AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0703760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0703760 MtrunA17_Chr8g0382151 94.118 153 9 0 1 153 1 153 2.38e-88 255
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0703760 AT5G65220.1 60.510 157 57 2 1 152 1 157 5.30e-56 174

Find 49 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTCACTGCCTTCAAATT+AGG 0.189849 4_4:+75793138 Msa0703760:three_prime_UTR
AATGCCATTGAAGGAGGTTT+TGG 0.286863 4_4:-75790210 None:intergenic
CTCCATCTTTAGTGAAGCTT+CGG 0.343778 4_4:+75792870 Msa0703760:CDS
AGGATGAAGTGAAGTAAGAT+AGG 0.359503 4_4:+75790043 Msa0703760:five_prime_UTR
CGAAGAGGTTGTTGACCTTA+AGG 0.368840 4_4:+75790361 Msa0703760:CDS
AGAGAGATCGAGGAGGGTAT+TGG 0.373075 4_4:+75792788 Msa0703760:CDS
GAAGAGGTTGTTGACCTTAA+GGG 0.407443 4_4:+75790362 Msa0703760:CDS
AACCTCTTCGTTGATTTGTT+CGG 0.413592 4_4:-75790348 None:intergenic
TCCATCTTTAGTGAAGCTTC+GGG 0.422468 4_4:+75792871 Msa0703760:CDS
TAACCATGTCTCTATTCTTA+CGG 0.436101 4_4:-75793106 None:intergenic
AAAATGATTACCTAATTTGA+AGG 0.439015 4_4:-75793148 None:intergenic
GCTGGAATTGTGCACGTGTT+TGG 0.452104 4_4:-75790245 None:intergenic
AGAAGCCGCTGAAGCTGAAA+AGG 0.454847 4_4:+75792910 Msa0703760:CDS
GCTGAAAAGGCTGCATGAGC+TGG 0.463787 4_4:+75792923 Msa0703760:exon
AAGAGGAGTTGCGCTCATAA+AGG 0.464581 4_4:+75790023 Msa0703760:five_prime_UTR
TCGAGGAGGGTATTGGTAAG+AGG 0.464624 4_4:+75792795 Msa0703760:CDS
TCCCGAAGCTTCACTAAAGA+TGG 0.465433 4_4:-75792872 None:intergenic
CCTATGTTCTTCCTGTCATA+CGG 0.469440 4_4:+75793059 Msa0703760:three_prime_UTR
GAAGCGGTGTGTTTCGTCGC+TGG 0.470689 4_4:-75790263 None:intergenic
CTCTTCGTTGATTTGTTCGG+TGG 0.475609 4_4:-75790345 None:intergenic
TTTAGTGAAGCTTCGGGAGG+AGG 0.477310 4_4:+75792877 Msa0703760:CDS
CAATCCAAAACCTCCTTCAA+TGG 0.490843 4_4:+75790206 Msa0703760:CDS
TTCGGTCTCAGTTGTGATGA+TGG 0.497091 4_4:+75790283 Msa0703760:CDS
GCATGAGCAACTCTCCCTTA+AGG 0.500570 4_4:-75790376 None:intergenic
AAGTGAAGTAAGATAGGGTG+TGG 0.502314 4_4:+75790049 Msa0703760:five_prime_UTR
ACGCATGCGACGGAAATCAC+TGG 0.508419 4_4:-75790435 None:intergenic
AGAAGAAGAAGGTGAAGTAA+CGG 0.515793 4_4:-75790153 None:intergenic
GGATGAAGTGAAGTAAGATA+GGG 0.523185 4_4:+75790044 Msa0703760:five_prime_UTR
CATTACGAGCGGATTTCTGA+AGG 0.525516 4_4:-75790403 None:intergenic
AGCGACGAAACACACCGCTT+CGG 0.532669 4_4:+75790265 Msa0703760:CDS
TCGCTTGCTTACTGTAAAGC+GGG 0.534202 4_4:+75792763 Msa0703760:CDS
ACGTAGACGAATGCCATTGA+AGG 0.534298 4_4:-75790219 None:intergenic
TTTCCGTCGCATGCGTAAGA+CGG 0.562303 4_4:+75790442 Msa0703760:CDS
CTCGCTTGCTTACTGTAAAG+CGG 0.564676 4_4:+75792762 Msa0703760:CDS
AGCTTCACTAAAGATGGAGG+TGG 0.573712 4_4:-75792866 None:intergenic
CCGTATGACAGGAAGAACAT+AGG 0.601321 4_4:-75793059 None:intergenic
TAGACGAATGCCATTGAAGG+AGG 0.601615 4_4:-75790216 None:intergenic
ATCTTTAGTGAAGCTTCGGG+AGG 0.606878 4_4:+75792874 Msa0703760:CDS
CGGGAAAGAGAGATCGAGGA+GGG 0.618037 4_4:+75792782 Msa0703760:CDS
CGAAGCTTCACTAAAGATGG+AGG 0.634671 4_4:-75792869 None:intergenic
CACCGAACAAATCAACGAAG+AGG 0.638523 4_4:+75790346 Msa0703760:CDS
