AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1089600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1089600 MtrunA17_Chr4g0008141 99.444 180 1 0 1 180 1 180 2.05e-130 363
Msa1089600 MtrunA17_Chr4g0008131 85.207 169 25 0 1 169 1 169 2.60e-106 303
Msa1089600 MtrunA17_Chr4g0008121 82.682 179 31 0 1 179 1 179 1.19e-101 291
Msa1089600 MtrunA17_Chr7g0241061 67.416 178 58 0 1 178 1 178 5.91e-89 258
Msa1089600 MtrunA17_Chr6g0472041 51.553 161 77 1 6 165 3 163 3.74e-57 178
Msa1089600 MtrunA17_Chr1g0203171 52.795 161 75 1 7 166 10 170 5.67e-57 177
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1089600 AT3G54040.1 54.011 187 76 5 1 181 1 183 6.67e-64 195
Msa1089600 AT3G54040.2 54.301 186 75 5 1 180 57 238 1.73e-63 196
Msa1089600 AT5G52390.1 44.571 175 95 1 7 179 8 182 4.96e-50 160

Find 53 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTTCTTCTCAGTAATTT+TGG 0.107847 7_3:+3238695 Msa1089600:exon
GTTCTCCAATTATCAAATTT+TGG 0.153493 7_3:+3238899 Msa1089600:three_prime_UTR
CAATTCCAAAATTTGATAAT+TGG 0.174956 7_3:-3238904 None:intergenic
AAAGGTATAGTTTGGGAAAA+TGG 0.222736 7_3:-3237151 None:intergenic
TTCTAAATAAAGGTATAGTT+TGG 0.253324 7_3:-3237159 None:intergenic
TTTCTCATCCATGCATCTTT+AGG 0.256802 7_3:+3237229 Msa1089600:CDS
AAGAAAAGGTCAACAATGTT+AGG 0.281319 7_3:-3237676 None:intergenic
TTGTGTTTCTCACATAGTTC+TGG 0.298056 7_3:-3238571 None:intergenic
GTGAGCTCCGGAGCTGCATT+TGG 0.320930 7_3:+3238625 Msa1089600:CDS
AAAATGGAGAAAATATATTT+AGG 0.323325 7_3:-3237135 None:intergenic
TTTGGAATTGTTTCTGCTCT+TGG 0.349280 7_3:+3238917 Msa1089600:three_prime_UTR
AAAGACATGGTTCTAAATAA+AGG 0.352345 7_3:-3237169 None:intergenic
TTTCTCAACAAAATTATCAT+TGG 0.381811 7_3:+3237189 Msa1089600:CDS
GATATATAGAGGGAAATATA+TGG 0.386461 7_3:+3238780 Msa1089600:three_prime_UTR
ATCTGGAAAGAGATGTTTGT+TGG 0.389390 7_3:+3237447 Msa1089600:CDS
TCTAAATAAAGGTATAGTTT+GGG 0.400681 7_3:-3237158 None:intergenic
TGTTTGTTGGAGACTCAAAA+AGG 0.420286 7_3:+3237460 Msa1089600:CDS
TGTAATAATCAAGTTGAGTT+GGG 0.422661 7_3:+3238833 Msa1089600:three_prime_UTR
ACTTTCTCAGTAGCTTCATC+TGG 0.424996 7_3:+3237430 Msa1089600:CDS
GAGAAAGTACACACTTCCTT+TGG 0.445012 7_3:-3237415 None:intergenic
AGCGGGGCCAAATGCAGCTC+CGG 0.448289 7_3:-3238632 None:intergenic
CAGCAGCCATATTGAAGAAA+AGG 0.460023 7_3:-3237690 None:intergenic
CTCCAAAATTACTGAGAAGA+AGG 0.460297 7_3:-3238697 None:intergenic
GAAAATATATTTAGGAAAGA+AGG 0.461402 7_3:-3237127 None:intergenic
TTCTTTGAGCCACAATTCAC+TGG 0.461563 7_3:+3237619 Msa1089600:CDS
