AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0801490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0801490 MtrunA17_Chr5g0408591 97.496 559 13 1 1 559 1 558 0.0 1123
Msa0801490 MtrunA17_Chr7g0240501 46.354 384 195 2 102 474 168 551 9.94e-113 349
Msa0801490 MtrunA17_Chr4g0038651 47.383 363 183 3 117 471 86 448 1.22e-112 346
Msa0801490 MtrunA17_Chr3g0112731 45.596 386 199 4 114 488 96 481 2.21e-110 342
Msa0801490 MtrunA17_Chr5g0436141 45.812 382 196 3 120 490 84 465 1.19e-109 339
Msa0801490 MtrunA17_Chr4g0008771 46.832 363 187 2 118 474 96 458 1.06e-106 330
Msa0801490 MtrunA17_Chr4g0004771 45.961 359 175 6 118 471 90 434 4.85e-105 326
Msa0801490 MtrunA17_Chr2g0331631 46.067 356 181 5 118 471 86 432 3.80e-103 321
Msa0801490 MtrunA17_Chr8g0348921 44.267 375 184 4 117 471 96 465 5.85e-101 313
Msa0801490 MtrunA17_Chr6g0485861 45.455 363 186 6 122 482 100 452 3.42e-100 313
Msa0801490 MtrunA17_Chr7g0247761 39.089 417 186 5 118 471 113 524 8.48e-87 278
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0801490 AT1G31650.1 61.257 573 192 10 1 547 1 569 0.0 649
Msa0801490 AT1G31650.2 61.651 545 181 9 27 547 1 541 0.0 618
Msa0801490 AT4G38430.1 47.802 364 181 3 117 471 89 452 4.23e-112 345
Msa0801490 AT5G05940.1 45.220 387 197 3 117 488 101 487 7.29e-110 341
Msa0801490 AT5G02010.1 46.631 371 187 3 117 478 69 437 1.45e-109 338
Msa0801490 AT4G00460.2 40.586 478 231 11 18 471 18 466 8.62e-104 321
Msa0801490 AT4G00460.4 40.586 478 231 11 18 471 18 466 8.62e-104 321
Msa0801490 AT3G24620.1 43.716 366 196 3 115 479 82 438 1.69e-101 317
Msa0801490 AT1G79860.1 45.658 357 181 6 117 471 91 436 3.41e-101 315
Msa0801490 AT4G13240.1 45.152 361 188 4 115 474 71 422 3.21e-100 313
Msa0801490 AT1G01700.1 41.136 440 221 8 54 471 55 478 2.37e-99 310
Msa0801490 AT3G16130.1 43.324 367 196 4 117 480 89 446 3.39e-96 303
Msa0801490 AT5G05940.2 44.248 339 177 2 117 443 101 439 2.09e-95 300
Msa0801490 AT1G52240.1 43.923 362 190 5 114 474 100 449 9.52e-95 300
Msa0801490 AT1G01700.4 38.511 470 221 9 54 471 55 508 5.65e-93 294
Msa0801490 AT3G55660.1 43.213 361 196 4 117 468 106 466 3.92e-92 294
Msa0801490 AT5G19560.1 44.321 361 191 4 115 473 41 393 2.13e-90 287
Msa0801490 AT5G19560.5 44.321 361 191 4 115 473 41 393 2.13e-90 287
Msa0801490 AT5G19560.4 44.321 361 191 4 115 473 60 412 3.97e-90 286
Msa0801490 AT2G45890.1 42.204 372 190 5 117 471 92 455 6.96e-88 279
Msa0801490 AT1G01700.3 39.808 417 206 10 54 441 55 455 5.05e-84 269
Msa0801490 AT4G00460.3 42.515 334 167 5 155 471 8 333 8.51e-82 259
Msa0801490 AT3G55660.2 41.566 332 185 4 117 439 106 437 8.57e-81 260
Msa0801490 AT5G19560.2 42.813 327 177 4 115 439 60 378 2.47e-76 246
Msa0801490 AT4G00460.1 41.176 323 152 7 18 323 18 319 1.27e-66 220
Msa0801490 AT1G01700.5 42.361 288 137 5 54 323 55 331 5.25e-64 214
Msa0801490 AT1G01700.2 42.361 288 137 5 54 323 55 331 5.25e-64 214
Msa0801490 AT5G19560.3 40.449 267 149 4 209 473 5 263 2.36e-51 180

Find 124 sgRNAs with CRISPR-Local

Find 506 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATGAACAGTAACTAAATT+TGG 0.209605 5_3:+15459929 None:intergenic
AACAGCTTCCAATTTATTAA+TGG 0.226323 5_3:+15451435 None:intergenic
CCTTGAGACCATTAATAAAT+TGG 0.239944 5_3:-15451443 Msa0801490:CDS
TGATAAACTTGAGTTATTAT+TGG 0.246352 5_3:-15451317 Msa0801490:CDS
TCCTCAAGCAAAGATGCTTT+TGG 0.264241 5_3:-15453325 Msa0801490:CDS
TTGACAGCTGAATCAACTTC+TGG 0.292107 5_3:-15451511 Msa0801490:CDS
TTGTTATCTCTGTAGGATAT+TGG 0.303057 5_3:-15451032 Msa0801490:intron
GAAGCGTATTCCAGAGTTCT+TGG 0.321753 5_3:-15450996 Msa0801490:CDS
AAGAAAGAGGTTGGTTCATC+AGG 0.325300 5_3:-15451929 Msa0801490:CDS
AAGAAATGTTTGAGGAAGAT+TGG 0.333774 5_3:+15451252 None:intergenic
ATTTGGCAGCCTTGAATACT+TGG 0.340330 5_3:+15451893 None:intergenic
CTGCATAACAATGCAATCTA+AGG 0.341741 5_3:-15459726 Msa0801490:intron
CTCTTTCTTTCTTCAGATAG+AGG 0.341999 5_3:+15452541 None:intergenic
TCAGGAATTATGACATATAA+TGG 0.343998 5_3:-15453454 Msa0801490:intron
TCAGAGATATTATTTATTCC+AGG 0.347750 5_3:+15450888 None:intergenic
TTACTTGGTGAAGATGTTAC+TGG 0.361690 5_3:-15453139 Msa0801490:CDS
CAATGGTGAAAACAGAGTTT+TGG 0.364768 5_3:-15452062 Msa0801490:CDS
CAAATTTAGTTACTGTTCAT+AGG 0.371536 5_3:-15459928 Msa0801490:five_prime_UTR
GAGCAAATGGCGAAGAGAAA+TGG 0.382512 5_3:-15452521 Msa0801490:CDS
GTGTAGCTATTATCACATCT+TGG 0.389486 5_3:+15450748 None:intergenic
ATGAACCAACCTCTTTCTTT+CGG 0.392462 5_3:+15451933 None:intergenic
GGATATTGGACATTCCATTC+TGG 0.394307 5_3:-15451018 Msa0801490:CDS
CAAAGTGTTTAACAATGAAA+AGG 0.400663 5_3:-15453291 Msa0801490:CDS
GATGCTGCTAAAGTTCAATA+TGG 0.402749 5_3:-15451229 Msa0801490:CDS
TAAGCATAGAGTCCAACTTC+TGG 0.406157 5_3:+15452281 None:intergenic
GATGAGAATAAAGTAATGTA+TGG 0.412466 5_3:+15459861 None:intergenic
CACACTCATGTCTTTCCCTT+CGG 0.412875 5_3:+15452017 None:intergenic
TGTAGCTATTATCACATCTT+GGG 0.415683 5_3:+15450749 None:intergenic
TGAATGTCTGCACGAGCTTT+AGG 0.436123 5_3:+15452322 None:intergenic
AATCACCGGTTCGAACTTCA+TGG 0.438603 5_3:-15451369 Msa0801490:CDS
AGAAATGTTTGAGGAAGATT+GGG 0.439291 5_3:+15451253 None:intergenic
AGAACTATGGAACAAGTTAC+TGG 0.440000 5_3:-15451394 Msa0801490:CDS
ACTGTCTCCTACAAACTATA+TGG 0.440626 5_3:-15452491 Msa0801490:CDS
AGTTTATCAGCTTCTGACAT+AGG 0.450031 5_3:+15451331 None:intergenic
ATGAACTAGGACTTGAAGAA+TGG 0.456615 5_3:-15453264 Msa0801490:CDS
AGCTCAACCATATAGTTTGT+AGG 0.458810 5_3:+15452484 None:intergenic
AGATGTTACTGGAGGAACTA+AGG 0.464313 5_3:-15453128 Msa0801490:CDS
AGCAGAACAAGTAGAGGAGA+TGG 0.465943 5_3:-15453388 Msa0801490:CDS
CTGAAGAAAGAAAGAGCAAA+TGG 0.467672 5_3:-15452534 Msa0801490:CDS
GGTCTCAAGGGCCATATGTT+CGG 0.469228 5_3:+15451456 None:intergenic
AAAGTGTTTAACAATGAAAA+GGG 0.471202 5_3:-15453290 Msa0801490:CDS
TAAGGGCATCACTACAGCTT+TGG 0.471817 5_3:-15453110 Msa0801490:CDS
AACTCACTAAGTTGCTCCCC+TGG 0.474068 5_3:-15450906 Msa0801490:CDS
CAATTTGAAATCCGAACATA+TGG 0.474139 5_3:-15451467 Msa0801490:CDS
ATAAGAATATAGAGAGAGGA+AGG 0.475890 5_3:+15459900 None:intergenic
AATGCCATCACAAACTTGTC+AGG 0.477719 5_3:-15453079 Msa0801490:intron
GAGTCCAACTTCTGGAGTGC+TGG 0.477913 5_3:+15452289 None:intergenic
TTCAGATATTGAAGCTATGA+AGG 0.481691 5_3:-15453179 Msa0801490:CDS
TCTTCCAGCACTCCAGAAGT+TGG 0.489929 5_3:-15452293 Msa0801490:CDS
GGCTAAATTTCCAAGAACTC+TGG 0.491194 5_3:+15450986 None:intergenic
GGTGGTACGCCAAGTATTCA+AGG 0.491614 5_3:-15451902 Msa0801490:CDS
CCAATTTATTAATGGTCTCA+AGG 0.492231 5_3:+15451443 None:intergenic
GAGATGTTTAGAATGAAGAA+AGG 0.494814 5_3:-15458434 Msa0801490:CDS
TGAACTAGGACTTGAAGAAT+GGG 0.498896 5_3:-15453263 Msa0801490:CDS
TAAATAATATCTCTGAAACT+TGG 0.499561 5_3:-15450881 Msa0801490:CDS
GTTTATCAGCTTCTGACATA+GGG 0.501172 5_3:+15451332 None:intergenic
TGCCAATGGTAGAATCTTTG+AGG 0.504782 5_3:-15452440 Msa0801490:intron
AGTTTGTTAGAGCTTAACTT+TGG 0.505063 5_3:+15450387 None:intergenic
