Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590390 | XP_003604797.1 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 4.45e-125 | 359 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000820 | Msa0590390 | 0.806600 | 7.604396e-50 | -8.615850e-47 |
| Msa0004480 | Msa0590390 | 0.818217 | 2.200067e-52 | -8.615850e-47 |
| Msa0022470 | Msa0590390 | 0.813877 | 2.049422e-51 | -8.615850e-47 |
| Msa0046170 | Msa0590390 | 0.813084 | 3.060496e-51 | -8.615850e-47 |
| Msa0059900 | Msa0590390 | 0.815985 | 6.981403e-52 | -8.615850e-47 |
| Msa0071470 | Msa0590390 | 0.806665 | 7.368575e-50 | -8.615850e-47 |
| Msa0078150 | Msa0590390 | 0.825952 | 3.540379e-54 | -8.615850e-47 |
| Msa0090090 | Msa0590390 | 0.805516 | 1.285546e-49 | -8.615850e-47 |
| Msa0090380 | Msa0590390 | 0.869182 | 3.751300e-66 | -8.615850e-47 |
| Msa0092970 | Msa0590390 | 0.809251 | 2.075507e-50 | -8.615850e-47 |
| Msa0104810 | Msa0590390 | 0.843970 | 1.009620e-58 | -8.615850e-47 |
| Msa0119430 | Msa0590390 | 0.825341 | 4.941538e-54 | -8.615850e-47 |
| Msa0137560 | Msa0590390 | 0.801029 | 1.091800e-48 | -8.615850e-47 |
| Msa0137860 | Msa0590390 | 0.864122 | 1.525701e-64 | -8.615850e-47 |
| Msa0139530 | Msa0590390 | 0.803177 | 3.947192e-49 | -8.615850e-47 |
| Msa0151170 | Msa0590390 | 0.801277 | 9.713962e-49 | -8.615850e-47 |
| Msa0162690 | Msa0590390 | 0.805695 | 1.178956e-49 | -8.615850e-47 |
| Msa0170600 | Msa0590390 | 0.840218 | 9.922965e-58 | -8.615850e-47 |
| Msa0170770 | Msa0590390 | 0.852729 | 3.813123e-61 | -8.615850e-47 |
| Msa0176260 | Msa0590390 | 0.805688 | 1.183070e-49 | -8.615850e-47 |
| Msa0187310 | Msa0590390 | 0.812763 | 3.598794e-51 | -8.615850e-47 |
| Msa0224130 | Msa0590390 | 0.831760 | 1.390501e-55 | -8.615850e-47 |
| Msa0393100 | Msa0590390 | 0.827213 | 1.771730e-54 | -8.615850e-47 |
| Msa0430240 | Msa0590390 | 0.803561 | 3.287559e-49 | -8.615850e-47 |
| Msa0441260 | Msa0590390 | 0.800260 | 1.566980e-48 | -8.615850e-47 |
| Msa0443450 | Msa0590390 | 0.834256 | 3.329276e-56 | -8.615850e-47 |
| Msa0476770 | Msa0590390 | 0.818037 | 2.415734e-52 | -8.615850e-47 |
| Msa0260520 | Msa0590390 | 0.801425 | 9.057290e-49 | -8.615850e-47 |
| Msa0260530 | Msa0590390 | 0.804635 | 1.965519e-49 | -8.615850e-47 |
| Msa0264680 | Msa0590390 | 0.854331 | 1.322100e-61 | -8.615850e-47 |
| Msa0265270 | Msa0590390 | 0.831837 | 1.331115e-55 | -8.615850e-47 |
| Msa0276430 | Msa0590390 | 0.809616 | 1.732860e-50 | -8.615850e-47 |
| Msa0302730 | Msa0590390 | 0.850702 | 1.431521e-60 | -8.615850e-47 |
| Msa0306310 | Msa0590390 | 0.815112 | 1.092132e-51 | -8.615850e-47 |
| Msa0316470 | Msa0590390 | 0.813127 | 2.995008e-51 | -8.615850e-47 |
| Msa0345980 | Msa0590390 | 0.820259 | 7.540177e-53 | -8.615850e-47 |
| Msa0484800 | Msa0590390 | 0.850790 | 1.352208e-60 | -8.615850e-47 |
| Msa0485160 | Msa0590390 | 0.911557 | 5.315271e-83 | -8.615850e-47 |
| Msa0488580 | Msa0590390 | 0.841233 | 5.378806e-58 | -8.615850e-47 |
| Msa0521130 | Msa0590390 | 0.813606 | 2.350462e-51 | -8.615850e-47 |
| Msa0534270 | Msa0590390 | 0.865978 | 3.987251e-65 | -8.615850e-47 |
| Msa0534870 | Msa0590390 | 0.802487 | 5.480981e-49 | -8.615850e-47 |
| Msa0584600 | Msa0590390 | 0.806597 | 7.613396e-50 | -8.615850e-47 |
| Msa0590390 | Msa0592650 | 0.801925 | 7.153010e-49 | -8.615850e-47 |
| Msa0590390 | Msa0604570 | 0.822493 | 2.300582e-53 | -8.615850e-47 |
| Msa0590390 | Msa0613150 | 0.801791 | 7.622263e-49 | -8.615850e-47 |
| Msa0590390 | Msa0613300 | 0.804258 | 2.354920e-49 | -8.615850e-47 |
| Msa0590390 | Msa0615210 | 0.827915 | 1.201725e-54 | -8.615850e-47 |
| Msa0590390 | Msa0631320 | 0.805523 | 1.281006e-49 | -8.615850e-47 |
| Msa0590390 | Msa0635270 | 0.800985 | 1.114431e-48 | -8.615850e-47 |
| Msa0590390 | Msa0646240 | 0.818230 | 2.185191e-52 | -8.615850e-47 |