TTCAATATGGCTGCTGGAGA+GGG 0.471243 7_3:+3237697 Msa1089600:CDS
TCCTCTGAAACTGAAGAAGC+GGG 0.487005 7_3:-3238649 None:intergenic
CTATAGTAGAGGATATATAG+AGG 0.488277 7_3:+3238769 Msa1089600:three_prime_UTR
TAGAACATCTGAAGTTATAG+TGG 0.488747 7_3:+3237510 Msa1089600:CDS
ATGTAATAATCAAGTTGAGT+TGG 0.497257 7_3:+3238832 Msa1089600:three_prime_UTR
CTTCAATATGGCTGCTGGAG+AGG 0.505716 7_3:+3237696 Msa1089600:CDS
ATGGTCGAGCTTGTGAGCTC+CGG 0.514705 7_3:+3238613 Msa1089600:CDS
CCCCGCTTCTTCAGTTTCAG+AGG 0.514848 7_3:+3238648 Msa1089600:CDS
AGAAAAGGTCAACAATGTTA+GGG 0.524892 7_3:-3237675 None:intergenic
TGAGAAGAAGGTGCAGCTGC+AGG 0.526134 7_3:-3238685 None:intergenic
GACCAACCCTCGTCGTGCTA+TGG 0.530876 7_3:+3238594 Msa1089600:CDS
GTCCTCTGAAACTGAAGAAG+CGG 0.537628 7_3:-3238650 None:intergenic
TCCTATGTTTACTATAGTAG+AGG 0.567624 7_3:+3238758 Msa1089600:three_prime_UTR
AATACATACCTAAAGATGCA+TGG 0.573736 7_3:-3237237 None:intergenic
TATAGTAGAGGATATATAGA+GGG 0.575325 7_3:+3238770 Msa1089600:three_prime_UTR
GACCATAGCACGACGAGGGT+TGG 0.575610 7_3:-3238596 None:intergenic
TGCAGCTGAAATGGCATGTG+AGG 0.589265 7_3:+3237387 Msa1089600:intron
TCCTCTACTATAGTAAACAT+AGG 0.591635 7_3:-3238759 None:intergenic
CAAAGTTTGCCAGTGAATTG+TGG 0.594692 7_3:-3237628 None:intergenic
CACCACATGCTTCCACACAT+TGG 0.599473 7_3:-3237561 None:intergenic
GGTGTTGATAGAAGTTCTGT+TGG 0.610517 7_3:+3237580 Msa1089600:CDS
TCAAAACAAATTCAATAACA+AGG 0.649748 7_3:-3238806 None:intergenic
GGCATGTGAGGACTTACCAA+AGG 0.656235 7_3:+3237399 Msa1089600:CDS
AGCTCGACCATAGCACGACG+AGG 0.664011 7_3:-3238601 None:intergenic
CATTGAGACAGACCAATGTG+TGG 0.673666 7_3:+3237549 Msa1089600:CDS
GCTCGACCATAGCACGACGA+GGG 0.698174 7_3:-3238600 None:intergenic
CCTCTGAAACTGAAGAAGCG+GGG 0.706772 7_3:-3238648 None:intergenic
GACCAATGTGTGGAAGCATG+TGG 0.721045 7_3:+3237559 Msa1089600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATATAATTATATGTGT+TGG + chr7_3:3237894-3237913 Msa1089600:intron 10.0%
!!! CATATTGATTTTTTTTTAAT+CGG - chr7_3:3238038-3238057 None:intergenic 10.0%
!!! TTTGAAGTTAAAATATTTTA+TGG - chr7_3:3238350-3238369 None:intergenic 10.0%
!! TTTAATATAATTATATGTGT+TGG + chr7_3:3237894-3237913 Msa1089600:intron 10.0%
!!! CATATTGATTTTTTTTTAAT+CGG - chr7_3:3238038-3238057 None:intergenic 10.0%
!!! TTTGAAGTTAAAATATTTTA+TGG - chr7_3:3238350-3238369 None:intergenic 10.0%
!! AAAATGGAGAAAATATATTT+AGG - chr7_3:3237138-3237157 None:intergenic 15.0%
!!! GATTTTTTTCAAATTATTAG+TGG - chr7_3:3237868-3237887 None:intergenic 15.0%
