343210:CDS | 35.0% |
| ! | TGGTTGTGTTTGTTGATTGT+AGG | + | chr3_1:1219871-1219890 | Msa0343210:CDS | 35.0% |
| ! | GGTTGTGTTTGTTGATTGTA+GGG | + | chr3_1:1219872-1219891 | Msa0343210:CDS | 35.0% |
| ! | TGTTTGTTGATTGTAGGGAT+GGG | + | chr3_1:1219877-1219896 | Msa0343210:CDS | 35.0% |
| ! | AGAAGGTTTGATGATTTCTC+TGG | - | chr3_1:1218767-1218786 | None:intergenic | 35.0% |
| ! | CAAGTTGAAATGGAATCAGA+CGG | - | chr3_1:1219092-1219111 | None:intergenic | 35.0% |
| !! | GTGATATCGTCAAGTTGAAA+TGG | - | chr3_1:1219102-1219121 | None:intergenic | 35.0% |
| TTTCCCGCCCAAAAATATTT+CGG | + | chr3_1:1219296-1219315 | Msa0343210:CDS | 35.0% | |
| !!! | AATCCCGAAATATTTTTGGG+CGG | - | chr3_1:1219303-1219322 | None:intergenic | 35.0% |
| !!! | AGGCTTTATCGGCTTTTATA+TGG | + | chr3_1:1219439-1219458 | Msa0343210:CDS | 35.0% |
| GATGGTGTACAAAGAAACTA+TGG | + | chr3_1:1219489-1219508 | Msa0343210:CDS | 35.0% | |
| TGTACAAAGAAACTATGGTG+TGG | + | chr3_1:1219494-1219513 | Msa0343210:CDS | 35.0% | |
| TAGTTACCAAACGATTCTGA+AGG | - | chr3_1:1219561-1219580 | None:intergenic | 35.0% | |
| ATAACGATTCCGAAGATGAA+TGG | + | chr3_1:1219594-1219613 | Msa0343210:CDS | 35.0% | |
| TATGTGAAGAAGGTTCAAGA+AGG | + | chr3_1:1219681-1219700 | Msa0343210:CDS | 35.0% | |
| !! | TCAAGAAGGTAAAGAGCATT+TGG | + | chr3_1:1219695-1219714 | Msa0343210:CDS | 35.0% |
| ! | TTTTGATAGAGTGGTTGTGA+AGG | + | chr3_1:1219734-1219753 | Msa0343210:CDS | 35.0% |
| !! | CCTTTGTATGATGCTGATTT+CGG | + | chr3_1:1219798-1219817 | Msa0343210:CDS | 35.0% |
| ! | TGGTTGTGTTTGTTGATTGT+AGG | + | chr3_1:1219871-1219890 | Msa0343210:CDS | 35.0% |
| ! | GGTTGTGTTTGTTGATTGTA+GGG | + | chr3_1:1219872-1219891 | Msa0343210:CDS | 35.0% |
| ! | TGTTTGTTGATTGTAGGGAT+GGG | + | chr3_1:1219877-1219896 | Msa0343210:CDS | 35.0% |
| ACGATAGGGTTGTAAACCAT+AGG | - | chr3_1:1218847-1218866 | None:intergenic | 40.0% | |
| CTTAACTCATTTCTACCCTC+TGG | + | chr3_1:1218942-1218961 | Msa0343210:CDS | 40.0% | |
| TTCATACACTGCAATGACGA+AGG | + | chr3_1:1218988-1219007 | Msa0343210:CDS | 40.0% | |
| TCAGACGGTTGAGTTCATTT+GGG | - | chr3_1:1219077-1219096 | None:intergenic | 40.0% | |
| ATCAGACGGTTGAGTTCATT+TGG | - | chr3_1:1219078-1219097 | None:intergenic | 40.0% | |
| ! | AGTTGTGGTGGAATTGCAAT+CGG | + | chr3_1:1219156-1219175 | Msa0343210:CDS | 40.0% |
| TTCCCGCCCAAAAATATTTC+GGG | + | chr3_1:1219297-1219316 | Msa0343210:CDS | 40.0% | |
| !!! | ATCCCGAAATATTTTTGGGC+GGG | - | chr3_1:1219302-1219321 | None:intergenic | 40.0% |
| ! | CTTTGGTGATACCACTTCTA+GGG | - | chr3_1:1219329-1219348 | None:intergenic | 40.0% |
| ! | TCTTTGGTGATACCACTTCT+AGG | - | chr3_1:1219330-1219349 | None:intergenic | 40.0% |