| Msa0590390 | Msa0662580 | 0.816303 | 5.926855e-52 | -8.615850e-47 |
| Msa0590390 | Msa0685240 | 0.820313 | 7.327174e-53 | -8.615850e-47 |
| Msa0590390 | Msa0696100 | 0.807955 | 3.925758e-50 | -8.615850e-47 |
| Msa0590390 | Msa0753930 | 0.800792 | 1.220423e-48 | -8.615850e-47 |
| Msa0590390 | Msa0769720 | 0.807334 | 5.316934e-50 | -8.615850e-47 |
| Msa0590390 | Msa0804870 | 0.802500 | 5.447136e-49 | -8.615850e-47 |
| Msa0590390 | Msa0829050 | 0.808668 | 2.766124e-50 | -8.615850e-47 |
| Msa0590390 | Msa0838870 | 0.800240 | 1.581333e-48 | -8.615850e-47 |
| Msa0590390 | Msa0945130 | 0.861706 | 8.498165e-64 | -8.615850e-47 |
| Msa0590390 | Msa1030200 | 0.828310 | 9.655274e-55 | -8.615850e-47 |
| Msa0590390 | Msa1034450 | 0.809357 | 1.969193e-50 | -8.615850e-47 |
| Msa0590390 | Msa1069890 | 0.806492 | 8.011460e-50 | -8.615850e-47 |
| Msa0590390 | Msa1074200 | 0.809944 | 1.472817e-50 | -8.615850e-47 |
| Msa0590390 | Msa1089190 | 0.832216 | 1.072850e-55 | -8.615850e-47 |
| Msa0590390 | Msa1089600 | 0.913741 | 4.329028e-84 | -8.615850e-47 |
| Msa0590390 | Msa1109670 | 0.829046 | 6.407773e-55 | -8.615850e-47 |
| Msa0590390 | Msa1114670 | 0.824784 | 6.691653e-54 | -8.615850e-47 |
| Msa0590390 | Msa1120580 | 0.801924 | 7.158437e-49 | -8.615850e-47 |
| Msa0590390 | Msa1131790 | 0.847577 | 1.059180e-59 | -8.615850e-47 |
| Msa0590390 | Msa1153230 | 0.827527 | 1.489638e-54 | -8.615850e-47 |
| Msa0590390 | Msa1157110 | 0.814792 | 1.286530e-51 | -8.615850e-47 |
| Msa0590390 | Msa1157670 | 0.807210 | 5.649757e-50 | -8.615850e-47 |
| Msa0590390 | Msa1159170 | 0.822169 | 2.734869e-53 | -8.615850e-47 |
| Msa0590390 | Msa1181060 | 0.818510 | 1.888174e-52 | -8.615850e-47 |
| Msa0590390 | Msa1187490 | 0.821312 | 4.316979e-53 | -8.615850e-47 |
| Msa0590390 | Msa1218160 | 0.833702 | 4.581320e-56 | -8.615850e-47 |
| Msa0590390 | Msa1221220 | 0.805181 | 1.511178e-49 | -8.615850e-47 |
| Msa0590390 | Msa1221240 | 0.803510 | 3.367518e-49 | -8.615850e-47 |
| Msa0590390 | Msa1225580 | 0.861395 | 1.057158e-63 | -8.615850e-47 |
| Msa0590390 | Msa1246780 | 0.816380 | 5.698627e-52 | -8.615850e-47 |
| Msa0590390 | Msa1246790 | 0.832886 | 7.319624e-56 | -8.615850e-47 |
| Msa0590390 | Msa1286210 | 0.803213 | 3.881402e-49 | -8.615850e-47 |
| Msa0590390 | Msa1286220 | 0.825661 | 4.150698e-54 | -8.615850e-47 |
| Msa0590390 | Msa1334840 | 0.812353 | 4.423916e-51 | -8.615850e-47 |
| Msa0590390 | Msa1355510 | 0.856804 | 2.511170e-62 | -8.615850e-47 |
| Msa0590390 | Msa1362850 | 0.837203 | 5.971426e-57 | -8.615850e-47 |
| Msa0590390 | Msa1364080 | 0.830613 | 2.661520e-55 | -8.615850e-47 |
| Msa0590390 | Msa1369320 | 0.800879 | 1.171667e-48 | -8.615850e-47 |
| Msa0590390 | Msa1397390 | 0.808191 | 3.495649e-50 | -8.615850e-47 |
| Msa0590390 | Msa1398900 | 0.805626 | 1.219079e-49 | -8.615850e-47 |
| Msa0590390 | Msa1409690 | 0.800852 | 1.186329e-48 | -8.615850e-47 |
| Msa0590390 | Msa1413680 | 0.833455 | 5.280915e-56 | -8.615850e-47 |
| Msa0590390 | Msa1413800 | 0.853184 | 2.826647e-61 | -8.615850e-47 |
| Msa0590390 | Msa1420940 | 0.811683 | 6.194054e-51 | -8.615850e-47 |
| Msa0590390 | Msa1422230 | 0.818051 | 2.398435e-52 | -8.615850e-47 |
| Msa0590390 | Msa1433410 | 0.867051 | 1.819854e-65 | -8.615850e-47 |
| Msa0590390 | Msa1435320 | 0.818742 | 1.672358e-52 | -8.615850e-47 |
| Msa0590390 | Msa1436090 | 0.853177 | 2.838460e-61 | -8.615850e-47 |
| Msa0590390 | Msa1443400 | 0.818638 | 1.765530e-52 | -8.615850e-47 |
| Msa0590390 | Msa1443620 | 0.857189 | 1.933281e-62 | -8.615850e-47 |
| Msa0590390 | Msa1443640 | 0.815632 | 8.370431e-52 | -8.615850e-47 |
| Msa0590390 | Msa1448040 | 0.818702 | 1.707996e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590390 | MtrunA17_Chr4g0008141 | 98.333 | 180 | 3 | 0 | 1 | 180 | 1 | 180 | 4.09e-129 | 359 |