!! AAAAAAAAAAAATGTAACCT+AGG + chr7_3:3238423-3238442 Msa1089600:intron 15.0%
!! AAAATGGAGAAAATATATTT+AGG - chr7_3:3237138-3237157 None:intergenic 15.0%
!!! GATTTTTTTCAAATTATTAG+TGG - chr7_3:3237868-3237887 None:intergenic 15.0%
!! AAAAAAAAAAAATGTAACCT+AGG + chr7_3:3238423-3238442 Msa1089600:intron 15.0%
!! GAAAATATATTTAGGAAAGA+AGG - chr7_3:3237130-3237149 None:intergenic 20.0%
!!! TCTAAATAAAGGTATAGTTT+GGG - chr7_3:3237161-3237180 None:intergenic 20.0%
!!! TTCTAAATAAAGGTATAGTT+TGG - chr7_3:3237162-3237181 None:intergenic 20.0%
!! TTTCTCAACAAAATTATCAT+TGG + chr7_3:3237189-3237208 Msa1089600:CDS 20.0%
!!! TTAGTTGTTCATTTTTTTCT+TGG + chr7_3:3237320-3237339 Msa1089600:intron 20.0%
!! ATTGTTGATATTGGAAAATT+TGG - chr7_3:3238115-3238134 None:intergenic 20.0%
!!! TTTTCCAATATCAACAATTT+TGG + chr7_3:3238117-3238136 Msa1089600:intron 20.0%
!!! TTTAACTTCAAATCTAATCA+AGG + chr7_3:3238358-3238377 Msa1089600:intron 20.0%
!! TAGAAAATAAACAAATTCCT+AGG - chr7_3:3238443-3238462 None:intergenic 20.0%
!! TCAAAACAAATTCAATAACA+AGG - chr7_3:3238809-3238828 None:intergenic 20.0%
!!! CAATTCCAAAATTTGATAAT+TGG - chr7_3:3238907-3238926 None:intergenic 20.0%
!! GAAAATATATTTAGGAAAGA+AGG - chr7_3:3237130-3237149 None:intergenic 20.0%
!!! TCTAAATAAAGGTATAGTTT+GGG - chr7_3:3237161-3237180 None:intergenic 20.0%
!!! TTCTAAATAAAGGTATAGTT+TGG - chr7_3:3237162-3237181 None:intergenic 20.0%
!! TTTCTCAACAAAATTATCAT+TGG + chr7_3:3237189-3237208 Msa1089600:CDS 20.0%
!!! TTAGTTGTTCATTTTTTTCT+TGG + chr7_3:3237320-3237339 Msa1089600:intron 20.0%
!! ATTGTTGATATTGGAAAATT+TGG - chr7_3:3238115-3238134 None:intergenic 20.0%
!!! TTTTCCAATATCAACAATTT+TGG + chr7_3:3238117-3238136 Msa1089600:intron 20.0%
!!! TTTAACTTCAAATCTAATCA+AGG + chr7_3:3238358-3238377 Msa1089600:intron 20.0%
!! TAGAAAATAAACAAATTCCT+AGG - chr7_3:3238443-3238462 None:intergenic 20.0%
!! TCAAAACAAATTCAATAACA+AGG - chr7_3:3238809-3238828 None:intergenic 20.0%
!!! CAATTCCAAAATTTGATAAT+TGG - chr7_3:3238907-3238926 None:intergenic 20.0%
!!! AAAGACATGGTTCTAAATAA+AGG - chr7_3:3237172-3237191 None:intergenic 25.0%
!! TAATTTTGTTGAGAAAGACA+TGG - chr7_3:3237185-3237204 None:intergenic 25.0%
! AGTTGTGTCTAAATTACAAT+AGG + chr7_3:3237775-3237794 Msa1089600:intron 25.0%
!! TTAAACTATTCTAGAGAAAC+CGG - chr7_3:3238003-3238022 None:intergenic 25.0%
! TTCTTTAATTCTTCTATGCA+AGG + chr7_3:3238198-3238217 Msa1089600:intron 25.0%
!! TAAACATTGCTCTAAATGTA+AGG - chr7_3:3238271-3238290 None:intergenic 25.0%
!!! TCTCCTTATGTTTTGTTAAT+TGG + chr7_3:3238499-3238518 Msa1089600:intron 25.0%
