Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485160 | XP_003604797.1 | 99.444 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 2.23e-126 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485160 | G7JR81 | 99.444 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 1.06e-126 | 363 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0393100 | Msa0485160 | 0.812755 | 3.614822e-51 | -8.615850e-47 |
| Msa0485160 | Msa0488580 | 0.802937 | 4.425238e-49 | -8.615850e-47 |
| Msa0485160 | Msa0590390 | 0.911557 | 5.315271e-83 | -8.615850e-47 |
| Msa0485160 | Msa1089600 | 0.966855 | 1.754915e-126 | -8.615850e-47 |
| Msa0485160 | Msa1422230 | 0.803161 | 3.977752e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485160 | MtrunA17_Chr4g0008141 | 99.444 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 2.05e-130 | 363 |
| Msa0485160 | MtrunA17_Chr4g0008131 | 85.207 | 169 | 25 | 0 | 1 | 169 | 1 | 169 | 2.60e-106 | 303 |
| Msa0485160 | MtrunA17_Chr4g0008121 | 82.682 | 179 | 31 | 0 | 1 | 179 | 1 | 179 | 1.19e-101 | 291 |
| Msa0485160 | MtrunA17_Chr7g0241061 | 67.416 | 178 | 58 | 0 | 1 | 178 | 1 | 178 | 5.91e-89 | 258 |
| Msa0485160 | MtrunA17_Chr6g0472041 | 51.553 | 161 | 77 | 1 | 6 | 165 | 3 | 163 | 3.74e-57 | 178 |
| Msa0485160 | MtrunA17_Chr1g0203171 | 52.795 | 161 | 75 | 1 | 7 | 166 | 10 | 170 | 5.67e-57 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485160 | AT3G54040.1 | 54.011 | 187 | 76 | 5 | 1 | 181 | 1 | 183 | 6.67e-64 | 195 |
| Msa0485160 | AT3G54040.2 | 54.301 | 186 | 75 | 5 | 1 | 180 | 57 | 238 | 1.73e-63 | 196 |
| Msa0485160 | AT5G52390.1 | 44.571 | 175 | 95 | 1 | 7 | 179 | 8 | 182 | 4.96e-50 | 160 |
Find 53 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCTTCTTCTCAGTAATTT+TGG | 0.107847 | 3_4:-2726682 | Msa0485160:exon |
| GTTCTCCAATTATCAAATTT+TGG | 0.153493 | 3_4:-2726478 | Msa0485160:three_prime_UTR |
| CAATTCCAAAATTTGATAAT+TGG | 0.174956 | 3_4:+2726473 | None:intergenic |
| AAAGGTATAGTTTGGGAAAA+TGG | 0.222736 | 3_4:+2728227 | None:intergenic |
| TTCTAAATAAAGGTATAGTT+TGG | 0.253324 | 3_4:+2728219 | None:intergenic |
| TTTCTCATCCATGCATCTTT+AGG | 0.256802 | 3_4:-2728149 | Msa0485160:intron |
| AAGAAAAGGTCAACAATGTT+AGG | 0.281319 | 3_4:+2727702 | None:intergenic |
| TTGTGTTTCTCACATAGTTC+TGG | 0.298056 | 3_4:+2726806 | None:intergenic |
| GTGAGCTCCGGAGCTGCATT+TGG | 0.320930 | 3_4:-2726752 | Msa0485160:CDS |
| AAAATGGAGAAAATATATTT+AGG | 0.323325 | 3_4:+2728243 | None:intergenic |
| TTTGGAATTGTTTCTGCTCT+TGG | 0.349280 | 3_4:-2726460 | Msa0485160:three_prime_UTR |
| AAAGACATGGTTCTAAATAA+AGG | 0.352345 | 3_4:+2728209 | None:intergenic |
| TTTCTCAACAAAATTATCAT+TGG | 0.381811 | 3_4:-2728189 | Msa0485160:CDS |
| GATATATAGAGGGAAATATA+TGG | 0.386461 | 3_4:-2726597 | Msa0485160:three_prime_UTR |
| ATCTGGAAAGAGATGTTTGT+TGG | 0.389390 | 3_4:-2727931 | Msa0485160:CDS |
| TCTAAATAAAGGTATAGTTT+GGG | 0.400681 | 3_4:+2728220 | None:intergenic |