GAGGGAGGAAGCAGGACCGA+AGG 0.507585 5_3:-15452033 Msa0801490:CDS
ACAGGATGCACTTGATTCAA+TGG 0.509215 5_3:-15452079 Msa0801490:intron
CCTTGTGCAGTTCTTGTCCA+AGG 0.510155 5_3:+15451536 None:intergenic
GCAGCATCAAGAAATGTTTG+AGG 0.512844 5_3:+15451244 None:intergenic
TGATACCGAAAGAAAGAGGT+TGG 0.513523 5_3:-15451938 Msa0801490:CDS
CAATTTATTAATGGTCTCAA+GGG 0.515889 5_3:+15451444 None:intergenic
CAGAGATATTATTTATTCCA+GGG 0.516460 5_3:+15450889 None:intergenic
CTCGTTGAAAGAGAGAACTA+TGG 0.524461 5_3:-15451407 Msa0801490:CDS
CACCAAGCAGGAGTAGTGTC+TGG 0.526331 5_3:-15450728 Msa0801490:CDS
AATGTATGGAGGAAGAAGAA+TGG 0.526877 5_3:+15459875 None:intergenic
AAAGTATGGACTTACTCTCT+TGG 0.527670 5_3:+15458363 None:intergenic
GACTAGCTTGCTGCAGCAGA+GGG 0.530037 5_3:-15458412 Msa0801490:CDS
TACCTCAAAGATTCTACCAT+TGG 0.531632 5_3:+15452438 None:intergenic
CTCTATGTTGCAGTCTGGAA+AGG 0.532305 5_3:-15451563 Msa0801490:intron
TAGCTTCAATATCTGAACGT+TGG 0.537633 5_3:+15453185 None:intergenic
GAGAATAAAGTAATGTATGG+AGG 0.538610 5_3:+15459864 None:intergenic
ATGAAAAGGGAGGATGAACT+AGG 0.545307 5_3:-15453277 Msa0801490:CDS
TTCAGCATATTGTCTAGAAT+AGG 0.545508 5_3:-15450963 Msa0801490:CDS
CACCAGACACTACTCCTGCT+TGG 0.546870 5_3:+15450726 None:intergenic
AAAGACCATGAAGTTCGAAC+CGG 0.547808 5_3:+15451364 None:intergenic
GAACGTTGGATTGCATAAGA+AGG 0.548221 5_3:+15453199 None:intergenic
TCTGGAATACGCTTCCAGAA+TGG 0.548749 5_3:+15451004 None:intergenic
TAATATCTCTGAAACTTGGA+TGG 0.549387 5_3:-15450877 Msa0801490:CDS
AAACAATCAGTCTTATGAAG+AGG 0.554003 5_3:-15453413 Msa0801490:CDS
TTTCTGATACCGAAAGAAAG+AGG 0.554133 5_3:-15451942 Msa0801490:CDS
AGAGATATTATTTATTCCAG+GGG 0.565546 5_3:+15450890 None:intergenic
TATTAGAGATGCACTTGCAA+AGG 0.565718 5_3:-15451827 Msa0801490:intron
GATGTTACTGGAGGAACTAA+GGG 0.566443 5_3:-15453127 Msa0801490:CDS
AGAAAGAGGTTGGTTCATCA+GGG 0.566470 5_3:-15451928 Msa0801490:CDS
AGGGAGGAAGCAGGACCGAA+GGG 0.567526 5_3:-15452032 Msa0801490:CDS
TTATGCAGTGAAAAGTTCAA+TGG 0.568269 5_3:+15459741 None:intergenic
TCCAAAAGCATCTTTGCTTG+AGG 0.568575 5_3:+15453324 None:intergenic
TGATAATAGCTACACCAAGC+AGG 0.570801 5_3:-15450740 Msa0801490:CDS
GGATATAAGAATATAGAGAG+AGG 0.573068 5_3:+15459896 None:intergenic
GTTCTTTATTGACAATGAAG+AGG 0.574025 5_3:-15450539 Msa0801490:three_prime_UTR
TCTCTAATAACCGTTGGCAC+AGG 0.574892 5_3:+15451841 None:intergenic
CAAAAGATGAACAAAGCAGA+TGG 0.584707 5_3:-15450825 Msa0801490:CDS
GGTATGGTGAGGGAGGAAGC+AGG 0.588600 5_3:-15452041 Msa0801490:CDS
GCTTGAAATGCCTGTGCCAA+CGG 0.588660 5_3:-15451851 Msa0801490:CDS
CAGTCTGGAAAGGCAAACCT+TGG 0.594632 5_3:-15451553 Msa0801490:CDS
ACAAGTTACTGGCAAATCAC+CGG 0.594634 5_3:-15451383 Msa0801490:CDS
GAGGAAAGCAGAACAAGTAG+AGG 0.594944 5_3:-15453394 Msa0801490:CDS
GGACTAGCTTGCTGCAGCAG+AGG 0.599307 5_3:-15458413 Msa0801490:CDS
TGCTAAAGTTCAATATGGCA+AGG 0.601273 5_3:-15451224 Msa0801490:intron
AATAGGAGATATATTACAAG+AGG 0.605594 5_3:-15450946 Msa0801490:CDS
TATTCTAGACAATATGCTGA+AGG 0.609235 5_3:+15450965 None:intergenic
GAGGTTGGTTCATCAGGGAA+AGG 0.610824 5_3:-15451923 Msa0801490:CDS
TATCTCTGAAACTTGGATGG+TGG 0.612314 5_3:-15450874 Msa0801490:CDS
AGAACAAGTAGAGGAGATGG+AGG 0.618149 5_3:-15453385 Msa0801490:CDS
CCTTGGACAAGAACTGCACA+AGG 0.620947 5_3:-15451536 Msa0801490:CDS
AATGGCGAAGAGAAATGGAC+TGG 0.621786 5_3:-15452516 Msa0801490:CDS
AGTGCATCTCTAATAACCGT+TGG 0.622837 5_3:+15451835 None:intergenic
CAAGCTTAAGCATATAGCAA+TGG 0.623474 5_3:+15459770 None:intergenic
GCTAAGCAAAACAATGCCAA+TGG 0.628095 5_3:-15452454 Msa0801490:CDS
CAAGGTCCAATCAAATTCAA+CGG 0.635223 5_3:-15459953 None:intergenic
AGTGAAAAGTTCAATGGTGA+TGG 0.637154 5_3:+15459747 None:intergenic
GTTGGTTCATCAGGGAAAGG+TGG 0.638880 5_3:-15451920 Msa0801490:CDS
CATACCTGACAAGTTTGTGA+TGG 0.644339 5_3:+15453075 None:intergenic
TAACAAATATAGTTGTACTG+TGG 0.647274 5_3:+15458465 None:intergenic
TGTCTGGTGCATTAGTAGAG+AGG 0.658828 5_3:-15450712 Msa0801490:CDS
CTTGGTGAAGATGTTACTGG+AGG 0.664082 5_3:-15453136 Msa0801490:CDS
GTGTGCGGCATAGTAAAAGA+TGG 0.678764 5_3:-15451999 Msa0801490:CDS
GTGTTTAACAATGAAAAGGG+AGG 0.680778 5_3:-15453287 Msa0801490:CDS
TGCGGCATAGTAAAAGATGG+TGG 0.684737 5_3:-15451996 Msa0801490:CDS
AAGGGAAAGACATGAGTGTG+CGG 0.684788 5_3:-15452014 Msa0801490:CDS
GCTGTAAAAGTGTTTCAGCA+CGG 0.690145 5_3:+15451293 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAAATAAATTCATAGA+CGG + chr5_3:15450971-15450990 None:intergenic 10.0%
!!! TTTAGAATAATACTATATTT+TGG - chr5_3:15451811-15451830 Msa0801490:intron 10.0%
!! AAATTATAATTCTTTGATAA+CGG - chr5_3:15453161-15453180 Msa0801490:CDS 10.0%
!!! TTTAATATTTAAGTTTACTA+TGG - chr5_3:15453623-15453642 Msa0801490:intron 10.0%
!!! AATTTTTATTTATTATCGTT+TGG - chr5_3:15453656-15453675 Msa0801490:intron 10.0%
!! AAGAAAAATATATGTATAAT+TGG + chr5_3:15453979-15453998 None:intergenic 10.0%
!! AATTTGTAATATTAAAATGT+GGG + chr5_3:15454814-15454833 None:intergenic 10.0%
!! AAATTTGTAATATTAAAATG+TGG + chr5_3:15454815-15454834 None:intergenic 10.0%
!! AAGTAATAAAATTCATAAAA+AGG + chr5_3:15455422-15455441 None:intergenic 10.0%
!!! ATGAATTTTATTACTTATAA+TGG - chr5_3:15455426-15455445 Msa0801490:intron 10.0%
!!! TTTAATGTTTTTTTTTTTCT+GGG + chr5_3:15455718-15455737 None:intergenic 10.0%
!!! TTTTATTTTAATTTCATGTT+TGG + chr5_3:15455940-15455959 None:intergenic 10.0%
!! TAATAAATATTTACCATTTA+TGG + chr5_3:15456045-15456064 None:intergenic 10.0%
!! TATATAATCTATAATCTATA+AGG - chr5_3:15456112-15456131 Msa0801490:intron 10.0%
!!! TATTTTATGAGTTTATATAA+TGG - chr5_3:15456855-15456874 Msa0801490:intron 10.0%
!! TTATAAATAAATTCATAGAC+GGG + chr5_3:15450970-15450989 None:intergenic 15.0%
!! AACTTTAATCAAAATATGAT+TGG + chr5_3:15450999-15451018 None:intergenic 15.0%
!! TTGTGAAGATTAATTTAAAA+TGG - chr5_3:15451189-15451208 Msa0801490:intron 15.0%
!!! TGTGAAGATTAATTTAAAAT+GGG - chr5_3:15451190-15451209 Msa0801490:intron 15.0%
!!! TTATTTTATAATGAGACTTT+GGG - chr5_3:15451337-15451356 Msa0801490:CDS 15.0%
!!! GTATTTTGTACATAAAATAA+AGG - chr5_3:15452511-15452530 Msa0801490:CDS 15.0%
!! TTGTTGATATTACATTAAAA+AGG - chr5_3:15452588-15452607 Msa0801490:intron 15.0%
!! TGTTGATATTACATTAAAAA+GGG - chr5_3:15452589-15452608 Msa0801490:intron 15.0%
!! ACATATGATAATTAAAACAA+GGG + chr5_3:15452907-15452926 None:intergenic 15.0%
!!! TTTAATTATCATATGTGTTT+TGG - chr5_3:15452911-15452930 Msa0801490:intron 15.0%
!!! TTAATTATCATATGTGTTTT+GGG - chr5_3:15452912-15452931 Msa0801490:intron 15.0%
!! AACTTAAATATTAAATTCCA+TGG + chr5_3:15453618-15453637 None:intergenic 15.0%
!!! ATTTTAAAGTCAATTTGTTA+TGG + chr5_3:15453744-15453763 None:intergenic 15.0%
!!! TACATATATTTTTCTTACAA+TGG - chr5_3:15453983-15454002 Msa0801490:intron 15.0%
!!! GTTTTGTTATTTCATAAATT+TGG + chr5_3:15454060-15454079 None:intergenic 15.0%
!! ATTATCATTATCAAAAACAA+AGG + chr5_3:15454675-15454694 None:intergenic 15.0%
!! ATTACAAATTTCTTACTATT+TGG - chr5_3:15454824-15454843 Msa0801490:intron 15.0%
