Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485910 | XP_003629304.2 | 81.585 | 429 | 39 | 1 | 1 | 389 | 1 | 429 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485910 | sp|Q8GSM7|HST_TOBAC | 59.770 | 435 | 129 | 5 | 1 | 389 | 1 | 435 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485910 | A0A6J1BF38 | 62.877 | 431 | 118 | 5 | 1 | 389 | 1 | 431 | 0.0 | 554 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0485910 | Msa0617650 | 0.808716 | 2.701077e-50 | -8.615850e-47 |
| Msa0485910 | Msa1143380 | 0.807993 | 3.852848e-50 | -8.615850e-47 |
| Msa0485910 | Msa1201710 | 0.960128 | 3.292557e-118 | -8.615850e-47 |
| Msa0485910 | Msa1226110 | 0.989119 | 9.010027e-177 | -8.615850e-47 |
| Msa0485910 | Msa1294730 | 0.950980 | 5.340748e-109 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485910 | MtrunA17_Chr8g0371821 | 81.585 | 429 | 39 | 1 | 1 | 389 | 1 | 429 | 0.0 | 712 |
| Msa0485910 | MtrunA17_Chr4g0001861 | 67.667 | 433 | 96 | 4 | 1 | 389 | 1 | 433 | 0.0 | 597 |
| Msa0485910 | MtrunA17_Chr2g0334001 | 63.889 | 432 | 113 | 4 | 1 | 389 | 1 | 432 | 0.0 | 558 |
| Msa0485910 | MtrunA17_Chr2g0311401 | 61.794 | 301 | 72 | 4 | 132 | 389 | 2 | 302 | 7.41e-128 | 370 |
| Msa0485910 | MtrunA17_Chr4g0072041 | 36.180 | 445 | 223 | 9 | 3 | 387 | 14 | 457 | 4.08e-89 | 276 |
| Msa0485910 | MtrunA17_Chr4g0054081 | 36.073 | 438 | 218 | 8 | 11 | 387 | 17 | 453 | 2.52e-84 | 264 |
| Msa0485910 | MtrunA17_Chr7g0253501 | 32.900 | 462 | 228 | 14 | 2 | 388 | 1 | 455 | 3.13e-74 | 238 |
| Msa0485910 | MtrunA17_Chr7g0253531 | 32.684 | 462 | 229 | 14 | 2 | 388 | 1 | 455 | 2.46e-71 | 231 |
| Msa0485910 | MtrunA17_Chr3g0087401 | 30.786 | 458 | 235 | 13 | 2 | 387 | 1 | 448 | 2.55e-71 | 230 |
| Msa0485910 | MtrunA17_Chr3g0132001 | 32.227 | 422 | 229 | 9 | 11 | 386 | 22 | 432 | 2.03e-67 | 219 |
| Msa0485910 | MtrunA17_Chr7g0224391 | 31.019 | 432 | 241 | 10 | 3 | 386 | 13 | 435 | 9.36e-63 | 207 |
| Msa0485910 | MtrunA17_Chr2g0311411 | 66.197 | 142 | 48 | 0 | 1 | 142 | 1 | 142 | 2.96e-62 | 197 |
| Msa0485910 | MtrunA17_Chr8g0386141 | 30.930 | 430 | 241 | 10 | 3 | 386 | 7 | 426 | 5.79e-61 | 203 |
| Msa0485910 | MtrunA17_Chr7g0253541 | 30.396 | 454 | 246 | 13 | 3 | 388 | 4 | 455 | 5.44e-58 | 196 |
| Msa0485910 | MtrunA17_Chr4g0004701 | 39.545 | 220 | 120 | 5 | 182 | 388 | 21 | 240 | 1.07e-49 | 167 |
| Msa0485910 | MtrunA17_Chr2g0306321 | 29.058 | 382 | 209 | 12 | 22 | 348 | 40 | 414 | 6.25e-47 | 166 |
| Msa0485910 | MtrunA17_Chr7g0252731 | 27.930 | 401 | 204 | 13 | 1 | 348 | 15 | 383 | 1.31e-40 | 149 |
| Msa0485910 | MtrunA17_Chr1g0191081 | 25.850 | 441 | 268 | 15 | 1 | 389 | 14 | 447 | 8.60e-40 | 147 |
| Msa0485910 | MtrunA17_Chr1g0165671 | 28.246 | 439 | 252 | 15 | 1 | 385 | 23 | 452 | 2.60e-39 | 146 |
| Msa0485910 | MtrunA17_Chr7g0235531 | 24.153 | 443 | 270 | 9 | 3 | 388 | 4 | 437 | 2.58e-38 | 142 |
| Msa0485910 | MtrunA17_Chr7g0273761 | 27.045 | 440 | 257 | 16 | 1 | 384 | 378 | 809 | 9.53e-38 | 144 |
| Msa0485910 | MtrunA17_Chr8g0371851 | 68.367 | 98 | 28 | 2 | 1 | 95 | 28 | 125 | 1.29e-37 | 133 |
| Msa0485910 | MtrunA17_Chr5g0433641 | 26.136 | 440 | 263 | 14 | 1 | 385 | 6 | 438 | 1.61e-36 | 138 |
| Msa0485910 | MtrunA17_Chr1g0165661 | 26.492 | 419 | 252 | 12 | 3 | 372 | 9 | 420 | 3.41e-36 | 137 |
| Msa0485910 | MtrunA17_Chr3g0113821 | 25.373 | 402 | 233 | 11 | 3 | 348 | 5 | 395 | 1.50e-35 | 135 |
| Msa0485910 | MtrunA17_Chr3g0134041 | 26.521 | 411 | 243 | 12 | 26 | 383 | 34 | 438 | 5.69e-35 | 134 |
| Msa0485910 | MtrunA17_Chr7g0273721 | 25.682 | 440 | 266 | 12 | 1 | 385 | 7 | 440 | 1.58e-34 | 132 |
| Msa0485910 | MtrunA17_Chr1g0165681 | 25.908 | 413 | 252 | 10 | 8 | 372 | 14 | 420 | 3.28e-34 | 132 |
| Msa0485910 | MtrunA17_Chr7g0273731 | 26.364 | 440 | 261 | 14 | 1 | 385 | 89 | 520 | 7.40e-34 | 132 |
| Msa0485910 | MtrunA17_Chr3g0123061 | 25.476 | 420 | 255 | 13 | 3 | 383 | 5 | 405 | 3.75e-33 | 128 |
| Msa0485910 | MtrunA17_Chr7g0273791 | 25.339 | 442 | 263 | 16 | 1 | 385 | 6 | 437 | 6.05e-33 | 128 |
| Msa0485910 | MtrunA17_Chr7g0273781 | 26.047 | 430 | 257 | 13 | 9 | 385 | 49 | 470 | 7.01e-33 | 128 |
| Msa0485910 | MtrunA17_Chr3g0097841 | 31.532 | 222 | 140 | 5 | 179 | 388 | 21 | 242 | 7.42e-33 | 123 |
| Msa0485910 | MtrunA17_Chr4g0027071 | 25.499 | 451 | 255 | 17 | 3 | 384 | 12 | 450 | 6.59e-32 | 125 |
| Msa0485910 | MtrunA17_Chr5g0442701 | 23.451 | 452 | 268 | 12 | 3 | 383 | 10 | 454 | 4.23e-31 | 123 |
| Msa0485910 | MtrunA17_Chr3g0141851 | 25.587 | 426 | 248 | 16 | 11 | 383 | 20 | 429 | 7.76e-31 | 122 |
| Msa0485910 | MtrunA17_Chr6g0467861 | 22.851 | 477 | 262 | 13 | 3 | 389 | 47 | 507 | 1.18e-30 | 122 |
| Msa0485910 | MtrunA17_Chr3g0134091 | 27.532 | 385 | 202 | 11 | 56 | 379 | 68 | 436 | 1.20e-30 | 122 |
| Msa0485910 | MtrunA17_Chr5g0442691 | 23.451 | 452 | 268 | 12 | 3 | 383 | 33 | 477 | 1.32e-30 | 122 |
| Msa0485910 | MtrunA17_Chr2g0283361 | 24.153 | 443 | 265 | 15 | 2 | 384 | 1 | 432 | 1.57e-29 | 119 |
| Msa0485910 | MtrunA17_Chr3g0134071 | 26.136 | 352 | 195 | 8 | 54 | 349 | 68 | 410 | 5.72e-29 | 117 |
| Msa0485910 | MtrunA17_Chr4g0053091 | 26.075 | 372 | 219 | 15 | 56 | 389 | 67 | 420 | 2.78e-28 | 115 |
| Msa0485910 | MtrunA17_Chr4g0004691 | 30.769 | 169 | 111 | 2 | 5 | 171 | 6 | 170 | 1.55e-27 | 107 |
| Msa0485910 | MtrunA17_Chr1g0165711 | 26.651 | 424 | 218 | 15 | 9 | 385 | 15 | 392 | 2.29e-27 | 112 |
| Msa0485910 | MtrunA17_Chr3g0134121 | 26.154 | 390 | 209 | 13 | 56 | 383 | 69 | 441 | 2.70e-27 | 112 |
| Msa0485910 | MtrunA17_Chr3g0134061 | 25.459 | 436 | 247 | 14 | 9 | 374 | 14 | 441 | 2.97e-27 | 112 |
| Msa0485910 | MtrunA17_Chr3g0134111 | 25.455 | 385 | 222 | 11 | 56 | 383 | 65 | 441 | 7.51e-27 | 111 |
| Msa0485910 | MtrunA17_Chr3g0113181 | 26.065 | 399 | 212 | 12 | 56 | 379 | 66 | 456 | 8.72e-27 | 111 |
| Msa0485910 | MtrunA17_Chr8g0359251 | 26.396 | 394 | 220 | 13 | 43 | 383 | 56 | 432 | 1.09e-26 | 110 |
| Msa0485910 | MtrunA17_Chr8g0354371 | 26.613 | 372 | 221 | 13 | 56 | 381 | 64 | 429 | 1.11e-26 | 110 |
| Msa0485910 | MtrunA17_Chr4g0010331 | 26.649 | 379 | 213 | 13 | 56 | 380 | 55 | 422 | 2.37e-26 | 109 |
| Msa0485910 | MtrunA17_Chr4g0001811 | 68.493 | 73 | 17 | 2 | 318 | 389 | 15 | 82 | 3.89e-26 | 100 |
| Msa0485910 | MtrunA17_Chr4g0053081 | 23.760 | 383 | 225 | 13 | 56 | 382 | 64 | 435 | 4.72e-26 | 108 |
| Msa0485910 | MtrunA17_Chr8g0376901 | 23.729 | 413 | 250 | 13 | 23 | 386 | 28 | 424 | 4.87e-26 | 108 |
| Msa0485910 | MtrunA17_Chr3g0106691 | 27.473 | 364 | 199 | 12 | 3 | 308 | 56 | 412 | 9.70e-26 | 108 |
| Msa0485910 | MtrunA17_Chr4g0010361 | 25.714 | 385 | 216 | 10 | 56 | 380 | 55 | 429 | 3.74e-25 | 106 |
| Msa0485910 | MtrunA17_Chr4g0053111 | 23.711 | 388 | 226 | 10 | 56 | 389 | 62 | 433 | 6.16e-25 | 105 |