| ! | TTTTAATCCTACACGCGTTG+AGG | + | chr3_1:1219419-1219438 | Msa0343210:CDS | 40.0% |
| AAACTATGGTGTGGTTCATG+CGG | + | chr3_1:1219503-1219522 | Msa0343210:CDS | 40.0% | |
| GGTGAATTTGCGCCAAAAAA+TGG | + | chr3_1:1219524-1219543 | Msa0343210:CDS | 40.0% | |
| !!! | GTAACGGTGGTTCCATTTTT+TGG | - | chr3_1:1219539-1219558 | None:intergenic | 40.0% |
| ! | CCAAACGATTCTGAAGGTAA+CGG | - | chr3_1:1219555-1219574 | None:intergenic | 40.0% |
| CAAAGGAAACCTACACAAAC+TGG | - | chr3_1:1219784-1219803 | None:intergenic | 40.0% | |
| CCGAAATCAGCATCATACAA+AGG | - | chr3_1:1219801-1219820 | None:intergenic | 40.0% | |
| !! | TGTATGATGCTGATTTCGGT+TGG | + | chr3_1:1219802-1219821 | Msa0343210:CDS | 40.0% |
| !! | GTATGATGCTGATTTCGGTT+GGG | + | chr3_1:1219803-1219822 | Msa0343210:CDS | 40.0% |
| !! | TATGATGCTGATTTCGGTTG+GGG | + | chr3_1:1219804-1219823 | Msa0343210:CDS | 40.0% |
| ! | GTGTTTGTTGATTGTAGGGA+TGG | + | chr3_1:1219876-1219895 | Msa0343210:CDS | 40.0% |
| ! | GTTTGTTGATTGTAGGGATG+GGG | + | chr3_1:1219878-1219897 | Msa0343210:CDS | 40.0% |
| ! | TTTGTTGATTGTAGGGATGG+GGG | + | chr3_1:1219879-1219898 | Msa0343210:CDS | 40.0% |
| CTCAAGCTTCAAGCTAACAT+AGG | - | chr3_1:1219916-1219935 | None:intergenic | 40.0% | |
| ! | CTATGTTAGCTTGAAGCTTG+AGG | + | chr3_1:1219914-1219933 | Msa0343210:CDS | 40.0% |
| TAGCTTGAAGCTTGAGGATA+TGG | + | chr3_1:1219920-1219939 | Msa0343210:CDS | 40.0% | |
| ! | GGTTAAGTTTGAAGCTGACT+TGG | + | chr3_1:1219941-1219960 | Msa0343210:CDS | 40.0% |
| ACGATAGGGTTGTAAACCAT+AGG | - | chr3_1:1218847-1218866 | None:intergenic | 40.0% | |
| CTTAACTCATTTCTACCCTC+TGG | + | chr3_1:1218942-1218961 | Msa0343210:CDS | 40.0% | |
| TTCATACACTGCAATGACGA+AGG | + | chr3_1:1218988-1219007 | Msa0343210:CDS | 40.0% | |
| TCAGACGGTTGAGTTCATTT+GGG | - | chr3_1:1219077-1219096 | None:intergenic | 40.0% | |
| ATCAGACGGTTGAGTTCATT+TGG | - | chr3_1:1219078-1219097 | None:intergenic | 40.0% | |
| ! | AGTTGTGGTGGAATTGCAAT+CGG | + | chr3_1:1219156-1219175 | Msa0343210:CDS | 40.0% |
| TTCCCGCCCAAAAATATTTC+GGG | + | chr3_1:1219297-1219316 | Msa0343210:CDS | 40.0% | |
| !!! | ATCCCGAAATATTTTTGGGC+GGG | - | chr3_1:1219302-1219321 | None:intergenic | 40.0% |
| ! | CTTTGGTGATACCACTTCTA+GGG | - | chr3_1:1219329-1219348 | None:intergenic | 40.0% |
| ! | TCTTTGGTGATACCACTTCT+AGG | - | chr3_1:1219330-1219349 | None:intergenic | 40.0% |
| ! | TTTTAATCCTACACGCGTTG+AGG | + | chr3_1:1219419-1219438 | Msa0343210:CDS | 40.0% |
| AAACTATGGTGTGGTTCATG+CGG | + | chr3_1:1219503-1219522 | Msa0343210:CDS | 40.0% | |
| GGTGAATTTGCGCCAAAAAA+TGG | + | chr3_1:1219524-1219543 | Msa0343210:CDS | 40.0% | |