AAAGCGGGAAAGAGAGATCG+AGG 0.640382 4_4:+75792778 Msa0703760:CDS
AGATAAAACATAAGAGAGCG+CGG 0.644926 4_4:+75790110 Msa0703760:five_prime_UTR
ATACCGTCTTACGCATGCGA+CGG 0.651580 4_4:-75790445 None:intergenic
GGACTTAAACTCATTACGAG+CGG 0.659914 4_4:-75790414 None:intergenic
GCGGGAAAGAGAGATCGAGG+AGG 0.693334 4_4:+75792781 Msa0703760:CDS
CATCACAACTGAGACCGAAG+CGG 0.693580 4_4:-75790279 None:intergenic
TAACCGTAAGAATAGAGACA+TGG 0.704669 4_4:+75793103 Msa0703760:three_prime_UTR
AAGAAGGTGAAGTAACGGAG+AGG 0.716426 4_4:-75790148 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGCTTAATTAAATTTTT+AGG + chr4_4:75790529-75790548 Msa0703760:intron 10.0%
!! ATTAAAACTAAAAATAAATG+GGG - chr4_4:75792640-75792659 None:intergenic 10.0%
!! AAAAAAGCAATATAATGAAA+AGG - chr4_4:75791857-75791876 None:intergenic 15.0%
!!! AATTTTTTTTTTTTCCGTTT+CGG - chr4_4:75792129-75792148 None:intergenic 15.0%
!! AAACGGAAAAAAAAAAAATT+AGG + chr4_4:75792129-75792148 Msa0703760:intron 15.0%
!! TTAAAACTAAAAATAAATGG+GGG - chr4_4:75792639-75792658 None:intergenic 15.0%
!!! ATCTGAAGTTATTATTATTA+GGG - chr4_4:75792667-75792686 None:intergenic 15.0%
!! TTAATACATTAGTAGAGTTA+GGG + chr4_4:75790602-75790621 Msa0703760:intron 20.0%
!! ACAATATTCAAAATTGTCAA+GGG + chr4_4:75790892-75790911 Msa0703760:intron 20.0%
!!! TCTTAAGTTTGAATCTTTTA+TGG + chr4_4:75791386-75791405 Msa0703760:intron 20.0%
!! ATAATCTAATCCAATGTAAA+CGG + chr4_4:75791520-75791539 Msa0703760:intron 20.0%
!!! TATCTTTTACTTTAGTTGTT+TGG + chr4_4:75791693-75791712 Msa0703760:intron 20.0%
!!! ACAACAATTGAATTTTATTG+TGG - chr4_4:75791937-75791956 None:intergenic 20.0%
!! ACAATAAAATTCAATTGTTG+TGG + chr4_4:75791936-75791955 Msa0703760:intron 20.0%
!! ATCAGAACTGAAATTTAAAT+TGG + chr4_4:75792018-75792037 Msa0703760:intron 20.0%
!!! TCAATTCAATTTTTATTGGT+GGG - chr4_4:75792476-75792495 None:intergenic 20.0%
!!! CATCTGAAGTTATTATTATT+AGG - chr4_4:75792668-75792687 None:intergenic 20.0%
!!! AGTCATTGTTTTTAATGTTT+TGG + chr4_4:75792993-75793012 Msa0703760:three_prime_UTR 20.0%
!! AAAATGATTACCTAATTTGA+AGG - chr4_4:75793151-75793170 None:intergenic 20.0%
! CTCTACTAATGTATTAAGAT+TGG - chr4_4:75790599-75790618 None:intergenic 25.0%
! CTTAATACATTAGTAGAGTT+AGG + chr4_4:75790601-75790620 Msa0703760:intron 25.0%
! TAATACATTAGTAGAGTTAG+GGG + chr4_4:75790603-75790622 Msa0703760:intron 25.0%
! TGTGAAATTAGGAATGAATA+GGG + chr4_4:75790636-75790655 Msa0703760:intron 25.0%
! TTGTAATTGTCATTGTTCTA+TGG + chr4_4:75790722-75790741 Msa0703760:intron 25.0%
! CACAATATTCAAAATTGTCA+AGG + chr4_4:75790891-75790910 Msa0703760:intron 25.0%
! CAATATTCAAAATTGTCAAG+GGG + chr4_4:75790893-75790912 Msa0703760:intron 25.0%
! GAAATATTGCTATGTTAGAA+TGG + chr4_4:75790921-75790940 Msa0703760:intron 25.0%
! ACACCAAAAATAATGCAAAT+GGG - chr4_4:75790987-75791006 None:intergenic 25.0%
! TGTCTATTATACCAAACTTA+GGG + chr4_4:75791004-75791023 Msa0703760:intron 25.0%
!! TTCAAATTTTACCCTAAGTT+TGG - chr4_4:75791018-75791037 None:intergenic 25.0%
! AAACTTAGGGTAAAATTTGA+AGG + chr4_4:75791017-75791036 Msa0703760:intron 25.0%