! ATGCCAATTAACAAAACATA+AGG - chr7_3:3238505-3238524 None:intergenic 25.0%
! TATAGTAGAGGATATATAGA+GGG + chr7_3:3238770-3238789 Msa1089600:three_prime_UTR 25.0%
! GATATATAGAGGGAAATATA+TGG + chr7_3:3238780-3238799 Msa1089600:three_prime_UTR 25.0%
!!! ATGTAATAATCAAGTTGAGT+TGG + chr7_3:3238832-3238851 Msa1089600:three_prime_UTR 25.0%
!!! TGTAATAATCAAGTTGAGTT+GGG + chr7_3:3238833-3238852 Msa1089600:three_prime_UTR 25.0%
!! GTTCTCCAATTATCAAATTT+TGG + chr7_3:3238899-3238918 Msa1089600:three_prime_UTR 25.0%
!!! AAAGACATGGTTCTAAATAA+AGG - chr7_3:3237172-3237191 None:intergenic 25.0%
!! TAATTTTGTTGAGAAAGACA+TGG - chr7_3:3237185-3237204 None:intergenic 25.0%
! AGTTGTGTCTAAATTACAAT+AGG + chr7_3:3237775-3237794 Msa1089600:intron 25.0%
!! TTAAACTATTCTAGAGAAAC+CGG - chr7_3:3238003-3238022 None:intergenic 25.0%
! TTCTTTAATTCTTCTATGCA+AGG + chr7_3:3238198-3238217 Msa1089600:intron 25.0%
!! TAAACATTGCTCTAAATGTA+AGG - chr7_3:3238271-3238290 None:intergenic 25.0%
!!! TCTCCTTATGTTTTGTTAAT+TGG + chr7_3:3238499-3238518 Msa1089600:intron 25.0%
! ATGCCAATTAACAAAACATA+AGG - chr7_3:3238505-3238524 None:intergenic 25.0%
! TATAGTAGAGGATATATAGA+GGG + chr7_3:3238770-3238789 Msa1089600:three_prime_UTR 25.0%
! GATATATAGAGGGAAATATA+TGG + chr7_3:3238780-3238799 Msa1089600:three_prime_UTR 25.0%
!!! ATGTAATAATCAAGTTGAGT+TGG + chr7_3:3238832-3238851 Msa1089600:three_prime_UTR 25.0%
!!! TGTAATAATCAAGTTGAGTT+GGG + chr7_3:3238833-3238852 Msa1089600:three_prime_UTR 25.0%
!! GTTCTCCAATTATCAAATTT+TGG + chr7_3:3238899-3238918 Msa1089600:three_prime_UTR 25.0%
TAGGAAAGAAGGACTAAAAA+TGG - chr7_3:3237119-3237138 None:intergenic 30.0%
! AAAGGTATAGTTTGGGAAAA+TGG - chr7_3:3237154-3237173 None:intergenic 30.0%
AATACATACCTAAAGATGCA+TGG - chr7_3:3237240-3237259 None:intergenic 30.0%
! ACAAATTTTTGCAGCTGAAA+TGG + chr7_3:3237378-3237397 Msa1089600:intron 30.0%
! TAGAACATCTGAAGTTATAG+TGG + chr7_3:3237510-3237529 Msa1089600:CDS 30.0%
AGAAAAGGTCAACAATGTTA+GGG - chr7_3:3237678-3237697 None:intergenic 30.0%
AAGAAAAGGTCAACAATGTT+AGG - chr7_3:3237679-3237698 None:intergenic 30.0%
! TGTTGACCTTTTCTTCAATA+TGG + chr7_3:3237684-3237703 Msa1089600:CDS 30.0%
! TCCAATATCAACAATTTTGG+AGG + chr7_3:3238120-3238139 Msa1089600:intron 30.0%
! ATTGCTCTAAATGTAAGGAA+AGG - chr7_3:3238266-3238285 None:intergenic 30.0%
CCTGTTGTCACATAAATTTA+AGG - chr7_3:3238541-3238560 None:intergenic 30.0%
CCTTAAATTTATGTGACAAC+AGG + chr7_3:3238538-3238557 Msa1089600:intron 30.0%
!! TCTCAGTAATTTTGGAGATA+TGG + chr7_3:3238703-3238722 Msa1089600:exon 30.0%
