AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1201710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1201710 MtrunA17_Chr8g0371821 90.443 429 41 0 1 429 1 429 0.0 808
Msa1201710 MtrunA17_Chr4g0001861 74.827 433 105 3 1 429 1 433 0.0 683
Msa1201710 MtrunA17_Chr2g0334001 70.370 432 125 3 1 429 1 432 0.0 634
Msa1201710 MtrunA17_Chr2g0311401 71.096 301 84 3 132 429 2 302 2.87e-157 446
Msa1201710 MtrunA17_Chr4g0072041 36.889 450 253 9 3 427 14 457 2.02e-95 294
Msa1201710 MtrunA17_Chr4g0054081 36.807 451 237 11 11 427 17 453 3.29e-89 278
Msa1201710 MtrunA17_Chr3g0132001 36.256 422 252 7 11 426 22 432 4.51e-89 277
Msa1201710 MtrunA17_Chr3g0087401 32.969 458 265 13 2 427 1 448 1.67e-84 266
Msa1201710 MtrunA17_Chr7g0253501 35.637 463 254 15 2 428 1 455 3.46e-83 263
Msa1201710 MtrunA17_Chr8g0386141 33.949 433 264 8 3 426 7 426 3.33e-81 257
Msa1201710 MtrunA17_Chr7g0253531 35.421 463 255 15 2 428 1 455 1.16e-80 256
Msa1201710 MtrunA17_Chr7g0224391 34.028 432 268 8 3 426 13 435 9.26e-76 243
Msa1201710 MtrunA17_Chr7g0253541 33.548 465 257 17 3 428 4 455 4.68e-69 226
Msa1201710 MtrunA17_Chr2g0311411 66.197 142 48 0 1 142 1 142 1.90e-61 196
Msa1201710 MtrunA17_Chr2g0306321 31.525 387 233 12 22 388 40 414 3.77e-57 194
Msa1201710 MtrunA17_Chr7g0235531 27.664 441 297 7 3 428 4 437 4.67e-54 186
Msa1201710 MtrunA17_Chr7g0252731 30.788 406 226 13 1 388 15 383 4.04e-52 181
Msa1201710 MtrunA17_Chr1g0165671 30.926 443 275 16 1 425 23 452 2.89e-50 177
Msa1201710 MtrunA17_Chr1g0191081 27.765 443 297 13 1 429 14 447 5.60e-50 175
Msa1201710 MtrunA17_Chr4g0004701 39.545 220 120 5 222 428 21 240 2.48e-49 167
Msa1201710 MtrunA17_Chr1g0165661 29.263 434 261 12 3 412 9 420 6.55e-48 170
Msa1201710 MtrunA17_Chr7g0273761 28.345 441 290 14 1 424 378 809 1.08e-47 174
Msa1201710 MtrunA17_Chr7g0273761 29.180 305 185 11 136 424 32 321 9.56e-26 110
Msa1201710 MtrunA17_Chr5g0433641 28.315 445 287 15 1 425 6 438 1.02e-46 167
Msa1201710 MtrunA17_Chr1g0165681 28.606 416 277 10 8 412 14 420 5.97e-46 165
Msa1201710 MtrunA17_Chr7g0273781 28.637 433 282 13 9 425 49 470 9.48e-45 162
Msa1201710 MtrunA17_Chr7g0273721 26.846 447 292 12 1 425 7 440 1.27e-44 161
Msa1201710 MtrunA17_Chr7g0273731 29.083 447 280 15 1 425 89 520 4.07e-44 161
Msa1201710 MtrunA17_Chr7g0273791 27.640 445 289 15 1 425 6 437 5.85e-43 157
Msa1201710 MtrunA17_Chr3g0113821 26.368 402 269 10 3 388 5 395 2.15e-40 149
Msa1201710 MtrunA17_Chr5g0442701 26.106 452 296 14 3 423 10 454 7.90e-39 145
Msa1201710 MtrunA17_Chr1g0165711 28.899 436 233 15 9 425 15 392 8.63e-39 144
Msa1201710 MtrunA17_Chr4g0027071 26.696 457 282 17 3 424 12 450 1.82e-38 144
Msa1201710 MtrunA17_Chr3g0134041 27.206 408 266 13 26 414 34 429 2.19e-38 144
Msa1201710 MtrunA17_Chr6g0467861 24.948 477 292 16 3 429 47 507 1.66e-37 142
Msa1201710 MtrunA17_Chr3g0141851 27.714 433 270 18 11 423 20 429 2.22e-37 141
Msa1201710 MtrunA17_Chr8g0371851 68.367 98 28 2 1 95 28 125 2.47e-37 133
Msa1201710 MtrunA17_Chr5g0442691 25.000 452 301 13 3 423 33 477 6.90e-37 140
Msa1201710 MtrunA17_Chr3g0123061 27.603 413 251 13 24 423 28 405 9.23e-37 139