! GAAATGAACATTGAAATGAA+AGG + chr4_4:75791068-75791087 Msa0703760:intron 25.0%
!! TATTAGCACTTGTTAACAAA+TGG - chr4_4:75791469-75791488 None:intergenic 25.0%
!! TTTCAGTTTTCTTTCTTCTT+TGG - chr4_4:75791605-75791624 None:intergenic 25.0%
! AAGAAGAAAGAAAACTGAAA+AGG + chr4_4:75791605-75791624 Msa0703760:intron 25.0%
! ATACAAATGAGTGTAAGAAT+AGG - chr4_4:75791771-75791790 None:intergenic 25.0%
! AACATCCATGAAAATAGAAA+AGG - chr4_4:75791962-75791981 None:intergenic 25.0%
! AACTCTGATAAAATGATGAT+GGG - chr4_4:75792448-75792467 None:intergenic 25.0%
!! CTCAATTCAATTTTTATTGG+TGG - chr4_4:75792477-75792496 None:intergenic 25.0%
! CACCAATAAAAATTGAATTG+AGG + chr4_4:75792475-75792494 Msa0703760:intron 25.0%
!! CTCCTCAATTCAATTTTTAT+TGG - chr4_4:75792480-75792499 None:intergenic 25.0%
! AAAAATTGAATTGAGGAGAA+TGG + chr4_4:75792482-75792501 Msa0703760:intron 25.0%
! AAAATTGAATTGAGGAGAAT+GGG + chr4_4:75792483-75792502 Msa0703760:intron 25.0%
!! TTTAGAATGTTTAGATTCCA+TGG + chr4_4:75792549-75792568 Msa0703760:intron 25.0%
! AAATGCACACAATAGAAAAA+GGG + chr4_4:75792582-75792601 Msa0703760:intron 25.0%
!!! CATTGTTTTTAATGTTTTGG+TGG + chr4_4:75792996-75793015 Msa0703760:three_prime_UTR 25.0%
!!! GAAAGTTTTGAAGAAGAAGA+AGG - chr4_4:75790167-75790186 None:intergenic 30.0%
!!! TTGTAATGGTTTTGGAAGAA+AGG - chr4_4:75790189-75790208 None:intergenic 30.0%
!! GTTTTGGATTGTAATGGTTT+TGG - chr4_4:75790197-75790216 None:intergenic 30.0%
CTGTGAAATTAGGAATGAAT+AGG + chr4_4:75790635-75790654 Msa0703760:intron 30.0%
!!! AGTCTTTGGTTTTGTGTATT+TGG - chr4_4:75790820-75790839 None:intergenic 30.0%
GTGTGTAATATGTAAGTCAT+AGG - chr4_4:75790874-75790893 None:intergenic 30.0%
TTGCTATGTTAGAATGGAAA+TGG + chr4_4:75790927-75790946 Msa0703760:intron 30.0%
! CATCCCATTTGCATTATTTT+TGG + chr4_4:75790981-75791000 Msa0703760:intron 30.0%
GACACCAAAAATAATGCAAA+TGG - chr4_4:75790988-75791007 None:intergenic 30.0%
GTGTCTATTATACCAAACTT+AGG + chr4_4:75791003-75791022 Msa0703760:intron 30.0%
TAGTTGTTACTCATGTATTG+CGG + chr4_4:75791153-75791172 Msa0703760:intron 30.0%
!!! ACTTTTCAGGTATGGTATTT+CGG - chr4_4:75791227-75791246 None:intergenic 30.0%
ATTGAAATTGAACTGAAACC+AGG - chr4_4:75791301-75791320 None:intergenic 30.0%
ATTTCAATCAACCAATACGA+TGG + chr4_4:75791313-75791332 Msa0703760:intron 30.0%
ACATAGATTAAATCCATTGC+CGG + chr4_4:75791362-75791381 Msa0703760:intron 30.0%
AAAGATTCAAACTTAAGACC+CGG - chr4_4:75791384-75791403 None:intergenic 30.0%
! TCAGTTATTTCCGTTTACAT+TGG - chr4_4:75791533-75791552 None:intergenic 30.0%
AAATAACTGAACTGAAAACC+AGG + chr4_4:75791543-75791562 Msa0703760:intron 30.0%
! TTTTATTGTCCTCTGTTTTG+GGG - chr4_4:75791579-75791598 None:intergenic 30.0%
!! GTTTTATTGTCCTCTGTTTT+GGG - chr4_4:75791580-75791599 None:intergenic 30.0%
!!! AGTTTTATTGTCCTCTGTTT+TGG - chr4_4:75791581-75791600 None:intergenic 30.0%
! AAACTGAAAAGGTCAAGTTT+TGG + chr4_4:75791616-75791635 Msa0703760:intron 30.0%
ACTGAAACAAAGAATAAAGG+TGG - chr4_4:75791834-75791853 None:intergenic 30.0%
AGGACTGAAACAAAGAATAA+AGG - chr4_4:75791837-75791856 None:intergenic 30.0%