| Msa0590390 | MtrunA17_Chr4g0008131 | 84.024 | 169 | 27 | 0 | 1 | 169 | 1 | 169 | 4.03e-105 | 300 |
| Msa0590390 | MtrunA17_Chr4g0008121 | 81.564 | 179 | 33 | 0 | 1 | 179 | 1 | 179 | 7.13e-101 | 289 |
| Msa0590390 | MtrunA17_Chr7g0241061 | 68.539 | 178 | 56 | 0 | 1 | 178 | 1 | 178 | 4.17e-90 | 261 |
| Msa0590390 | MtrunA17_Chr6g0472041 | 52.201 | 159 | 74 | 2 | 9 | 165 | 5 | 163 | 4.27e-57 | 177 |
| Msa0590390 | MtrunA17_Chr1g0203171 | 54.248 | 153 | 69 | 1 | 15 | 166 | 18 | 170 | 5.80e-57 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590390 | AT3G54040.1 | 54.011 | 187 | 76 | 5 | 1 | 181 | 1 | 183 | 1.03e-63 | 194 |
| Msa0590390 | AT3G54040.2 | 54.011 | 187 | 76 | 5 | 1 | 181 | 57 | 239 | 3.15e-63 | 195 |
| Msa0590390 | AT5G52390.1 | 43.956 | 182 | 93 | 2 | 7 | 179 | 1 | 182 | 1.55e-50 | 161 |
Find 54 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCTTCTTCTCAGTAATTT+TGG | 0.107847 | 4_2:-13854181 | Msa0590390:exon |
| GTTCTCCAATTATCAAATTT+TGG | 0.153493 | 4_2:-13853977 | Msa0590390:three_prime_UTR |
| CAATTCCAAAATTTGATAAT+TGG | 0.174956 | 4_2:+13853972 | None:intergenic |
| AAAGGTATAGTTTGGGAAAA+TGG | 0.222736 | 4_2:+13855814 | None:intergenic |
| TTCTAAATAAAGGTATAGTT+TGG | 0.253324 | 4_2:+13855806 | None:intergenic |
| TTTCTCATCCATGCATCTTT+AGG | 0.256802 | 4_2:-13855736 | Msa0590390:intron |
| AAAATGGAGAAGTTGTATTT+AGG | 0.267495 | 4_2:+13855830 | None:intergenic |
| AAGAAAAGGTCAACAATGTT+AGG | 0.281319 | 4_2:+13855241 | None:intergenic |
| TTGTGTTTCTCACATAGTTC+TGG | 0.298056 | 4_2:+13854305 | None:intergenic |
| GTGAGCTCCGGAGCTGCATT+TGG | 0.320930 | 4_2:-13854251 | Msa0590390:CDS |
| TTTGGAATTGTTTCTGCTCT+TGG | 0.349280 | 4_2:-13853959 | Msa0590390:three_prime_UTR |
| TTTCTCAAGCAAACTATCAT+TGG | 0.351663 | 4_2:-13855776 | Msa0590390:CDS |
| AAAGACATGGTTCTAAATAA+AGG | 0.352345 | 4_2:+13855796 | None:intergenic |
| GATATATAGAGGGAAATATA+TGG | 0.386461 | 4_2:-13854096 | Msa0590390:three_prime_UTR |
| ATCTGGAAAGAGATGTTTGT+TGG | 0.389390 | 4_2:-13855470 | Msa0590390:CDS |
| GAAGTTGTATTTAGGAAAGA+AGG | 0.394771 | 4_2:+13855838 | None:intergenic |
| TCTAAATAAAGGTATAGTTT+GGG | 0.400681 | 4_2:+13855807 | None:intergenic |
| TGTTTGTTGGAGACTCAAAA+AGG | 0.420286 | 4_2:-13855457 | Msa0590390:CDS |
| TGTAATAATCAAGTTGAGTT+GGG | 0.422661 | 4_2:-13854043 | Msa0590390:three_prime_UTR |
| ACTTTCTCAGTAGCTTCATC+TGG | 0.424996 | 4_2:-13855487 | Msa0590390:CDS |
| GAGAAAGTACACACTTCCTT+TGG | 0.445012 | 4_2:+13855502 | None:intergenic |
| AGCGGGGCCAAATGCAGCTC+CGG | 0.448289 | 4_2:+13854244 | None:intergenic |
| CAGCAGCCATATTGAAGAAA+AGG | 0.460023 | 4_2:+13855227 | None:intergenic |
| CTCCAAAATTACTGAGAAGA+AGG | 0.460297 | 4_2:+13854179 | None:intergenic |
| TTCTTTGAGCCACAATTCAC+TGG | 0.461563 | 4_2:-13855298 | Msa0590390:CDS |
| TTCAATATGGCTGCTGGAGA+GGG | 0.471243 | 4_2:-13855220 | Msa0590390:intron |
| TCCTCTGAAACTGAAGAAGC+GGG | 0.487005 | 4_2:+13854227 | None:intergenic |
| CTATAGTAGAGGATATATAG+AGG | 0.488277 | 4_2:-13854107 | Msa0590390:three_prime_UTR |
| TAGAACATCTGAAGTTATAG+TGG | 0.488747 | 4_2:-13855407 | Msa0590390:CDS |
| ATGTAATAATCAAGTTGAGT+TGG | 0.497257 | 4_2:-13854044 | Msa0590390:three_prime_UTR |
| CTTCAATATGGCTGCTGGAG+AGG | 0.505716 | 4_2:-13855221 | Msa0590390:CDS |
| ATGGTCGAGCTTGTGAGCTC+CGG | 0.514705 | 4_2:-13854263 | Msa0590390:CDS |
| CCCCGCTTCTTCAGTTTCAG+AGG | 0.514848 | 4_2:-13854228 | Msa0590390:CDS |
| AGAAAAGGTCAACAATGTTA+GGG | 0.524892 | 4_2:+13855242 | None:intergenic |
| TGAGAAGAAGGTGCAGCTGC+AGG | 0.526134 | 4_2:+13854191 | None:intergenic |
| GACCAACCCTCGTCGTGCTA+TGG | 0.530876 | 4_2:-13854282 | Msa0590390:CDS |
| GTCCTCTGAAACTGAAGAAG+CGG | 0.537628 | 4_2:+13854226 | None:intergenic |
| TCCTATGTTTACTATAGTAG+AGG | 0.567624 | 4_2:-13854118 | Msa0590390:three_prime_UTR |
| TATAGTAGAGGATATATAGA+GGG | 0.575325 | 4_2:-13854106 | Msa0590390:three_prime_UTR |