| TGTTTGTTGGAGACTCAAAA+AGG | 0.420286 | 3_4:-2727918 | Msa0485160:CDS |
| TGTAATAATCAAGTTGAGTT+GGG | 0.422661 | 3_4:-2726544 | Msa0485160:three_prime_UTR |
| ACTTTCTCAGTAGCTTCATC+TGG | 0.424996 | 3_4:-2727948 | Msa0485160:CDS |
| GAGAAAGTACACACTTCCTT+TGG | 0.445012 | 3_4:+2727963 | None:intergenic |
| AGCGGGGCCAAATGCAGCTC+CGG | 0.448289 | 3_4:+2726745 | None:intergenic |
| CAGCAGCCATATTGAAGAAA+AGG | 0.460023 | 3_4:+2727688 | None:intergenic |
| CTCCAAAATTACTGAGAAGA+AGG | 0.460297 | 3_4:+2726680 | None:intergenic |
| GAAAATATATTTAGGAAAGA+AGG | 0.461402 | 3_4:+2728251 | None:intergenic |
| TTCTTTGAGCCACAATTCAC+TGG | 0.461563 | 3_4:-2727759 | Msa0485160:CDS |
| TTCAATATGGCTGCTGGAGA+GGG | 0.471243 | 3_4:-2727681 | Msa0485160:intron |
| TCCTCTGAAACTGAAGAAGC+GGG | 0.487005 | 3_4:+2726728 | None:intergenic |
| CTATAGTAGAGGATATATAG+AGG | 0.488277 | 3_4:-2726608 | Msa0485160:three_prime_UTR |
| TAGAACATCTGAAGTTATAG+TGG | 0.488747 | 3_4:-2727868 | Msa0485160:CDS |
| ATGTAATAATCAAGTTGAGT+TGG | 0.497257 | 3_4:-2726545 | Msa0485160:three_prime_UTR |
| CTTCAATATGGCTGCTGGAG+AGG | 0.505716 | 3_4:-2727682 | Msa0485160:CDS |
| ATGGTCGAGCTTGTGAGCTC+CGG | 0.514705 | 3_4:-2726764 | Msa0485160:CDS |
| CCCCGCTTCTTCAGTTTCAG+AGG | 0.514848 | 3_4:-2726729 | Msa0485160:CDS |
| AGAAAAGGTCAACAATGTTA+GGG | 0.524892 | 3_4:+2727703 | None:intergenic |
| TGAGAAGAAGGTGCAGCTGC+AGG | 0.526134 | 3_4:+2726692 | None:intergenic |
| GACCAACCCTCGTCGTGCTA+TGG | 0.530876 | 3_4:-2726783 | Msa0485160:CDS |
| GTCCTCTGAAACTGAAGAAG+CGG | 0.537628 | 3_4:+2726727 | None:intergenic |
| TCCTATGTTTACTATAGTAG+AGG | 0.567624 | 3_4:-2726619 | Msa0485160:three_prime_UTR |
| AATACATACCTAAAGATGCA+TGG | 0.573736 | 3_4:+2728141 | None:intergenic |
| TATAGTAGAGGATATATAGA+GGG | 0.575325 | 3_4:-2726607 | Msa0485160:three_prime_UTR |
| GACCATAGCACGACGAGGGT+TGG | 0.575610 | 3_4:+2726781 | None:intergenic |
| TGCAGCTGAAATGGCATGTG+AGG | 0.589265 | 3_4:-2727991 | Msa0485160:intron |
| TCCTCTACTATAGTAAACAT+AGG | 0.591635 | 3_4:+2726618 | None:intergenic |
| CAAAGTTTGCCAGTGAATTG+TGG | 0.594692 | 3_4:+2727750 | None:intergenic |
| CACCACATGCTTCCACACAT+TGG | 0.599473 | 3_4:+2727817 | None:intergenic |
| GGTGTTGATAGAAGTTCTGT+TGG | 0.610517 | 3_4:-2727798 | Msa0485160:CDS |
| TCAAAACAAATTCAATAACA+AGG | 0.649748 | 3_4:+2726571 | None:intergenic |
| GGCATGTGAGGACTTACCAA+AGG | 0.656235 | 3_4:-2727979 | Msa0485160:CDS |
| AGCTCGACCATAGCACGACG+AGG | 0.664011 | 3_4:+2726776 | None:intergenic |
| CATTGAGACAGACCAATGTG+TGG | 0.673666 | 3_4:-2727829 | Msa0485160:CDS |
| GCTCGACCATAGCACGACGA+GGG | 0.698174 | 3_4:+2726777 | None:intergenic |
| CCTCTGAAACTGAAGAAGCG+GGG | 0.706772 | 3_4:+2726729 | None:intergenic |
| GACCAATGTGTGGAAGCATG+TGG | 0.721045 | 3_4:-2727819 | Msa0485160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATATAATTATATGTGT+TGG | - | chr3_4:2727248-2727267 | Msa0485160:intron | 10.0% |