! TGAGTAAATCGTGATTTTGA+TGG - chr4_4:75791882-75791901 None:intergenic 30.0%
AGGAGATTAATCTATTATGC+TGG - chr4_4:75792312-75792331 None:intergenic 30.0%
ATAGTAAAGCAAACTGAAGT+AGG - chr4_4:75792371-75792390 None:intergenic 30.0%
GAACTCTGATAAAATGATGA+TGG - chr4_4:75792449-75792468 None:intergenic 30.0%
ATGTTTAGATTCCATGGTAA+AGG + chr4_4:75792555-75792574 Msa0703760:intron 30.0%
GAAATGCACACAATAGAAAA+AGG + chr4_4:75792581-75792600 Msa0703760:intron 30.0%
AATGCACACAATAGAAAAAG+GGG + chr4_4:75792583-75792602 Msa0703760:intron 30.0%
AAACTAAAAATAAATGGGGG+TGG - chr4_4:75792636-75792655 None:intergenic 30.0%
!!! CCATTTTTTATCAAGCTTTC+TGG - chr4_4:75792825-75792844 None:intergenic 30.0%
CCAGAAAGCTTGATAAAAAA+TGG + chr4_4:75792822-75792841 Msa0703760:CDS 30.0%
TAACCATGTCTCTATTCTTA+CGG - chr4_4:75793109-75793128 None:intergenic 30.0%
AGGATGAAGTGAAGTAAGAT+AGG + chr4_4:75790043-75790062 Msa0703760:five_prime_UTR 35.0%
GGATGAAGTGAAGTAAGATA+GGG + chr4_4:75790044-75790063 Msa0703760:five_prime_UTR 35.0%
AGATAAAACATAAGAGAGCG+CGG + chr4_4:75790110-75790129 Msa0703760:five_prime_UTR 35.0%
AGAAGAAGAAGGTGAAGTAA+CGG - chr4_4:75790156-75790175 None:intergenic 35.0%
!!! AAGGAGGTTTTGGATTGTAA+TGG - chr4_4:75790203-75790222 None:intergenic 35.0%
!! AACCTCTTCGTTGATTTGTT+CGG - chr4_4:75790351-75790370 None:intergenic 35.0%
GAATGAGAGTCTGTGAAATT+AGG + chr4_4:75790625-75790644 Msa0703760:intron 35.0%
GGTTATGTTAGAGAAACAAC+TGG + chr4_4:75790743-75790762 Msa0703760:intron 35.0%
ACAAAACCAAAGACTCACTA+GGG + chr4_4:75790825-75790844 Msa0703760:intron 35.0%
TAGAATGGAAATGGAGAGAA+AGG + chr4_4:75790936-75790955 Msa0703760:intron 35.0%
!! AAGGCATCAGGATTTTTATC+TGG + chr4_4:75791036-75791055 Msa0703760:intron 35.0%
AACATTGAAATGAAAGGCCA+AGG + chr4_4:75791074-75791093 Msa0703760:intron 35.0%
ACATTGAAATGAAAGGCCAA+GGG + chr4_4:75791075-75791094 Msa0703760:intron 35.0%
GTTAACGAATTTGAATCCCT+TGG - chr4_4:75791094-75791113 None:intergenic 35.0%
!! ATTTCAGGTATGGTGTTTTC+TGG - chr4_4:75791194-75791213 None:intergenic 35.0%
AGAAAACACCATACCTGAAA+TGG + chr4_4:75791193-75791212 Msa0703760:intron 35.0%
GAAAACACCATACCTGAAAT+GGG + chr4_4:75791194-75791213 Msa0703760:intron 35.0%
AAAACACCATACCTGAAATG+GGG + chr4_4:75791195-75791214 Msa0703760:intron 35.0%
!!! CTTTTCAGGTATGGTATTTC+GGG - chr4_4:75791226-75791245 None:intergenic 35.0%
GAAATACCATACCTGAAAAG+TGG + chr4_4:75791226-75791245 Msa0703760:intron 35.0%
CATAGATTAAATCCATTGCC+GGG + chr4_4:75791363-75791382 Msa0703760:intron 35.0%
!! GTCCTCATTCTTTAGAGTTT+AGG + chr4_4:75791415-75791434 Msa0703760:intron 35.0%
! GACCTAAACTCTAAAGAATG+AGG - chr4_4:75791420-75791439 None:intergenic 35.0%
!! CTTTAGAGTTTAGGTCTTTG+AGG + chr4_4:75791424-75791443 Msa0703760:intron 35.0%
TGCTAATAGCTAACATAGCT+TGG + chr4_4:75791481-75791500 Msa0703760:intron 35.0%
GCTAATAGCTAACATAGCTT+GGG + chr4_4:75791482-75791501 Msa0703760:intron 35.0%
CTAATAGCTAACATAGCTTG+GGG + chr4_4:75791483-75791502 Msa0703760:intron 35.0%
! TGCAGCTAGTTTATGAAGAA+AGG - chr4_4:75791672-75791691 None:intergenic 35.0%