| Msa0485910 | MtrunA17_Chr5g0436621 | 21.296 | 432 | 222 | 9 | 55 | 383 | 60 | 476 | 1.63e-24 | 104 |
| Msa0485910 | MtrunA17_Chr3g0095731 | 23.614 | 415 | 240 | 12 | 39 | 383 | 46 | 453 | 1.78e-24 | 104 |
| Msa0485910 | MtrunA17_Chr3g0125001 | 24.868 | 378 | 221 | 14 | 56 | 381 | 55 | 421 | 2.42e-24 | 103 |
| Msa0485910 | MtrunA17_Chr4g0005941 | 24.645 | 422 | 212 | 10 | 56 | 379 | 60 | 473 | 4.45e-24 | 103 |
| Msa0485910 | MtrunA17_Chr5g0442721 | 22.616 | 451 | 267 | 12 | 3 | 379 | 10 | 452 | 4.66e-24 | 103 |
| Msa0485910 | MtrunA17_Chr4g0010311 | 24.538 | 379 | 227 | 11 | 56 | 380 | 55 | 428 | 4.70e-24 | 103 |
| Msa0485910 | MtrunA17_Chr3g0095721 | 24.697 | 413 | 229 | 14 | 51 | 388 | 65 | 470 | 5.72e-24 | 103 |
| Msa0485910 | MtrunA17_Chr3g0087221 | 26.463 | 393 | 211 | 16 | 56 | 381 | 55 | 436 | 9.44e-24 | 102 |
| Msa0485910 | MtrunA17_Chr3g0134101 | 25.886 | 367 | 223 | 12 | 56 | 383 | 86 | 442 | 1.03e-23 | 102 |
| Msa0485910 | MtrunA17_Chr7g0224131 | 25.707 | 389 | 211 | 11 | 56 | 382 | 55 | 427 | 2.57e-23 | 100 |
| Msa0485910 | MtrunA17_Chr4g0010381 | 25.648 | 386 | 215 | 15 | 56 | 381 | 55 | 428 | 2.64e-23 | 100 |
| Msa0485910 | MtrunA17_Chr4g0001791 | 71.875 | 64 | 18 | 0 | 70 | 133 | 1 | 64 | 7.59e-23 | 91.7 |
| Msa0485910 | MtrunA17_Chr4g0053061 | 24.165 | 389 | 225 | 9 | 56 | 382 | 87 | 467 | 8.85e-23 | 99.8 |
| Msa0485910 | MtrunA17_Chr4g0001781 | 68.852 | 61 | 19 | 0 | 1 | 61 | 1 | 61 | 1.00e-22 | 90.5 |
| Msa0485910 | MtrunA17_Chr3g0106721 | 27.019 | 359 | 206 | 11 | 3 | 306 | 10 | 367 | 1.47e-22 | 99.0 |
| Msa0485910 | MtrunA17_Chr8g0374911 | 24.935 | 385 | 227 | 13 | 56 | 382 | 80 | 460 | 1.90e-22 | 98.6 |
| Msa0485910 | MtrunA17_Chr5g0438681 | 22.444 | 401 | 258 | 11 | 24 | 383 | 26 | 414 | 3.00e-22 | 97.8 |
| Msa0485910 | MtrunA17_Chr8g0374641 | 24.934 | 381 | 223 | 13 | 56 | 380 | 59 | 432 | 3.03e-22 | 97.8 |
| Msa0485910 | MtrunA17_Chr5g0438701 | 22.194 | 392 | 249 | 13 | 35 | 383 | 37 | 415 | 7.80e-22 | 96.7 |
| Msa0485910 | MtrunA17_Chr6g0470591 | 28.144 | 334 | 180 | 13 | 11 | 287 | 19 | 349 | 1.45e-21 | 95.9 |
| Msa0485910 | MtrunA17_Chr4g0010121 | 25.356 | 351 | 194 | 13 | 56 | 349 | 99 | 438 | 2.11e-21 | 95.5 |
| Msa0485910 | MtrunA17_Chr7g0252771 | 27.315 | 216 | 142 | 5 | 177 | 387 | 47 | 252 | 4.17e-21 | 91.7 |
| Msa0485910 | MtrunA17_Chr7g0270771 | 28.102 | 274 | 151 | 10 | 1 | 237 | 1 | 265 | 5.34e-21 | 91.7 |
| Msa0485910 | MtrunA17_Chr3g0106661 | 25.000 | 456 | 262 | 16 | 3 | 384 | 10 | 459 | 5.72e-21 | 94.4 |
| Msa0485910 | MtrunA17_Chr2g0302471 | 29.139 | 151 | 98 | 2 | 2 | 151 | 3 | 145 | 1.04e-20 | 87.8 |
| Msa0485910 | MtrunA17_Chr5g0408911 | 25.000 | 372 | 218 | 14 | 24 | 345 | 41 | 401 | 7.71e-20 | 90.9 |
| Msa0485910 | MtrunA17_Chr8g0376891 | 21.016 | 433 | 286 | 12 | 1 | 386 | 1 | 424 | 1.18e-19 | 90.5 |
| Msa0485910 | MtrunA17_Chr3g0106761 | 25.397 | 315 | 171 | 11 | 45 | 307 | 9 | 311 | 3.64e-19 | 88.6 |
| Msa0485910 | MtrunA17_Chr7g0219241 | 22.759 | 435 | 243 | 16 | 32 | 388 | 52 | 471 | 1.72e-18 | 87.0 |
| Msa0485910 | MtrunA17_Chr7g0274021 | 24.367 | 316 | 195 | 8 | 35 | 308 | 40 | 353 | 2.30e-18 | 86.7 |
| Msa0485910 | MtrunA17_Chr6g0455341 | 23.558 | 416 | 239 | 14 | 39 | 385 | 50 | 455 | 4.42e-18 | 85.5 |
| Msa0485910 | MtrunA17_Chr7g0253521 | 31.538 | 130 | 76 | 4 | 271 | 388 | 16 | 144 | 6.26e-18 | 80.1 |
| Msa0485910 | MtrunA17_Chr8g0361781 | 24.311 | 399 | 234 | 21 | 4 | 347 | 4 | 389 | 8.38e-18 | 84.7 |
| Msa0485910 | MtrunA17_Chr8g0361771 | 22.637 | 402 | 243 | 18 | 1 | 347 | 1 | 389 | 9.45e-18 | 84.7 |
| Msa0485910 | MtrunA17_Chr1g0199561 | 24.528 | 371 | 209 | 14 | 35 | 347 | 37 | 394 | 1.56e-17 | 84.0 |
| Msa0485910 | MtrunA17_Chr7g0273741 | 33.566 | 143 | 89 | 4 | 1 | 137 | 6 | 148 | 2.55e-17 | 78.6 |
| Msa0485910 | MtrunA17_Chr3g0106741 | 26.531 | 294 | 152 | 12 | 70 | 308 | 59 | 343 | 3.41e-17 | 82.8 |
| Msa0485910 | MtrunA17_Chr6g0471371 | 35.556 | 135 | 83 | 3 | 7 | 137 | 13 | 147 | 2.82e-16 | 76.3 |
| Msa0485910 | MtrunA17_Chr7g0252761 | 32.051 | 156 | 96 | 5 | 1 | 150 | 14 | 165 | 3.99e-16 | 75.5 |
| Msa0485910 | MtrunA17_Chr6g0454761 | 21.905 | 420 | 241 | 17 | 39 | 385 | 532 | 937 | 5.87e-16 | 80.1 |
| Msa0485910 | MtrunA17_Chr3g0134131 | 26.087 | 230 | 125 | 5 | 124 | 344 | 90 | 283 | 1.52e-14 | 73.9 |
| Msa0485910 | MtrunA17_Chr3g0097851 | 32.222 | 90 | 61 | 0 | 209 | 298 | 25 | 114 | 2.01e-14 | 69.3 |
| Msa0485910 | MtrunA17_Chr1g0165741 | 32.374 | 139 | 90 | 3 | 3 | 137 | 9 | 147 | 2.48e-14 | 70.1 |
| Msa0485910 | MtrunA17_Chr7g0219181 | 22.083 | 480 | 266 | 19 | 3 | 388 | 8 | 473 | 1.53e-13 | 72.0 |
| Msa0485910 | MtrunA17_Chr6g0471381 | 28.824 | 170 | 109 | 4 | 209 | 372 | 66 | 229 | 3.24e-13 | 69.3 |
| Msa0485910 | MtrunA17_Chr5g0438721 | 28.571 | 119 | 80 | 2 | 56 | 173 | 9 | 123 | 3.81e-13 | 66.2 |
| Msa0485910 | MtrunA17_Chr8g0353901 | 25.366 | 205 | 147 | 4 | 182 | 382 | 19 | 221 | 8.36e-13 | 67.8 |
| Msa0485910 | MtrunA17_Chr3g0098961 | 33.663 | 101 | 65 | 2 | 9 | 107 | 19 | 119 | 2.59e-12 | 65.1 |
| Msa0485910 | MtrunA17_Chr7g0219301 | 24.316 | 329 | 196 | 16 | 29 | 343 | 545 | 834 | 7.80e-12 | 67.0 |
| Msa0485910 | MtrunA17_Chr8g0353421 | 34.343 | 99 | 63 | 2 | 11 | 107 | 17 | 115 | 1.04e-11 | 62.0 |
| Msa0485910 | MtrunA17_Chr3g0097831 | 35.366 | 82 | 52 | 1 | 2 | 82 | 1 | 82 | 1.29e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485910 | AT5G48930.1 | 59.353 | 433 | 132 | 4 | 1 | 389 | 1 | 433 | 0.0 | 525 |
| Msa0485910 | AT2G19070.1 | 35.635 | 449 | 223 | 9 | 3 | 388 | 4 | 449 | 6.89e-85 | 265 |
| Msa0485910 | AT5G57840.1 | 33.634 | 443 | 234 | 7 | 1 | 389 | 1 | 437 | 1.78e-83 | 261 |
| Msa0485910 | AT5G41040.2 | 29.655 | 435 | 248 | 8 | 3 | 389 | 17 | 441 | 3.18e-64 | 212 |
| Msa0485910 | AT3G48720.1 | 30.536 | 429 | 246 | 8 | 2 | 386 | 8 | 428 | 3.37e-64 | 211 |
| Msa0485910 | AT5G41040.1 | 29.655 | 435 | 248 | 8 | 3 | 389 | 33 | 457 | 4.50e-64 | 212 |
| Msa0485910 | AT5G63560.1 | 29.002 | 431 | 248 | 7 | 1 | 386 | 7 | 424 | 1.10e-62 | 207 |
| Msa0485910 | AT1G03390.1 | 27.083 | 432 | 249 | 13 | 13 | 386 | 32 | 455 | 1.03e-45 | 163 |
| Msa0485910 | AT1G27620.1 | 30.871 | 379 | 202 | 12 | 56 | 387 | 58 | 423 | 4.39e-44 | 159 |
| Msa0485910 | AT5G17540.1 | 27.570 | 428 | 250 | 12 | 9 | 384 | 15 | 434 | 5.06e-42 | 153 |
| Msa0485910 | AT3G03480.1 | 28.046 | 435 | 246 | 13 | 3 | 382 | 19 | 441 | 5.05e-40 | 148 |
| Msa0485910 | AT1G65450.1 | 26.914 | 405 | 224 | 12 | 1 | 348 | 16 | 405 | 2.12e-39 | 146 |
| Msa0485910 | AT2G40230.1 | 24.374 | 439 | 264 | 13 | 2 | 386 | 4 | 428 | 1.91e-36 | 138 |
| Msa0485910 | AT1G28680.1 | 25.000 | 448 | 257 | 14 | 3 | 384 | 4 | 438 | 1.86e-34 | 132 |
| Msa0485910 | AT5G07860.1 | 27.105 | 380 | 213 | 9 | 56 | 383 | 72 | 439 | 8.89e-32 | 125 |