| !!! | GTAACGGTGGTTCCATTTTT+TGG | - | chr3_1:1219539-1219558 | None:intergenic | 40.0% |
| ! | CCAAACGATTCTGAAGGTAA+CGG | - | chr3_1:1219555-1219574 | None:intergenic | 40.0% |
| CAAAGGAAACCTACACAAAC+TGG | - | chr3_1:1219784-1219803 | None:intergenic | 40.0% | |
| CCGAAATCAGCATCATACAA+AGG | - | chr3_1:1219801-1219820 | None:intergenic | 40.0% | |
| !! | TGTATGATGCTGATTTCGGT+TGG | + | chr3_1:1219802-1219821 | Msa0343210:CDS | 40.0% |
| !! | GTATGATGCTGATTTCGGTT+GGG | + | chr3_1:1219803-1219822 | Msa0343210:CDS | 40.0% |
| !! | TATGATGCTGATTTCGGTTG+GGG | + | chr3_1:1219804-1219823 | Msa0343210:CDS | 40.0% |
| ! | GTGTTTGTTGATTGTAGGGA+TGG | + | chr3_1:1219876-1219895 | Msa0343210:CDS | 40.0% |
| ! | GTTTGTTGATTGTAGGGATG+GGG | + | chr3_1:1219878-1219897 | Msa0343210:CDS | 40.0% |
| ! | TTTGTTGATTGTAGGGATGG+GGG | + | chr3_1:1219879-1219898 | Msa0343210:CDS | 40.0% |
| CTCAAGCTTCAAGCTAACAT+AGG | - | chr3_1:1219916-1219935 | None:intergenic | 40.0% | |
| ! | CTATGTTAGCTTGAAGCTTG+AGG | + | chr3_1:1219914-1219933 | Msa0343210:CDS | 40.0% |
| TAGCTTGAAGCTTGAGGATA+TGG | + | chr3_1:1219920-1219939 | Msa0343210:CDS | 40.0% | |
| ! | GGTTAAGTTTGAAGCTGACT+TGG | + | chr3_1:1219941-1219960 | Msa0343210:CDS | 40.0% |
| !! | GAGTTGGTAATGGCGAAGAT+GGG | - | chr3_1:1218803-1218822 | None:intergenic | 45.0% |
| !! | AGAGTTGGTAATGGCGAAGA+TGG | - | chr3_1:1218804-1218823 | None:intergenic | 45.0% |
| !! | CGAGAAAGGAGAGTTGGTAA+TGG | - | chr3_1:1218813-1218832 | None:intergenic | 45.0% |
| TTTGGTCGAGAAAGGAGAGT+TGG | - | chr3_1:1218819-1218838 | None:intergenic | 45.0% | |
| TGTAAACCATAGGCGCGATT+TGG | - | chr3_1:1218837-1218856 | None:intergenic | 45.0% | |
| GAGAGTAGAAGAGGACGATA+GGG | - | chr3_1:1218861-1218880 | None:intergenic | 45.0% | |
| TGAGAGTAGAAGAGGACGAT+AGG | - | chr3_1:1218862-1218881 | None:intergenic | 45.0% | |
| TGTCGTTGTGAGAGTAGAAG+AGG | - | chr3_1:1218870-1218889 | None:intergenic | 45.0% | |
| ! | CGGTTGAGTTCATTTGGGAT+TGG | - | chr3_1:1219072-1219091 | None:intergenic | 45.0% |
| CTTTCGCATCAAATAGCCGA+TGG | + | chr3_1:1219186-1219205 | Msa0343210:CDS | 45.0% | |
| ! | TACACGCGTTGAGGCTTTAT+CGG | + | chr3_1:1219428-1219447 | Msa0343210:CDS | 45.0% |
| ! | AACGATTCTGAAGGTAACGG+TGG | - | chr3_1:1219552-1219571 | None:intergenic | 45.0% |
| CCGTTACCTTCAGAATCGTT+TGG | + | chr3_1:1219552-1219571 | Msa0343210:CDS | 45.0% | |
| ACGATTCCGAAGATGAATGG+CGG | + | chr3_1:1219597-1219616 | Msa0343210:CDS | 45.0% | |
| TCTTCTCCGCCATTCATCTT+CGG | - | chr3_1:1219606-1219625 | None:intergenic | 45.0% | |
| !! | AATGGCGGAGAAGAGTGTTA+CGG | + | chr3_1:1219612-1219631 | Msa0343210:CDS | 45.0% |