! TGTGGCCTTTTCTATTTTCA+TGG + chr4_4:75791954-75791973 Msa0703760:intron 35.0%
ACACTTGTCTACTGTTATCT+GGG - chr4_4:75792097-75792116 None:intergenic 35.0%
TACACTTGTCTACTGTTATC+TGG - chr4_4:75792098-75792117 None:intergenic 35.0%
AGATAACAGTAGACAAGTGT+AGG + chr4_4:75792097-75792116 Msa0703760:intron 35.0%
GATAACAGTAGACAAGTGTA+GGG + chr4_4:75792098-75792117 Msa0703760:intron 35.0%
AAATCACTTGAGCATTTGTG+GGG - chr4_4:75792184-75792203 None:intergenic 35.0%
GAAATCACTTGAGCATTTGT+GGG - chr4_4:75792185-75792204 None:intergenic 35.0%
ATGGAGACGAACATTAATGT+GGG - chr4_4:75792232-75792251 None:intergenic 35.0%
AATGGAGACGAACATTAATG+TGG - chr4_4:75792233-75792252 None:intergenic 35.0%
ACATTAATGTTCGTCTCCAT+TGG + chr4_4:75792232-75792251 Msa0703760:intron 35.0%
TGTGTTGCATAAAGTGGAAA+AGG - chr4_4:75792401-75792420 None:intergenic 35.0%
TGCATTTCTTTCCTTTACCA+TGG - chr4_4:75792569-75792588 None:intergenic 35.0%
TAGAAAGCTTTACCAACAAG+CGG + chr4_4:75792692-75792711 Msa0703760:intron 35.0%
GTAATCATTCACCCAAAAGA+AGG - chr4_4:75792721-75792740 None:intergenic 35.0%
GACATAAAAAACCGTATGAC+AGG - chr4_4:75793073-75793092 None:intergenic 35.0%
TAACCGTAAGAATAGAGACA+TGG + chr4_4:75793103-75793122 Msa0703760:three_prime_UTR 35.0%
CAATTCACTGCCTTCAAATT+AGG + chr4_4:75793138-75793157 Msa0703760:three_prime_UTR 35.0%
AAGTGAAGTAAGATAGGGTG+TGG + chr4_4:75790049-75790068 Msa0703760:five_prime_UTR 40.0%
CAATCCAAAACCTCCTTCAA+TGG + chr4_4:75790206-75790225 Msa0703760:CDS 40.0%
! AATGCCATTGAAGGAGGTTT+TGG - chr4_4:75790213-75790232 None:intergenic 40.0%
! GATGATGGCAAAAAGAGAAG+AGG + chr4_4:75790298-75790317 Msa0703760:CDS 40.0%
GAAGAGGTTGTTGACCTTAA+GGG + chr4_4:75790362-75790381 Msa0703760:CDS 40.0%
GGACTTAAACTCATTACGAG+CGG - chr4_4:75790417-75790436 None:intergenic 40.0%
AGTGCAAGAGACTTGTGTTT+AGG + chr4_4:75790784-75790803 Msa0703760:intron 40.0%
GTGCAAGAGACTTGTGTTTA+GGG + chr4_4:75790785-75790804 Msa0703760:intron 40.0%
CACAAAACCAAAGACTCACT+AGG + chr4_4:75790824-75790843 Msa0703760:intron 40.0%
TGGAAATGGAGAGAAAGGAA+AGG + chr4_4:75790941-75790960 Msa0703760:intron 40.0%
TGCAAATGGGATGTAGACAT+AGG - chr4_4:75790974-75790993 None:intergenic 40.0%
!! GGGTAAAATTTGAAGGCATC+AGG + chr4_4:75791024-75791043 Msa0703760:intron 40.0%
ATACCTGAAAAGTGGAGAGT+GGG + chr4_4:75791234-75791253 Msa0703760:intron 40.0%
ATCAGTTGCATGAGTGGAAA+AGG - chr4_4:75791990-75792009 None:intergenic 40.0%
CAGAATATCAGTTGCATGAG+TGG - chr4_4:75791996-75792015 None:intergenic 40.0%
GGAAATCACTTGAGCATTTG+TGG - chr4_4:75792186-75792205 None:intergenic 40.0%
AGACGAACATTAATGTGGGA+AGG - chr4_4:75792228-75792247 None:intergenic 40.0%
AAACAGAACACGTGGCAATA+GGG - chr4_4:75792281-75792300 None:intergenic 40.0%
AAAGAAGCAGTGCATTAGCT+AGG + chr4_4:75792525-75792544 Msa0703760:intron 40.0%
GAATCACAATATCACCAAGC+TGG + chr4_4:75792609-75792628 Msa0703760:intron 40.0%
! GCTTGTTGGTAAAGCTTTCT+AGG - chr4_4:75792693-75792712 None:intergenic 40.0%
AAAAGAAGGATACCGCTTGT+TGG - chr4_4:75792707-75792726 None:intergenic 40.0%
! AACAAGCGGTATCCTTCTTT+TGG + chr4_4:75792706-75792725 Msa0703760:intron 40.0%