| GACCATAGCACGACGAGGGT+TGG | 0.575610 | 4_2:+13854280 | None:intergenic |
| TGCAGCTGAAATGGCATGTG+AGG | 0.589265 | 4_2:-13855530 | Msa0590390:intron |
| TATACATACCTAAAGATGCA+TGG | 0.589615 | 4_2:+13855728 | None:intergenic |
| TCCTCTACTATAGTAAACAT+AGG | 0.591635 | 4_2:+13854117 | None:intergenic |
| CAAAGTTTGCCAGTGAATTG+TGG | 0.594692 | 4_2:+13855289 | None:intergenic |
| CACCACATGCTTCCACACAT+TGG | 0.599473 | 4_2:+13855356 | None:intergenic |
| GGTGTTGATAGAAGTTCTGT+TGG | 0.610517 | 4_2:-13855337 | Msa0590390:CDS |
| TAGTTTGCTTGAGAAAGACA+TGG | 0.639175 | 4_2:+13855783 | None:intergenic |
| TCAAAACAAATTCAATAACA+AGG | 0.649748 | 4_2:+13854070 | None:intergenic |
| GGCATGTGAGGACTTACCAA+AGG | 0.656235 | 4_2:-13855518 | Msa0590390:CDS |
| AGCTCGACCATAGCACGACG+AGG | 0.664011 | 4_2:+13854275 | None:intergenic |
| CATTGAGACAGACCAATGTG+TGG | 0.673666 | 4_2:-13855368 | Msa0590390:CDS |
| GCTCGACCATAGCACGACGA+GGG | 0.698174 | 4_2:+13854276 | None:intergenic |
| CCTCTGAAACTGAAGAAGCG+GGG | 0.706772 | 4_2:+13854228 | None:intergenic |
| GACCAATGTGTGGAAGCATG+TGG | 0.721045 | 4_2:-13855358 | Msa0590390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAGTATAATTATATATGT+TGG | - | chr4_2:13854834-13854853 | Msa0590390:intron | 10.0% |
| !!! | TTTGAAGTTAAAATATTTTA+TGG | + | chr4_2:13855289-13855308 | None:intergenic | 10.0% |
| !! | TTTAGTATAATTATATATGT+TGG | - | chr4_2:13854834-13854853 | Msa0590390:intron | 10.0% |
| !!! | TTTGAAGTTAAAATATTTTA+TGG | + | chr4_2:13855289-13855308 | None:intergenic | 10.0% |
| !!! | CACATTGATTTTTTTTTAAT+CGG | + | chr4_2:13854978-13854997 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAATGTAACCT+AGG | - | chr4_2:13855363-13855382 | Msa0590390:CDS | 15.0% |
| !!! | CACATTGATTTTTTTTTAAT+CGG | + | chr4_2:13854978-13854997 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAATGTAACCT+AGG | - | chr4_2:13855363-13855382 | Msa0590390:CDS | 15.0% |
| !!! | TCTAAATAAAGGTATAGTTT+GGG | + | chr4_2:13854012-13854031 | None:intergenic | 20.0% |
| !!! | TTCTAAATAAAGGTATAGTT+TGG | + | chr4_2:13854013-13854032 | None:intergenic | 20.0% |
| !!! | TAGTTGTTCATTTTTTTTCT+TGG | - | chr4_2:13854219-13854238 | Msa0590390:CDS | 20.0% |
| !! | ATTGTAGATATTGGAAAATT+TGG | + | chr4_2:13855055-13855074 | None:intergenic | 20.0% |
| !!! | TTTTCCAATATCTACAATTT+TGG | - | chr4_2:13855057-13855076 | Msa0590390:intron | 20.0% |
| !!! | TTTAACTTCAAATCTAATCA+AGG | - | chr4_2:13855297-13855316 | Msa0590390:CDS | 20.0% |
| !! | TAGAAAATAAACAAATTCCT+AGG | + | chr4_2:13855383-13855402 | None:intergenic | 20.0% |
| !! | TCAAAACAAATTCAATAACA+AGG | + | chr4_2:13855749-13855768 | None:intergenic | 20.0% |
| !!! | CAATTCCAAAATTTGATAAT+TGG | + | chr4_2:13855847-13855866 | None:intergenic | 20.0% |
| !!! | TCTAAATAAAGGTATAGTTT+GGG | + | chr4_2:13854012-13854031 | None:intergenic | 20.0% |
| !!! | TTCTAAATAAAGGTATAGTT+TGG | + | chr4_2:13854013-13854032 | None:intergenic | 20.0% |
| !!! | TAGTTGTTCATTTTTTTTCT+TGG | - | chr4_2:13854219-13854238 | Msa0590390:CDS | 20.0% |
| !! | ATTGTAGATATTGGAAAATT+TGG | + | chr4_2:13855055-13855074 | None:intergenic | 20.0% |
| !!! | TTTTCCAATATCTACAATTT+TGG | - | chr4_2:13855057-13855076 | Msa0590390:intron | 20.0% |
| !!! | TTTAACTTCAAATCTAATCA+AGG | - | chr4_2:13855297-13855316 | Msa0590390:CDS | 20.0% |
| !! | TAGAAAATAAACAAATTCCT+AGG | + | chr4_2:13855383-13855402 | None:intergenic | 20.0% |
| !! | TCAAAACAAATTCAATAACA+AGG | + | chr4_2:13855749-13855768 | None:intergenic | 20.0% |
| !!! | CAATTCCAAAATTTGATAAT+TGG | + | chr4_2:13855847-13855866 | None:intergenic | 20.0% |
| ! | AAAATGGAGAAGTTGTATTT+AGG | + | chr4_2:13853989-13854008 | None:intergenic | 25.0% |
| !!! | AAAGACATGGTTCTAAATAA+AGG | + | chr4_2:13854023-13854042 | None:intergenic | 25.0% |