TCCTATGTTTACTATAGTAG+AGG + chr7_3:3238758-3238777 Msa1089600:three_prime_UTR 30.0%
TCCTCTACTATAGTAAACAT+AGG - chr7_3:3238762-3238781 None:intergenic 30.0%
CTATAGTAGAGGATATATAG+AGG + chr7_3:3238769-3238788 Msa1089600:three_prime_UTR 30.0%
TAGGAAAGAAGGACTAAAAA+TGG - chr7_3:3237119-3237138 None:intergenic 30.0%
! AAAGGTATAGTTTGGGAAAA+TGG - chr7_3:3237154-3237173 None:intergenic 30.0%
AATACATACCTAAAGATGCA+TGG - chr7_3:3237240-3237259 None:intergenic 30.0%
! ACAAATTTTTGCAGCTGAAA+TGG + chr7_3:3237378-3237397 Msa1089600:intron 30.0%
! TAGAACATCTGAAGTTATAG+TGG + chr7_3:3237510-3237529 Msa1089600:CDS 30.0%
AGAAAAGGTCAACAATGTTA+GGG - chr7_3:3237678-3237697 None:intergenic 30.0%
AAGAAAAGGTCAACAATGTT+AGG - chr7_3:3237679-3237698 None:intergenic 30.0%
! TGTTGACCTTTTCTTCAATA+TGG + chr7_3:3237684-3237703 Msa1089600:CDS 30.0%
! TCCAATATCAACAATTTTGG+AGG + chr7_3:3238120-3238139 Msa1089600:intron 30.0%
! ATTGCTCTAAATGTAAGGAA+AGG - chr7_3:3238266-3238285 None:intergenic 30.0%
CCTGTTGTCACATAAATTTA+AGG - chr7_3:3238541-3238560 None:intergenic 30.0%
CCTTAAATTTATGTGACAAC+AGG + chr7_3:3238538-3238557 Msa1089600:intron 30.0%
!! TCTCAGTAATTTTGGAGATA+TGG + chr7_3:3238703-3238722 Msa1089600:exon 30.0%
TCCTATGTTTACTATAGTAG+AGG + chr7_3:3238758-3238777 Msa1089600:three_prime_UTR 30.0%
TCCTCTACTATAGTAAACAT+AGG - chr7_3:3238762-3238781 None:intergenic 30.0%
CTATAGTAGAGGATATATAG+AGG + chr7_3:3238769-3238788 Msa1089600:three_prime_UTR 30.0%
TTTCTCATCCATGCATCTTT+AGG + chr7_3:3237229-3237248 Msa1089600:CDS 35.0%
ATCTGGAAAGAGATGTTTGT+TGG + chr7_3:3237447-3237466 Msa1089600:CDS 35.0%
! TGTTTGTTGGAGACTCAAAA+AGG + chr7_3:3237460-3237479 Msa1089600:CDS 35.0%
GTCAATATCTGTGTCATATC+AGG - chr7_3:3237836-3237855 None:intergenic 35.0%
TATGAATCATAGACACCCAT+CGG - chr7_3:3237972-3237991 None:intergenic 35.0%
TATGATTCATAGCAACTCAC+CGG + chr7_3:3237981-3238000 Msa1089600:intron 35.0%
GCCTCCAAAATTGTTGATAT+TGG - chr7_3:3238124-3238143 None:intergenic 35.0%
ACTTTCTTAGTGATTGTCGA+CGG - chr7_3:3238318-3238337 None:intergenic 35.0%
TTGTGTTTCTCACATAGTTC+TGG - chr7_3:3238574-3238593 None:intergenic 35.0%
! CACCTTCTTCTCAGTAATTT+TGG + chr7_3:3238695-3238714 Msa1089600:exon 35.0%
CTCCAAAATTACTGAGAAGA+AGG - chr7_3:3238700-3238719 None:intergenic 35.0%
!! TTTGGAATTGTTTCTGCTCT+TGG + chr7_3:3238917-3238936 Msa1089600:three_prime_UTR 35.0%
TTTCTCATCCATGCATCTTT+AGG + chr7_3:3237229-3237248 Msa1089600:CDS 35.0%
ATCTGGAAAGAGATGTTTGT+TGG + chr7_3:3237447-3237466 Msa1089600:CDS 35.0%