| Msa0485910 | AT1G78990.1 | 26.290 | 407 | 233 | 11 | 33 | 384 | 45 | 439 | 7.23e-31 | 123 |
| Msa0485910 | AT1G24430.1 | 27.390 | 387 | 227 | 17 | 3 | 347 | 5 | 379 | 2.72e-30 | 121 |
| Msa0485910 | AT1G28680.2 | 25.843 | 356 | 209 | 10 | 3 | 307 | 4 | 355 | 2.94e-30 | 120 |
| Msa0485910 | AT1G32910.1 | 25.984 | 381 | 215 | 12 | 53 | 375 | 62 | 433 | 1.72e-29 | 119 |
| Msa0485910 | AT5G16410.1 | 25.377 | 398 | 228 | 12 | 24 | 366 | 61 | 444 | 1.07e-28 | 117 |
| Msa0485910 | AT5G23940.1 | 26.121 | 379 | 222 | 11 | 56 | 380 | 65 | 439 | 1.27e-28 | 117 |
| Msa0485910 | AT3G50270.1 | 25.408 | 429 | 251 | 16 | 8 | 381 | 11 | 425 | 3.22e-28 | 115 |
| Msa0485910 | AT3G50280.1 | 25.065 | 383 | 225 | 11 | 56 | 389 | 59 | 428 | 3.68e-28 | 115 |
| Msa0485910 | AT5G07870.1 | 25.323 | 387 | 223 | 10 | 56 | 383 | 72 | 451 | 6.22e-28 | 114 |
| Msa0485910 | AT5G42830.1 | 24.806 | 387 | 221 | 9 | 56 | 383 | 64 | 439 | 7.19e-28 | 114 |
| Msa0485910 | AT5G01210.1 | 25.840 | 387 | 209 | 8 | 67 | 379 | 73 | 455 | 8.28e-28 | 114 |
| Msa0485910 | AT3G50300.1 | 25.653 | 421 | 256 | 14 | 3 | 370 | 4 | 420 | 1.56e-27 | 113 |
| Msa0485910 | AT5G67160.1 | 26.781 | 351 | 190 | 10 | 52 | 349 | 52 | 388 | 2.66e-27 | 112 |
| Msa0485910 | AT3G26040.1 | 24.884 | 430 | 267 | 13 | 1 | 384 | 1 | 420 | 3.88e-27 | 112 |
| Msa0485910 | AT5G47950.1 | 25.191 | 393 | 251 | 13 | 24 | 384 | 29 | 410 | 7.82e-27 | 111 |
| Msa0485910 | AT3G62160.1 | 25.389 | 386 | 221 | 13 | 53 | 388 | 52 | 420 | 9.17e-27 | 111 |
| Msa0485910 | AT5G67150.1 | 26.963 | 382 | 213 | 15 | 56 | 380 | 61 | 433 | 1.29e-26 | 110 |
| Msa0485910 | AT3G30280.1 | 24.480 | 433 | 259 | 15 | 1 | 379 | 4 | 422 | 1.29e-26 | 110 |
| Msa0485910 | AT5G07850.1 | 24.802 | 379 | 229 | 12 | 56 | 383 | 70 | 443 | 2.55e-25 | 107 |
| Msa0485910 | AT5G07080.1 | 25.000 | 448 | 256 | 16 | 1 | 384 | 12 | 443 | 7.76e-25 | 105 |
| Msa0485910 | AT4G15390.1 | 23.529 | 442 | 263 | 17 | 1 | 384 | 6 | 430 | 1.27e-24 | 105 |
| Msa0485910 | AT4G15390.2 | 23.529 | 442 | 263 | 17 | 1 | 384 | 6 | 430 | 1.27e-24 | 105 |
| Msa0485910 | AT3G47170.1 | 27.855 | 359 | 180 | 14 | 10 | 301 | 19 | 365 | 6.58e-24 | 103 |
| Msa0485910 | AT5G38130.1 | 25.472 | 424 | 261 | 15 | 3 | 375 | 24 | 443 | 9.24e-24 | 102 |
| Msa0485910 | AT3G50280.2 | 24.752 | 303 | 171 | 8 | 129 | 389 | 11 | 298 | 1.33e-23 | 100 |
| Msa0485910 | AT5G23970.1 | 23.515 | 421 | 274 | 13 | 1 | 383 | 1 | 411 | 1.58e-23 | 102 |
| Msa0485910 | AT5G47980.1 | 23.251 | 443 | 255 | 17 | 3 | 382 | 5 | 425 | 6.85e-22 | 97.4 |
| Msa0485910 | AT1G24420.2 | 23.481 | 362 | 214 | 11 | 67 | 383 | 76 | 419 | 9.61e-22 | 96.7 |
| Msa0485910 | AT1G24420.1 | 23.481 | 362 | 214 | 11 | 67 | 383 | 76 | 419 | 9.61e-22 | 96.7 |
| Msa0485910 | AT2G39980.1 | 22.143 | 420 | 216 | 11 | 56 | 379 | 62 | 466 | 3.96e-20 | 92.4 |
| Msa0485910 | AT2G25150.1 | 21.995 | 441 | 281 | 15 | 1 | 383 | 11 | 446 | 5.32e-20 | 91.7 |
| Msa0485910 | AT4G15400.1 | 24.186 | 430 | 259 | 16 | 3 | 382 | 5 | 417 | 6.61e-19 | 88.6 |
| Msa0485910 | AT3G50290.1 | 24.815 | 270 | 160 | 6 | 114 | 341 | 1 | 269 | 7.86e-18 | 83.2 |
| Msa0485910 | AT5G61160.1 | 23.389 | 419 | 245 | 15 | 36 | 387 | 38 | 447 | 8.44e-18 | 85.1 |
| Msa0485910 | AT1G65450.3 | 30.000 | 180 | 106 | 5 | 178 | 348 | 73 | 241 | 3.12e-17 | 81.6 |
| Msa0485910 | AT4G31910.1 | 25.191 | 393 | 212 | 18 | 19 | 341 | 27 | 407 | 1.08e-16 | 82.0 |
| Msa0485910 | AT5G39050.1 | 22.254 | 346 | 192 | 9 | 110 | 387 | 128 | 464 | 2.57e-13 | 71.6 |
Find 96 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATCTATGATGCTGATTT+TGG | 0.174848 | 3_4:-3714742 | Msa0485910:CDS |
| AATCTTGGCGTCGAAGAATT+TGG | 0.180314 | 3_4:+3716932 | None:intergenic |
| GACTCATTCATAGATGATTT+TGG | 0.200306 | 3_4:-3716780 | Msa0485910:CDS |
| ATCTGTTGGGATATACAATT+TGG | 0.202242 | 3_4:+3715032 | None:intergenic |
| TGAGCACATGGAAGTGTTTA+AGG | 0.217722 | 3_4:-3714608 | Msa0485910:CDS |
| GATTGTGTTGCCAACTTCTT+TGG | 0.243766 | 3_4:+3715137 | None:intergenic |
| TGGCGTCTTCAAATCAATAT+TGG | 0.296957 | 3_4:+3717001 | None:intergenic |
| GTTGATTACTCGCACGGAAT+TGG | 0.305256 | 3_4:-3716714 | Msa0485910:CDS |
| GCCCCAGGTCCCATGAAAAT+TGG | 0.308839 | 3_4:+3714709 | None:intergenic |
| TATCTAGCGGATGGAGCTTC+TGG | 0.323110 | 3_4:-3715395 | Msa0485910:CDS |
| CATGGAAGTGTTTAAGGAAT+TGG | 0.330065 | 3_4:-3714602 | Msa0485910:CDS |
| CTCCCATCATTTGTTGAGCT+TGG | 0.337911 | 3_4:+3714658 | None:intergenic |
| AACCTTGATCTTCCATCTGT+TGG | 0.339884 | 3_4:+3715018 | None:intergenic |
| ACGCTGGGCGTGTGCACATT+TGG | 0.345761 | 3_4:+3716981 | None:intergenic |
| GTATCCCCTCCTAGTGTTGC+AGG | 0.361289 | 3_4:-3716688 | Msa0485910:intron |
| CAACTAACGATCGCAAGATT+TGG | 0.361643 | 3_4:+3714775 | None:intergenic |
| GAGAGCTTTCTTCATAATCT+TGG | 0.393839 | 3_4:+3716917 | None:intergenic |
| AGATCACTTGCTAGAGCTAT+AGG | 0.414190 | 3_4:+3714943 | None:intergenic |
| CTTGTTACATTCTCTGAGCC+AGG | 0.415957 | 3_4:+3715210 | None:intergenic |
| AGATGTTAGCTGGTCATGTT+TGG | 0.416361 | 3_4:-3715098 | Msa0485910:CDS |
| AAGCTCCATCCGCTAGATAA+TGG | 0.417712 | 3_4:+3715399 | None:intergenic |
| CAAATCTTGCGATCGTTAGT+TGG | 0.432391 | 3_4:-3714774 | Msa0485910:CDS |
| CAATTTGGTTTCTTGATCAT+CGG | 0.436135 | 3_4:+3715047 | None:intergenic |
| ATTCCAAGCTCAACAAATGA+TGG | 0.437823 | 3_4:-3714661 | Msa0485910:CDS |
| ACCTTGATCTTCCATCTGTT+GGG | 0.438044 | 3_4:+3715019 | None:intergenic |
| CCAAAATCAGCATCATAGAT+TGG | 0.443349 | 3_4:+3714742 | None:intergenic |
| AATTTGGTTTCTTGATCATC+GGG | 0.446925 | 3_4:+3715048 | None:intergenic |
| AAATCTTGCGATCGTTAGTT+GGG | 0.456385 | 3_4:-3714773 | Msa0485910:CDS |
| AAATGATGGGAGTTTATCTC+TGG | 0.468887 | 3_4:-3714647 | Msa0485910:CDS |
| GGACCTGGGGCTGATTGTGA+TGG | 0.472141 | 3_4:-3714697 | Msa0485910:CDS |
| GGCGTCGAAGAATTTGGAAA+TGG | 0.476256 | 3_4:+3716938 | None:intergenic |
| GAAGAATTTGGAAATGGTGT+TGG | 0.485713 | 3_4:+3716944 | None:intergenic |
| GAGGAGTCTCACTAGGTGTT+GGG | 0.500601 | 3_4:-3715427 | Msa0485910:CDS |
| AGATTGACTGCGACGGTCAA+GGG | 0.512197 | 3_4:-3716827 | Msa0485910:CDS |
| GACTTGAGAAGATGATCGAT+GGG | 0.512591 | 3_4:+3719504 | None:intergenic |
| GTCTCATTCTATCCAATGGC+AGG | 0.512688 | 3_4:-3716882 | Msa0485910:CDS |
| GTTGCAACCTCCACTTCCAT+CGG | 0.513383 | 3_4:-3714998 | Msa0485910:CDS |
| ACCACTTATGAGATGTTAGC+TGG | 0.515378 | 3_4:-3715108 | Msa0485910:CDS |
| CCGAAGTAACCCGATGGAAG+TGG | 0.519068 | 3_4:+3714988 | None:intergenic |
| TTGTTACATTCTCTGAGCCA+GGG | 0.519910 | 3_4:+3715211 | None:intergenic |
| CCCATTGTTGATTACTCGCA+CGG | 0.520681 | 3_4:-3716720 | Msa0485910:CDS |
| TTGCAACCTCCACTTCCATC+GGG | 0.527792 | 3_4:-3714997 | Msa0485910:CDS |
| AGGTTGCACGACAGAGGGTG+TGG | 0.528209 | 3_4:-3717028 | Msa0485910:CDS |
| ACCAGCTAACATCTCATAAG+TGG | 0.532159 | 3_4:+3715107 | None:intergenic |