| !!! | ATTTTTTTCCATGCATCTTT+AGG | - | chr4_2:13854129-13854148 | Msa0590390:three_prime_UTR | 25.0% |
| ! | AGTTGTGTCTAAATTACAAT+AGG | - | chr4_2:13854674-13854693 | Msa0590390:intron | 25.0% |
| ! | TTCTTTAATTCTTCTATGCA+AGG | - | chr4_2:13855138-13855157 | Msa0590390:intron | 25.0% |
| !! | TAAACATTGCTCTAAATGTA+AGG | + | chr4_2:13855210-13855229 | None:intergenic | 25.0% |
| !!! | TCTCCTTATGTTTTGTTAAT+TGG | - | chr4_2:13855439-13855458 | Msa0590390:CDS | 25.0% |
| ! | ATGCCAATTAACAAAACATA+AGG | + | chr4_2:13855445-13855464 | None:intergenic | 25.0% |
| ! | TATAGTAGAGGATATATAGA+GGG | - | chr4_2:13855710-13855729 | Msa0590390:intron | 25.0% |
| ! | GATATATAGAGGGAAATATA+TGG | - | chr4_2:13855720-13855739 | Msa0590390:intron | 25.0% |
| !!! | ATGTAATAATCAAGTTGAGT+TGG | - | chr4_2:13855772-13855791 | Msa0590390:CDS | 25.0% |
| !!! | TGTAATAATCAAGTTGAGTT+GGG | - | chr4_2:13855773-13855792 | Msa0590390:CDS | 25.0% |
| !! | GTTCTCCAATTATCAAATTT+TGG | - | chr4_2:13855839-13855858 | Msa0590390:five_prime_UTR | 25.0% |
| ! | AAAATGGAGAAGTTGTATTT+AGG | + | chr4_2:13853989-13854008 | None:intergenic | 25.0% |
| !!! | AAAGACATGGTTCTAAATAA+AGG | + | chr4_2:13854023-13854042 | None:intergenic | 25.0% |
| !!! | ATTTTTTTCCATGCATCTTT+AGG | - | chr4_2:13854129-13854148 | Msa0590390:three_prime_UTR | 25.0% |
| ! | AGTTGTGTCTAAATTACAAT+AGG | - | chr4_2:13854674-13854693 | Msa0590390:intron | 25.0% |
| ! | TTCTTTAATTCTTCTATGCA+AGG | - | chr4_2:13855138-13855157 | Msa0590390:intron | 25.0% |
| !! | TAAACATTGCTCTAAATGTA+AGG | + | chr4_2:13855210-13855229 | None:intergenic | 25.0% |
| !!! | TCTCCTTATGTTTTGTTAAT+TGG | - | chr4_2:13855439-13855458 | Msa0590390:CDS | 25.0% |
| ! | ATGCCAATTAACAAAACATA+AGG | + | chr4_2:13855445-13855464 | None:intergenic | 25.0% |
| ! | TATAGTAGAGGATATATAGA+GGG | - | chr4_2:13855710-13855729 | Msa0590390:intron | 25.0% |
| ! | GATATATAGAGGGAAATATA+TGG | - | chr4_2:13855720-13855739 | Msa0590390:intron | 25.0% |
| !!! | ATGTAATAATCAAGTTGAGT+TGG | - | chr4_2:13855772-13855791 | Msa0590390:CDS | 25.0% |
| !!! | TGTAATAATCAAGTTGAGTT+GGG | - | chr4_2:13855773-13855792 | Msa0590390:CDS | 25.0% |
| !! | GTTCTCCAATTATCAAATTT+TGG | - | chr4_2:13855839-13855858 | Msa0590390:five_prime_UTR | 25.0% |
| GAAGTTGTATTTAGGAAAGA+AGG | + | chr4_2:13853981-13854000 | None:intergenic | 30.0% | |
| ! | AAAGGTATAGTTTGGGAAAA+TGG | + | chr4_2:13854005-13854024 | None:intergenic | 30.0% |
| TTTCTCAAGCAAACTATCAT+TGG | - | chr4_2:13854040-13854059 | Msa0590390:three_prime_UTR | 30.0% | |
| TATACATACCTAAAGATGCA+TGG | + | chr4_2:13854091-13854110 | None:intergenic | 30.0% | |
| ! | ACAAATTTTTGCAGCTGAAA+TGG | - | chr4_2:13854277-13854296 | Msa0590390:CDS | 30.0% |
| ! | TAGAACATCTGAAGTTATAG+TGG | - | chr4_2:13854409-13854428 | Msa0590390:intron | 30.0% |
| AGAAAAGGTCAACAATGTTA+GGG | + | chr4_2:13854577-13854596 | None:intergenic | 30.0% | |
| AAGAAAAGGTCAACAATGTT+AGG | + | chr4_2:13854578-13854597 | None:intergenic | 30.0% | |
| ! | TGTTGACCTTTTCTTCAATA+TGG | - | chr4_2:13854583-13854602 | Msa0590390:intron | 30.0% |
| TCTCAAATTATTAGCAGTGT+CGG | + | chr4_2:13854803-13854822 | None:intergenic | 30.0% | |
| ! | TCCAATATCTACAATTTTGG+AGG | - | chr4_2:13855060-13855079 | Msa0590390:intron | 30.0% |
| ! | ATTGCTCTAAATGTAAGGAA+AGG | + | chr4_2:13855205-13855224 | None:intergenic | 30.0% |
| CCTGTTGTCACATAAATTTA+AGG | + | chr4_2:13855481-13855500 | None:intergenic | 30.0% | |
| CCTTAAATTTATGTGACAAC+AGG | - | chr4_2:13855478-13855497 | Msa0590390:CDS | 30.0% | |
| !! | TCTCAGTAATTTTGGAGATA+TGG | - | chr4_2:13855643-13855662 | Msa0590390:intron | 30.0% |
| TCCTATGTTTACTATAGTAG+AGG | - | chr4_2:13855698-13855717 | Msa0590390:intron | 30.0% | |
| TCCTCTACTATAGTAAACAT+AGG | + | chr4_2:13855702-13855721 | None:intergenic | 30.0% | |