! TGTTTGTTGGAGACTCAAAA+AGG + chr7_3:3237460-3237479 Msa1089600:CDS 35.0%
GTCAATATCTGTGTCATATC+AGG - chr7_3:3237836-3237855 None:intergenic 35.0%
TATGAATCATAGACACCCAT+CGG - chr7_3:3237972-3237991 None:intergenic 35.0%
TATGATTCATAGCAACTCAC+CGG + chr7_3:3237981-3238000 Msa1089600:intron 35.0%
GCCTCCAAAATTGTTGATAT+TGG - chr7_3:3238124-3238143 None:intergenic 35.0%
ACTTTCTTAGTGATTGTCGA+CGG - chr7_3:3238318-3238337 None:intergenic 35.0%
TTGTGTTTCTCACATAGTTC+TGG - chr7_3:3238574-3238593 None:intergenic 35.0%
! CACCTTCTTCTCAGTAATTT+TGG + chr7_3:3238695-3238714 Msa1089600:exon 35.0%
CTCCAAAATTACTGAGAAGA+AGG - chr7_3:3238700-3238719 None:intergenic 35.0%
!! TTTGGAATTGTTTCTGCTCT+TGG + chr7_3:3238917-3238936 Msa1089600:three_prime_UTR 35.0%
! GAGAAAGTACACACTTCCTT+TGG - chr7_3:3237418-3237437 None:intergenic 40.0%
ACTTTCTCAGTAGCTTCATC+TGG + chr7_3:3237430-3237449 Msa1089600:CDS 40.0%
!! GAGACTCAAAAAGGTGTCAA+TGG + chr7_3:3237469-3237488 Msa1089600:CDS 40.0%
!! GGTGTTGATAGAAGTTCTGT+TGG + chr7_3:3237580-3237599 Msa1089600:CDS 40.0%
TTCTTTGAGCCACAATTCAC+TGG + chr7_3:3237619-3237638 Msa1089600:CDS 40.0%
CAAAGTTTGCCAGTGAATTG+TGG - chr7_3:3237631-3237650 None:intergenic 40.0%
CAGCAGCCATATTGAAGAAA+AGG - chr7_3:3237693-3237712 None:intergenic 40.0%
! CTTTTCTTCAATATGGCTGC+TGG + chr7_3:3237691-3237710 Msa1089600:CDS 40.0%
GATTAGATGTGTCCTGATGT+TGG - chr7_3:3237950-3237969 None:intergenic 40.0%
! GAGAAAGTACACACTTCCTT+TGG - chr7_3:3237418-3237437 None:intergenic 40.0%
ACTTTCTCAGTAGCTTCATC+TGG + chr7_3:3237430-3237449 Msa1089600:CDS 40.0%
!! GAGACTCAAAAAGGTGTCAA+TGG + chr7_3:3237469-3237488 Msa1089600:CDS 40.0%
!! GGTGTTGATAGAAGTTCTGT+TGG + chr7_3:3237580-3237599 Msa1089600:CDS 40.0%
TTCTTTGAGCCACAATTCAC+TGG + chr7_3:3237619-3237638 Msa1089600:CDS 40.0%
CAAAGTTTGCCAGTGAATTG+TGG - chr7_3:3237631-3237650 None:intergenic 40.0%
CAGCAGCCATATTGAAGAAA+AGG - chr7_3:3237693-3237712 None:intergenic 40.0%
! CTTTTCTTCAATATGGCTGC+TGG + chr7_3:3237691-3237710 Msa1089600:CDS 40.0%
GATTAGATGTGTCCTGATGT+TGG - chr7_3:3237950-3237969 None:intergenic 40.0%
CATTGAGACAGACCAATGTG+TGG + chr7_3:3237549-3237568 Msa1089600:CDS 45.0%
!! GGGCACTTTTTGTAACAAGC+TGG - chr7_3:3237658-3237677 None:intergenic 45.0%
TTCAATATGGCTGCTGGAGA+GGG + chr7_3:3237697-3237716 Msa1089600:CDS 45.0%
TCAGGACACATCTAATCCGA+TGG + chr7_3:3237953-3237972 Msa1089600:intron 45.0%
CAGGACACATCTAATCCGAT+GGG + chr7_3:3237954-3237973 Msa1089600:intron 45.0%
!! TCCTCTGAAACTGAAGAAGC+GGG - chr7_3:3238652-3238671 None:intergenic 45.0%