| !!! | TTTGAAGTTAAAATATTTTA+TGG | + | chr3_4:2727705-2727724 | None:intergenic | 10.0% |
| !! | TTTAATATAATTATATGTGT+TGG | - | chr3_4:2727248-2727267 | Msa0485160:intron | 10.0% |
| !!! | TTTGAAGTTAAAATATTTTA+TGG | + | chr3_4:2727705-2727724 | None:intergenic | 10.0% |
| !! | AAAATGGAGAAAATATATTT+AGG | + | chr3_4:2726492-2726511 | None:intergenic | 15.0% |
| !!! | GATTTTTTTCAAATTATTAG+TGG | + | chr3_4:2727222-2727241 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAATGTAACCT+AGG | - | chr3_4:2727778-2727797 | Msa0485160:CDS | 15.0% |
| !! | AAAATGGAGAAAATATATTT+AGG | + | chr3_4:2726492-2726511 | None:intergenic | 15.0% |
| !!! | GATTTTTTTCAAATTATTAG+TGG | + | chr3_4:2727222-2727241 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAATGTAACCT+AGG | - | chr3_4:2727778-2727797 | Msa0485160:CDS | 15.0% |
| !! | GAAAATATATTTAGGAAAGA+AGG | + | chr3_4:2726484-2726503 | None:intergenic | 20.0% |
| !!! | TCTAAATAAAGGTATAGTTT+GGG | + | chr3_4:2726515-2726534 | None:intergenic | 20.0% |
| !!! | TTCTAAATAAAGGTATAGTT+TGG | + | chr3_4:2726516-2726535 | None:intergenic | 20.0% |
| !! | TTTCTCAACAAAATTATCAT+TGG | - | chr3_4:2726543-2726562 | Msa0485160:three_prime_UTR | 20.0% |
| !!! | TTAGTTGTTCATTTTTTTCT+TGG | - | chr3_4:2726674-2726693 | Msa0485160:exon | 20.0% |
| !! | ATTGTTGATATTGGAAAATT+TGG | + | chr3_4:2727470-2727489 | None:intergenic | 20.0% |
| !!! | TTTTCCAATATCAACAATTT+TGG | - | chr3_4:2727472-2727491 | Msa0485160:intron | 20.0% |
| !!! | TTTAACTTCAAATCTAATCA+AGG | - | chr3_4:2727713-2727732 | Msa0485160:CDS | 20.0% |
| !! | TAGAAAATAAACAAATTCCT+AGG | + | chr3_4:2727798-2727817 | None:intergenic | 20.0% |
| !! | TCAAAACAAATTCAATAACA+AGG | + | chr3_4:2728164-2728183 | None:intergenic | 20.0% |
| !!! | CAATTCCAAAATTTGATAAT+TGG | + | chr3_4:2728262-2728281 | None:intergenic | 20.0% |
| !! | GAAAATATATTTAGGAAAGA+AGG | + | chr3_4:2726484-2726503 | None:intergenic | 20.0% |
| !!! | TCTAAATAAAGGTATAGTTT+GGG | + | chr3_4:2726515-2726534 | None:intergenic | 20.0% |
| !!! | TTCTAAATAAAGGTATAGTT+TGG | + | chr3_4:2726516-2726535 | None:intergenic | 20.0% |
| !! | TTTCTCAACAAAATTATCAT+TGG | - | chr3_4:2726543-2726562 | Msa0485160:three_prime_UTR | 20.0% |
| !!! | TTAGTTGTTCATTTTTTTCT+TGG | - | chr3_4:2726674-2726693 | Msa0485160:exon | 20.0% |
| !! | ATTGTTGATATTGGAAAATT+TGG | + | chr3_4:2727470-2727489 | None:intergenic | 20.0% |
| !!! | TTTTCCAATATCAACAATTT+TGG | - | chr3_4:2727472-2727491 | Msa0485160:intron | 20.0% |
| !!! | TTTAACTTCAAATCTAATCA+AGG | - | chr3_4:2727713-2727732 | Msa0485160:CDS | 20.0% |
| !! | TAGAAAATAAACAAATTCCT+AGG | + | chr3_4:2727798-2727817 | None:intergenic | 20.0% |
| !! | TCAAAACAAATTCAATAACA+AGG | + | chr3_4:2728164-2728183 | None:intergenic | 20.0% |
| !!! | CAATTCCAAAATTTGATAAT+TGG | + | chr3_4:2728262-2728281 | None:intergenic | 20.0% |
| !!! | AAAGACATGGTTCTAAATAA+AGG | + | chr3_4:2726526-2726545 | None:intergenic | 25.0% |