| TGATAGAGTGGTTGTGAAGG+AGG | + | chr3_1:1219737-1219756 | Msa0343210:CDS | 45.0% | |
| AGTGGTTGTGAAGGAGGAAT+TGG | + | chr3_1:1219743-1219762 | Msa0343210:CDS | 45.0% | |
| !! | GAGTTGGTAATGGCGAAGAT+GGG | - | chr3_1:1218803-1218822 | None:intergenic | 45.0% |
| !! | AGAGTTGGTAATGGCGAAGA+TGG | - | chr3_1:1218804-1218823 | None:intergenic | 45.0% |
| !! | CGAGAAAGGAGAGTTGGTAA+TGG | - | chr3_1:1218813-1218832 | None:intergenic | 45.0% |
| TTTGGTCGAGAAAGGAGAGT+TGG | - | chr3_1:1218819-1218838 | None:intergenic | 45.0% | |
| TGTAAACCATAGGCGCGATT+TGG | - | chr3_1:1218837-1218856 | None:intergenic | 45.0% | |
| GAGAGTAGAAGAGGACGATA+GGG | - | chr3_1:1218861-1218880 | None:intergenic | 45.0% | |
| TGAGAGTAGAAGAGGACGAT+AGG | - | chr3_1:1218862-1218881 | None:intergenic | 45.0% | |
| TGTCGTTGTGAGAGTAGAAG+AGG | - | chr3_1:1218870-1218889 | None:intergenic | 45.0% | |
| ! | CGGTTGAGTTCATTTGGGAT+TGG | - | chr3_1:1219072-1219091 | None:intergenic | 45.0% |
| CTTTCGCATCAAATAGCCGA+TGG | + | chr3_1:1219186-1219205 | Msa0343210:CDS | 45.0% | |
| ! | TACACGCGTTGAGGCTTTAT+CGG | + | chr3_1:1219428-1219447 | Msa0343210:CDS | 45.0% |
| ! | AACGATTCTGAAGGTAACGG+TGG | - | chr3_1:1219552-1219571 | None:intergenic | 45.0% |
| CCGTTACCTTCAGAATCGTT+TGG | + | chr3_1:1219552-1219571 | Msa0343210:CDS | 45.0% | |
| ACGATTCCGAAGATGAATGG+CGG | + | chr3_1:1219597-1219616 | Msa0343210:CDS | 45.0% | |
| TCTTCTCCGCCATTCATCTT+CGG | - | chr3_1:1219606-1219625 | None:intergenic | 45.0% | |
| !! | AATGGCGGAGAAGAGTGTTA+CGG | + | chr3_1:1219612-1219631 | Msa0343210:CDS | 45.0% |
| TGATAGAGTGGTTGTGAAGG+AGG | + | chr3_1:1219737-1219756 | Msa0343210:CDS | 45.0% | |
| AGTGGTTGTGAAGGAGGAAT+TGG | + | chr3_1:1219743-1219762 | Msa0343210:CDS | 45.0% | |
| TGGGATGGAGTTGGAGAAGA+AGG | - | chr3_1:1218784-1218803 | None:intergenic | 50.0% | |
| !! | TGGTAATGGCGAAGATGGGA+TGG | - | chr3_1:1218799-1218818 | None:intergenic | 50.0% |
| ACTCATTTCTACCCTCTGGC+AGG | + | chr3_1:1218946-1218965 | Msa0343210:CDS | 50.0% | |
| TGTTCAATCGTCCTGCCAGA+GGG | - | chr3_1:1218960-1218979 | None:intergenic | 50.0% | |
| TTGTTCAATCGTCCTGCCAG+AGG | - | chr3_1:1218961-1218980 | None:intergenic | 50.0% | |
| TCGGGATTTGACCCTAGAAG+TGG | + | chr3_1:1219315-1219334 | Msa0343210:CDS | 50.0% | |
| GATAAAGCCTCAACGCGTGT+AGG | - | chr3_1:1219429-1219448 | None:intergenic | 50.0% | |
| !! | ATGGCGGAGAAGAGTGTTAC+GGG | + | chr3_1:1219613-1219632 | Msa0343210:CDS | 50.0% |
| TCGGTTGGGGCAAACCTATT+TGG | + | chr3_1:1219817-1219836 | Msa0343210:CDS | 50.0% | |
| CGGTTGGGGCAAACCTATTT+GGG | + | chr3_1:1219818-1219837 | Msa0343210:CDS | 50.0% | |