!! GTCCTCTGAAACTGAAGAAG+CGG - chr7_3:3238653-3238672 None:intergenic 45.0%
CATTGAGACAGACCAATGTG+TGG + chr7_3:3237549-3237568 Msa1089600:CDS 45.0%
!! GGGCACTTTTTGTAACAAGC+TGG - chr7_3:3237658-3237677 None:intergenic 45.0%
TTCAATATGGCTGCTGGAGA+GGG + chr7_3:3237697-3237716 Msa1089600:CDS 45.0%
TCAGGACACATCTAATCCGA+TGG + chr7_3:3237953-3237972 Msa1089600:intron 45.0%
CAGGACACATCTAATCCGAT+GGG + chr7_3:3237954-3237973 Msa1089600:intron 45.0%
!! TCCTCTGAAACTGAAGAAGC+GGG - chr7_3:3238652-3238671 None:intergenic 45.0%
!! GTCCTCTGAAACTGAAGAAG+CGG - chr7_3:3238653-3238672 None:intergenic 45.0%
!!! AATATATAATTTTAATGTTT+TGG - chr7_3:3238739-3238758 None:intergenic 5.0%
!!! AATATATAATTTTAATGTTT+TGG - chr7_3:3238739-3238758 None:intergenic 5.0%
TGCAGCTGAAATGGCATGTG+AGG + chr7_3:3237387-3237406 Msa1089600:intron 50.0%
GGCATGTGAGGACTTACCAA+AGG + chr7_3:3237399-3237418 Msa1089600:CDS 50.0%
! GACCAATGTGTGGAAGCATG+TGG + chr7_3:3237559-3237578 Msa1089600:CDS 50.0%
CACCACATGCTTCCACACAT+TGG - chr7_3:3237564-3237583 None:intergenic 50.0%
CTTCAATATGGCTGCTGGAG+AGG + chr7_3:3237696-3237715 Msa1089600:CDS 50.0%
CACGACACAGATCCAACATC+AGG + chr7_3:3237935-3237954 Msa1089600:intron 50.0%
TCTTAGTGATTGTCGACGGC+AGG - chr7_3:3238314-3238333 None:intergenic 50.0%
!! CCTCTGAAACTGAAGAAGCG+GGG - chr7_3:3238651-3238670 None:intergenic 50.0%
TGCAGCTGAAATGGCATGTG+AGG + chr7_3:3237387-3237406 Msa1089600:intron 50.0%
GGCATGTGAGGACTTACCAA+AGG + chr7_3:3237399-3237418 Msa1089600:CDS 50.0%
! GACCAATGTGTGGAAGCATG+TGG + chr7_3:3237559-3237578 Msa1089600:CDS 50.0%
CACCACATGCTTCCACACAT+TGG - chr7_3:3237564-3237583 None:intergenic 50.0%
CTTCAATATGGCTGCTGGAG+AGG + chr7_3:3237696-3237715 Msa1089600:CDS 50.0%
CACGACACAGATCCAACATC+AGG + chr7_3:3237935-3237954 Msa1089600:intron 50.0%
TCTTAGTGATTGTCGACGGC+AGG - chr7_3:3238314-3238333 None:intergenic 50.0%
!! CCTCTGAAACTGAAGAAGCG+GGG - chr7_3:3238651-3238670 None:intergenic 50.0%
ATGGTCGAGCTTGTGAGCTC+CGG + chr7_3:3238613-3238632 Msa1089600:CDS 55.0%
CCCCGCTTCTTCAGTTTCAG+AGG + chr7_3:3238648-3238667 Msa1089600:CDS 55.0%
! TGAGAAGAAGGTGCAGCTGC+AGG - chr7_3:3238688-3238707 None:intergenic 55.0%
ATGGTCGAGCTTGTGAGCTC+CGG + chr7_3:3238613-3238632 Msa1089600:CDS 55.0%
CCCCGCTTCTTCAGTTTCAG+AGG + chr7_3:3238648-3238667 Msa1089600:CDS 55.0%
! TGAGAAGAAGGTGCAGCTGC+AGG - chr7_3:3238688-3238707 None:intergenic 55.0%
GACCAACCCTCGTCGTGCTA+TGG + chr7_3:3238594-3238613 Msa1089600:CDS 60.0%
GACCATAGCACGACGAGGGT+TGG - chr7_3:3238599-3238618 None:intergenic 60.0%