| !! | TAATTTTGTTGAGAAAGACA+TGG | + | chr3_4:2726539-2726558 | None:intergenic | 25.0% |
| ! | AGTTGTGTCTAAATTACAAT+AGG | - | chr3_4:2727129-2727148 | Msa0485160:intron | 25.0% |
| !! | TTAAACTATTCTAGAGAAAC+CGG | + | chr3_4:2727357-2727376 | None:intergenic | 25.0% |
| ! | TTCTTTAATTCTTCTATGCA+AGG | - | chr3_4:2727553-2727572 | Msa0485160:intron | 25.0% |
| !! | TAAACATTGCTCTAAATGTA+AGG | + | chr3_4:2727626-2727645 | None:intergenic | 25.0% |
| !!! | TCTCCTTATGTTTTGTTAAT+TGG | - | chr3_4:2727854-2727873 | Msa0485160:CDS | 25.0% |
| ! | ATGCCAATTAACAAAACATA+AGG | + | chr3_4:2727860-2727879 | None:intergenic | 25.0% |
| ! | TATAGTAGAGGATATATAGA+GGG | - | chr3_4:2728125-2728144 | Msa0485160:intron | 25.0% |
| ! | GATATATAGAGGGAAATATA+TGG | - | chr3_4:2728135-2728154 | Msa0485160:intron | 25.0% |
| !!! | ATGTAATAATCAAGTTGAGT+TGG | - | chr3_4:2728187-2728206 | Msa0485160:CDS | 25.0% |
| !!! | TGTAATAATCAAGTTGAGTT+GGG | - | chr3_4:2728188-2728207 | Msa0485160:CDS | 25.0% |
| !! | GTTCTCCAATTATCAAATTT+TGG | - | chr3_4:2728254-2728273 | Msa0485160:five_prime_UTR | 25.0% |
| !!! | AAAGACATGGTTCTAAATAA+AGG | + | chr3_4:2726526-2726545 | None:intergenic | 25.0% |
| !! | TAATTTTGTTGAGAAAGACA+TGG | + | chr3_4:2726539-2726558 | None:intergenic | 25.0% |
| ! | AGTTGTGTCTAAATTACAAT+AGG | - | chr3_4:2727129-2727148 | Msa0485160:intron | 25.0% |
| !! | TTAAACTATTCTAGAGAAAC+CGG | + | chr3_4:2727357-2727376 | None:intergenic | 25.0% |
| ! | TTCTTTAATTCTTCTATGCA+AGG | - | chr3_4:2727553-2727572 | Msa0485160:intron | 25.0% |
| !! | TAAACATTGCTCTAAATGTA+AGG | + | chr3_4:2727626-2727645 | None:intergenic | 25.0% |
| !!! | TCTCCTTATGTTTTGTTAAT+TGG | - | chr3_4:2727854-2727873 | Msa0485160:CDS | 25.0% |
| ! | ATGCCAATTAACAAAACATA+AGG | + | chr3_4:2727860-2727879 | None:intergenic | 25.0% |
| ! | TATAGTAGAGGATATATAGA+GGG | - | chr3_4:2728125-2728144 | Msa0485160:intron | 25.0% |
| ! | GATATATAGAGGGAAATATA+TGG | - | chr3_4:2728135-2728154 | Msa0485160:intron | 25.0% |
| !!! | ATGTAATAATCAAGTTGAGT+TGG | - | chr3_4:2728187-2728206 | Msa0485160:CDS | 25.0% |
| !!! | TGTAATAATCAAGTTGAGTT+GGG | - | chr3_4:2728188-2728207 | Msa0485160:CDS | 25.0% |
| !! | GTTCTCCAATTATCAAATTT+TGG | - | chr3_4:2728254-2728273 | Msa0485160:five_prime_UTR | 25.0% |
| TAGGAAAGAAGGACTAAAAA+TGG | + | chr3_4:2726473-2726492 | None:intergenic | 30.0% | |
| ! | AAAGGTATAGTTTGGGAAAA+TGG | + | chr3_4:2726508-2726527 | None:intergenic | 30.0% |
| AATACATACCTAAAGATGCA+TGG | + | chr3_4:2726594-2726613 | None:intergenic | 30.0% | |
| ! | ACAAATTTTTGCAGCTGAAA+TGG | - | chr3_4:2726732-2726751 | Msa0485160:CDS | 30.0% |
| ! | TAGAACATCTGAAGTTATAG+TGG | - | chr3_4:2726864-2726883 | Msa0485160:intron | 30.0% |
| AGAAAAGGTCAACAATGTTA+GGG | + | chr3_4:2727032-2727051 | None:intergenic | 30.0% | |
| AAGAAAAGGTCAACAATGTT+AGG | + | chr3_4:2727033-2727052 | None:intergenic | 30.0% | |