| CTATAGTAGAGGATATATAG+AGG | - | chr4_2:13855709-13855728 | Msa0590390:intron | 30.0% | |
| GAAGTTGTATTTAGGAAAGA+AGG | + | chr4_2:13853981-13854000 | None:intergenic | 30.0% | |
| ! | AAAGGTATAGTTTGGGAAAA+TGG | + | chr4_2:13854005-13854024 | None:intergenic | 30.0% |
| TTTCTCAAGCAAACTATCAT+TGG | - | chr4_2:13854040-13854059 | Msa0590390:three_prime_UTR | 30.0% | |
| TATACATACCTAAAGATGCA+TGG | + | chr4_2:13854091-13854110 | None:intergenic | 30.0% | |
| ! | ACAAATTTTTGCAGCTGAAA+TGG | - | chr4_2:13854277-13854296 | Msa0590390:CDS | 30.0% |
| ! | TAGAACATCTGAAGTTATAG+TGG | - | chr4_2:13854409-13854428 | Msa0590390:intron | 30.0% |
| AGAAAAGGTCAACAATGTTA+GGG | + | chr4_2:13854577-13854596 | None:intergenic | 30.0% | |
| AAGAAAAGGTCAACAATGTT+AGG | + | chr4_2:13854578-13854597 | None:intergenic | 30.0% | |
| ! | TGTTGACCTTTTCTTCAATA+TGG | - | chr4_2:13854583-13854602 | Msa0590390:intron | 30.0% |
| TCTCAAATTATTAGCAGTGT+CGG | + | chr4_2:13854803-13854822 | None:intergenic | 30.0% | |
| ! | TCCAATATCTACAATTTTGG+AGG | - | chr4_2:13855060-13855079 | Msa0590390:intron | 30.0% |
| ! | ATTGCTCTAAATGTAAGGAA+AGG | + | chr4_2:13855205-13855224 | None:intergenic | 30.0% |
| CCTGTTGTCACATAAATTTA+AGG | + | chr4_2:13855481-13855500 | None:intergenic | 30.0% | |
| CCTTAAATTTATGTGACAAC+AGG | - | chr4_2:13855478-13855497 | Msa0590390:CDS | 30.0% | |
| !! | TCTCAGTAATTTTGGAGATA+TGG | - | chr4_2:13855643-13855662 | Msa0590390:intron | 30.0% |
| TCCTATGTTTACTATAGTAG+AGG | - | chr4_2:13855698-13855717 | Msa0590390:intron | 30.0% | |
| TCCTCTACTATAGTAAACAT+AGG | + | chr4_2:13855702-13855721 | None:intergenic | 30.0% | |
| CTATAGTAGAGGATATATAG+AGG | - | chr4_2:13855709-13855728 | Msa0590390:intron | 30.0% | |
| !! | TAGTTTGCTTGAGAAAGACA+TGG | + | chr4_2:13854036-13854055 | None:intergenic | 35.0% |
| TTTCTCATCCATGCATCTTT+AGG | - | chr4_2:13854080-13854099 | Msa0590390:three_prime_UTR | 35.0% | |
| TATACATGCCTAAAGATGCA+TGG | + | chr4_2:13854140-13854159 | None:intergenic | 35.0% | |
| ATCTGGAAAGAGATGTTTGT+TGG | - | chr4_2:13854346-13854365 | Msa0590390:intron | 35.0% | |
| ! | TGTTTGTTGGAGACTCAAAA+AGG | - | chr4_2:13854359-13854378 | Msa0590390:intron | 35.0% |
| GCCTCCAAAATTGTAGATAT+TGG | + | chr4_2:13855064-13855083 | None:intergenic | 35.0% | |
| ACTTTCTTAGTGATTGTCGA+CGG | + | chr4_2:13855257-13855276 | None:intergenic | 35.0% | |
| TTGTGTTTCTCACATAGTTC+TGG | + | chr4_2:13855514-13855533 | None:intergenic | 35.0% | |
| ! | CACCTTCTTCTCAGTAATTT+TGG | - | chr4_2:13855635-13855654 | Msa0590390:intron | 35.0% |
| CTCCAAAATTACTGAGAAGA+AGG | + | chr4_2:13855640-13855659 | None:intergenic | 35.0% | |
| !! | TTTGGAATTGTTTCTGCTCT+TGG | - | chr4_2:13855857-13855876 | Msa0590390:five_prime_UTR | 35.0% |
| !! | TAGTTTGCTTGAGAAAGACA+TGG | + | chr4_2:13854036-13854055 | None:intergenic | 35.0% |
| TTTCTCATCCATGCATCTTT+AGG | - | chr4_2:13854080-13854099 | Msa0590390:three_prime_UTR | 35.0% | |
| TATACATGCCTAAAGATGCA+TGG | + | chr4_2:13854140-13854159 | None:intergenic | 35.0% | |
| ATCTGGAAAGAGATGTTTGT+TGG | - | chr4_2:13854346-13854365 | Msa0590390:intron | 35.0% | |
| ! | TGTTTGTTGGAGACTCAAAA+AGG | - | chr4_2:13854359-13854378 | Msa0590390:intron | 35.0% |
| GCCTCCAAAATTGTAGATAT+TGG | + | chr4_2:13855064-13855083 | None:intergenic | 35.0% | |
| ACTTTCTTAGTGATTGTCGA+CGG | + | chr4_2:13855257-13855276 | None:intergenic | 35.0% | |
| TTGTGTTTCTCACATAGTTC+TGG | + | chr4_2:13855514-13855533 | None:intergenic | 35.0% | |
| ! | CACCTTCTTCTCAGTAATTT+TGG | - | chr4_2:13855635-13855654 | Msa0590390:intron | 35.0% |
| CTCCAAAATTACTGAGAAGA+AGG | + | chr4_2:13855640-13855659 | None:intergenic | 35.0% | |
| !! | TTTGGAATTGTTTCTGCTCT+TGG | - | chr4_2:13855857-13855876 | Msa0590390:five_prime_UTR | 35.0% |
| ! | GAGAAAGTACACACTTCCTT+TGG | + | chr4_2:13854317-13854336 | None:intergenic | 40.0% |