GCTCGACCATAGCACGACGA+GGG - chr7_3:3238603-3238622 None:intergenic 60.0%
AGCTCGACCATAGCACGACG+AGG - chr7_3:3238604-3238623 None:intergenic 60.0%
GTGAGCTCCGGAGCTGCATT+TGG + chr7_3:3238625-3238644 Msa1089600:CDS 60.0%
GACCAACCCTCGTCGTGCTA+TGG + chr7_3:3238594-3238613 Msa1089600:CDS 60.0%
GACCATAGCACGACGAGGGT+TGG - chr7_3:3238599-3238618 None:intergenic 60.0%
GCTCGACCATAGCACGACGA+GGG - chr7_3:3238603-3238622 None:intergenic 60.0%
AGCTCGACCATAGCACGACG+AGG - chr7_3:3238604-3238623 None:intergenic 60.0%
GTGAGCTCCGGAGCTGCATT+TGG + chr7_3:3238625-3238644 Msa1089600:CDS 60.0%
AGCGGGGCCAAATGCAGCTC+CGG - chr7_3:3238635-3238654 None:intergenic 65.0%
AGCGGGGCCAAATGCAGCTC+CGG - chr7_3:3238635-3238654 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 3237048 3238997 3237048 ID=Msa1089600;Name=Msa1089600
chr7_3 mRNA 3237048 3238997 3237048 ID=Msa1089600-mRNA-1;Parent=Msa1089600;Name=Msa1089600-mRNA-1;_AED=0.07;_eAED=0.07;_QI=136|1|1|1|1|0.66|3|286|181
chr7_3 exon 3237048 3237250 3237048 ID=Msa1089600-mRNA-1:exon:1243;Parent=Msa1089600-mRNA-1
chr7_3 exon 3237392 3237718 3237392 ID=Msa1089600-mRNA-1:exon:1244;Parent=Msa1089600-mRNA-1
chr7_3 exon 3238560 3238997 3238560 ID=Msa1089600-mRNA-1:exon:1245;Parent=Msa1089600-mRNA-1
chr7_3 five_prime_UTR 3237048 3237183 3237048 ID=Msa1089600-mRNA-1:five_prime_utr;Parent=Msa1089600-mRNA-1
chr7_3 CDS 3237184 3237250 3237184 ID=Msa1089600-mRNA-1:cds;Parent=Msa1089600-mRNA-1
chr7_3 CDS 3237392 3237718 3237392 ID=Msa1089600-mRNA-1:cds;Parent=Msa1089600-mRNA-1
chr7_3 CDS 3238560 3238711 3238560 ID=Msa1089600-mRNA-1:cds;Parent=Msa1089600-mRNA-1
chr7_3 three_prime_UTR 3238712 3238997 3238712 ID=Msa1089600-mRNA-1:three_prime_utr;Parent=Msa1089600-mRNA-1
Gene Sequence

>Msa1089600

ATGTCTTTCTCAACAAAATTATCATTGGTTTTATTACTTTCTTCTTTTCTCATCCATGCATCTTTAGCTGAAATGGCATGTGAGGACTTACCAAAGGAAGTGTGTACTTTCTCAGTAGCTTCATCTGGAAAGAGATGTTTGTTGGAGACTCAAAAAGGTGTCAATGGTGAAATTGAGTATCAATGTAGAACATCTGAAGTTATAGTGGAGAGAATATCAGAATACATTGAGACAGACCAATGTGTGGAAGCATGTGGTGTTGATAGAAGTTCTGTTGGTATTTCATCTGATGCTTTCTTTGAGCCACAATTCACTGGCAAACTTTGCTCACCAGCTTGTTACAAAAAGTGCCCTAACATTGTTGACCTTTTCTTCAATATGGCTGCTGGAGAGGGAGTATTTTTACCAGAACTATGTGAGAAACACAAGACCAACCCTCGTCGTGCTATGGTCGAGCTTGTGAGCTCCGGAGCTGCATTTGGCCCCGCTTCTTCAGTTTCAGAGGACATTGTGTTAGCACCTGCAGCTGCACCTTCTTCTCAGTAA
Protein sequence

>Msa1089600

MSFSTKLSLVLLLSSFLIHASLAEMACEDLPKEVCTFSVASSGKRCLLETQKGVNGEIEYQCRTSEVIVERISEYIETDQCVEACGVDRSSVGISSDAFFEPQFTGKLCSPACYKKCPNIVDLFFNMAAGEGVFLPELCEKHKTNPRRAMVELVSSGAAFGPASSVSEDIVLAPAAAPSSQ*