| GGAGGAGTCTCACTAGGTGT+TGG | 0.533578 | 3_4:-3715428 | Msa0485910:CDS |
| GAGATTGACTGCGACGGTCA+AGG | 0.536807 | 3_4:-3716828 | Msa0485910:CDS |
| TGTCGTGCAACCTCCTCTGA+TGG | 0.537379 | 3_4:+3717038 | None:intergenic |
| TCACAATGCATTGTTGCGAA+TGG | 0.539746 | 3_4:-3714884 | Msa0485910:CDS |
| CCGTGCGAGTAATCAACAAT+GGG | 0.543465 | 3_4:+3716720 | None:intergenic |
| CTGCTTACAGCATACCATGT+TGG | 0.546067 | 3_4:+3714910 | None:intergenic |
| TGAAACATACCTGCAACACT+AGG | 0.550704 | 3_4:+3716679 | None:intergenic |
| AAAGCTAAGTCCAAAGAAGT+TGG | 0.554521 | 3_4:-3715147 | Msa0485910:CDS |
| AGACTTGAGAAGATGATCGA+TGG | 0.563265 | 3_4:+3719503 | None:intergenic |
| TTCCAAGCTCAACAAATGAT+GGG | 0.564691 | 3_4:-3714660 | Msa0485910:CDS |
| GCTTGTCTCATTCTATCCAA+TGG | 0.577382 | 3_4:-3716886 | Msa0485910:CDS |
| GACACTTAACATTAGCGTTG+CGG | 0.578284 | 3_4:+3714797 | None:intergenic |
| TGTTACATTCTCTGAGCCAG+GGG | 0.579400 | 3_4:+3715212 | None:intergenic |
| CCACTTCCATCGGGTTACTT+CGG | 0.580903 | 3_4:-3714988 | Msa0485910:CDS |
| TGATCGATGGGGAGGAGCAG+AGG | 0.581841 | 3_4:+3719516 | None:intergenic |
| ATGCACCATTATCTAGCGGA+TGG | 0.586149 | 3_4:-3715404 | Msa0485910:CDS |
| TTCTCTTCAACATGAGCACA+TGG | 0.587094 | 3_4:-3714620 | Msa0485910:CDS |
| AAATGTGGAGGAGTCTCACT+AGG | 0.587340 | 3_4:-3715434 | Msa0485910:CDS |
| TAAGATGGTGCAACCATCAG+AGG | 0.588848 | 3_4:-3717051 | Msa0485910:CDS |
| AACATACCTGCAACACTAGG+AGG | 0.589335 | 3_4:+3716682 | None:intergenic |
| CAGGTAACATACTTCAAATG+TGG | 0.592022 | 3_4:-3715449 | Msa0485910:CDS |
| CTTCTCAAGTCTCAACCTCA+AGG | 0.592352 | 3_4:-3719492 | Msa0485910:intron |
| GTATTCACTTCATCAATACA+TGG | 0.592850 | 3_4:-3715373 | Msa0485910:CDS |
| AGTTTGCACAAGTGCAATGT+GGG | 0.593249 | 3_4:+3716747 | None:intergenic |
| AAATTGTATATCCCAACAGA+TGG | 0.596360 | 3_4:-3715030 | Msa0485910:CDS |
| TAAGTGTTGTGTTGTTGTCG+TGG | 0.596711 | 3_4:+3719557 | None:intergenic |
| TCCCAACAGATGGAAGATCA+AGG | 0.597699 | 3_4:-3715020 | Msa0485910:CDS |
| ACATACCTGCAACACTAGGA+GGG | 0.599464 | 3_4:+3716683 | None:intergenic |
| GGTTCTATAGAAGTAAACGC+TGG | 0.599513 | 3_4:+3716965 | None:intergenic |
| TCCGTGCGAGTAATCAACAA+TGG | 0.601479 | 3_4:+3716719 | None:intergenic |
| GATTGACTGCGACGGTCAAG+GGG | 0.613982 | 3_4:-3716826 | Msa0485910:CDS |
| GTTCTATAGAAGTAAACGCT+GGG | 0.614614 | 3_4:+3716966 | None:intergenic |
| AGAGGAGGTTGCACGACAGA+GGG | 0.614646 | 3_4:-3717033 | Msa0485910:CDS |
| CGTCGCAGTCAATCTCCACT+CGG | 0.618119 | 3_4:+3716835 | None:intergenic |
| AGTCCATCACAATCAGCCCC+AGG | 0.618805 | 3_4:+3714694 | None:intergenic |
| AAATGTGAGAGATTCTAAGA+TGG | 0.628367 | 3_4:-3717066 | Msa0485910:CDS |
| CAGAGGAGGTTGCACGACAG+AGG | 0.628673 | 3_4:-3717034 | Msa0485910:CDS |
| TGAGAAGATGATCGATGGGG+AGG | 0.633457 | 3_4:+3719508 | None:intergenic |
| CATACCTGCAACACTAGGAG+GGG | 0.639094 | 3_4:+3716684 | None:intergenic |
| AAGTAACCCGATGGAAGTGG+AGG | 0.642861 | 3_4:+3714991 | None:intergenic |
| GTAACATACTTCAAATGTGG+AGG | 0.650078 | 3_4:-3715446 | Msa0485910:CDS |
| AAGTTTGCACAAGTGCAATG+TGG | 0.654616 | 3_4:+3716746 | None:intergenic |
| GTTACATTCTCTGAGCCAGG+GGG | 0.664833 | 3_4:+3715213 | None:intergenic |
| GATGGTGCAACCATCAGAGG+AGG | 0.670764 | 3_4:-3717048 | Msa0485910:CDS |
| ATCTCATGTCAAAACCAACA+TGG | 0.673675 | 3_4:-3714924 | Msa0485910:CDS |
| ACATTGCCGAAGTAACCCGA+TGG | 0.677759 | 3_4:+3714982 | None:intergenic |
| TATGAAGAAAGCTCTCAGCA+AGG | 0.680412 | 3_4:-3716910 | Msa0485910:CDS |
| TTACGACAAAGAGGACCGAG+TGG | 0.693636 | 3_4:-3716850 | Msa0485910:CDS |
| TGGGATGCACCATTATCTAG+CGG | 0.698386 | 3_4:-3715408 | Msa0485910:CDS |
| ACTTGAGAAGATGATCGATG+GGG | 0.732649 | 3_4:+3719505 | None:intergenic |
| ACTTGCTAGAGCTATAGGTG+CGG | 0.736048 | 3_4:+3714948 | None:intergenic |
| CGAGTGGAGATTGACTGCGA+CGG | 0.747066 | 3_4:-3716834 | Msa0485910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTATATATAAATAT+TGG | + | chr3_4:3714751-3714770 | None:intergenic | 0.0% |
| !! | TTTATATATAAATATTGGAA+TGG | + | chr3_4:3714746-3714765 | None:intergenic | 10.0% |
| !!! | ATATAAATAAAATGTAGTTT+TGG | - | chr3_4:3714759-3714778 | Msa0485910:CDS | 10.0% |
| !!! | TTTTTTAAAATCAAAACTTT+TGG | - | chr3_4:3714820-3714839 | Msa0485910:CDS | 10.0% |
| !! | ACAAATTATTCAAATTAAAA+AGG | + | chr3_4:3715433-3715452 | None:intergenic | 10.0% |
| !!! | TTTTAGCATATAATTTTATT+TGG | + | chr3_4:3716582-3716601 | None:intergenic | 10.0% |
| !! | ATGAAAATAATAAAGAAACA+TGG | + | chr3_4:3714685-3714704 | None:intergenic | 15.0% |
| !!! | GACAATTAATTACTATTTTA+AGG | + | chr3_4:3714877-3714896 | None:intergenic | 15.0% |
| !!! | ATTAATTGTCCAAATTTTTT+AGG | - | chr3_4:3714887-3714906 | Msa0485910:CDS | 15.0% |
| !! | ATCAATCTATTATATTTCTT+TGG | - | chr3_4:3717561-3717580 | Msa0485910:intron | 15.0% |
| !! | TTATTAAATGAATCTTAAAG+TGG | - | chr3_4:3717667-3717686 | Msa0485910:intron | 15.0% |
| !! | GAAAATATCAAAAACTAATT+TGG | + | chr3_4:3717941-3717960 | None:intergenic | 15.0% |
| !! | AATTTGAGTAAAGATAATTA+TGG | - | chr3_4:3718072-3718091 | Msa0485910:intron | 15.0% |
| !! | AAATAAAAAACAGATGTATT+AGG | - | chr3_4:3718569-3718588 | Msa0485910:intron | 15.0% |
| !! | CACAACAAATTTGATATTAA+AGG | + | chr3_4:3714847-3714866 | None:intergenic | 20.0% |
| !!! | TATCAAATTTGTTGTGATTT+TGG | - | chr3_4:3714851-3714870 | Msa0485910:CDS | 20.0% |
| !!! | TATTACATTGGTTACAATTA+TGG | + | chr3_4:3714953-3714972 | None:intergenic | 20.0% |
| !!! | TTGGTCTTTAATTATTACAT+TGG | + | chr3_4:3714965-3714984 | None:intergenic | 20.0% |
| !!! | TTTTTATCCTTCATTTATTG+AGG | + | chr3_4:3715315-3715334 | None:intergenic | 20.0% |
| !! | TTTGCAAAAAAAGATTGAAT+TGG | + | chr3_4:3715638-3715657 | None:intergenic | 20.0% |
| !! | TATATAAACACTTACTAGTT+GGG | + | chr3_4:3715792-3715811 | None:intergenic | 20.0% |
| !! | TTATATAAACACTTACTAGT+TGG | + | chr3_4:3715793-3715812 | None:intergenic | 20.0% |
| !! | AACTAGTAAGTGTTTATATA+AGG | - | chr3_4:3715792-3715811 | Msa0485910:intron | 20.0% |
| !! | ACTAGTAAGTGTTTATATAA+GGG | - | chr3_4:3715793-3715812 | Msa0485910:intron | 20.0% |
| !! | TAATCTAAATTGGAAATATC+CGG | + | chr3_4:3716015-3716034 | None:intergenic | 20.0% |
| !! | ATTATATATCCATCAACAAA+AGG | - | chr3_4:3716657-3716676 | Msa0485910:intron | 20.0% |
| !!! | GACAAATGAATAATTTTGAT+TGG | - | chr3_4:3716809-3716828 | Msa0485910:CDS | 20.0% |
| !! | TAAACCATTTACAATTATTG+AGG | + | chr3_4:3717836-3717855 | None:intergenic | 20.0% |
| !!! | ATTTGGTATTATTTTTTGTC+AGG | + | chr3_4:3717924-3717943 | None:intergenic | 20.0% |
| !! | ATATATATATATAGATGGAC+AGG | + | chr3_4:3718149-3718168 | None:intergenic | 20.0% |
| !! | GACTTTTAGCCTAAAAAATT+TGG | + | chr3_4:3714899-3714918 | None:intergenic | 25.0% |
| !! | GCTTTTATAATCAAGCTATT+TGG | + | chr3_4:3714984-3715003 | None:intergenic | 25.0% |