! ACAAGCGGTATCCTTCTTTT+GGG + chr4_4:75792707-75792726 Msa0703760:intron 40.0%
CTCCATCTTTAGTGAAGCTT+CGG + chr4_4:75792870-75792889 Msa0703760:CDS 40.0%
TCCATCTTTAGTGAAGCTTC+GGG + chr4_4:75792871-75792890 Msa0703760:CDS 40.0%
CCTATGTTCTTCCTGTCATA+CGG + chr4_4:75793059-75793078 Msa0703760:three_prime_UTR 40.0%
AAGAGGAGTTGCGCTCATAA+AGG + chr4_4:75790023-75790042 Msa0703760:five_prime_UTR 45.0%
! AAGAAGGTGAAGTAACGGAG+AGG - chr4_4:75790151-75790170 None:intergenic 45.0%
TAGACGAATGCCATTGAAGG+AGG - chr4_4:75790219-75790238 None:intergenic 45.0%
ACGTAGACGAATGCCATTGA+AGG - chr4_4:75790222-75790241 None:intergenic 45.0%
TTCGGTCTCAGTTGTGATGA+TGG + chr4_4:75790283-75790302 Msa0703760:CDS 45.0%
!! CTCTTCGTTGATTTGTTCGG+TGG - chr4_4:75790348-75790367 None:intergenic 45.0%
CACCGAACAAATCAACGAAG+AGG + chr4_4:75790346-75790365 Msa0703760:CDS 45.0%
CGAAGAGGTTGTTGACCTTA+AGG + chr4_4:75790361-75790380 Msa0703760:CDS 45.0%
! CATTACGAGCGGATTTCTGA+AGG - chr4_4:75790406-75790425 None:intergenic 45.0%
! GGAATGAATAGGGTGCTAGT+AGG + chr4_4:75790646-75790665 Msa0703760:intron 45.0%
! ACAACTGGCTTCTTATTGCC+TGG + chr4_4:75790758-75790777 Msa0703760:intron 45.0%
AAACCAAAGACTCACTAGGG+TGG + chr4_4:75790828-75790847 Msa0703760:intron 45.0%
AACCAAAGACTCACTAGGGT+GGG + chr4_4:75790829-75790848 Msa0703760:intron 45.0%
!!! CACTCTCCACTTTTCAGGTA+TGG - chr4_4:75791235-75791254 None:intergenic 45.0%
CATACCTGAAAAGTGGAGAG+TGG + chr4_4:75791233-75791252 Msa0703760:intron 45.0%
TACCTGAAAAGTGGAGAGTG+GGG + chr4_4:75791235-75791254 Msa0703760:intron 45.0%
TCCTCCAAGCCATCTTACAA+CGG - chr4_4:75791267-75791286 None:intergenic 45.0%
GAGTCTACAAGCCATCGTAT+TGG - chr4_4:75791327-75791346 None:intergenic 45.0%
TCAAACTTAAGACCCGGCAA+TGG - chr4_4:75791378-75791397 None:intergenic 45.0%
!!! TCCTCTGTTTTGGGGTTCTT+CGG - chr4_4:75791571-75791590 None:intergenic 45.0%
AATGTGACCATGCTCACATC+AGG + chr4_4:75791725-75791744 Msa0703760:intron 45.0%
AGACATTCCTGATGTGAGCA+TGG - chr4_4:75791735-75791754 None:intergenic 45.0%
AGTGTAGGGATACACCGAAA+CGG + chr4_4:75792112-75792131 Msa0703760:intron 45.0%
GTGGGGTGACTAATAACACA+GGG - chr4_4:75792167-75792186 None:intergenic 45.0%
TGTGGGGTGACTAATAACAC+AGG - chr4_4:75792168-75792187 None:intergenic 45.0%
! GGATAGATGTGTGGTGGAAT+AGG - chr4_4:75792207-75792226 None:intergenic 45.0%
ATGTGGGAAGGATAGATGTG+TGG - chr4_4:75792216-75792235 None:intergenic 45.0%
AACAGAACACGTGGCAATAG+GGG - chr4_4:75792280-75792299 None:intergenic 45.0%
CAAACAGAACACGTGGCAAT+AGG - chr4_4:75792282-75792301 None:intergenic 45.0%
CTATTGCCACGTGTTCTGTT+TGG + chr4_4:75792280-75792299 Msa0703760:intron 45.0%
ATCCTACCAAACAGAACACG+TGG - chr4_4:75792289-75792308 None:intergenic 45.0%
! TGTCAGTACTGAAGGACTGA+AGG - chr4_4:75792332-75792351 None:intergenic 45.0%
! CAGAAGTCTGTCAGTACTGA+AGG - chr4_4:75792340-75792359 None:intergenic 45.0%
CATAAAGTGGAAAAGGAGCG+CGG - chr4_4:75792394-75792413 None:intergenic 45.0%
TTTATGCAACACACCCGCAT+GGG + chr4_4:75792408-75792427 Msa0703760:intron 45.0%
AATTGAGGAGAATGGGCACT+AGG + chr4_4:75792490-75792509 Msa0703760:intron 45.0%