| ! | TGTTGACCTTTTCTTCAATA+TGG | - | chr3_4:2727038-2727057 | Msa0485160:intron | 30.0% |
| ! | TCCAATATCAACAATTTTGG+AGG | - | chr3_4:2727475-2727494 | Msa0485160:intron | 30.0% |
| ! | ATTGCTCTAAATGTAAGGAA+AGG | + | chr3_4:2727621-2727640 | None:intergenic | 30.0% |
| CCTGTTGTCACATAAATTTA+AGG | + | chr3_4:2727896-2727915 | None:intergenic | 30.0% | |
| CCTTAAATTTATGTGACAAC+AGG | - | chr3_4:2727893-2727912 | Msa0485160:CDS | 30.0% | |
| !! | TCTCAGTAATTTTGGAGATA+TGG | - | chr3_4:2728058-2728077 | Msa0485160:intron | 30.0% |
| TCCTATGTTTACTATAGTAG+AGG | - | chr3_4:2728113-2728132 | Msa0485160:intron | 30.0% | |
| TCCTCTACTATAGTAAACAT+AGG | + | chr3_4:2728117-2728136 | None:intergenic | 30.0% | |
| CTATAGTAGAGGATATATAG+AGG | - | chr3_4:2728124-2728143 | Msa0485160:intron | 30.0% | |
| TAGGAAAGAAGGACTAAAAA+TGG | + | chr3_4:2726473-2726492 | None:intergenic | 30.0% | |
| ! | AAAGGTATAGTTTGGGAAAA+TGG | + | chr3_4:2726508-2726527 | None:intergenic | 30.0% |
| AATACATACCTAAAGATGCA+TGG | + | chr3_4:2726594-2726613 | None:intergenic | 30.0% | |
| ! | ACAAATTTTTGCAGCTGAAA+TGG | - | chr3_4:2726732-2726751 | Msa0485160:CDS | 30.0% |
| ! | TAGAACATCTGAAGTTATAG+TGG | - | chr3_4:2726864-2726883 | Msa0485160:intron | 30.0% |
| AGAAAAGGTCAACAATGTTA+GGG | + | chr3_4:2727032-2727051 | None:intergenic | 30.0% | |
| AAGAAAAGGTCAACAATGTT+AGG | + | chr3_4:2727033-2727052 | None:intergenic | 30.0% | |
| ! | TGTTGACCTTTTCTTCAATA+TGG | - | chr3_4:2727038-2727057 | Msa0485160:intron | 30.0% |
| ! | TCCAATATCAACAATTTTGG+AGG | - | chr3_4:2727475-2727494 | Msa0485160:intron | 30.0% |
| ! | ATTGCTCTAAATGTAAGGAA+AGG | + | chr3_4:2727621-2727640 | None:intergenic | 30.0% |
| CCTGTTGTCACATAAATTTA+AGG | + | chr3_4:2727896-2727915 | None:intergenic | 30.0% | |
| CCTTAAATTTATGTGACAAC+AGG | - | chr3_4:2727893-2727912 | Msa0485160:CDS | 30.0% | |
| !! | TCTCAGTAATTTTGGAGATA+TGG | - | chr3_4:2728058-2728077 | Msa0485160:intron | 30.0% |
| TCCTATGTTTACTATAGTAG+AGG | - | chr3_4:2728113-2728132 | Msa0485160:intron | 30.0% | |
| TCCTCTACTATAGTAAACAT+AGG | + | chr3_4:2728117-2728136 | None:intergenic | 30.0% | |
| CTATAGTAGAGGATATATAG+AGG | - | chr3_4:2728124-2728143 | Msa0485160:intron | 30.0% | |
| TTTCTCATCCATGCATCTTT+AGG | - | chr3_4:2726583-2726602 | Msa0485160:three_prime_UTR | 35.0% | |
| ATCTGGAAAGAGATGTTTGT+TGG | - | chr3_4:2726801-2726820 | Msa0485160:CDS | 35.0% | |
| ! | TGTTTGTTGGAGACTCAAAA+AGG | - | chr3_4:2726814-2726833 | Msa0485160:CDS | 35.0% |
| GTCAATATCTGTGTCATATC+AGG | + | chr3_4:2727190-2727209 | None:intergenic | 35.0% | |
| TATGAATCATAGACACCCAT+CGG | + | chr3_4:2727326-2727345 | None:intergenic | 35.0% | |
| TATGATTCATAGCAACTCAC+CGG | - | chr3_4:2727335-2727354 | Msa0485160:intron | 35.0% | |
| GCCTCCAAAATTGTTGATAT+TGG | + | chr3_4:2727479-2727498 | None:intergenic | 35.0% | |
| ACTTTCTTAGTGATTGTCGA+CGG | + | chr3_4:2727673-2727692 | None:intergenic | 35.0% | |