| ACTTTCTCAGTAGCTTCATC+TGG | - | chr4_2:13854329-13854348 | Msa0590390:intron | 40.0% | |
| !! | GAGACTCAAAAAGGTGTCAA+TGG | - | chr4_2:13854368-13854387 | Msa0590390:intron | 40.0% |
| !! | GGTGTTGATAGAAGTTCTGT+TGG | - | chr4_2:13854479-13854498 | Msa0590390:intron | 40.0% |
| TTCTTTGAGCCACAATTCAC+TGG | - | chr4_2:13854518-13854537 | Msa0590390:intron | 40.0% | |
| CAAAGTTTGCCAGTGAATTG+TGG | + | chr4_2:13854530-13854549 | None:intergenic | 40.0% | |
| CAGCAGCCATATTGAAGAAA+AGG | + | chr4_2:13854592-13854611 | None:intergenic | 40.0% | |
| ! | CTTTTCTTCAATATGGCTGC+TGG | - | chr4_2:13854590-13854609 | Msa0590390:intron | 40.0% |
| ! | GAGAAAGTACACACTTCCTT+TGG | + | chr4_2:13854317-13854336 | None:intergenic | 40.0% |
| ACTTTCTCAGTAGCTTCATC+TGG | - | chr4_2:13854329-13854348 | Msa0590390:intron | 40.0% | |
| !! | GAGACTCAAAAAGGTGTCAA+TGG | - | chr4_2:13854368-13854387 | Msa0590390:intron | 40.0% |
| !! | GGTGTTGATAGAAGTTCTGT+TGG | - | chr4_2:13854479-13854498 | Msa0590390:intron | 40.0% |
| TTCTTTGAGCCACAATTCAC+TGG | - | chr4_2:13854518-13854537 | Msa0590390:intron | 40.0% | |
| CAAAGTTTGCCAGTGAATTG+TGG | + | chr4_2:13854530-13854549 | None:intergenic | 40.0% | |
| CAGCAGCCATATTGAAGAAA+AGG | + | chr4_2:13854592-13854611 | None:intergenic | 40.0% | |
| ! | CTTTTCTTCAATATGGCTGC+TGG | - | chr4_2:13854590-13854609 | Msa0590390:intron | 40.0% |
| CATTGAGACAGACCAATGTG+TGG | - | chr4_2:13854448-13854467 | Msa0590390:intron | 45.0% | |
| !! | GGGCACTTTTTGTAACAAGC+TGG | + | chr4_2:13854557-13854576 | None:intergenic | 45.0% |
| TTCAATATGGCTGCTGGAGA+GGG | - | chr4_2:13854596-13854615 | Msa0590390:intron | 45.0% | |
| TGTTGGTGTAGTGTCTGTGT+CGG | - | chr4_2:13854851-13854870 | Msa0590390:intron | 45.0% | |
| CAGTGAGTTGCTATGAAGCA+TGG | + | chr4_2:13854923-13854942 | None:intergenic | 45.0% | |
| CATGCTTCATAGCAACTCAC+TGG | - | chr4_2:13854921-13854940 | Msa0590390:intron | 45.0% | |
| !! | TCCTCTGAAACTGAAGAAGC+GGG | + | chr4_2:13855592-13855611 | None:intergenic | 45.0% |
| !! | GTCCTCTGAAACTGAAGAAG+CGG | + | chr4_2:13855593-13855612 | None:intergenic | 45.0% |
| CATTGAGACAGACCAATGTG+TGG | - | chr4_2:13854448-13854467 | Msa0590390:intron | 45.0% | |
| !! | GGGCACTTTTTGTAACAAGC+TGG | + | chr4_2:13854557-13854576 | None:intergenic | 45.0% |
| TTCAATATGGCTGCTGGAGA+GGG | - | chr4_2:13854596-13854615 | Msa0590390:intron | 45.0% | |
| TGTTGGTGTAGTGTCTGTGT+CGG | - | chr4_2:13854851-13854870 | Msa0590390:intron | 45.0% | |
| CAGTGAGTTGCTATGAAGCA+TGG | + | chr4_2:13854923-13854942 | None:intergenic | 45.0% | |
| CATGCTTCATAGCAACTCAC+TGG | - | chr4_2:13854921-13854940 | Msa0590390:intron | 45.0% | |
| !! | TCCTCTGAAACTGAAGAAGC+GGG | + | chr4_2:13855592-13855611 | None:intergenic | 45.0% |
| !! | GTCCTCTGAAACTGAAGAAG+CGG | + | chr4_2:13855593-13855612 | None:intergenic | 45.0% |
| !!! | AATATATAATTTTAATGTTT+TGG | + | chr4_2:13855679-13855698 | None:intergenic | 5.0% |
| !!! | AATATATAATTTTAATGTTT+TGG | + | chr4_2:13855679-13855698 | None:intergenic | 5.0% |
| TGCAGCTGAAATGGCATGTG+AGG | - | chr4_2:13854286-13854305 | Msa0590390:CDS | 50.0% | |
| GGCATGTGAGGACTTACCAA+AGG | - | chr4_2:13854298-13854317 | Msa0590390:CDS | 50.0% | |
| ! | GACCAATGTGTGGAAGCATG+TGG | - | chr4_2:13854458-13854477 | Msa0590390:intron | 50.0% |
| CACCACATGCTTCCACACAT+TGG | + | chr4_2:13854463-13854482 | None:intergenic | 50.0% | |
| CTTCAATATGGCTGCTGGAG+AGG | - | chr4_2:13854595-13854614 | Msa0590390:intron | 50.0% | |
| GTCAACGTCTTGTCGTGTCA+GGG | + | chr4_2:13854777-13854796 | None:intergenic | 50.0% | |
| TGTCAACGTCTTGTCGTGTC+AGG | + | chr4_2:13854778-13854797 | None:intergenic | 50.0% | |
| CACGACACGAGTCTGTTATC+AGG | - | chr4_2:13854875-13854894 | Msa0590390:intron | 50.0% | |
| TCTTAGTGATTGTCGACGGC+AGG | + | chr4_2:13855253-13855272 | None:intergenic | 50.0% | |