| TGGGGCAAACCTATTTGGGT+TGG | + | chr3_1:1219822-1219841 | Msa0343210:CDS | 50.0% | |
| GCAGGTGAACCAACCCAAAT+AGG | - | chr3_1:1219834-1219853 | None:intergenic | 50.0% | |
| TGGGATGGAGTTGGAGAAGA+AGG | - | chr3_1:1218784-1218803 | None:intergenic | 50.0% | |
| !! | TGGTAATGGCGAAGATGGGA+TGG | - | chr3_1:1218799-1218818 | None:intergenic | 50.0% |
| ACTCATTTCTACCCTCTGGC+AGG | + | chr3_1:1218946-1218965 | Msa0343210:CDS | 50.0% | |
| TGTTCAATCGTCCTGCCAGA+GGG | - | chr3_1:1218960-1218979 | None:intergenic | 50.0% | |
| TTGTTCAATCGTCCTGCCAG+AGG | - | chr3_1:1218961-1218980 | None:intergenic | 50.0% | |
| TCGGGATTTGACCCTAGAAG+TGG | + | chr3_1:1219315-1219334 | Msa0343210:CDS | 50.0% | |
| GATAAAGCCTCAACGCGTGT+AGG | - | chr3_1:1219429-1219448 | None:intergenic | 50.0% | |
| !! | ATGGCGGAGAAGAGTGTTAC+GGG | + | chr3_1:1219613-1219632 | Msa0343210:CDS | 50.0% |
| TCGGTTGGGGCAAACCTATT+TGG | + | chr3_1:1219817-1219836 | Msa0343210:CDS | 50.0% | |
| CGGTTGGGGCAAACCTATTT+GGG | + | chr3_1:1219818-1219837 | Msa0343210:CDS | 50.0% | |
| TGGGGCAAACCTATTTGGGT+TGG | + | chr3_1:1219822-1219841 | Msa0343210:CDS | 50.0% | |
| GCAGGTGAACCAACCCAAAT+AGG | - | chr3_1:1219834-1219853 | None:intergenic | 50.0% | |
| TGGCGAAGATGGGATGGAGT+TGG | - | chr3_1:1218793-1218812 | None:intergenic | 55.0% | |
| !! | AGGCGCGATTTGGTCGAGAA+AGG | - | chr3_1:1218827-1218846 | None:intergenic | 55.0% |
| TCTCGACCAAATCGCGCCTA+TGG | + | chr3_1:1218828-1218847 | Msa0343210:CDS | 55.0% | |
| GTTGATTGTAGGGATGGGGG+TGG | + | chr3_1:1219882-1219901 | Msa0343210:CDS | 55.0% | |
| TAGGGATGGGGGTGGTATTG+AGG | + | chr3_1:1219890-1219909 | Msa0343210:CDS | 55.0% | |
| TGGCGAAGATGGGATGGAGT+TGG | - | chr3_1:1218793-1218812 | None:intergenic | 55.0% | |
| !! | AGGCGCGATTTGGTCGAGAA+AGG | - | chr3_1:1218827-1218846 | None:intergenic | 55.0% |
| TCTCGACCAAATCGCGCCTA+TGG | + | chr3_1:1218828-1218847 | Msa0343210:CDS | 55.0% | |
| GTTGATTGTAGGGATGGGGG+TGG | + | chr3_1:1219882-1219901 | Msa0343210:CDS | 55.0% | |
| TAGGGATGGGGGTGGTATTG+AGG | + | chr3_1:1219890-1219909 | Msa0343210:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 1218739 | 1219989 | 1218739 | ID=Msa0343210;Name=Msa0343210 |
| chr3_1 | mRNA | 1218739 | 1219989 | 1218739 | ID=Msa0343210-mRNA-1;Parent=Msa0343210;Name=Msa0343210-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|416 |
| chr3_1 | exon | 1218739 | 1219989 | 1218739 | ID=Msa0343210-mRNA-1:exon:382;Parent=Msa0343210-mRNA-1 |
| chr3_1 | CDS | 1218739 | 1219989 | 1218739 | ID=Msa0343210-mRNA-1:cds;Parent=Msa0343210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