| ! | CAATAAAAACTTGATATACG+TGG | - | chr3_4:3715204-3715223 | Msa0485910:CDS | 25.0% |
| ! | AGGATAAAAAAACTTAGAGA+AGG | - | chr3_4:3715325-3715344 | Msa0485910:intron | 25.0% |
| ! | TTCTTTCACTAATTGTGTTA+TGG | - | chr3_4:3715354-3715373 | Msa0485910:intron | 25.0% |
| ! | AACACTTATACTTTAATCGT+TGG | + | chr3_4:3715493-3715512 | None:intergenic | 25.0% |
| !!! | AATCTTTTTTTGCAAACGTA+TGG | - | chr3_4:3715642-3715661 | Msa0485910:intron | 25.0% |
| ! | TTTATTGAGTTTAACCATGT+TGG | - | chr3_4:3715668-3715687 | Msa0485910:intron | 25.0% |
| ! | GTTAATTCTAGTGAGAAAAT+TGG | - | chr3_4:3715698-3715717 | Msa0485910:intron | 25.0% |
| ! | ATATAAACACTTACTAGTTG+GGG | + | chr3_4:3715791-3715810 | None:intergenic | 25.0% |
| ! | TAAGTCTGCTTAATCTAAAT+TGG | + | chr3_4:3716025-3716044 | None:intergenic | 25.0% |
| ! | AGAGTTCATAACAAAAAAAC+GGG | + | chr3_4:3716110-3716129 | None:intergenic | 25.0% |
| ! | CAGAGTTCATAACAAAAAAA+CGG | + | chr3_4:3716111-3716130 | None:intergenic | 25.0% |
| ! | AATGATTCGTTAACACAAAT+CGG | + | chr3_4:3716229-3716248 | None:intergenic | 25.0% |
| !!! | TTTTATCCACTTTTCTTGAT+GGG | - | chr3_4:3716853-3716872 | Msa0485910:CDS | 25.0% |
| !!! | TTATGATCATCGTAGTTTTT+TGG | + | chr3_4:3717059-3717078 | None:intergenic | 25.0% |
| ! | CAAACCTCAATAATTGTAAA+TGG | - | chr3_4:3717829-3717848 | Msa0485910:intron | 25.0% |
| ! | TCTGACTCACTATAATATAT+AGG | + | chr3_4:3717986-3718005 | None:intergenic | 25.0% |
| !!! | TCCTCGATATTTTTATATCT+GGG | + | chr3_4:3718020-3718039 | None:intergenic | 25.0% |
| ! | ATAATTATGGAGACCAAAAT+GGG | - | chr3_4:3718085-3718104 | Msa0485910:intron | 25.0% |
| !! | AAAGAAAAGATGATTTTGAG+TGG | - | chr3_4:3718181-3718200 | Msa0485910:intron | 25.0% |
| !! | CTCATATGCAAATTTGTTTA+AGG | + | chr3_4:3718228-3718247 | None:intergenic | 25.0% |
| ! | TAATCAAAATAAGAGACGTT+TGG | - | chr3_4:3718365-3718384 | Msa0485910:intron | 25.0% |
| ! | ACACAAAAATGATACCATAT+AGG | + | chr3_4:3718608-3718627 | None:intergenic | 25.0% |
| ! | AATTCAACGTGATCAAAAAT+GGG | + | chr3_4:3718876-3718895 | None:intergenic | 25.0% |
| TGTAAGTGTGACAAAATAAG+TGG | + | chr3_4:3714786-3714805 | None:intergenic | 30.0% | |
| !!! | ACTCATCAGTTTTGAGTTAA+AGG | - | chr3_4:3715584-3715603 | Msa0485910:intron | 30.0% |
| !!! | CTCATCAGTTTTGAGTTAAA+GGG | - | chr3_4:3715585-3715604 | Msa0485910:intron | 30.0% |
| AATTAACTAGTGTTCCAACA+TGG | + | chr3_4:3715685-3715704 | None:intergenic | 30.0% | |
| GACTTAAAAATGTCTCACAT+TGG | - | chr3_4:3715758-3715777 | Msa0485910:intron | 30.0% | |
| AGTAAGTGTTTATATAAGGG+TGG | - | chr3_4:3715796-3715815 | Msa0485910:intron | 30.0% | |
| GTAAGTGTTTATATAAGGGT+GGG | - | chr3_4:3715797-3715816 | Msa0485910:intron | 30.0% | |
| TAAGTGTTTATATAAGGGTG+GGG | - | chr3_4:3715798-3715817 | Msa0485910:intron | 30.0% | |
| !! | AACAAAAAAACGGGTTACTT+GGG | + | chr3_4:3716101-3716120 | None:intergenic | 30.0% |
| !! | TAACAAAAAAACGGGTTACT+TGG | + | chr3_4:3716102-3716121 | None:intergenic | 30.0% |
| ATATACCGAACGAAATTACT+GGG | + | chr3_4:3716538-3716557 | None:intergenic | 30.0% | |
| AATATACCGAACGAAATTAC+TGG | + | chr3_4:3716539-3716558 | None:intergenic | 30.0% | |
| ATATATCCATCAACAAAAGG+TGG | - | chr3_4:3716660-3716679 | Msa0485910:intron | 30.0% | |
| !!! | TTCATAATACATGTCGCTTT+TGG | + | chr3_4:3716746-3716765 | None:intergenic | 30.0% |
| AAGCGACATGTATTATGAAA+CGG | - | chr3_4:3716747-3716766 | Msa0485910:CDS | 30.0% | |
| AAGTGGATAAAAGTAACTCA+TGG | + | chr3_4:3716845-3716864 | None:intergenic | 30.0% | |
| !! | CTTTTATCCACTTTTCTTGA+TGG | - | chr3_4:3716852-3716871 | Msa0485910:CDS | 30.0% |
| !! | ACCATTATAGTTGATAGTGT+AGG | - | chr3_4:3717027-3717046 | Msa0485910:CDS | 30.0% |
| TCCTACACTATCAACTATAA+TGG | + | chr3_4:3717031-3717050 | None:intergenic | 30.0% | |
| ! | AAATGTGAGAGATTCTAAGA+TGG | - | chr3_4:3717077-3717096 | Msa0485910:CDS | 30.0% |
| ! | GACTCATTCATAGATGATTT+TGG | - | chr3_4:3717363-3717382 | Msa0485910:intron | 30.0% |
| AGCGAGTAGTTAATAAGATT+TGG | - | chr3_4:3717715-3717734 | Msa0485910:intron | 30.0% | |
| TCCCAGATATAAAAATATCG+AGG | - | chr3_4:3718016-3718035 | Msa0485910:intron | 30.0% | |
| !! | GTCCTCGATATTTTTATATC+TGG | + | chr3_4:3718021-3718040 | None:intergenic | 30.0% |
| GATAATTATGGAGACCAAAA+TGG | - | chr3_4:3718084-3718103 | Msa0485910:intron | 30.0% | |
| ! | CAAAGAATTAATGCCCATTT+TGG | + | chr3_4:3718101-3718120 | None:intergenic | 30.0% |
| TTTATCAAAGATAATTCGCG+TGG | - | chr3_4:3718122-3718141 | Msa0485910:intron | 30.0% | |
| ! | ATGGTGCAATATTTTGTAGA+TGG | - | chr3_4:3718496-3718515 | Msa0485910:intron | 30.0% |
| GTGATAGTAGAATACCTATA+TGG | - | chr3_4:3718591-3718610 | Msa0485910:intron | 30.0% | |
| GTATTCACTTCATCAATACA+TGG | - | chr3_4:3718770-3718789 | Msa0485910:intron | 30.0% | |
| GAATTCAACGTGATCAAAAA+TGG | + | chr3_4:3718877-3718896 | None:intergenic | 30.0% | |
| ! | AATTTGGTTTCTTGATCATC+GGG | + | chr3_4:3719098-3719117 | None:intergenic | 30.0% |
| ! | CAATTTGGTTTCTTGATCAT+CGG | + | chr3_4:3719099-3719118 | None:intergenic | 30.0% |
| ATCTGTTGGGATATACAATT+TGG | + | chr3_4:3719114-3719133 | None:intergenic | 30.0% | |
| AAATTGTATATCCCAACAGA+TGG | - | chr3_4:3719113-3719132 | Msa0485910:intron | 30.0% | |
| ! | AGGCTAAAAGTCATCACTTT+TGG | - | chr3_4:3714907-3714926 | Msa0485910:CDS | 35.0% |
| !! | TTTGATTTCGAGTCTTGTTG+GGG | + | chr3_4:3715084-3715103 | None:intergenic | 35.0% |
| !! | GTTTGATTTCGAGTCTTGTT+GGG | + | chr3_4:3715085-3715104 | None:intergenic | 35.0% |
| ! | TGTTTGATTTCGAGTCTTGT+TGG | + | chr3_4:3715086-3715105 | None:intergenic | 35.0% |
| AAAGAAAAAAGAGACGCAGA+AGG | - | chr3_4:3715250-3715269 | Msa0485910:intron | 35.0% | |
| AAGAAAAAAGAGACGCAGAA+GGG | - | chr3_4:3715251-3715270 | Msa0485910:intron | 35.0% | |
| CACTCATCCTCAATAAATGA+AGG | - | chr3_4:3715305-3715324 | Msa0485910:intron | 35.0% | |
| GTCTCTTTACTTTACAACTC+AGG | - | chr3_4:3715454-3715473 | Msa0485910:intron | 35.0% | |
| AGTACCCATTCTTTCATAAC+AGG | - | chr3_4:3715551-3715570 | Msa0485910:intron | 35.0% | |
| GTACCCATTCTTTCATAACA+GGG | - | chr3_4:3715552-3715571 | Msa0485910:intron | 35.0% | |
| TACCCATTCTTTCATAACAG+GGG | - | chr3_4:3715553-3715572 | Msa0485910:intron | 35.0% | |
| AACTCAAAACTGATGAGTCA+TGG | + | chr3_4:3715582-3715601 | None:intergenic | 35.0% | |
| ACTATGAGAAACTAGTGTGT+GGG | - | chr3_4:3715730-3715749 | Msa0485910:intron | 35.0% | |
| ATTCACCCGTTCACAAAAAT+GGG | + | chr3_4:3715852-3715871 | None:intergenic | 35.0% | |
| ! | AATTTTCTGGATACGCGTTT+TGG | + | chr3_4:3715992-3716011 | None:intergenic | 35.0% |
| ! | TGGAAATATCCGGAATTTTC+TGG | + | chr3_4:3716005-3716024 | None:intergenic | 35.0% |
| !! | ACAAAAAAACGGGTTACTTG+GGG | + | chr3_4:3716100-3716119 | None:intergenic | 35.0% |
| ! | TCCTTTTATAGGCAGAGTAT+AGG | + | chr3_4:3716134-3716153 | None:intergenic | 35.0% |