| TTGTGTTTCTCACATAGTTC+TGG | + | chr3_4:2727929-2727948 | None:intergenic | 35.0% | |
| ! | CACCTTCTTCTCAGTAATTT+TGG | - | chr3_4:2728050-2728069 | Msa0485160:intron | 35.0% |
| CTCCAAAATTACTGAGAAGA+AGG | + | chr3_4:2728055-2728074 | None:intergenic | 35.0% | |
| !! | TTTGGAATTGTTTCTGCTCT+TGG | - | chr3_4:2728272-2728291 | Msa0485160:five_prime_UTR | 35.0% |
| TTTCTCATCCATGCATCTTT+AGG | - | chr3_4:2726583-2726602 | Msa0485160:three_prime_UTR | 35.0% | |
| ATCTGGAAAGAGATGTTTGT+TGG | - | chr3_4:2726801-2726820 | Msa0485160:CDS | 35.0% | |
| ! | TGTTTGTTGGAGACTCAAAA+AGG | - | chr3_4:2726814-2726833 | Msa0485160:CDS | 35.0% |
| GTCAATATCTGTGTCATATC+AGG | + | chr3_4:2727190-2727209 | None:intergenic | 35.0% | |
| TATGAATCATAGACACCCAT+CGG | + | chr3_4:2727326-2727345 | None:intergenic | 35.0% | |
| TATGATTCATAGCAACTCAC+CGG | - | chr3_4:2727335-2727354 | Msa0485160:intron | 35.0% | |
| GCCTCCAAAATTGTTGATAT+TGG | + | chr3_4:2727479-2727498 | None:intergenic | 35.0% | |
| ACTTTCTTAGTGATTGTCGA+CGG | + | chr3_4:2727673-2727692 | None:intergenic | 35.0% | |
| TTGTGTTTCTCACATAGTTC+TGG | + | chr3_4:2727929-2727948 | None:intergenic | 35.0% | |
| ! | CACCTTCTTCTCAGTAATTT+TGG | - | chr3_4:2728050-2728069 | Msa0485160:intron | 35.0% |
| CTCCAAAATTACTGAGAAGA+AGG | + | chr3_4:2728055-2728074 | None:intergenic | 35.0% | |
| !! | TTTGGAATTGTTTCTGCTCT+TGG | - | chr3_4:2728272-2728291 | Msa0485160:five_prime_UTR | 35.0% |
| ! | GAGAAAGTACACACTTCCTT+TGG | + | chr3_4:2726772-2726791 | None:intergenic | 40.0% |
| ACTTTCTCAGTAGCTTCATC+TGG | - | chr3_4:2726784-2726803 | Msa0485160:CDS | 40.0% | |
| !! | GAGACTCAAAAAGGTGTCAA+TGG | - | chr3_4:2726823-2726842 | Msa0485160:intron | 40.0% |
| !! | GGTGTTGATAGAAGTTCTGT+TGG | - | chr3_4:2726934-2726953 | Msa0485160:intron | 40.0% |
| TTCTTTGAGCCACAATTCAC+TGG | - | chr3_4:2726973-2726992 | Msa0485160:intron | 40.0% | |
| CAAAGTTTGCCAGTGAATTG+TGG | + | chr3_4:2726985-2727004 | None:intergenic | 40.0% | |
| CAGCAGCCATATTGAAGAAA+AGG | + | chr3_4:2727047-2727066 | None:intergenic | 40.0% | |
| ! | CTTTTCTTCAATATGGCTGC+TGG | - | chr3_4:2727045-2727064 | Msa0485160:intron | 40.0% |
| GATTAGATGTGTCCTGATGT+TGG | + | chr3_4:2727304-2727323 | None:intergenic | 40.0% | |
| ! | GAGAAAGTACACACTTCCTT+TGG | + | chr3_4:2726772-2726791 | None:intergenic | 40.0% |
| ACTTTCTCAGTAGCTTCATC+TGG | - | chr3_4:2726784-2726803 | Msa0485160:CDS | 40.0% | |
| !! | GAGACTCAAAAAGGTGTCAA+TGG | - | chr3_4:2726823-2726842 | Msa0485160:intron | 40.0% |
| !! | GGTGTTGATAGAAGTTCTGT+TGG | - | chr3_4:2726934-2726953 | Msa0485160:intron | 40.0% |
| TTCTTTGAGCCACAATTCAC+TGG | - | chr3_4:2726973-2726992 | Msa0485160:intron | 40.0% | |
| CAAAGTTTGCCAGTGAATTG+TGG | + | chr3_4:2726985-2727004 | None:intergenic | 40.0% | |
| CAGCAGCCATATTGAAGAAA+AGG | + | chr3_4:2727047-2727066 | None:intergenic | 40.0% | |
| ! | CTTTTCTTCAATATGGCTGC+TGG | - | chr3_4:2727045-2727064 | Msa0485160:intron | 40.0% |