!! TTTCTTTCTTTCTAATTATT+AGG - chr5_3:15454924-15454943 Msa0801490:intron 15.0%
!!! ATTTTGATCTTTTCATAAAA+AGG + chr5_3:15455644-15455663 None:intergenic 15.0%
!!! CTTTAATGTTTTTTTTTTTC+TGG + chr5_3:15455719-15455738 None:intergenic 15.0%
!! GAAAAAAAAAAACATTAAAG+TGG - chr5_3:15455719-15455738 Msa0801490:intron 15.0%
!!! ACATTTTTTATAAAGGATAA+AGG - chr5_3:15456150-15456169 Msa0801490:intron 15.0%
!!! TTAAAACCATGATATATTTT+TGG + chr5_3:15456596-15456615 None:intergenic 15.0%
!!! ATATCATGGTTTTAATTAAT+TGG - chr5_3:15456601-15456620 Msa0801490:intron 15.0%
!!! TAGTTTTTTTTTATGTCAAA+AGG - chr5_3:15456750-15456769 Msa0801490:intron 15.0%
!!! ATATTTATGATTTTCCAAAA+GGG + chr5_3:15456838-15456857 None:intergenic 15.0%
!!! AATATTTATGATTTTCCAAA+AGG + chr5_3:15456839-15456858 None:intergenic 15.0%
!!! ATTCATTTCTATTTTTCTTT+CGG - chr5_3:15457697-15457716 Msa0801490:intron 15.0%
!! TCAGATATAAAAAAAATCTA+TGG + chr5_3:15459681-15459700 None:intergenic 15.0%
!!! TTTTTTATACTGAAAGTTGA+TGG - chr5_3:15450702-15450721 Msa0801490:CDS 20.0%
!! AGATCAAATAAAAAAGAGAA+AGG + chr5_3:15450762-15450781 None:intergenic 20.0%
!!! AAGTTTTTCAAAAGTAAATG+AGG + chr5_3:15450793-15450812 None:intergenic 20.0%
!! TTTGATTAAAGTTCTTAGAA+TGG - chr5_3:15451006-15451025 Msa0801490:CDS 20.0%
!! TTGATTAAAGTTCTTAGAAT+GGG - chr5_3:15451007-15451026 Msa0801490:CDS 20.0%
!! TGTTAACTATTTGATTCTTA+TGG - chr5_3:15451049-15451068 Msa0801490:intron 20.0%
!! GTTAACTATTTGATTCTTAT+GGG - chr5_3:15451050-15451069 Msa0801490:intron 20.0%
!! AAGTCTCATTATAAAATAAC+AGG + chr5_3:15451336-15451355 None:intergenic 20.0%
!!! GTTATTTTATAATGAGACTT+TGG - chr5_3:15451336-15451355 Msa0801490:CDS 20.0%
!! GACATAGTTTAATAAAAGTA+TGG + chr5_3:15451992-15452011 None:intergenic 20.0%
!!! ATAAACCATAGTTTGTTTTA+AGG - chr5_3:15452087-15452106 Msa0801490:intron 20.0%
!!! TAAACCATAGTTTGTTTTAA+GGG - chr5_3:15452088-15452107 Msa0801490:intron 20.0%
!! AAAGTCAAAGAAAATTGTTA+AGG + chr5_3:15452391-15452410 None:intergenic 20.0%
!!! TATAACTTTTGCAACATTTA+GGG + chr5_3:15452808-15452827 None:intergenic 20.0%
!! CACATATGATAATTAAAACA+AGG + chr5_3:15452908-15452927 None:intergenic 20.0%
!!! AAAATTCAAAACACAACTTT+TGG - chr5_3:15452974-15452993 Msa0801490:intron 20.0%
!!! TTATTTCGACATTTTTTTGT+CGG + chr5_3:15453051-15453070 None:intergenic 20.0%
!! AAAAAAATGTCGAAATAACT+AGG - chr5_3:15453053-15453072 Msa0801490:intron 20.0%
!!! AATATTTTACTGTAGAGATT+TGG - chr5_3:15453260-15453279 Msa0801490:CDS 20.0%
!! TTAAATTTAAGTGACCAAAA+CGG + chr5_3:15453903-15453922 None:intergenic 20.0%
!!! TTTAAAATAGAGAAGATTTC+AGG - chr5_3:15453944-15453963 Msa0801490:intron 20.0%
!! TTAAAATAGAGAAGATTTCA+GGG - chr5_3:15453945-15453964 Msa0801490:intron 20.0%
!!! GTTTTTGATAATGATAATGA+AGG - chr5_3:15454677-15454696 Msa0801490:intron 20.0%
!!! CAATAATACCATATTTTTGA+AGG - chr5_3:15454708-15454727 Msa0801490:intron 20.0%
!! AAATTTCTTACTATTTGGAT+AGG - chr5_3:15454829-15454848 Msa0801490:intron 20.0%
!! TTTGTCTCATATAAAATGTA+AGG - chr5_3:15455023-15455042 Msa0801490:intron 20.0%
!! TTCATAAAAAGGTAAACAAA+GGG + chr5_3:15455633-15455652 None:intergenic 20.0%
!! TTTCATAAAAAGGTAAACAA+AGG + chr5_3:15455634-15455653 None:intergenic 20.0%
!! TATACGTGGTTTATAATTAT+GGG - chr5_3:15455988-15456007 Msa0801490:intron 20.0%
!!! CTAGCATACATTTTTTATAA+AGG - chr5_3:15456143-15456162 Msa0801490:intron 20.0%
!!! TCTAGCATACATTTTTATAA+AGG - chr5_3:15456180-15456199 Msa0801490:intron 20.0%
!!! AGTTGATACAAACTTTTATA+CGG + chr5_3:15456408-15456427 None:intergenic 20.0%
!! TAAATTATTTGCATTGCTAT+TGG + chr5_3:15456504-15456523 None:intergenic 20.0%
!! ATGTAACCAAAAATATATCA+TGG - chr5_3:15456587-15456606 Msa0801490:intron 20.0%
!!! AATATATTCTTGCATTGTTT+TGG - chr5_3:15456694-15456713 Msa0801490:intron 20.0%
!!! TATTTATGATTTTCCAAAAG+GGG + chr5_3:15456837-15456856 None:intergenic 20.0%
!!! TTTATATAATGGAACATTTC+AGG - chr5_3:15456866-15456885 Msa0801490:intron 20.0%
!!! AAAGTGTTTAACAATGAAAA+GGG - chr5_3:15457048-15457067 Msa0801490:intron 20.0%
!!! AATCATGTTAATTTTAGACT+AGG + chr5_3:15457434-15457453 None:intergenic 20.0%
!!! AAATTAACATGATTCGTTTT+AGG - chr5_3:15457440-15457459 Msa0801490:intron 20.0%
!!! TGACACTTTAAAAAAGATAA+AGG - chr5_3:15457628-15457647 Msa0801490:intron 20.0%
!!! AACAAAACTTTCTTATTTAG+TGG + chr5_3:15457977-15457996 None:intergenic 20.0%
!!! AAATAAGAAAGTTTTGTTCT+TGG - chr5_3:15457979-15457998 Msa0801490:intron 20.0%
!! AATAAATTCTAATGCATTGA+AGG - chr5_3:15458567-15458586 Msa0801490:intron 20.0%
!! TTTAGCAATAATAAGTTTGA+AGG + chr5_3:15458630-15458649 None:intergenic 20.0%
!! TAAATCAAATCATAATCACA+TGG - chr5_3:15458707-15458726 Msa0801490:intron 20.0%
!! TGATAAACTTGAGTTATTAT+TGG - chr5_3:15459021-15459040 Msa0801490:intron 20.0%
!!! TAAATAATATCTCTGAAACT+TGG - chr5_3:15459457-15459476 Msa0801490:intron 20.0%
! CTATGAACAGTAACTAAATT+TGG + chr5_3:15450412-15450431 None:intergenic 25.0%
! CAAATTTAGTTACTGTTCAT+AGG - chr5_3:15450410-15450429 Msa0801490:three_prime_UTR 25.0%
! GATGAGAATAAAGTAATGTA+TGG + chr5_3:15450480-15450499 None:intergenic 25.0%
! CAGAACAGTAAAAAATATAC+TGG + chr5_3:15450867-15450886 None:intergenic 25.0%
!!! CAGTATATTTTTTACTGTTC+TGG - chr5_3:15450865-15450884 Msa0801490:CDS 25.0%
! GTATGGCACATTATTAATTT+AGG - chr5_3:15451307-15451326 Msa0801490:CDS 25.0%
! GAGAGAGAATAATAATTGAA+TGG - chr5_3:15451450-15451469 Msa0801490:CDS 25.0%
! TTTAGATGAAAGAGAATGAA+TGG - chr5_3:15451486-15451505 Msa0801490:CDS 25.0%
! ATTGATCGCTACAAAATTAA+GGG + chr5_3:15451572-15451591 None:intergenic 25.0%
!!! TACTATATTTTGGACATTGT+TGG - chr5_3:15451821-15451840 Msa0801490:intron 25.0%
! TAACAAATATAGTTGTACTG+TGG + chr5_3:15451876-15451895 None:intergenic 25.0%
! ATTTCCCTTAAAACAAACTA+TGG + chr5_3:15452095-15452114 None:intergenic 25.0%
!!! AGATGATTGTTTTAGTTGTT+TGG - chr5_3:15452291-15452310 Msa0801490:CDS 25.0%
! GAAAATTGTTAAGGTTACAA+GGG + chr5_3:15452382-15452401 None:intergenic 25.0%
! AGAAAATTGTTAAGGTTACA+AGG + chr5_3:15452383-15452402 None:intergenic 25.0%
! CAGTGCATTAAAAAAGTAAT+TGG + chr5_3:15452537-15452556 None:intergenic 25.0%
!! GTATAACTTTTGCAACATTT+AGG + chr5_3:15452809-15452828 None:intergenic 25.0%
!!! CTAGTACTTTTTTTATTGAG+AGG + chr5_3:15453023-15453042 None:intergenic 25.0%
!! AATTTTCCTTACTTTCTCTA+TGG - chr5_3:15453319-15453338 Msa0801490:CDS 25.0%
! TTGACATTCAAAAAAGATAG+TGG - chr5_3:15453535-15453554 Msa0801490:intron 25.0%
! AATGATACAATGAAATTCCA+TGG - chr5_3:15453598-15453617 Msa0801490:intron 25.0%
!! TTTGGAATTTCTTGTATATG+AGG - chr5_3:15453674-15453693 Msa0801490:intron 25.0%
! TTGGAATTTCTTGTATATGA+GGG - chr5_3:15453675-15453694 Msa0801490:intron 25.0%
! TTGTAATGATATCCACAAAA+AGG - chr5_3:15453788-15453807 Msa0801490:intron 25.0%
!!! TTGCAAATGAAATTTTAGTG+TGG + chr5_3:15453876-15453895 None:intergenic 25.0%
!! GGTCACTTAAATTTAAAGTA+AGG - chr5_3:15453907-15453926 Msa0801490:intron 25.0%
!! CAAAGATGTTTACTGTTTTA+AGG - chr5_3:15454129-15454148 Msa0801490:intron 25.0%