| !! | ATTTGGTGTGAAGAATGAGT+GGG | + | chr3_4:3716165-3716184 | None:intergenic | 35.0% |
| GAAACATCAACTGTGAGATT+TGG | + | chr3_4:3716182-3716201 | None:intergenic | 35.0% | |
| ATTCGTTAACACAAATCGGA+GGG | + | chr3_4:3716225-3716244 | None:intergenic | 35.0% | |
| AACGATTGAACCATACTTTG+AGG | - | chr3_4:3716358-3716377 | Msa0485910:intron | 35.0% | |
| GAGAATTACACCTCAAAGTA+TGG | + | chr3_4:3716371-3716390 | None:intergenic | 35.0% | |
| ATATACTCGAAACAGTGATC+TGG | - | chr3_4:3716413-3716432 | Msa0485910:intron | 35.0% | |
| TATACTCGAAACAGTGATCT+GGG | - | chr3_4:3716414-3716433 | Msa0485910:intron | 35.0% | |
| ! | TTCTATCCACCTTTTGTTGA+TGG | + | chr3_4:3716669-3716688 | None:intergenic | 35.0% |
| GACATGTATTATGAAACGGA+TGG | - | chr3_4:3716751-3716770 | Msa0485910:CDS | 35.0% | |
| TGGCGTCTTCAAATCAATAT+TGG | + | chr3_4:3717145-3717164 | None:intergenic | 35.0% | |
| GTTCTATAGAAGTAAACGCT+GGG | + | chr3_4:3717180-3717199 | None:intergenic | 35.0% | |
| GAAGAATTTGGAAATGGTGT+TGG | + | chr3_4:3717202-3717221 | None:intergenic | 35.0% | |
| GAGAGCTTTCTTCATAATCT+TGG | + | chr3_4:3717229-3717248 | None:intergenic | 35.0% | |
| !! | TCGTTTTTGTTACGACAAAG+AGG | - | chr3_4:3717284-3717303 | Msa0485910:intron | 35.0% |
| ATCTTATTAACTACTCGCTC+TGG | + | chr3_4:3717714-3717733 | None:intergenic | 35.0% | |
| CATGAATTCCTCTCGAAAAT+GGG | + | chr3_4:3717807-3717826 | None:intergenic | 35.0% | |
| !! | CATTTTCGAGAGGAATTCAT+GGG | - | chr3_4:3717806-3717825 | Msa0485910:intron | 35.0% |
| TGTGTTGCGAGAAAATTATG+CGG | + | chr3_4:3717893-3717912 | None:intergenic | 35.0% | |
| ! | GTGCAATATTTTGTAGATGG+AGG | - | chr3_4:3718499-3718518 | Msa0485910:intron | 35.0% |
| ! | TATTTTGTAGATGGAGGAGA+TGG | - | chr3_4:3718505-3718524 | Msa0485910:intron | 35.0% |
| CAGGTAACATACTTCAAATG+TGG | - | chr3_4:3718694-3718713 | Msa0485910:intron | 35.0% | |
| GTAACATACTTCAAATGTGG+AGG | - | chr3_4:3718697-3718716 | Msa0485910:intron | 35.0% | |
| AGTAGTGTCCGATCAATAAA+TGG | + | chr3_4:3718832-3718851 | None:intergenic | 35.0% | |
| AAAGCTAAGTCCAAAGAAGT+TGG | - | chr3_4:3718996-3719015 | Msa0485910:intron | 35.0% | |
| ATCTCATGTCAAAACCAACA+TGG | - | chr3_4:3719219-3719238 | Msa0485910:intron | 35.0% | |
| AAATCTTGCGATCGTTAGTT+GGG | - | chr3_4:3719370-3719389 | Msa0485910:intron | 35.0% | |
| CCAAAATCAGCATCATAGAT+TGG | + | chr3_4:3719404-3719423 | None:intergenic | 35.0% | |
| !!! | CCAATCTATGATGCTGATTT+TGG | - | chr3_4:3719401-3719420 | Msa0485910:intron | 35.0% |
| !!! | TCTATGATGCTGATTTTGGT+TGG | - | chr3_4:3719405-3719424 | Msa0485910:intron | 35.0% |
| !!! | CTATGATGCTGATTTTGGTT+GGG | - | chr3_4:3719406-3719425 | Msa0485910:intron | 35.0% |
| !!! | TATGATGCTGATTTTGGTTG+GGG | - | chr3_4:3719407-3719426 | Msa0485910:intron | 35.0% |
| ATTCCAAGCTCAACAAATGA+TGG | - | chr3_4:3719482-3719501 | Msa0485910:intron | 35.0% | |
| TTCCAAGCTCAACAAATGAT+GGG | - | chr3_4:3719483-3719502 | Msa0485910:intron | 35.0% | |
| ! | AAATGATGGGAGTTTATCTC+TGG | - | chr3_4:3719496-3719515 | Msa0485910:five_prime_UTR | 35.0% |
| !! | CATGGAAGTGTTTAAGGAAT+TGG | - | chr3_4:3719541-3719560 | Msa0485910:five_prime_UTR | 35.0% |
| ACTTGAGAAGATGATCGATG+GGG | + | chr3_4:3714641-3714660 | None:intergenic | 40.0% | |
| GACTTGAGAAGATGATCGAT+GGG | + | chr3_4:3714642-3714661 | None:intergenic | 40.0% | |
| AGACTTGAGAAGATGATCGA+TGG | + | chr3_4:3714643-3714662 | None:intergenic | 40.0% | |
| AGAAAAAAGAGACGCAGAAG+GGG | - | chr3_4:3715252-3715271 | Msa0485910:intron | 40.0% | |
| CACCCCTGTTATGAAAGAAT+GGG | + | chr3_4:3715558-3715577 | None:intergenic | 40.0% | |
| ACACCCCTGTTATGAAAGAA+TGG | + | chr3_4:3715559-3715578 | None:intergenic | 40.0% | |
| CACTATGAGAAACTAGTGTG+TGG | - | chr3_4:3715729-3715748 | Msa0485910:intron | 40.0% | |
| CATTCACCCGTTCACAAAAA+TGG | + | chr3_4:3715853-3715872 | None:intergenic | 40.0% | |
| AACGCGTATCCAGAAAATTC+CGG | - | chr3_4:3715993-3716012 | Msa0485910:intron | 40.0% | |
| GCCTATACTCTGCCTATAAA+AGG | - | chr3_4:3716130-3716149 | Msa0485910:intron | 40.0% | |
| ! | TTTGGTGTGAAGAATGAGTG+GGG | + | chr3_4:3716164-3716183 | None:intergenic | 40.0% |
| !! | GATTTGGTGTGAAGAATGAG+TGG | + | chr3_4:3716166-3716185 | None:intergenic | 40.0% |
| GATTCGTTAACACAAATCGG+AGG | + | chr3_4:3716226-3716245 | None:intergenic | 40.0% | |
| TAGAAGATGAAGAAACCGAC+GGG | + | chr3_4:3716275-3716294 | None:intergenic | 40.0% | |
| GTAGAAGATGAAGAAACCGA+CGG | + | chr3_4:3716276-3716295 | None:intergenic | 40.0% | |
| TAGTCTACCTTGCACAAACT+AGG | - | chr3_4:3716466-3716485 | Msa0485910:intron | 40.0% | |
| AGTCTACCTTGCACAAACTA+GGG | - | chr3_4:3716467-3716486 | Msa0485910:intron | 40.0% | |
| !! | GCTTTCTTTAAGACGTTTCG+CGG | + | chr3_4:3716498-3716517 | None:intergenic | 40.0% |
| ACTCACCCAGTAATTTCGTT+CGG | - | chr3_4:3716530-3716549 | Msa0485910:intron | 40.0% | |
| TGTTCACCCATCAAGAAAAG+TGG | + | chr3_4:3716862-3716881 | None:intergenic | 40.0% | |
| GGTTCTATAGAAGTAAACGC+TGG | + | chr3_4:3717181-3717200 | None:intergenic | 40.0% | |
| ! | AATCTTGGCGTCGAAGAATT+TGG | + | chr3_4:3717214-3717233 | None:intergenic | 40.0% |
| TATGAAGAAAGCTCTCAGCA+AGG | - | chr3_4:3717233-3717252 | Msa0485910:intron | 40.0% | |
| GCTTGTCTCATTCTATCCAA+TGG | - | chr3_4:3717257-3717276 | Msa0485910:intron | 40.0% | |
| TAACAAAAACGACCTGCCAT+TGG | + | chr3_4:3717276-3717295 | None:intergenic | 40.0% | |
| AGTTTGCACAAGTGCAATGT+GGG | + | chr3_4:3717399-3717418 | None:intergenic | 40.0% | |
| AAGTTTGCACAAGTGCAATG+TGG | + | chr3_4:3717400-3717419 | None:intergenic | 40.0% | |
| TGAAACATACCTGCAACACT+AGG | + | chr3_4:3717467-3717486 | None:intergenic | 40.0% | |
| !! | CATTATCTCCCATTTTCGAG+AGG | - | chr3_4:3717796-3717815 | Msa0485910:intron | 40.0% |
| CCATGAATTCCTCTCGAAAA+TGG | + | chr3_4:3717808-3717827 | None:intergenic | 40.0% | |
| !! | CCATTTTCGAGAGGAATTCA+TGG | - | chr3_4:3717805-3717824 | Msa0485910:intron | 40.0% |
| GTGTTGCGAGAAAATTATGC+GGG | + | chr3_4:3717892-3717911 | None:intergenic | 40.0% | |
| ATAAATTAGGACGAGTCCAG+TGG | + | chr3_4:3718453-3718472 | None:intergenic | 40.0% | |
| ACTGGACTCGTCCTAATTTA+TGG | - | chr3_4:3718452-3718471 | Msa0485910:intron | 40.0% | |
| !! | TAATTTATGGCGGATGGTGA+CGG | - | chr3_4:3718465-3718484 | Msa0485910:intron | 40.0% |
| CGAACTTTAACTATTTGCGC+AGG | - | chr3_4:3718675-3718694 | Msa0485910:intron | 40.0% | |
| CCATCCCACCATTTATTGAT+CGG | - | chr3_4:3718821-3718840 | Msa0485910:intron | 40.0% | |
| GTGTCCGATCAATAAATGGT+GGG | + | chr3_4:3718828-3718847 | None:intergenic | 40.0% | |
| AGTGTCCGATCAATAAATGG+TGG | + | chr3_4:3718829-3718848 | None:intergenic | 40.0% | |
| !! | TGATCAAAAATGGGTTGTGG+TGG | + | chr3_4:3718867-3718886 | None:intergenic | 40.0% |
| !! | ACGTGATCAAAAATGGGTTG+TGG | + | chr3_4:3718870-3718889 | None:intergenic | 40.0% |