| GATTAGATGTGTCCTGATGT+TGG | + | chr3_4:2727304-2727323 | None:intergenic | 40.0% | |
| CATTGAGACAGACCAATGTG+TGG | - | chr3_4:2726903-2726922 | Msa0485160:intron | 45.0% | |
| !! | GGGCACTTTTTGTAACAAGC+TGG | + | chr3_4:2727012-2727031 | None:intergenic | 45.0% |
| TTCAATATGGCTGCTGGAGA+GGG | - | chr3_4:2727051-2727070 | Msa0485160:intron | 45.0% | |
| TCAGGACACATCTAATCCGA+TGG | - | chr3_4:2727307-2727326 | Msa0485160:intron | 45.0% | |
| CAGGACACATCTAATCCGAT+GGG | - | chr3_4:2727308-2727327 | Msa0485160:intron | 45.0% | |
| !! | TCCTCTGAAACTGAAGAAGC+GGG | + | chr3_4:2728007-2728026 | None:intergenic | 45.0% |
| !! | GTCCTCTGAAACTGAAGAAG+CGG | + | chr3_4:2728008-2728027 | None:intergenic | 45.0% |
| CATTGAGACAGACCAATGTG+TGG | - | chr3_4:2726903-2726922 | Msa0485160:intron | 45.0% | |
| !! | GGGCACTTTTTGTAACAAGC+TGG | + | chr3_4:2727012-2727031 | None:intergenic | 45.0% |
| TTCAATATGGCTGCTGGAGA+GGG | - | chr3_4:2727051-2727070 | Msa0485160:intron | 45.0% | |
| TCAGGACACATCTAATCCGA+TGG | - | chr3_4:2727307-2727326 | Msa0485160:intron | 45.0% | |
| CAGGACACATCTAATCCGAT+GGG | - | chr3_4:2727308-2727327 | Msa0485160:intron | 45.0% | |
| !! | TCCTCTGAAACTGAAGAAGC+GGG | + | chr3_4:2728007-2728026 | None:intergenic | 45.0% |
| !! | GTCCTCTGAAACTGAAGAAG+CGG | + | chr3_4:2728008-2728027 | None:intergenic | 45.0% |
| !!! | ATATTGATTTTTTTTTTAAT+CGG | + | chr3_4:2727392-2727411 | None:intergenic | 5.0% |
| !!! | AATATATAATTTTAATGTTT+TGG | + | chr3_4:2728094-2728113 | None:intergenic | 5.0% |
| !!! | ATATTGATTTTTTTTTTAAT+CGG | + | chr3_4:2727392-2727411 | None:intergenic | 5.0% |
| !!! | AATATATAATTTTAATGTTT+TGG | + | chr3_4:2728094-2728113 | None:intergenic | 5.0% |
| TGCAGCTGAAATGGCATGTG+AGG | - | chr3_4:2726741-2726760 | Msa0485160:CDS | 50.0% | |
| GGCATGTGAGGACTTACCAA+AGG | - | chr3_4:2726753-2726772 | Msa0485160:CDS | 50.0% | |
| ! | GACCAATGTGTGGAAGCATG+TGG | - | chr3_4:2726913-2726932 | Msa0485160:intron | 50.0% |
| CACCACATGCTTCCACACAT+TGG | + | chr3_4:2726918-2726937 | None:intergenic | 50.0% | |
| CTTCAATATGGCTGCTGGAG+AGG | - | chr3_4:2727050-2727069 | Msa0485160:intron | 50.0% | |
| CACGACACAGATCCAACATC+AGG | - | chr3_4:2727289-2727308 | Msa0485160:intron | 50.0% | |
| TCTTAGTGATTGTCGACGGC+AGG | + | chr3_4:2727669-2727688 | None:intergenic | 50.0% | |
| !! | CCTCTGAAACTGAAGAAGCG+GGG | + | chr3_4:2728006-2728025 | None:intergenic | 50.0% |
| TGCAGCTGAAATGGCATGTG+AGG | - | chr3_4:2726741-2726760 | Msa0485160:CDS | 50.0% | |
| GGCATGTGAGGACTTACCAA+AGG | - | chr3_4:2726753-2726772 | Msa0485160:CDS | 50.0% | |
| ! | GACCAATGTGTGGAAGCATG+TGG | - | chr3_4:2726913-2726932 | Msa0485160:intron | 50.0% |
| CACCACATGCTTCCACACAT+TGG | + | chr3_4:2726918-2726937 | None:intergenic | 50.0% | |
| CTTCAATATGGCTGCTGGAG+AGG | - | chr3_4:2727050-2727069 | Msa0485160:intron | 50.0% | |
| CACGACACAGATCCAACATC+AGG | - | chr3_4:2727289-2727308 | Msa0485160:intron | 50.0% | |