!!! TGTTTTAAGGATGAAAATGA+TGG - chr5_3:15454142-15454161 Msa0801490:intron 25.0%
! TATCATGTTAGATGTGATAT+GGG - chr5_3:15454219-15454238 Msa0801490:intron 25.0%
! TTGATTTATATGAAGCAAGT+AGG - chr5_3:15454252-15454271 Msa0801490:intron 25.0%
! AGGCATAATAAAAACACTAA+TGG + chr5_3:15454360-15454379 None:intergenic 25.0%
! GTAAATTAGTCCAATTGATA+AGG + chr5_3:15454643-15454662 None:intergenic 25.0%
! TTTAGTGTCCTTCAAAAATA+TGG + chr5_3:15454719-15454738 None:intergenic 25.0%
! TTTCCTAAGTACATTGTTTA+AGG - chr5_3:15455061-15455080 Msa0801490:intron 25.0%
! ATTCCTTAAACAATGTACTT+AGG + chr5_3:15455067-15455086 None:intergenic 25.0%
!!! AACAAAGGTATATTGATTTG+GGG + chr5_3:15455266-15455285 None:intergenic 25.0%
!!! GAACAAAGGTATATTGATTT+GGG + chr5_3:15455267-15455286 None:intergenic 25.0%
!! AGAACAAAGGTATATTGATT+TGG + chr5_3:15455268-15455287 None:intergenic 25.0%
! TCTAATTATCGAAAGAACAA+AGG + chr5_3:15455281-15455300 None:intergenic 25.0%
! CTATACGTGGTTTATAATTA+TGG - chr5_3:15455987-15456006 Msa0801490:intron 25.0%
! CATGTTAAAGATTCCATAAA+TGG - chr5_3:15456029-15456048 Msa0801490:intron 25.0%
!!! GTTTAGTCATATGCTATTTT+TGG - chr5_3:15456634-15456653 Msa0801490:intron 25.0%
!! ACTATGTTCTAGACTATATT+TGG - chr5_3:15456777-15456796 Msa0801490:intron 25.0%
! TCAGGAATTATGACATATAA+TGG - chr5_3:15456884-15456903 Msa0801490:intron 25.0%
!! CAAAGTGTTTAACAATGAAA+AGG - chr5_3:15457047-15457066 Msa0801490:intron 25.0%
! TCTTTGACATAAAAATGTTG+AGG + chr5_3:15457115-15457134 None:intergenic 25.0%
!! AAATTTTCAAAGCTCTTACT+TGG - chr5_3:15457184-15457203 Msa0801490:intron 25.0%
! TTTAAAAACGTCAACATTGT+TGG - chr5_3:15457312-15457331 Msa0801490:intron 25.0%
! AAGCTCTTGACTATTTAAAA+AGG - chr5_3:15457347-15457366 Msa0801490:intron 25.0%
! ATGAACGTTGAATTATACTA+TGG + chr5_3:15457532-15457551 None:intergenic 25.0%
! GATCATATAAGTACATAGAT+TGG + chr5_3:15457737-15457756 None:intergenic 25.0%
! ATCTTTACTAGCAACATATT+AGG - chr5_3:15458200-15458219 Msa0801490:intron 25.0%
!! TATTTGGATTATTTGTTGAC+AGG - chr5_3:15458241-15458260 Msa0801490:intron 25.0%
!! CACATTTTCATTGATAGATT+TGG + chr5_3:15458465-15458484 None:intergenic 25.0%
! AATCACATATTAAGTGTCTA+TGG + chr5_3:15458600-15458619 None:intergenic 25.0%
! TGACTATTTGATTATAACCT+AGG - chr5_3:15458671-15458690 Msa0801490:intron 25.0%
! TTTAAGCAATAACATATCCT+AGG + chr5_3:15458691-15458710 None:intergenic 25.0%
! CAATTTATTAATGGTCTCAA+GGG + chr5_3:15458897-15458916 None:intergenic 25.0%
! AACAGCTTCCAATTTATTAA+TGG + chr5_3:15458906-15458925 None:intergenic 25.0%
! AATAGGAGATATATTACAAG+AGG - chr5_3:15459392-15459411 Msa0801490:intron 25.0%
! AGAGATATTATTTATTCCAG+GGG + chr5_3:15459451-15459470 None:intergenic 25.0%
! CAGAGATATTATTTATTCCA+GGG + chr5_3:15459452-15459471 None:intergenic 25.0%
! TCAGAGATATTATTTATTCC+AGG + chr5_3:15459453-15459472 None:intergenic 25.0%
!!! TTTGTTCATCTTTTGAAGTA+AGG + chr5_3:15459508-15459527 None:intergenic 25.0%
ATAAGAATATAGAGAGAGGA+AGG + chr5_3:15450441-15450460 None:intergenic 30.0%
GGATATAAGAATATAGAGAG+AGG + chr5_3:15450445-15450464 None:intergenic 30.0%
GAGAATAAAGTAATGTATGG+AGG + chr5_3:15450477-15450496 None:intergenic 30.0%
TTATGCAGTGAAAAGTTCAA+TGG + chr5_3:15450600-15450619 None:intergenic 30.0%
TCAAAAGTAAATGAGGATGA+AGG + chr5_3:15450786-15450805 None:intergenic 30.0%
ATTCATAGACGGGAAAAAAA+AGG + chr5_3:15450960-15450979 None:intergenic 30.0%
! TGGGTATGATCAATTCTTTT+TGG - chr5_3:15451026-15451045 Msa0801490:intron 30.0%
! TTTTACTTTAATCGTGCTCA+TGG - chr5_3:15451226-15451245 Msa0801490:CDS 30.0%
!!! TTACTTCCCTTATGCTTTTT+TGG - chr5_3:15451258-15451277 Msa0801490:CDS 30.0%
! ATTTCGCCAAAAAAGCATAA+GGG + chr5_3:15451267-15451286 None:intergenic 30.0%
TCGTATATGTTACAAACGTA+TGG - chr5_3:15451290-15451309 Msa0801490:CDS 30.0%
TGGCACATTATTAATTTAGG+TGG - chr5_3:15451310-15451329 Msa0801490:CDS 30.0%
! TCCTTGGTGATTAATTGATT+TGG - chr5_3:15451363-15451382 Msa0801490:CDS 30.0%
TCCAAATCAATTAATCACCA+AGG + chr5_3:15451367-15451386 None:intergenic 30.0%
! GACGTAGATACCTTAATTTT+GGG - chr5_3:15451385-15451404 Msa0801490:CDS 30.0%
!! TCTCCTTTAAAATGCACTAA+AGG + chr5_3:15451434-15451453 None:intergenic 30.0%
AATGAATGGTTTAGAGAGAT+AGG - chr5_3:15451500-15451519 Msa0801490:CDS 30.0%
TTGATCGCTACAAAATTAAG+GGG + chr5_3:15451571-15451590 None:intergenic 30.0%
CATTGATCGCTACAAAATTA+AGG + chr5_3:15451573-15451592 None:intergenic 30.0%
! CTTAATTTTGTAGCGATCAA+TGG - chr5_3:15451571-15451590 Msa0801490:intron 30.0%
GTACGTGAAATTAAATGCTT+AGG - chr5_3:15451669-15451688 Msa0801490:intron 30.0%
TTCGACATAAATGTATACTG+AGG + chr5_3:15451728-15451747 None:intergenic 30.0%
TGTCGAAATTTCATAAAGTG+TGG - chr5_3:15451741-15451760 Msa0801490:intron 30.0%
GTCGAAATTTCATAAAGTGT+GGG - chr5_3:15451742-15451761 Msa0801490:intron 30.0%
! GAGATGTTTAGAATGAAGAA+AGG - chr5_3:15451904-15451923 Msa0801490:CDS 30.0%
GTAAGAGGAAAGATTGTTAA+AGG - chr5_3:15452236-15452255 Msa0801490:intron 30.0%
! GTTAAAGGAAAGAAAGTATG+AGG - chr5_3:15452251-15452270 Msa0801490:intron 30.0%
GAAAGTGAAAAGAAAGTGAA+AGG - chr5_3:15452321-15452340 Msa0801490:CDS 30.0%
CAACTTTAGCAGGAAAAAAA+GGG - chr5_3:15452485-15452504 Msa0801490:CDS 30.0%
AACTTTAGCAGGAAAAAAAG+GGG - chr5_3:15452486-15452505 Msa0801490:CDS 30.0%
!! TTGTCCTTTTCTAAAAAGCA+TGG - chr5_3:15452618-15452637 Msa0801490:intron 30.0%
!!! AAGGAAAGAAAGTTTTAGGT+GGG + chr5_3:15452695-15452714 None:intergenic 30.0%
!!! AAAGGAAAGAAAGTTTTAGG+TGG + chr5_3:15452696-15452715 None:intergenic 30.0%
! GAGAAAGGAAAGAAAGTTTT+AGG + chr5_3:15452699-15452718 None:intergenic 30.0%
! TTTTATTGAGAGGTTGAGAT+AGG + chr5_3:15453013-15453032 None:intergenic 30.0%
TTCAAACCATAGAGAAAGTA+AGG + chr5_3:15453328-15453347 None:intergenic 30.0%
ATAAATGTGTCCTACAATAG+AGG + chr5_3:15453430-15453449 None:intergenic 30.0%
GTTGCATAAAACAATAGTGA+AGG + chr5_3:15453498-15453517 None:intergenic 30.0%
ATTTCTTGTATATGAGGGAA+TGG - chr5_3:15453680-15453699 Msa0801490:intron 30.0%
!! AGTGTGGAAGTTATTTTCAT+TGG + chr5_3:15453860-15453879 None:intergenic 30.0%
TACAAATTTGCGAGATAAAG+AGG - chr5_3:15454021-15454040 Msa0801490:intron 30.0%
TTGAAGAGTGATGACATTTA+TGG + chr5_3:15454112-15454131 None:intergenic 30.0%
TCACATCTAACATGATAGAA+CGG + chr5_3:15454216-15454235 None:intergenic 30.0%
CTATCATGTTAGATGTGATA+TGG - chr5_3:15454218-15454237 Msa0801490:intron 30.0%
ATTTATATGAAGCAAGTAGG+AGG - chr5_3:15454255-15454274 Msa0801490:intron 30.0%
TGTTTCAAATCACAATCTGA+AGG - chr5_3:15454300-15454319 Msa0801490:intron 30.0%
!! CACTCACAAAATTTAGTTTG+TGG - chr5_3:15454424-15454443 Msa0801490:intron 30.0%
ATGATTCAATAGTAGAGATC+AGG + chr5_3:15454562-15454581 None:intergenic 30.0%
GATCTCTACTATTGAATCAT+TGG - chr5_3:15454562-15454581 Msa0801490:intron 30.0%
! GATTTAGCTCATATCTAACA+AGG + chr5_3:15454621-15454640 None:intergenic 30.0%
TGAGCTAAATCCTTATCAAT+TGG - chr5_3:15454630-15454649 Msa0801490:intron 30.0%