ATTGAGGAGAATGGGCACTA+GGG + chr4_4:75792491-75792510 Msa0703760:intron 45.0%
CTCGCTTGCTTACTGTAAAG+CGG + chr4_4:75792762-75792781 Msa0703760:CDS 45.0%
TCGCTTGCTTACTGTAAAGC+GGG + chr4_4:75792763-75792782 Msa0703760:CDS 45.0%
AGCTTCACTAAAGATGGAGG+TGG - chr4_4:75792869-75792888 None:intergenic 45.0%
CGAAGCTTCACTAAAGATGG+AGG - chr4_4:75792872-75792891 None:intergenic 45.0%
TCCCGAAGCTTCACTAAAGA+TGG - chr4_4:75792875-75792894 None:intergenic 45.0%
ATCTTTAGTGAAGCTTCGGG+AGG + chr4_4:75792874-75792893 Msa0703760:CDS 45.0%
CCGTATGACAGGAAGAACAT+AGG - chr4_4:75793062-75793081 None:intergenic 45.0%
!! TATTAAAACTAAAAATAAAT+GGG - chr4_4:75792641-75792660 None:intergenic 5.0%
!! ATATTAAAACTAAAAATAAA+TGG - chr4_4:75792642-75792661 None:intergenic 5.0%
GCTGGAATTGTGCACGTGTT+TGG - chr4_4:75790248-75790267 None:intergenic 50.0%
CATCACAACTGAGACCGAAG+CGG - chr4_4:75790282-75790301 None:intergenic 50.0%
GCATGAGCAACTCTCCCTTA+AGG - chr4_4:75790379-75790398 None:intergenic 50.0%
TTTCCGTCGCATGCGTAAGA+CGG + chr4_4:75790442-75790461 Msa0703760:CDS 50.0%
ATACCGTCTTACGCATGCGA+CGG - chr4_4:75790448-75790467 None:intergenic 50.0%
! CAAGTCTCTTGCACTGATCC+AGG - chr4_4:75790779-75790798 None:intergenic 50.0%
ACCAAAGACTCACTAGGGTG+GGG + chr4_4:75790830-75790849 Msa0703760:intron 50.0%
GTATTGCGGCGCATAGCAAT+TGG + chr4_4:75791167-75791186 Msa0703760:intron 50.0%
! GACTCTCCCCATTTCAGGTA+TGG - chr4_4:75791204-75791223 None:intergenic 50.0%
TGGAGGAGAAGTCATTCTCC+TGG + chr4_4:75791280-75791299 Msa0703760:intron 50.0%
!!! TTTTGGGGTTCTTCGGTTCC+TGG - chr4_4:75791564-75791583 None:intergenic 50.0%
ACCGAAGAACCCCAAAACAG+AGG + chr4_4:75791567-75791586 Msa0703760:intron 50.0%
TGGGAAGGATAGATGTGTGG+TGG - chr4_4:75792213-75792232 None:intergenic 50.0%
ATGGGAGATGCAGGAACCAA+TGG - chr4_4:75792251-75792270 None:intergenic 50.0%
TGCCACGTGTTCTGTTTGGT+AGG + chr4_4:75792284-75792303 Msa0703760:intron 50.0%
TGCGGGTGTGTTGCATAAAG+TGG - chr4_4:75792407-75792426 None:intergenic 50.0%
CTTTATGCAACACACCCGCA+TGG + chr4_4:75792407-75792426 Msa0703760:intron 50.0%
ATGGGCACTAGGGATTCAGT+AGG + chr4_4:75792501-75792520 Msa0703760:intron 50.0%
AAAGCGGGAAAGAGAGATCG+AGG + chr4_4:75792778-75792797 Msa0703760:CDS 50.0%
! AGAGAGATCGAGGAGGGTAT+TGG + chr4_4:75792788-75792807 Msa0703760:CDS 50.0%
!! TCGAGGAGGGTATTGGTAAG+AGG + chr4_4:75792795-75792814 Msa0703760:CDS 50.0%
TTTAGTGAAGCTTCGGGAGG+AGG + chr4_4:75792877-75792896 Msa0703760:CDS 50.0%
AGAAGCCGCTGAAGCTGAAA+AGG + chr4_4:75792910-75792929 Msa0703760:CDS 50.0%
! TGCAGCCTTTTCAGCTTCAG+CGG - chr4_4:75792918-75792937 None:intergenic 50.0%
AGCGACGAAACACACCGCTT+CGG + chr4_4:75790265-75790284 Msa0703760:CDS 55.0%
ACGCATGCGACGGAAATCAC+TGG - chr4_4:75790438-75790457 None:intergenic 55.0%
TCCCCACCCTAGTGAGTCTT+TGG - chr4_4:75790834-75790853 None:intergenic 55.0%
TTCGGGACTCTCCCCATTTC+AGG - chr4_4:75791209-75791228 None:intergenic 55.0%
!! CACCCCACTCTCCACTTTTC+AGG - chr4_4:75791240-75791259 None:intergenic 55.0%
CTGAAAAGTGGAGAGTGGGG+TGG + chr4_4:75791238-75791257 Msa0703760:intron 55.0%