| TGTTGTGGAATCTTCATGGA+TGG | + | chr3_4:3718909-3718928 | None:intergenic | 40.0% | |
| TTGTTACATTCTCTGAGCCA+GGG | + | chr3_4:3718935-3718954 | None:intergenic | 40.0% | |
| GATTGTGTTGCCAACTTCTT+TGG | + | chr3_4:3719009-3719028 | None:intergenic | 40.0% | |
| ACCACTTATGAGATGTTAGC+TGG | - | chr3_4:3719035-3719054 | Msa0485910:intron | 40.0% | |
| ACCAGCTAACATCTCATAAG+TGG | + | chr3_4:3719039-3719058 | None:intergenic | 40.0% | |
| AGATGTTAGCTGGTCATGTT+TGG | - | chr3_4:3719045-3719064 | Msa0485910:intron | 40.0% | |
| ACCTTGATCTTCCATCTGTT+GGG | + | chr3_4:3719127-3719146 | None:intergenic | 40.0% | |
| AACCTTGATCTTCCATCTGT+TGG | + | chr3_4:3719128-3719147 | None:intergenic | 40.0% | |
| ! | AGATCACTTGCTAGAGCTAT+AGG | + | chr3_4:3719203-3719222 | None:intergenic | 40.0% |
| TCACAATGCATTGTTGCGAA+TGG | - | chr3_4:3719259-3719278 | Msa0485910:intron | 40.0% | |
| GACACTTAACATTAGCGTTG+CGG | + | chr3_4:3719349-3719368 | None:intergenic | 40.0% | |
| CAACTAACGATCGCAAGATT+TGG | + | chr3_4:3719371-3719390 | None:intergenic | 40.0% | |
| CAAATCTTGCGATCGTTAGT+TGG | - | chr3_4:3719369-3719388 | Msa0485910:intron | 40.0% | |
| TTCTCTTCAACATGAGCACA+TGG | - | chr3_4:3719523-3719542 | Msa0485910:five_prime_UTR | 40.0% | |
| !! | TGAGCACATGGAAGTGTTTA+AGG | - | chr3_4:3719535-3719554 | Msa0485910:five_prime_UTR | 40.0% |
| CTTCTCAAGTCTCAACCTCA+AGG | - | chr3_4:3714651-3714670 | Msa0485910:CDS | 45.0% | |
| !! | AACATGGTGTCGTTACCTTG+AGG | + | chr3_4:3714669-3714688 | None:intergenic | 45.0% |
| CATCATCTTGTGCGATTGTG+CGG | + | chr3_4:3715139-3715158 | None:intergenic | 45.0% | |
| CGTGATTTCGTTGTCTTGTG+CGG | + | chr3_4:3715173-3715192 | None:intergenic | 45.0% | |
| CACAAAAATGGGTACCCCAA+GGG | + | chr3_4:3715841-3715860 | None:intergenic | 45.0% | |
| TCACAAAAATGGGTACCCCA+AGG | + | chr3_4:3715842-3715861 | None:intergenic | 45.0% | |
| !! | GGGGTACCCATTTTTGTGAA+CGG | - | chr3_4:3715843-3715862 | Msa0485910:intron | 45.0% |
| !! | GGGTACCCATTTTTGTGAAC+GGG | - | chr3_4:3715844-3715863 | Msa0485910:intron | 45.0% |
| TTTAATCCAAGACCCAAGCC+CGG | + | chr3_4:3715920-3715939 | None:intergenic | 45.0% | |
| ! | ACGCGTTTTACGCGTAACTT+GGG | + | chr3_4:3716051-3716070 | None:intergenic | 45.0% |
| ! | AACGCGTTTTACGCGTAACT+TGG | + | chr3_4:3716052-3716071 | None:intergenic | 45.0% |
| GCGTAAAACGCGTTTGCTTA+AGG | - | chr3_4:3716058-3716077 | Msa0485910:intron | 45.0% | |
| ! | CACAGTTGATGTTTCCTGTG+CGG | - | chr3_4:3716187-3716206 | Msa0485910:intron | 45.0% |
| TTGATCGAAGCCACTCGATA+CGG | + | chr3_4:3716339-3716358 | None:intergenic | 45.0% | |
| !! | TGATCTGGGCTGTTTTATCC+TGG | - | chr3_4:3716428-3716447 | Msa0485910:intron | 45.0% |
| ACGTCTTAAAGAAAGCGACC+TGG | - | chr3_4:3716502-3716521 | Msa0485910:intron | 45.0% | |
| TAAGATGGTGCAACCATCAG+AGG | - | chr3_4:3717092-3717111 | Msa0485910:exon | 45.0% | |
| ! | GGCGTCGAAGAATTTGGAAA+TGG | + | chr3_4:3717208-3717227 | None:intergenic | 45.0% |
| GTCTCATTCTATCCAATGGC+AGG | - | chr3_4:3717261-3717280 | Msa0485910:intron | 45.0% | |
| CCGTGCGAGTAATCAACAAT+GGG | + | chr3_4:3717426-3717445 | None:intergenic | 45.0% | |
| ! | CCCATTGTTGATTACTCGCA+CGG | - | chr3_4:3717423-3717442 | Msa0485910:intron | 45.0% |
| TCCGTGCGAGTAATCAACAA+TGG | + | chr3_4:3717427-3717446 | None:intergenic | 45.0% | |
| GTTGATTACTCGCACGGAAT+TGG | - | chr3_4:3717429-3717448 | Msa0485910:intron | 45.0% | |
| ACATACCTGCAACACTAGGA+GGG | + | chr3_4:3717463-3717482 | None:intergenic | 45.0% | |
| AACATACCTGCAACACTAGG+AGG | + | chr3_4:3717464-3717483 | None:intergenic | 45.0% | |
| GACAAAGAGAGATGGTGTTC+CGG | + | chr3_4:3718426-3718445 | None:intergenic | 45.0% | |
| GGACTCGTCCTAATTTATGG+CGG | - | chr3_4:3718455-3718474 | Msa0485910:intron | 45.0% | |
| ! | TCGTCCTAATTTATGGCGGA+TGG | - | chr3_4:3718459-3718478 | Msa0485910:intron | 45.0% |
| GTCACCATCCGCCATAAATT+AGG | + | chr3_4:3718466-3718485 | None:intergenic | 45.0% | |
| AAATGTGGAGGAGTCTCACT+AGG | - | chr3_4:3718709-3718728 | Msa0485910:intron | 45.0% | |
| TGGGATGCACCATTATCTAG+CGG | - | chr3_4:3718735-3718754 | Msa0485910:intron | 45.0% | |
| ATGCACCATTATCTAGCGGA+TGG | - | chr3_4:3718739-3718758 | Msa0485910:intron | 45.0% | |
| AAGCTCCATCCGCTAGATAA+TGG | + | chr3_4:3718747-3718766 | None:intergenic | 45.0% | |
| ACATGGTCAGATGTAACTCG+CGG | - | chr3_4:3718787-3718806 | Msa0485910:intron | 45.0% | |
| ! | CCGATCAATAAATGGTGGGA+TGG | + | chr3_4:3718824-3718843 | None:intergenic | 45.0% |
| !! | AAATGGGTTGTGGTGGATCA+CGG | + | chr3_4:3718860-3718879 | None:intergenic | 45.0% |
| TGTTACATTCTCTGAGCCAG+GGG | + | chr3_4:3718934-3718953 | None:intergenic | 45.0% | |
| CTTGTTACATTCTCTGAGCC+AGG | + | chr3_4:3718936-3718955 | None:intergenic | 45.0% | |
| TCCCAACAGATGGAAGATCA+AGG | - | chr3_4:3719123-3719142 | Msa0485910:intron | 45.0% | |
| ! | ACTTGCTAGAGCTATAGGTG+CGG | + | chr3_4:3719198-3719217 | None:intergenic | 45.0% |
| CTGCTTACAGCATACCATGT+TGG | + | chr3_4:3719236-3719255 | None:intergenic | 45.0% | |
| !!! | ATGCTGATTTTGGTTGGGGA+AGG | - | chr3_4:3719411-3719430 | Msa0485910:intron | 45.0% |
| ! | TTGGGGAAGGCCAATTTTCA+TGG | - | chr3_4:3719424-3719443 | Msa0485910:intron | 45.0% |
| ! | TGGGGAAGGCCAATTTTCAT+GGG | - | chr3_4:3719425-3719444 | Msa0485910:intron | 45.0% |
| ! | CTCCCATCATTTGTTGAGCT+TGG | + | chr3_4:3719488-3719507 | None:intergenic | 45.0% |
| !! | TATATATATATATATATAGA+TGG | + | chr3_4:3718154-3718173 | None:intergenic | 5.0% |
| TGAGAAGATGATCGATGGGG+AGG | + | chr3_4:3714638-3714657 | None:intergenic | 50.0% | |
| ! | CGCGTTTTACGCGTAACTTG+GGG | + | chr3_4:3716050-3716069 | None:intergenic | 50.0% |
| TCTACTCCTTTCTGTCCCGT+CGG | - | chr3_4:3716257-3716276 | Msa0485910:intron | 50.0% | |
| AAGAAACCGACGGGACAGAA+AGG | + | chr3_4:3716266-3716285 | None:intergenic | 50.0% | |
| TCTACTCCTTTCTGTCCCGT+CGG | - | chr3_4:3716257-3716276 | Msa0485910:intron | 50.0% | |
| ACCGCTCTATTCGAAACCGA+CGG | + | chr3_4:3716310-3716329 | None:intergenic | 50.0% | |
| !! | GGGCTGTTTTATCCTGGAGA+CGG | - | chr3_4:3716434-3716453 | Msa0485910:intron | 50.0% |
| ! | GCACTACCCTAGTTTGTGCA+AGG | + | chr3_4:3716476-3716495 | None:intergenic | 50.0% |
| TTACGACAAAGAGGACCGAG+TGG | - | chr3_4:3717293-3717312 | Msa0485910:intron | 50.0% | |
| AGATTGACTGCGACGGTCAA+GGG | - | chr3_4:3717316-3717335 | Msa0485910:intron | 50.0% | |
| CATACCTGCAACACTAGGAG+GGG | + | chr3_4:3717462-3717481 | None:intergenic | 50.0% | |
| GTGGAGGAGACAAAGAGAGA+TGG | + | chr3_4:3718434-3718453 | None:intergenic | 50.0% | |
| TCTCTCTTTGTCTCCTCCAC+TGG | - | chr3_4:3718434-3718453 | Msa0485910:intron | 50.0% | |
| AATTAGGACGAGTCCAGTGG+AGG | + | chr3_4:3718450-3718469 | None:intergenic | 50.0% | |
| !! | GATGGTGACGGTTGTGATGA+TGG | - | chr3_4:3718477-3718496 | Msa0485910:intron | 50.0% |