ACTCAAATTCATGTTGAGAT+AGG - chr5_3:15454778-15454797 Msa0801490:intron 30.0%
! ATTTTCCAAAACATAACAGC+AGG - chr5_3:15455215-15455234 Msa0801490:intron 30.0%
AAAAAGGTAAACAAAGGGAA+AGG + chr5_3:15455628-15455647 None:intergenic 30.0%
CTTTAGTGTTTATAAGCTCA+TGG - chr5_3:15455757-15455776 Msa0801490:intron 30.0%
ATCTGTACTAACGTACTAAT+CGG - chr5_3:15455898-15455917 Msa0801490:intron 30.0%
TAGTCACATGCAAGTATTAT+TGG + chr5_3:15455970-15455989 None:intergenic 30.0%
TACAAAACATTGTCCTCTAA+AGG - chr5_3:15456063-15456082 Msa0801490:intron 30.0%
CATATTGATGTACTATTGCT+AGG + chr5_3:15456338-15456357 None:intergenic 30.0%
ATTCTTTCACATCTCTATCA+CGG + chr5_3:15456447-15456466 None:intergenic 30.0%
AAGAATATATTCTCTGCTGT+TGG + chr5_3:15456685-15456704 None:intergenic 30.0%
! AAACAATCAGTCTTATGAAG+AGG - chr5_3:15456925-15456944 Msa0801490:intron 30.0%
TTCAGATATTGAAGCTATGA+AGG - chr5_3:15457159-15457178 Msa0801490:intron 30.0%
AGTCAAGAGCTTAGAAAATT+CGG + chr5_3:15457339-15457358 None:intergenic 30.0%
! CTTTCTTATTTAGTGGCAAA+GGG + chr5_3:15457970-15457989 None:intergenic 30.0%
! ACTTTCTTATTTAGTGGCAA+AGG + chr5_3:15457971-15457990 None:intergenic 30.0%
TGTAGAAAACAAATGACAGA+AGG + chr5_3:15458160-15458179 None:intergenic 30.0%
! CAATTTGAAATCCGAACATA+TGG - chr5_3:15458871-15458890 Msa0801490:intron 30.0%
CCAATTTATTAATGGTCTCA+AGG + chr5_3:15458898-15458917 None:intergenic 30.0%
CCTTGAGACCATTAATAAAT+TGG - chr5_3:15458895-15458914 Msa0801490:intron 30.0%
AGAAATGTTTGAGGAAGATT+GGG + chr5_3:15459088-15459107 None:intergenic 30.0%
AAGAAATGTTTGAGGAAGAT+TGG + chr5_3:15459089-15459108 None:intergenic 30.0%
TTGGTTTCTTCAGTTTAGAA+AGG + chr5_3:15459209-15459228 None:intergenic 30.0%
!! AAATTGGCTTGATTAACTGT+TGG + chr5_3:15459228-15459247 None:intergenic 30.0%
TTGTTATCTCTGTAGGATAT+TGG - chr5_3:15459306-15459325 Msa0801490:intron 30.0%
TATTCTAGACAATATGCTGA+AGG + chr5_3:15459376-15459395 None:intergenic 30.0%
! TTCAGCATATTGTCTAGAAT+AGG - chr5_3:15459375-15459394 Msa0801490:intron 30.0%
!! TAATATCTCTGAAACTTGGA+TGG - chr5_3:15459461-15459480 Msa0801490:intron 30.0%
TGTAGCTATTATCACATCTT+GGG + chr5_3:15459592-15459611 None:intergenic 30.0%
CTAATAACCCAAAAACTATG+AGG + chr5_3:15459772-15459791 None:intergenic 30.0%
GTTCTTTATTGACAATGAAG+AGG - chr5_3:15459799-15459818 Msa0801490:five_prime_UTR 30.0%
AATGTATGGAGGAAGAAGAA+TGG + chr5_3:15450466-15450485 None:intergenic 35.0%
CAAGCTTAAGCATATAGCAA+TGG + chr5_3:15450571-15450590 None:intergenic 35.0%
AGTGAAAAGTTCAATGGTGA+TGG + chr5_3:15450594-15450613 None:intergenic 35.0%
CTGCATAACAATGCAATCTA+AGG - chr5_3:15450612-15450631 Msa0801490:three_prime_UTR 35.0%
! AGGTAAAAGTGCACAACAAA+AGG + chr5_3:15450940-15450959 None:intergenic 35.0%
! CATTTCGCCAAAAAAGCATA+AGG + chr5_3:15451268-15451287 None:intergenic 35.0%
! GGACGTAGATACCTTAATTT+TGG - chr5_3:15451384-15451403 Msa0801490:CDS 35.0%
! GTAGATACCTTAATTTTGGG+TGG - chr5_3:15451388-15451407 Msa0801490:CDS 35.0%
! GTGCCTTTAGTGCATTTTAA+AGG - chr5_3:15451428-15451447 Msa0801490:CDS 35.0%
TGATCGCTACAAAATTAAGG+GGG + chr5_3:15451570-15451589 None:intergenic 35.0%
ATTAGTACATGAACGTGACT+TGG - chr5_3:15451647-15451666 Msa0801490:intron 35.0%
ATGTATACTGAGGAAACCAT+GGG + chr5_3:15451718-15451737 None:intergenic 35.0%
AATGTATACTGAGGAAACCA+TGG + chr5_3:15451719-15451738 None:intergenic 35.0%
!! ATTTTGGACATTGTTGGTGA+AGG - chr5_3:15451827-15451846 Msa0801490:intron 35.0%
AAAGTATGGACTTACTCTCT+TGG + chr5_3:15451978-15451997 None:intergenic 35.0%
!! AATGTTAACTTGTGCTCTTG+TGG - chr5_3:15452112-15452131 Msa0801490:intron 35.0%
TCTTGTGGCATAAGTTAAGA+AGG - chr5_3:15452127-15452146 Msa0801490:intron 35.0%
ATCTTTCCTCTCACTTTCTT+TGG + chr5_3:15452215-15452234 None:intergenic 35.0%
! GAAAGTATGAGGAAAGTGAA+TGG - chr5_3:15452262-15452281 Msa0801490:intron 35.0%
! GACAATTTTCCAACTTTAGC+AGG - chr5_3:15452475-15452494 Msa0801490:CDS 35.0%
!!! CCTTTTTTTCCTGCTAAAGT+TGG + chr5_3:15452487-15452506 None:intergenic 35.0%
CCAACTTTAGCAGGAAAAAA+AGG - chr5_3:15452484-15452503 Msa0801490:CDS 35.0%
!! GAGACCATGCTTTTTAGAAA+AGG + chr5_3:15452625-15452644 None:intergenic 35.0%
! TGCTGAAAGGATTTTTGTGT+GGG - chr5_3:15452668-15452687 Msa0801490:intron 35.0%
TTCTTTCCTTTCTCATGTGT+AGG - chr5_3:15452705-15452724 Msa0801490:intron 35.0%
AAGATTCCCTTTCCATAGTT+TGG + chr5_3:15452735-15452754 None:intergenic 35.0%
AAGAGAGGAAAGAAAGTTAG+TGG + chr5_3:15452759-15452778 None:intergenic 35.0%
AATAACTAGGTCAAACACTG+TGG - chr5_3:15453066-15453085 Msa0801490:intron 35.0%
AGCATCGTATATTCCAATGT+AGG + chr5_3:15453290-15453309 None:intergenic 35.0%
AACATAGAGAGAAGTAGCTA+TGG + chr5_3:15453359-15453378 None:intergenic 35.0%
! GATAGTGGTCTCAACATAAA+AGG - chr5_3:15453550-15453569 Msa0801490:intron 35.0%
!! GGAATGGATAATTGAGTTGA+AGG - chr5_3:15453696-15453715 Msa0801490:intron 35.0%
!! GGATAATTGAGTTGAAGGAT+TGG - chr5_3:15453701-15453720 Msa0801490:intron 35.0%
! ATCTTAAGGAGTCCTTTTTG+TGG + chr5_3:15453803-15453822 None:intergenic 35.0%
GGCAAACAATTCTCATCTTA+AGG + chr5_3:15453817-15453836 None:intergenic 35.0%
AGATGAGAATTGTTTGCCAA+TGG - chr5_3:15453819-15453838 Msa0801490:intron 35.0%
! TCATTTGCAATCAACCGTTT+TGG - chr5_3:15453886-15453905 Msa0801490:intron 35.0%
TGACATTTATGGCGAATAGA+TGG + chr5_3:15454101-15454120 None:intergenic 35.0%
TTCAAATCACAATCTGAAGG+TGG - chr5_3:15454303-15454322 Msa0801490:intron 35.0%
ACATTAACAAGACGTGTTTG+TGG - chr5_3:15454330-15454349 Msa0801490:intron 35.0%
AAGTAAAACGGGTAGTAGTT+AGG + chr5_3:15454380-15454399 None:intergenic 35.0%
!! TTTAGTTTGTGGCTTCATTG+TGG - chr5_3:15454435-15454454 Msa0801490:intron 35.0%
!! TTAGTTTGTGGCTTCATTGT+GGG - chr5_3:15454436-15454455 Msa0801490:intron 35.0%
!!! CGATTTGGGTTTTAAAACAC+CGG + chr5_3:15454466-15454485 None:intergenic 35.0%
!!! CGGTGTTTTAAAACCCAAAT+CGG - chr5_3:15454464-15454483 Msa0801490:intron 35.0%
!! ATCAGATCAATCACCGATTT+GGG + chr5_3:15454480-15454499 None:intergenic 35.0%
CTCATATCTAACAAGGACAT+GGG + chr5_3:15454614-15454633 None:intergenic 35.0%
AAAGAACAAAAGAGCCAAGA+AGG + chr5_3:15454880-15454899 None:intergenic 35.0%
GTTCTATCTTATCATAGCCT+CGG - chr5_3:15454977-15454996 Msa0801490:intron 35.0%
! CTTTACCTGCTGTTATGTTT+TGG + chr5_3:15455223-15455242 None:intergenic 35.0%
ATTATGGGTCATGCTAACTA+AGG - chr5_3:15456003-15456022 Msa0801490:intron 35.0%
TTATGGGTCATGCTAACTAA+GGG - chr5_3:15456004-15456023 Msa0801490:intron 35.0%
! ATGCTAACTTGTACCTTTAG+AGG + chr5_3:15456079-15456098 None:intergenic 35.0%
GAGATATGCTTGACATTGTT+TGG - chr5_3:15456379-15456398 Msa0801490:intron 35.0%
GCTATTGGCAAATACTCAAA+TGG + chr5_3:15456489-15456508 None:intergenic 35.0%
TAGCATATGACTAAACAGCA+TGG + chr5_3:15456630-15456649 None:intergenic 35.0%
GTTGGACAAATAACATATGC+AGG + chr5_3:15456667-15456686 None:intergenic 35.0%
!!! TTGTTTTGGTATTGACAGCA+AGG - chr5_3:15456708-15456727 Msa0801490:intron 35.0%
! CATTTAAGCATATCCCCTTT+TGG - chr5_3:15456821-15456840 Msa0801490:intron 35.0%