| TCTTAGTGATTGTCGACGGC+AGG | + | chr3_4:2727669-2727688 | None:intergenic | 50.0% | |
| !! | CCTCTGAAACTGAAGAAGCG+GGG | + | chr3_4:2728006-2728025 | None:intergenic | 50.0% |
| ATGGTCGAGCTTGTGAGCTC+CGG | - | chr3_4:2727968-2727987 | Msa0485160:CDS | 55.0% | |
| CCCCGCTTCTTCAGTTTCAG+AGG | - | chr3_4:2728003-2728022 | Msa0485160:intron | 55.0% | |
| ! | TGAGAAGAAGGTGCAGCTGC+AGG | + | chr3_4:2728043-2728062 | None:intergenic | 55.0% |
| ATGGTCGAGCTTGTGAGCTC+CGG | - | chr3_4:2727968-2727987 | Msa0485160:CDS | 55.0% | |
| CCCCGCTTCTTCAGTTTCAG+AGG | - | chr3_4:2728003-2728022 | Msa0485160:intron | 55.0% | |
| ! | TGAGAAGAAGGTGCAGCTGC+AGG | + | chr3_4:2728043-2728062 | None:intergenic | 55.0% |
| GACCAACCCTCGTCGTGCTA+TGG | - | chr3_4:2727949-2727968 | Msa0485160:CDS | 60.0% | |
| GACCATAGCACGACGAGGGT+TGG | + | chr3_4:2727954-2727973 | None:intergenic | 60.0% | |
| GCTCGACCATAGCACGACGA+GGG | + | chr3_4:2727958-2727977 | None:intergenic | 60.0% | |
| AGCTCGACCATAGCACGACG+AGG | + | chr3_4:2727959-2727978 | None:intergenic | 60.0% | |
| GTGAGCTCCGGAGCTGCATT+TGG | - | chr3_4:2727980-2727999 | Msa0485160:CDS | 60.0% | |
| GACCAACCCTCGTCGTGCTA+TGG | - | chr3_4:2727949-2727968 | Msa0485160:CDS | 60.0% | |
| GACCATAGCACGACGAGGGT+TGG | + | chr3_4:2727954-2727973 | None:intergenic | 60.0% | |
| GCTCGACCATAGCACGACGA+GGG | + | chr3_4:2727958-2727977 | None:intergenic | 60.0% | |
| AGCTCGACCATAGCACGACG+AGG | + | chr3_4:2727959-2727978 | None:intergenic | 60.0% | |
| GTGAGCTCCGGAGCTGCATT+TGG | - | chr3_4:2727980-2727999 | Msa0485160:CDS | 60.0% | |
| AGCGGGGCCAAATGCAGCTC+CGG | + | chr3_4:2727990-2728009 | None:intergenic | 65.0% | |
| AGCGGGGCCAAATGCAGCTC+CGG | + | chr3_4:2727990-2728009 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 2726402 | 2728352 | 2726402 | ID=Msa0485160;Name=Msa0485160 |
| chr3_4 | mRNA | 2726402 | 2728352 | 2726402 | ID=Msa0485160-mRNA-1;Parent=Msa0485160;Name=Msa0485160-mRNA-1;_AED=0.07;_eAED=0.07;_QI=136|1|1|1|0.5|0.33|3|286|181 |
| chr3_4 | exon | 2726402 | 2726839 | 2726402 | ID=Msa0485160-mRNA-1:exon:949;Parent=Msa0485160-mRNA-1 |
| chr3_4 | exon | 2727682 | 2728008 | 2727682 | ID=Msa0485160-mRNA-1:exon:948;Parent=Msa0485160-mRNA-1 |
| chr3_4 | exon | 2728150 | 2728352 | 2728150 | ID=Msa0485160-mRNA-1:exon:947;Parent=Msa0485160-mRNA-1 |
| chr3_4 | five_prime_UTR | 2728217 | 2728352 | 2728217 | ID=Msa0485160-mRNA-1:five_prime_utr;Parent=Msa0485160-mRNA-1 |
| chr3_4 | CDS | 2728150 | 2728216 | 2728150 | ID=Msa0485160-mRNA-1:cds;Parent=Msa0485160-mRNA-1 |
| chr3_4 | CDS | 2727682 | 2728008 | 2727682 | ID=Msa0485160-mRNA-1:cds;Parent=Msa0485160-mRNA-1 |
| chr3_4 | CDS | 2726688 | 2726839 | 2726688 | ID=Msa0485160-mRNA-1:cds;Parent=Msa0485160-mRNA-1 |
| chr3_4 | three_prime_UTR | 2726402 | 2726687 | 2726402 | ID=Msa0485160-mRNA-1:three_prime_utr;Parent=Msa0485160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