| GAGGAGTCTCACTAGGTGTT+GGG | - | chr3_4:3718716-3718735 | Msa0485910:intron | 50.0% | |
| ! | TATCTAGCGGATGGAGCTTC+TGG | - | chr3_4:3718748-3718767 | Msa0485910:intron | 50.0% |
| !! | AATGGGTTGTGGTGGATCAC+GGG | + | chr3_4:3718859-3718878 | None:intergenic | 50.0% |
| GGGCTGTTGTGGAATCTTCA+TGG | + | chr3_4:3718913-3718932 | None:intergenic | 50.0% | |
| GTTACATTCTCTGAGCCAGG+GGG | + | chr3_4:3718933-3718952 | None:intergenic | 50.0% | |
| GTTGCAACCTCCACTTCCAT+CGG | - | chr3_4:3719145-3719164 | Msa0485910:intron | 50.0% | |
| TTGCAACCTCCACTTCCATC+GGG | - | chr3_4:3719146-3719165 | Msa0485910:intron | 50.0% | |
| AAGTAACCCGATGGAAGTGG+AGG | + | chr3_4:3719155-3719174 | None:intergenic | 50.0% | |
| CCACTTCCATCGGGTTACTT+CGG | - | chr3_4:3719155-3719174 | Msa0485910:intron | 50.0% | |
| ACATTGCCGAAGTAACCCGA+TGG | + | chr3_4:3719164-3719183 | None:intergenic | 50.0% | |
| ! | AGGCCAATTTTCATGGGACC+TGG | - | chr3_4:3719431-3719450 | Msa0485910:intron | 50.0% |
| ! | GGCCAATTTTCATGGGACCT+GGG | - | chr3_4:3719432-3719451 | Msa0485910:intron | 50.0% |
| ! | GCCAATTTTCATGGGACCTG+GGG | - | chr3_4:3719433-3719452 | Msa0485910:intron | 50.0% |
| GACGCAGAAGGGGTGAATGT+AGG | - | chr3_4:3715262-3715281 | Msa0485910:intron | 55.0% | |
| ! | GGGGCGAGCTCTCCTTTTAT+AGG | + | chr3_4:3716145-3716164 | None:intergenic | 55.0% |
| GGAGAAGAGAGAAACCGCAC+AGG | + | chr3_4:3716204-3716223 | None:intergenic | 55.0% | |
| TCGAAACCGACGGGACAGAA+AGG | + | chr3_4:3716300-3716319 | None:intergenic | 55.0% | |
| CCGCTCTATTCGAAACCGAC+GGG | + | chr3_4:3716309-3716328 | None:intergenic | 55.0% | |
| !! | CCCGTCGGTTTCGAATAGAG+CGG | - | chr3_4:3716306-3716325 | Msa0485910:intron | 55.0% |
| CGGTTACGTACCGTATCGAG+TGG | - | chr3_4:3716326-3716345 | Msa0485910:intron | 55.0% | |
| ! | GTTTTATCCTGGAGACGGCG+TGG | - | chr3_4:3716439-3716458 | Msa0485910:intron | 55.0% |
| TTACTGGGTGAGTCACGACC+AGG | + | chr3_4:3716523-3716542 | None:intergenic | 55.0% | |
| GATGGTGCAACCATCAGAGG+AGG | - | chr3_4:3717095-3717114 | Msa0485910:exon | 55.0% | |
| TGTCGTGCAACCTCCTCTGA+TGG | + | chr3_4:3717108-3717127 | None:intergenic | 55.0% | |
| AGAGGAGGTTGCACGACAGA+GGG | - | chr3_4:3717110-3717129 | Msa0485910:intron | 55.0% | |
| CGTCGCAGTCAATCTCCACT+CGG | + | chr3_4:3717311-3717330 | None:intergenic | 55.0% | |
| CGAGTGGAGATTGACTGCGA+CGG | - | chr3_4:3717309-3717328 | Msa0485910:intron | 55.0% | |
| GAGATTGACTGCGACGGTCA+AGG | - | chr3_4:3717315-3717334 | Msa0485910:intron | 55.0% | |
| GATTGACTGCGACGGTCAAG+GGG | - | chr3_4:3717317-3717336 | Msa0485910:intron | 55.0% | |
| GTATCCCCTCCTAGTGTTGC+AGG | - | chr3_4:3717455-3717474 | Msa0485910:intron | 55.0% | |
| GGTATCTCGCAGCAGAGATG+AGG | + | chr3_4:3718400-3718419 | None:intergenic | 55.0% | |
| TCTGCTGCGAGATACCTCAC+CGG | - | chr3_4:3718404-3718423 | Msa0485910:intron | 55.0% | |
| AGAGAGATGGTGTTCCGGTG+AGG | + | chr3_4:3718421-3718440 | None:intergenic | 55.0% | |
| GGAGGAGTCTCACTAGGTGT+TGG | - | chr3_4:3718715-3718734 | Msa0485910:intron | 55.0% | |
| AAGATTCCACAACAGCCCCC+TGG | - | chr3_4:3718915-3718934 | Msa0485910:intron | 55.0% | |
| CCGAAGTAACCCGATGGAAG+TGG | + | chr3_4:3719158-3719177 | None:intergenic | 55.0% | |
| GCCCCAGGTCCCATGAAAAT+TGG | + | chr3_4:3719437-3719456 | None:intergenic | 55.0% | |
| AGTCCATCACAATCAGCCCC+AGG | + | chr3_4:3719452-3719471 | None:intergenic | 55.0% | |
| TGATCGATGGGGAGGAGCAG+AGG | + | chr3_4:3714630-3714649 | None:intergenic | 60.0% | |
| TAAGGGTGGGGTGACCTCCA+AGG | - | chr3_4:3715810-3715829 | Msa0485910:intron | 60.0% | |
| AAGGGTGGGGTGACCTCCAA+GGG | - | chr3_4:3715811-3715830 | Msa0485910:intron | 60.0% | |
| ! | ACCTCCAAGGGTGTGCCCTT+GGG | - | chr3_4:3715823-3715842 | Msa0485910:intron | 60.0% |
| CTAACAACCACGCCGTCTCC+AGG | + | chr3_4:3716449-3716468 | None:intergenic | 60.0% | |
| CAGAGGAGGTTGCACGACAG+AGG | - | chr3_4:3717109-3717128 | Msa0485910:intron | 60.0% | |
| AGGTTGCACGACAGAGGGTG+TGG | - | chr3_4:3717115-3717134 | Msa0485910:intron | 60.0% | |
| ACGCTGGGCGTGTGCACATT+TGG | + | chr3_4:3717165-3717184 | None:intergenic | 60.0% | |
| GGACCTGGGGCTGATTGTGA+TGG | - | chr3_4:3719446-3719465 | Msa0485910:intron | 60.0% | |
| ! | GACCTCCAAGGGTGTGCCCT+TGG | - | chr3_4:3715822-3715841 | Msa0485910:intron | 65.0% |
| ! | CCTCCAAGGGTGTGCCCTTG+GGG | - | chr3_4:3715824-3715843 | Msa0485910:intron | 65.0% |
| ! | GTACCCCAAGGGCACACCCT+TGG | + | chr3_4:3715830-3715849 | None:intergenic | 65.0% |
| TCTGAGCCAGGGGGCTGTTG+TGG | + | chr3_4:3718924-3718943 | None:intergenic | 65.0% | |
| ! | CCCCAAGGGCACACCCTTGG+AGG | + | chr3_4:3715827-3715846 | None:intergenic | 70.0% |
| ATCACGCGCGACGACGACGC+CGG | - | chr3_4:3715889-3715908 | Msa0485910:intron | 70.0% | |
| TCCAAGACCCAAGCCCGGCC+CGG | + | chr3_4:3715915-3715934 | None:intergenic | 70.0% | |
| ! | AGACCCAAGCCCGGCCCGGC+CGG | + | chr3_4:3715911-3715930 | None:intergenic | 80.0% |
| ! | GCCGGGCCGGGCTTGGGTCT+TGG | - | chr3_4:3715911-3715930 | Msa0485910:intron | 80.0% |
| ! | CGCGCGACGACGACGCCGGC+CGG | - | chr3_4:3715893-3715912 | Msa0485910:intron | 85.0% |
| ! | GCGCGACGACGACGCCGGCC+GGG | - | chr3_4:3715894-3715913 | Msa0485910:intron | 85.0% |
| ! | GACGACGACGCCGGCCGGGC+CGG | - | chr3_4:3715898-3715917 | Msa0485910:intron | 85.0% |
| ! | ACGACGACGCCGGCCGGGCC+GGG | - | chr3_4:3715899-3715918 | Msa0485910:intron | 85.0% |
| ! | ACGCCGGCCGGGCCGGGCTT+GGG | - | chr3_4:3715905-3715924 | Msa0485910:intron | 85.0% |
| ! | GACGCCGGCCGGGCCGGGCT+TGG | - | chr3_4:3715904-3715923 | Msa0485910:intron | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 3714588 | 3719577 | 3714588 | ID=Msa0485910;Name=Msa0485910 |
| chr3_4 | mRNA | 3714588 | 3719577 | 3714588 | ID=Msa0485910-mRNA-1;Parent=Msa0485910;Name=Msa0485910-mRNA-1;_AED=0.30;_eAED=0.30;_QI=105|0.66|0.5|1|0.66|0.5|4|0|389 |
| chr3_4 | exon | 3714588 | 3715247 | 3714588 | ID=Msa0485910-mRNA-1:exon:1410;Parent=Msa0485910-mRNA-1 |
| chr3_4 | exon | 3715367 | 3715468 | 3715367 | ID=Msa0485910-mRNA-1:exon:1409;Parent=Msa0485910-mRNA-1 |
| chr3_4 | exon | 3716689 | 3717116 | 3716689 | ID=Msa0485910-mRNA-1:exon:1408;Parent=Msa0485910-mRNA-1 |
| chr3_4 | exon | 3719493 | 3719577 | 3719493 | ID=Msa0485910-mRNA-1:exon:1407;Parent=Msa0485910-mRNA-1 |
| chr3_4 | five_prime_UTR | 3719493 | 3719577 | 3719493 | ID=Msa0485910-mRNA-1:five_prime_utr;Parent=Msa0485910-mRNA-1 |
| chr3_4 | five_prime_UTR | 3717097 | 3717116 | 3717097 | ID=Msa0485910-mRNA-1:five_prime_utr;Parent=Msa0485910-mRNA-1 |
| chr3_4 | CDS | 3716689 | 3717096 | 3716689 | ID=Msa0485910-mRNA-1:cds;Parent=Msa0485910-mRNA-1 |
| chr3_4 | CDS | 3715367 | 3715468 | 3715367 | ID=Msa0485910-mRNA-1:cds;Parent=Msa0485910-mRNA-1 |
| chr3_4 | CDS | 3714588 | 3715247 | 3714588 | ID=Msa0485910-mRNA-1:cds;Parent=Msa0485910-mRNA-1 |
| Gene Sequence |
| Protein sequence |