GTGTTTAACAATGAAAAGGG+AGG - chr5_3:15457051-15457070 Msa0801490:intron 35.0%
ATGAACTAGGACTTGAAGAA+TGG - chr5_3:15457074-15457093 Msa0801490:intron 35.0%
TGAACTAGGACTTGAAGAAT+GGG - chr5_3:15457075-15457094 Msa0801490:intron 35.0%
TAGCTTCAATATCTGAACGT+TGG + chr5_3:15457156-15457175 None:intergenic 35.0%
! TTACTTGGTGAAGATGTTAC+TGG - chr5_3:15457199-15457218 Msa0801490:intron 35.0%
!! CAACGACTAAGTTGATAAGA+AGG + chr5_3:15457289-15457308 None:intergenic 35.0%
GAACAGAGAATGAAGTTGAA+CGG - chr5_3:15457575-15457594 Msa0801490:intron 35.0%
GCAATATTCAACATCGAACT+TGG + chr5_3:15457655-15457674 None:intergenic 35.0%
! TCATACGCAGTTACTGTTTT+TGG - chr5_3:15457755-15457774 Msa0801490:intron 35.0%
!!! TTACTGTTTTTGGTGAGCTA+TGG - chr5_3:15457765-15457784 Msa0801490:intron 35.0%
! TTTTGGTGAGCTATGGAAAT+TGG - chr5_3:15457772-15457791 Msa0801490:intron 35.0%
CTCTTTCTTTCTTCAGATAG+AGG + chr5_3:15457800-15457819 None:intergenic 35.0%
CTGAAGAAAGAAAGAGCAAA+TGG - chr5_3:15457804-15457823 Msa0801490:intron 35.0%
ACTGTCTCCTACAAACTATA+TGG - chr5_3:15457847-15457866 Msa0801490:intron 35.0%
! AGCTCAACCATATAGTTTGT+AGG + chr5_3:15457857-15457876 None:intergenic 35.0%
TACCTCAAAGATTCTACCAT+TGG + chr5_3:15457903-15457922 None:intergenic 35.0%
! CGTTTAAGATCGTTGTTGAT+TGG + chr5_3:15458103-15458122 None:intergenic 35.0%
! CAATGGTGAAAACAGAGTTT+TGG - chr5_3:15458276-15458295 Msa0801490:intron 35.0%
!! GTGAAAACAGAGTTTTGGTA+TGG - chr5_3:15458281-15458300 Msa0801490:intron 35.0%
! GTATCAGAAAGACCAGTTTT+TGG + chr5_3:15458386-15458405 None:intergenic 35.0%
TTTCTGATACCGAAAGAAAG+AGG - chr5_3:15458396-15458415 Msa0801490:CDS 35.0%
ATGAACCAACCTCTTTCTTT+CGG + chr5_3:15458408-15458427 None:intergenic 35.0%
TATTAGAGATGCACTTGCAA+AGG - chr5_3:15458511-15458530 Msa0801490:intron 35.0%
AGAACTATGGAACAAGTTAC+TGG - chr5_3:15458944-15458963 Msa0801490:intron 35.0%
! AACTTCATGGTCTTTTGTGA+AGG - chr5_3:15458982-15459001 Msa0801490:intron 35.0%
! ACTTCATGGTCTTTTGTGAA+GGG - chr5_3:15458983-15459002 Msa0801490:intron 35.0%
GTTTATCAGCTTCTGACATA+GGG + chr5_3:15459009-15459028 None:intergenic 35.0%
AGTTTATCAGCTTCTGACAT+AGG + chr5_3:15459010-15459029 None:intergenic 35.0%
GATGCTGCTAAAGTTCAATA+TGG - chr5_3:15459109-15459128 Msa0801490:intron 35.0%
TGCTAAAGTTCAATATGGCA+AGG - chr5_3:15459114-15459133 Msa0801490:intron 35.0%
!! AAGCCAATTTGTTGTACATG+TGG - chr5_3:15459238-15459257 Msa0801490:intron 35.0%
AATCACATTACCACTGAACT+AGG + chr5_3:15459277-15459296 None:intergenic 35.0%
! AGTTCAGTGGTAATGTGATT+TGG - chr5_3:15459277-15459296 Msa0801490:intron 35.0%
GTGTATGTTGTTATCTCTGT+AGG - chr5_3:15459299-15459318 Msa0801490:intron 35.0%
CAAAAGATGAACAAAGCAGA+TGG - chr5_3:15459513-15459532 Msa0801490:intron 35.0%
GTGTAGCTATTATCACATCT+TGG + chr5_3:15459593-15459612 None:intergenic 35.0%
! TTTGCCTCCTCATAGTTTTT+GGG - chr5_3:15459762-15459781 Msa0801490:five_prime_UTR 35.0%
ATAACCCAAAAACTATGAGG+AGG + chr5_3:15459769-15459788 None:intergenic 35.0%
!! GTTCTGGTTTCAGACTCTTT+CGG - chr5_3:15450881-15450900 Msa0801490:CDS 40.0%
!! CTTAATTTTGGGTGGCACTT+GGG - chr5_3:15451396-15451415 Msa0801490:CDS 40.0%
GATAGGAACAAAGACACGAA+AGG - chr5_3:15451517-15451536 Msa0801490:CDS 40.0%
AACACAATACTGTGACGTTG+TGG - chr5_3:15451692-15451711 Msa0801490:intron 40.0%
TTGCGCATTCAATGCCTTAA+GGG - chr5_3:15452176-15452195 Msa0801490:intron 40.0%
GTGAGAGGAAAGATTGTAAG+AGG - chr5_3:15452221-15452240 Msa0801490:intron 40.0%
! AAATCCTTTCAGCACTGGAA+TGG + chr5_3:15452662-15452681 None:intergenic 40.0%
CACAAAAATCCTTTCAGCAC+TGG + chr5_3:15452667-15452686 None:intergenic 40.0%
! GTGCTGAAAGGATTTTTGTG+TGG - chr5_3:15452667-15452686 Msa0801490:intron 40.0%
TGTGTAGGAGTTCCAAACTA+TGG - chr5_3:15452720-15452739 Msa0801490:intron 40.0%
AGGAGTTCCAAACTATGGAA+AGG - chr5_3:15452725-15452744 Msa0801490:intron 40.0%
GGAGTTCCAAACTATGGAAA+GGG - chr5_3:15452726-15452745 Msa0801490:intron 40.0%
CAGTGGAAAGATAAGAAGAG+AGG + chr5_3:15452774-15452793 None:intergenic 40.0%
! TGCAACATTTAGGGTGTGTT+TGG + chr5_3:15452799-15452818 None:intergenic 40.0%
!! TTCCTTAACTTGTGCCCTAA+GGG - chr5_3:15452866-15452885 Msa0801490:intron 40.0%
!! CATGTTAACTTGTGCCCTTA+GGG + chr5_3:15452883-15452902 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTT+AGG + chr5_3:15452884-15452903 None:intergenic 40.0%
TTGAGCAAGTCCTCTATTGT+AGG - chr5_3:15453417-15453436 Msa0801490:CDS 40.0%
CTATTTATGACTCGTGAGGT+AGG + chr5_3:15453467-15453486 None:intergenic 40.0%
CTACCTCACGAGTCATAAAT+AGG - chr5_3:15453465-15453484 Msa0801490:intron 40.0%
ATGCCTATTTATGACTCGTG+AGG + chr5_3:15453471-15453490 None:intergenic 40.0%
GAATGTCAAGTTCATGTGCT+TGG + chr5_3:15453524-15453543 None:intergenic 40.0%
AGGATTGGATCTTGATGAGT+AGG - chr5_3:15453716-15453735 Msa0801490:intron 40.0%
GGATTGGATCTTGATGAGTA+GGG - chr5_3:15453717-15453736 Msa0801490:intron 40.0%
! ATGGTTAGCCCTAAAGACAA+AGG - chr5_3:15454161-15454180 Msa0801490:intron 40.0%
! TGGTTAGCCCTAAAGACAAA+GGG - chr5_3:15454162-15454181 Msa0801490:intron 40.0%
GATTCCACCCTTTGTCTTTA+GGG + chr5_3:15454172-15454191 None:intergenic 40.0%
ACATGATAGAACGGAGCTAA+CGG + chr5_3:15454207-15454226 None:intergenic 40.0%
TGTTAGATGTGATATGGGTG+TGG - chr5_3:15454224-15454243 Msa0801490:intron 40.0%
!! AAGTAGGAGGTTGATGTGTA+AGG - chr5_3:15454268-15454287 Msa0801490:intron 40.0%
TTAACAAGACGTGTTTGTGG+TGG - chr5_3:15454333-15454352 Msa0801490:intron 40.0%
ACCATGGAGTGGAAGTAAAA+CGG + chr5_3:15454392-15454411 None:intergenic 40.0%
!! TTTTGTGAGTGCCTTTGAGA+AGG + chr5_3:15454415-15454434 None:intergenic 40.0%
! TAGTTTGTGGCTTCATTGTG+GGG - chr5_3:15454437-15454456 Msa0801490:intron 40.0%
! GATCAGATCAATCACCGATT+TGG + chr5_3:15454481-15454500 None:intergenic 40.0%
GATTGATCTGATCAAGACAC+TGG - chr5_3:15454488-15454507 Msa0801490:intron 40.0%
TGATCAAGACACTGGATTAC+TGG - chr5_3:15454496-15454515 Msa0801490:intron 40.0%
!! TGGTTGGATTGGTGAATCAT+TGG - chr5_3:15454516-15454535 Msa0801490:intron 40.0%
GCTCATATCTAACAAGGACA+TGG + chr5_3:15454615-15454634 None:intergenic 40.0%
! ATTTGGATAGGACCCTTTTG+TGG - chr5_3:15454841-15454860 Msa0801490:intron 40.0%
! TTTGGATAGGACCCTTTTGT+GGG - chr5_3:15454842-15454861 Msa0801490:intron 40.0%
!! GAGACAAAGTTTTGACGACA+CGG + chr5_3:15455011-15455030 None:intergenic 40.0%
TACTTGCATGTGACTATACG+TGG - chr5_3:15455974-15455993 Msa0801490:intron 40.0%
! TCCTCAAGCAAAGATGCTTT+TGG - chr5_3:15457013-15457032 Msa0801490:intron 40.0%
!! TCCAAAAGCATCTTTGCTTG+AGG + chr5_3:15457017-15457036 None:intergenic 40.0%
ATGAAAAGGGAGGATGAACT+AGG - chr5_3:15457061-15457080 Msa0801490:intron 40.0%
GAACGTTGGATTGCATAAGA+AGG + chr5_3:15457142-15457161 None:intergenic 40.0%
AGATGTTACTGGAGGAACTA+AGG - chr5_3:15457210-15457229 Msa0801490:intron 40.0%
GATGTTACTGGAGGAACTAA+GGG - chr5_3:15457211-15457230 Msa0801490:intron 40.0%
AATGCCATCACAAACTTGTC+AGG - chr5_3:15457259-15457278 Msa0801490:intron 40.0%
CATACCTGACAAGTTTGTGA+TGG + chr5_3:15457266-15457285 None:intergenic 40.0%