AAAAGTGGAGAGTGGGGTGG+TGG + chr4_4:75791241-75791260 Msa0703760:intron 55.0%
GTGGCCGTTGTAAGATGGCT+TGG + chr4_4:75791260-75791279 Msa0703760:intron 55.0%
! GCCGTTGTAAGATGGCTTGG+AGG + chr4_4:75791263-75791282 Msa0703760:intron 55.0%
TGGCAATAGGGGAGGGCAAT+GGG - chr4_4:75792269-75792288 None:intergenic 55.0%
GAACACGTGGCAATAGGGGA+GGG - chr4_4:75792276-75792295 None:intergenic 55.0%
AGAACACGTGGCAATAGGGG+AGG - chr4_4:75792277-75792296 None:intergenic 55.0%
TAAATGGGGGTGGACCAGCT+TGG - chr4_4:75792626-75792645 None:intergenic 55.0%
CGGGAAAGAGAGATCGAGGA+GGG + chr4_4:75792782-75792801 Msa0703760:CDS 55.0%
GCTGAAAAGGCTGCATGAGC+TGG + chr4_4:75792923-75792942 Msa0703760:exon 55.0%
GAAGCGGTGTGTTTCGTCGC+TGG - chr4_4:75790266-75790285 None:intergenic 60.0%
! GGGTGGTGGCCGTTGTAAGA+TGG + chr4_4:75791255-75791274 Msa0703760:intron 60.0%
GTGGCAATAGGGGAGGGCAA+TGG - chr4_4:75792270-75792289 None:intergenic 60.0%
ATGCAACACACCCGCATGGG+AGG + chr4_4:75792411-75792430 Msa0703760:intron 60.0%
GCGGGAAAGAGAGATCGAGG+AGG + chr4_4:75792781-75792800 Msa0703760:CDS 60.0%
GGGAGGGCAATGGGAGATGC+AGG - chr4_4:75792260-75792279 None:intergenic 65.0%
CCGTCATGAGCCTCCCATGC+GGG - chr4_4:75792424-75792443 None:intergenic 65.0%
CCCGCATGGGAGGCTCATGA+CGG + chr4_4:75792421-75792440 Msa0703760:intron 65.0%
CCCGTCATGAGCCTCCCATG+CGG - chr4_4:75792425-75792444 None:intergenic 65.0%
CCGCATGGGAGGCTCATGAC+GGG + chr4_4:75792422-75792441 Msa0703760:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 75790018 75793202 75790018 ID=Msa0703760;Name=Msa0703760
chr4_4 mRNA 75790018 75793202 75790018 ID=Msa0703760-mRNA-1;Parent=Msa0703760;Name=Msa0703760-mRNA-1;_AED=0.01;_eAED=0.01;_QI=122|1|1|1|1|1|2|262|168
chr4_4 exon 75790018 75790463 75790018 ID=Msa0703760-mRNA-1:exon:23864;Parent=Msa0703760-mRNA-1
chr4_4 exon 75792758 75793202 75792758 ID=Msa0703760-mRNA-1:exon:23865;Parent=Msa0703760-mRNA-1
chr4_4 five_prime_UTR 75790018 75790139 75790018 ID=Msa0703760-mRNA-1:five_prime_utr;Parent=Msa0703760-mRNA-1
chr4_4 CDS 75790140 75790463 75790140 ID=Msa0703760-mRNA-1:cds;Parent=Msa0703760-mRNA-1
chr4_4 CDS 75792758 75792940 75792758 ID=Msa0703760-mRNA-1:cds;Parent=Msa0703760-mRNA-1
chr4_4 three_prime_UTR 75792941 75793202 75792941 ID=Msa0703760-mRNA-1:three_prime_utr;Parent=Msa0703760-mRNA-1
Gene Sequence

>Msa0703760

ATGTTGAACCTCTCCGTTACTTCACCTTCTTCTTCTTCAAAACTTTCCTTTCTTCCAAAACCATTACAATCCAAAACCTCCTTCAATGGCATTCGTCTACGTCAACCAAACACGTGCACAATTCCAGCGACGAAACACACCGCTTCGGTCTCAGTTGTGATGATGGCAAAAAGAGAAGAGGAATTGAAGCAAATTAGAACTAAAACCACCGAACAAATCAACGAAGAGGTTGTTGACCTTAAGGGAGAGTTGCTCATGCTTCGCCTTCAGAAATCCGCTCGTAATGAGTTTAAGTCCAGTGATTTCCGTCGCATGCGTAAGACGATTGCTCGCTTGCTTACTGTAAAGCGGGAAAGAGAGATCGAGGAGGGTATTGGTAAGAGGTTGTCCAGAAAGCTTGATAAAAAATGGAAGAAAAGCATTGTTGTAAAACCACCTCCATCTTTAGTGAAGCTTCGGGAGGAGGAAGCAGCTGCAGAAGCCGCTGAAGCTGAAAAGGCTGCATGA

Protein sequence

>Msa0703760

MLNLSVTSPSSSSKLSFLPKPLQSKTSFNGIRLRQPNTCTIPATKHTASVSVVMMAKREEELKQIRTKTTEQINEEVVDLKGELLMLRLQKSARNEFKSSDFRRMRKTIARLLTVKREREIEEGIGKRLSRKLDKKWKKSIVVKPPPSLVKLREEEAAAEAAEAEKAA*