| !! | CCTCTGAAACTGAAGAAGCG+GGG | + | chr4_2:13855591-13855610 | None:intergenic | 50.0% |
| TGCAGCTGAAATGGCATGTG+AGG | - | chr4_2:13854286-13854305 | Msa0590390:CDS | 50.0% | |
| GGCATGTGAGGACTTACCAA+AGG | - | chr4_2:13854298-13854317 | Msa0590390:CDS | 50.0% | |
| ! | GACCAATGTGTGGAAGCATG+TGG | - | chr4_2:13854458-13854477 | Msa0590390:intron | 50.0% |
| CACCACATGCTTCCACACAT+TGG | + | chr4_2:13854463-13854482 | None:intergenic | 50.0% | |
| CTTCAATATGGCTGCTGGAG+AGG | - | chr4_2:13854595-13854614 | Msa0590390:intron | 50.0% | |
| GTCAACGTCTTGTCGTGTCA+GGG | + | chr4_2:13854777-13854796 | None:intergenic | 50.0% | |
| TGTCAACGTCTTGTCGTGTC+AGG | + | chr4_2:13854778-13854797 | None:intergenic | 50.0% | |
| CACGACACGAGTCTGTTATC+AGG | - | chr4_2:13854875-13854894 | Msa0590390:intron | 50.0% | |
| TCTTAGTGATTGTCGACGGC+AGG | + | chr4_2:13855253-13855272 | None:intergenic | 50.0% | |
| !! | CCTCTGAAACTGAAGAAGCG+GGG | + | chr4_2:13855591-13855610 | None:intergenic | 50.0% |
| ATGGTCGAGCTTGTGAGCTC+CGG | - | chr4_2:13855553-13855572 | Msa0590390:intron | 55.0% | |
| CCCCGCTTCTTCAGTTTCAG+AGG | - | chr4_2:13855588-13855607 | Msa0590390:intron | 55.0% | |
| ! | TGAGAAGAAGGTGCAGCTGC+AGG | + | chr4_2:13855628-13855647 | None:intergenic | 55.0% |
| ATGGTCGAGCTTGTGAGCTC+CGG | - | chr4_2:13855553-13855572 | Msa0590390:intron | 55.0% | |
| CCCCGCTTCTTCAGTTTCAG+AGG | - | chr4_2:13855588-13855607 | Msa0590390:intron | 55.0% | |
| ! | TGAGAAGAAGGTGCAGCTGC+AGG | + | chr4_2:13855628-13855647 | None:intergenic | 55.0% |
| GACCAACCCTCGTCGTGCTA+TGG | - | chr4_2:13855534-13855553 | Msa0590390:intron | 60.0% | |
| GACCATAGCACGACGAGGGT+TGG | + | chr4_2:13855539-13855558 | None:intergenic | 60.0% | |
| GCTCGACCATAGCACGACGA+GGG | + | chr4_2:13855543-13855562 | None:intergenic | 60.0% | |
| AGCTCGACCATAGCACGACG+AGG | + | chr4_2:13855544-13855563 | None:intergenic | 60.0% | |
| GTGAGCTCCGGAGCTGCATT+TGG | - | chr4_2:13855565-13855584 | Msa0590390:intron | 60.0% | |
| GACCAACCCTCGTCGTGCTA+TGG | - | chr4_2:13855534-13855553 | Msa0590390:intron | 60.0% | |
| GACCATAGCACGACGAGGGT+TGG | + | chr4_2:13855539-13855558 | None:intergenic | 60.0% | |
| GCTCGACCATAGCACGACGA+GGG | + | chr4_2:13855543-13855562 | None:intergenic | 60.0% | |
| AGCTCGACCATAGCACGACG+AGG | + | chr4_2:13855544-13855563 | None:intergenic | 60.0% | |
| GTGAGCTCCGGAGCTGCATT+TGG | - | chr4_2:13855565-13855584 | Msa0590390:intron | 60.0% | |
| AGCGGGGCCAAATGCAGCTC+CGG | + | chr4_2:13855575-13855594 | None:intergenic | 65.0% | |
| AGCGGGGCCAAATGCAGCTC+CGG | + | chr4_2:13855575-13855594 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 13853901 | 13855937 | 13853901 | ID=Msa0590390;Name=Msa0590390 |
| chr4_2 | mRNA | 13853901 | 13855937 | 13853901 | ID=Msa0590390-mRNA-1;Parent=Msa0590390;Name=Msa0590390-mRNA-1;_AED=0.01;_eAED=0.01;_QI=134|1|1|1|0.5|0.33|3|286|181 |
| chr4_2 | exon | 13853901 | 13854338 | 13853901 | ID=Msa0590390-mRNA-1:exon:4049;Parent=Msa0590390-mRNA-1 |
| chr4_2 | exon | 13855221 | 13855547 | 13855221 | ID=Msa0590390-mRNA-1:exon:4048;Parent=Msa0590390-mRNA-1 |
| chr4_2 | exon | 13855737 | 13855937 | 13855737 | ID=Msa0590390-mRNA-1:exon:4047;Parent=Msa0590390-mRNA-1 |
| chr4_2 | five_prime_UTR | 13855804 | 13855937 | 13855804 | ID=Msa0590390-mRNA-1:five_prime_utr;Parent=Msa0590390-mRNA-1 |
| chr4_2 | CDS | 13855737 | 13855803 | 13855737 | ID=Msa0590390-mRNA-1:cds;Parent=Msa0590390-mRNA-1 |
| chr4_2 | CDS | 13855221 | 13855547 | 13855221 | ID=Msa0590390-mRNA-1:cds;Parent=Msa0590390-mRNA-1 |
| chr4_2 | CDS | 13854187 | 13854338 | 13854187 | ID=Msa0590390-mRNA-1:cds;Parent=Msa0590390-mRNA-1 |
| chr4_2 | three_prime_UTR | 13853901 | 13854186 | 13853901 | ID=Msa0590390-mRNA-1:three_prime_utr;Parent=Msa0590390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