TTGACTACGAGTGTCTAATG+TGG - chr5_3:15457485-15457504 Msa0801490:intron 40.0%
!! TTGGCATTGTTTTGCTTAGC+AGG + chr5_3:15457884-15457903 None:intergenic 40.0%
GCTAAGCAAAACAATGCCAA+TGG - chr5_3:15457884-15457903 Msa0801490:intron 40.0%
TGCCAATGGTAGAATCTTTG+AGG - chr5_3:15457898-15457917 Msa0801490:intron 40.0%
TAAGCATAGAGTCCAACTTC+TGG + chr5_3:15458060-15458079 None:intergenic 40.0%
AGCAACATATTAGGCTGCTA+AGG - chr5_3:15458209-15458228 Msa0801490:intron 40.0%
GCAACATATTAGGCTGCTAA+GGG - chr5_3:15458210-15458229 Msa0801490:intron 40.0%
GCTAAGGGCAACATCTTATT+TGG - chr5_3:15458225-15458244 Msa0801490:intron 40.0%
ACAGGATGCACTTGATTCAA+TGG - chr5_3:15458259-15458278 Msa0801490:intron 40.0%
!! AACAGAGTTTTGGTATGGTG+AGG - chr5_3:15458286-15458305 Msa0801490:intron 40.0%
!! ACAGAGTTTTGGTATGGTGA+GGG - chr5_3:15458287-15458306 Msa0801490:intron 40.0%
!!! GTTTTTGGTACTTGAGGTGA+TGG + chr5_3:15458371-15458390 None:intergenic 40.0%
TCACCTCAAGTACCAAAAAC+TGG - chr5_3:15458371-15458390 Msa0801490:intron 40.0%
!!! AGACCAGTTTTTGGTACTTG+AGG + chr5_3:15458377-15458396 None:intergenic 40.0%
TGATACCGAAAGAAAGAGGT+TGG - chr5_3:15458400-15458419 Msa0801490:CDS 40.0%
! AAGAAAGAGGTTGGTTCATC+AGG - chr5_3:15458409-15458428 Msa0801490:CDS 40.0%
! AGAAAGAGGTTGGTTCATCA+GGG - chr5_3:15458410-15458429 Msa0801490:CDS 40.0%
ATTTGGCAGCCTTGAATACT+TGG + chr5_3:15458448-15458467 None:intergenic 40.0%
AGTGCATCTCTAATAACCGT+TGG + chr5_3:15458506-15458525 None:intergenic 40.0%
TTGACAGCTGAATCAACTTC+TGG - chr5_3:15458827-15458846 Msa0801490:intron 40.0%
CTCGTTGAAAGAGAGAACTA+TGG - chr5_3:15458931-15458950 Msa0801490:intron 40.0%
ACAAGTTACTGGCAAATCAC+CGG - chr5_3:15458955-15458974 Msa0801490:intron 40.0%
AAAGACCATGAAGTTCGAAC+CGG + chr5_3:15458977-15458996 None:intergenic 40.0%
!! GCTGTAAAAGTGTTTCAGCA+CGG + chr5_3:15459048-15459067 None:intergenic 40.0%
GCAGCATCAAGAAATGTTTG+AGG + chr5_3:15459097-15459116 None:intergenic 40.0%
TAGAAAGGCTCGAATGTAGA+TGG + chr5_3:15459194-15459213 None:intergenic 40.0%
TGGCCACATGTACAACAAAT+TGG + chr5_3:15459244-15459263 None:intergenic 40.0%
TGTACATGTGGCCAAAAAGT+TGG - chr5_3:15459250-15459269 Msa0801490:intron 40.0%
! CTGAACTAGGACCAACTTTT+TGG + chr5_3:15459264-15459283 None:intergenic 40.0%
! AAAAGTTGGTCCTAGTTCAG+TGG - chr5_3:15459264-15459283 Msa0801490:intron 40.0%
GGATATTGGACATTCCATTC+TGG - chr5_3:15459320-15459339 Msa0801490:intron 40.0%
GGCTAAATTTCCAAGAACTC+TGG + chr5_3:15459355-15459374 None:intergenic 40.0%
!! TATCTCTGAAACTTGGATGG+TGG - chr5_3:15459464-15459483 Msa0801490:intron 40.0%
TGATAATAGCTACACCAAGC+AGG - chr5_3:15459598-15459617 Msa0801490:intron 40.0%
! GTTTGCCTCCTCATAGTTTT+TGG - chr5_3:15459761-15459780 Msa0801490:five_prime_UTR 40.0%
ATGAGACTTTGGGCTATCCT+TGG - chr5_3:15451347-15451366 Msa0801490:CDS 45.0%
CCAAGTGCCACCCAAAATTA+AGG + chr5_3:15451398-15451417 None:intergenic 45.0%
!! CCTTAATTTTGGGTGGCACT+TGG - chr5_3:15451395-15451414 Msa0801490:CDS 45.0%
!! AATGCACTAAAGGCACCGAA+AGG + chr5_3:15451424-15451443 None:intergenic 45.0%
! CACTTCGATGTCTTTGGCTT+CGG + chr5_3:15451545-15451564 None:intergenic 45.0%
CTTGCGCATTCAATGCCTTA+AGG - chr5_3:15452175-15452194 Msa0801490:intron 45.0%
! CAATGCCTTAAGGGTGTGTT+TGG - chr5_3:15452185-15452204 Msa0801490:intron 45.0%
GTGATCCAAACACACCCTTA+AGG + chr5_3:15452193-15452212 None:intergenic 45.0%
GGATCACCAAAGAAAGTGAG+AGG - chr5_3:15452206-15452225 Msa0801490:intron 45.0%
TGGAATGGACGGAAACATGA+GGG + chr5_3:15452647-15452666 None:intergenic 45.0%
GGAACTCCTACACATGAGAA+AGG + chr5_3:15452714-15452733 None:intergenic 45.0%
! TTAGGGTGTGTTTGGTTCAG+TGG + chr5_3:15452791-15452810 None:intergenic 45.0%
!! GTTCCTTAACTTGTGCCCTA+AGG - chr5_3:15452865-15452884 Msa0801490:intron 45.0%
GAGATTTGGCATGCCTACAT+TGG - chr5_3:15453274-15453293 Msa0801490:CDS 45.0%
!! TGCCAATGGATTGTAGCTAG+TGG - chr5_3:15453833-15453852 Msa0801490:intron 45.0%
GACCACTAGCTACAATCCAT+TGG + chr5_3:15453838-15453857 None:intergenic 45.0%
TTAGCCCTAAAGACAAAGGG+TGG - chr5_3:15454165-15454184 Msa0801490:intron 45.0%
GGATTCCACCCTTTGTCTTT+AGG + chr5_3:15454173-15454192 None:intergenic 45.0%
!! GAGCTAACGGTTCAAGTTGT+GGG + chr5_3:15454194-15454213 None:intergenic 45.0%
CCATGGAGTGGAAGTAAAAC+GGG + chr5_3:15454391-15454410 None:intergenic 45.0%
CAAGACACTGGATTACTGGT+TGG - chr5_3:15454500-15454519 Msa0801490:intron 45.0%
! CACTGGATTACTGGTTGGAT+TGG - chr5_3:15454505-15454524 Msa0801490:intron 45.0%
GAAGCGTAAGATAGTTGACC+TGG - chr5_3:15454587-15454606 Msa0801490:intron 45.0%
! TTGGATAGGACCCTTTTGTG+GGG - chr5_3:15454843-15454862 Msa0801490:intron 45.0%
GAGGAAAGCAGAACAAGTAG+AGG - chr5_3:15456944-15456963 Msa0801490:intron 45.0%
AGCAGAACAAGTAGAGGAGA+TGG - chr5_3:15456950-15456969 Msa0801490:intron 45.0%
AGAACAAGTAGAGGAGATGG+AGG - chr5_3:15456953-15456972 Msa0801490:intron 45.0%
CTTGGTGAAGATGTTACTGG+AGG - chr5_3:15457202-15457221 Msa0801490:intron 45.0%
!! TAAGGGCATCACTACAGCTT+TGG - chr5_3:15457228-15457247 Msa0801490:intron 45.0%
GAGCAAATGGCGAAGAGAAA+TGG - chr5_3:15457817-15457836 Msa0801490:intron 45.0%
AATGGCGAAGAGAAATGGAC+TGG - chr5_3:15457822-15457841 Msa0801490:intron 45.0%
TGAATGTCTGCACGAGCTTT+AGG + chr5_3:15458019-15458038 None:intergenic 45.0%
CACACTCATGTCTTTCCCTT+CGG + chr5_3:15458324-15458343 None:intergenic 45.0%
AAGGGAAAGACATGAGTGTG+CGG - chr5_3:15458324-15458343 Msa0801490:intron 45.0%
GTGTGCGGCATAGTAAAAGA+TGG - chr5_3:15458339-15458358 Msa0801490:intron 45.0%
TGCGGCATAGTAAAAGATGG+TGG - chr5_3:15458342-15458361 Msa0801490:intron 45.0%
TCTCTAATAACCGTTGGCAC+AGG + chr5_3:15458500-15458519 None:intergenic 45.0%
GAATGCTCTATGTTGCAGTC+TGG - chr5_3:15458770-15458789 Msa0801490:intron 45.0%
CTCTATGTTGCAGTCTGGAA+AGG - chr5_3:15458775-15458794 Msa0801490:intron 45.0%
!! AATCACCGGTTCGAACTTCA+TGG - chr5_3:15458969-15458988 Msa0801490:intron 45.0%
! TCTGGAATACGCTTCCAGAA+TGG + chr5_3:15459337-15459356 None:intergenic 45.0%
GAAGCGTATTCCAGAGTTCT+TGG - chr5_3:15459342-15459361 Msa0801490:intron 45.0%
TGTCTGGTGCATTAGTAGAG+AGG - chr5_3:15459626-15459645 Msa0801490:intron 45.0%
!!! ATTTTTTCTTTTAAATTTTT+TGG - chr5_3:15451605-15451624 Msa0801490:intron 5.0%
!! TTTAAATAATATCAATTAAT+TGG - chr5_3:15456536-15456555 Msa0801490:intron 5.0%
!! TTAAATAATATCAATTAATT+GGG - chr5_3:15456537-15456556 Msa0801490:intron 5.0%
CTGGAATGGACGGAAACATG+AGG + chr5_3:15452648-15452667 None:intergenic 50.0%
! CCTTTCAGCACTGGAATGGA+CGG + chr5_3:15452658-15452677 None:intergenic 50.0%
TGCCCTTAGGGCACAAGTTA+AGG + chr5_3:15452871-15452890 None:intergenic 50.0%
TAGGTCAAACACTGTGGTCG+TGG - chr5_3:15453072-15453091 Msa0801490:intron 50.0%
!! GGAGCTAACGGTTCAAGTTG+TGG + chr5_3:15454195-15454214 None:intergenic 50.0%
! CCCGTTTTACTTCCACTCCA+TGG - chr5_3:15454388-15454407 Msa0801490:intron 50.0%
! CTTTGAGAAGGACCATGGAG+TGG + chr5_3:15454403-15454422 None:intergenic 50.0%
CACTCCATGGTCCTTCTCAA+AGG - chr5_3:15454401-15454420 Msa0801490:intron 50.0%
! AGTGCCTTTGAGAAGGACCA+TGG + chr5_3:15454408-15454427 None:intergenic 50.0%
TCTAACAAGGACATGGGACC+AGG + chr5_3:15454608-15454627 None:intergenic 50.0%
GAGAAGAGAGCCCCACAAAA+GGG + chr5_3:15454856-15454875 None:intergenic 50.0%
AGAGAAGAGAGCCCCACAAA+AGG + chr5_3:15454857-15454876 None:intergenic 50.0%
TCTTCCAGCACTCCAGAAGT+TGG - chr5_3:15458045-15458064 Msa0801490:intron 50.0%
!! GAGTTTTGGTATGGTGAGGG+AGG - chr5_3:15458290-15458309 Msa0801490:intron 50.0%
! GAGGTTGGTTCATCAGGGAA+AGG - chr5_3:15458415-15458434 Msa0801490:CDS 50.0%
! GTTGGTTCATCAGGGAAAGG+TGG - chr5_3:15458418-15458437 Msa0801490:CDS 50.0%
GGTGGTACGCCAAGTATTCA+AGG - chr5_3:15458436-15458455 Msa0801490:exon 50.0%
GCTTGAAATGCCTGTGCCAA+CGG - chr5_3:15458487-15458506 Msa0801490:five_prime_UTR 50.0%
CAGTCTGGAAAGGCAAACCT+TGG - chr5_3:15458785-15458804 Msa0801490:intron 50.0%
CCTTGTGCAGTTCTTGTCCA+AGG + chr5_3:15458805-15458824 None:intergenic 50.0%
CCTTGGACAAGAACTGCACA+AGG - chr5_3:15458802-15458821 Msa0801490:intron 50.0%
GGTCTCAAGGGCCATATGTT+CGG + chr5_3:15458885-15458904 None:intergenic 50.0%
AACTCACTAAGTTGCTCCCC+TGG - chr5_3:15459432-15459451 Msa0801490:intron 50.0%
!! GGGGAGCACTTCGATGTCTT+TGG + chr5_3:15451551-15451570 None:intergenic 55.0%
TACTGTGACGTTGTGGCCCA+TGG - chr5_3:15451699-15451718 Msa0801490:intron 55.0%
!! GACTAGCTTGCTGCAGCAGA+GGG - chr5_3:15451926-15451945 Msa0801490:CDS 55.0%
! CCGTCCATTCCAGTGCTGAA+AGG - chr5_3:15452655-15452674 Msa0801490:intron 55.0%
GTGAGGTAGGACTGTAGGAC+AGG + chr5_3:15453454-15453473 None:intergenic 55.0%
GACTCGTGAGGTAGGACTGT+AGG + chr5_3:15453459-15453478 None:intergenic 55.0%
TGGCTTCATTGTGGGGTAGC+CGG - chr5_3:15454444-15454463 Msa0801490:intron 55.0%
GGGCTCTCTTCTCTCCTTCT+TGG - chr5_3:15454863-15454882 Msa0801490:intron 55.0%
ACGACACGGAGAAACTTCCG+AGG + chr5_3:15454997-15455016 None:intergenic 55.0%
!! GAGTCCAACTTCTGGAGTGC+TGG + chr5_3:15458052-15458071 None:intergenic 55.0%
CACCAAGCAGGAGTAGTGTC+TGG - chr5_3:15459610-15459629 Msa0801490:intron 55.0%
CACCAGACACTACTCCTGCT+TGG + chr5_3:15459615-15459634 None:intergenic 55.0%
GGTGGCACTTGGGTGCCTTT+CGG - chr5_3:15451406-15451425 Msa0801490:CDS 60.0%
!! GGACTAGCTTGCTGCAGCAG+AGG - chr5_3:15451925-15451944 Msa0801490:CDS 60.0%
GGTATGGTGAGGGAGGAAGC+AGG - chr5_3:15458297-15458316 Msa0801490:intron 60.0%
AGGGAGGAAGCAGGACCGAA+GGG - chr5_3:15458306-15458325 Msa0801490:intron 60.0%
GAGGGAGGAAGCAGGACCGA+AGG - chr5_3:15458305-15458324 Msa0801490:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 15450395 15459965 15450395 ID=Msa0801490;Name=Msa0801490
chr5_3 mRNA 15450395 15459965 15450395 ID=Msa0801490-mRNA-1;Parent=Msa0801490;Name=Msa0801490-mRNA-1;_AED=0.07;_eAED=0.07;_QI=297|1|1|1|0.71|0.75|8|282|559
chr5_3 exon 15450395 15451039 15450395 ID=Msa0801490-mRNA-1:exon:6407;Parent=Msa0801490-mRNA-1
chr5_3 exon 15451225 15451572 15451225 ID=Msa0801490-mRNA-1:exon:6406;Parent=Msa0801490-mRNA-1
chr5_3 exon 15451828 15452097 15451828 ID=Msa0801490-mRNA-1:exon:6405;Parent=Msa0801490-mRNA-1
chr5_3 exon 15452279 15452353 15452279 ID=Msa0801490-mRNA-1:exon:6404;Parent=Msa0801490-mRNA-1
chr5_3 exon 15452441 15452595 15452441 ID=Msa0801490-mRNA-1:exon:6403;Parent=Msa0801490-mRNA-1
chr5_3 exon 15453080 15453472 15453080 ID=Msa0801490-mRNA-1:exon:6402;Parent=Msa0801490-mRNA-1
chr5_3 exon 15458378 15458511 15458378 ID=Msa0801490-mRNA-1:exon:6401;Parent=Msa0801490-mRNA-1
chr5_3 exon 15459727 15459965 15459727 ID=Msa0801490-mRNA-1:exon:6400;Parent=Msa0801490-mRNA-1
chr5_3 five_prime_UTR 15459727 15459965 15459727 ID=Msa0801490-mRNA-1:five_prime_utr;Parent=Msa0801490-mRNA-1
chr5_3 five_prime_UTR 15458454 15458511 15458454 ID=Msa0801490-mRNA-1:five_prime_utr;Parent=Msa0801490-mRNA-1
chr5_3 CDS 15458378 15458453 15458378 ID=Msa0801490-mRNA-1:cds;Parent=Msa0801490-mRNA-1
chr5_3 CDS 15453080 15453472 15453080 ID=Msa0801490-mRNA-1:cds;Parent=Msa0801490-mRNA-1
chr5_3 CDS 15452441 15452595 15452441 ID=Msa0801490-mRNA-1:cds;Parent=Msa0801490-mRNA-1
chr5_3 CDS 15452279 15452353 15452279 ID=Msa0801490-mRNA-1:cds;Parent=Msa0801490-mRNA-1
chr5_3 CDS 15451828 15452097 15451828 ID=Msa0801490-mRNA-1:cds;Parent=Msa0801490-mRNA-1
chr5_3 CDS 15451225 15451572 15451225 ID=Msa0801490-mRNA-1:cds;Parent=Msa0801490-mRNA-1
chr5_3 CDS 15450677 15451039 15450677 ID=Msa0801490-mRNA-1:cds;Parent=Msa0801490-mRNA-1
chr5_3 three_prime_UTR 15450395 15450676 15450395 ID=Msa0801490-mRNA-1:three_prime_utr;Parent=Msa0801490-mRNA-1
Gene Sequence

>Msa0801490

ATGTTTAGAATGAAGAAAGGACTAGCTTGCTGCAGCAGAGGGAAGAAAATCAGCATTGATTTTCATGACCAAGAGAGAATTATGACATATAATGGTCTTGAGAGTTGCATTCTAAACAATCAGTCTTATGAAGAGGAAAGCAGAACAAGTAGAGGAGATGGAGGCATAACTGATTCATTTGACGACGATGATTCAAGCTGTTCCTCAAGCAAAGATGCTTTTGGATCATTCTCTTCAAAGTGTTTAACAATGAAAAGGGAGGATGAACTAGGACTTGAAGAATGGGAACTCTCAGAAAGTCCTCAACATTTTTATGTCAAAGAGAAACCTTCTTATGCAATCCAACGTTCAGATATTGAAGCTATGAAGGAAAAATTTTCAAAGCTCTTACTTGGTGAAGATGTTACTGGAGGAACTAAGGGCATCACTACAGCTTTGGCACTGTCTAATGCCATCACAAACTTGTCAGTTACTGTTTTTGGTGAGCTATGGAAATTGGAACCTCTATCTGAAGAAAGAAAGAGCAAATGGCGAAGAGAAATGGACTGGTTACTGTCTCCTACAAACTATATGGTTGAGCTAGTTCCTGCTAAGCAAAACAATGCCAATGGTAGAATCTTTGAGATAATGACGCCTAAAGCTCGTGCAGACATTCACATGAATCTTCCAGCACTCCAGAAGTTGGACTCTATGCTTATCGATGCACTTGATTCAATGGTGAAAACAGAGTTTTGGTATGGTGAGGGAGGAAGCAGGACCGAAGGGAAAGACATGAGTGTGCGGCATAGTAAAAGATGGTGGCTTCCATCACCTCAAGTACCAAAAACTGGTCTTTCTGATACCGAAAGAAAGAGGTTGGTTCATCAGGGAAAGGTGGTACGCCAAGTATTCAAGGCTGCCAAATCTATCAATGAAAATGTGTTGCTTGAAATGCCTGTGCCAACGGTTATTAGAGATGCACTTGCAAAGTCTGGAAAGGCAAACCTTGGACAAGAACTGCACAAGGTTTTGACAGCTGAATCAACTTCTGGAGAAGATATGATTAAATCTCTCAATTTGAAATCCGAACATATGGCCCTTGAGACCATTAATAAATTGGAAGCTGTTATATTCTCGTTGAAAGAGAGAACTATGGAACAAGTTACTGGCAAATCACCGGTTCGAACTTCATGGTCTTTTGTGAAGGGCCCTATGTCAGAAGCTGATAAACTTGAGTTATTATTGGACCGTGCTGAAACACTTTTACAGCTTCTTAAAATCAGATATCCCAATCTTCCTCAAACATTTCTTGATGCTGCTAAAGTTCAATATGGCAAGGATATTGGACATTCCATTCTGGAAGCGTATTCCAGAGTTCTTGGAAATTTAGCCTTCAGCATATTGTCTAGAATAGGAGATATATTACAAGAGGATTGTCTAAGCAGTTCTAACTCACTAAGTTGCTCCCCTGGAATAAATAATATCTCTGAAACTTGGATGGTGGATTCACATATTAAGCAATCCTTACTTCAAAAGATGAACAAAGCAGATGGACAATGTTGTGACAGTACTTCAGATTTAGAGCTCAAATCATTTGATGCTAAATCCCAAGATGTGATAATAGCTACACCAAGCAGGAGTAGTGTCTGGTGCATTAGTAGAGAGGCTTGTACGAGTGTGTCTACTCAAAATTCGCCATAG
Protein sequence

>Msa0801490

MFRMKKGLACCSRGKKISIDFHDQERIMTYNGLESCILNNQSYEEESRTSRGDGGITDSFDDDDSSCSSSKDAFGSFSSKCLTMKREDELGLEEWELSESPQHFYVKEKPSYAIQRSDIEAMKEKFSKLLLGEDVTGGTKGITTALALSNAITNLSVTVFGELWKLEPLSEERKSKWRREMDWLLSPTNYMVELVPAKQNNANGRIFEIMTPKARADIHMNLPALQKLDSMLIDALDSMVKTEFWYGEGGSRTEGKDMSVRHSKRWWLPSPQVPKTGLSDTERKRLVHQGKVVRQVFKAAKSINENVLLEMPVPTVIRDALAKSGKANLGQELHKVLTAESTSGEDMIKSLNLKSEHMALETINKLEAVIFSLKERTMEQVTGKSPVRTSWSFVKGPMSEADKLELLLDRAETLLQLLKIRYPNLPQTFLDAAKVQYGKDIGHSILEAYSRVLGNLAFSILSRIGDILQEDCLSSSNSLSCSPGINNISETWMVDSHIKQSLLQKMNKADGQCCDSTSDLELKSFDAKSQDVIIATPSRSSVWCISREACTSVSTQNSP*