Msa1201710 MtrunA17_Chr2g0283361 26.411 443 295 15 2 424 1 432 8.66e-36 137
Msa1201710 MtrunA17_Chr3g0113181 27.250 400 246 14 56 419 66 456 2.35e-33 130
Msa1201710 MtrunA17_Chr3g0134071 27.701 361 218 10 54 389 68 410 2.65e-33 130
Msa1201710 MtrunA17_Chr3g0134091 27.595 395 229 11 56 419 68 436 9.41e-33 128
Msa1201710 MtrunA17_Chr3g0097841 31.532 222 140 5 219 428 21 242 1.14e-32 124
Msa1201710 MtrunA17_Chr4g0053111 25.510 392 254 10 56 429 62 433 5.22e-32 126
Msa1201710 MtrunA17_Chr8g0359251 28.000 400 246 15 43 423 56 432 1.99e-31 124
Msa1201710 MtrunA17_Chr5g0442721 25.000 456 290 14 3 419 10 452 3.03e-31 124
Msa1201710 MtrunA17_Chr3g0134061 26.376 436 270 15 16 414 20 441 3.10e-31 124
Msa1201710 MtrunA17_Chr4g0010331 28.278 389 234 15 56 420 55 422 5.18e-31 123
Msa1201710 MtrunA17_Chr8g0354371 28.084 381 244 15 56 421 64 429 1.09e-30 122
Msa1201710 MtrunA17_Chr3g0106691 28.804 368 229 13 3 348 56 412 2.08e-30 122
Msa1201710 MtrunA17_Chr3g0134111 26.478 389 253 12 56 423 65 441 2.90e-30 121
Msa1201710 MtrunA17_Chr3g0134121 26.500 400 235 13 56 423 69 441 3.00e-30 122
Msa1201710 MtrunA17_Chr3g0095731 26.128 421 262 15 39 423 46 453 4.66e-30 121
Msa1201710 MtrunA17_Chr4g0053081 24.359 390 254 14 56 422 64 435 9.11e-30 120
Msa1201710 MtrunA17_Chr4g0053091 25.381 394 234 15 56 429 67 420 1.37e-29 119
Msa1201710 MtrunA17_Chr4g0010361 27.273 385 250 10 56 420 55 429 1.40e-29 119
Msa1201710 MtrunA17_Chr4g0001801 71.212 66 19 0 151 216 1 66 2.03e-29 109
Msa1201710 MtrunA17_Chr4g0010311 26.098 387 251 12 56 420 55 428 2.67e-29 119
Msa1201710 MtrunA17_Chr4g0004691 31.892 185 116 4 5 184 6 185 4.23e-29 112
Msa1201710 MtrunA17_Chr3g0095721 26.014 419 256 15 51 428 65 470 5.89e-29 118
Msa1201710 MtrunA17_Chr4g0010381 27.411 394 238 17 56 421 55 428 6.04e-29 117
Msa1201710 MtrunA17_Chr3g0087221 27.778 396 242 17 56 421 55 436 7.10e-29 117
Msa1201710 MtrunA17_Chr5g0436621 22.595 447 238 11 55 423 60 476 7.40e-29 118
Msa1201710 MtrunA17_Chr3g0125001 26.753 385 245 16 56 421 55 421 1.87e-28 116
Msa1201710 MtrunA17_Chr6g0470591 30.205 341 204 16 11 327 19 349 4.27e-28 115
Msa1201710 MtrunA17_Chr4g0005941 25.349 430 239 10 56 419 60 473 1.76e-27 114
Msa1201710 MtrunA17_Chr7g0224131 27.249 389 245 11 56 422 55 427 3.75e-27 112
Msa1201710 MtrunA17_Chr4g0053061 26.076 395 250 14 56 422 87 467 4.88e-27 112
Msa1201710 MtrunA17_Chr6g0455341 26.202 416 268 17 39 425 50 455 9.96e-27 111
Msa1201710 MtrunA17_Chr8g0376901 25.116 430 263 19 23 426 28 424 1.46e-26 110
Msa1201710 MtrunA17_Chr7g0252771 28.736 261 157 7 181 427 7 252 1.57e-26 107
Msa1201710 MtrunA17_Chr3g0134101 26.425 386 237 11 56 423 86 442 3.90e-26 109
Msa1201710 MtrunA17_Chr4g0001811 68.493 73 17 2 358 429 15 82 5.74e-26 100
Msa1201710 MtrunA17_Chr8g0374641 26.343 391 245 15 56 420 59 432 5.80e-26 109
Msa1201710 MtrunA17_Chr5g0438701 22.613 398 280 13 35 423 37 415 9.01e-26 108
Msa1201710 MtrunA17_Chr8g0374911 25.840 387 261 13 56 422 80 460 9.50e-26 108
Msa1201710 MtrunA17_Chr3g0106721 27.824 363 238 12 3 346 10 367 1.01e-25 108
Msa1201710 MtrunA17_Chr3g0106661 26.782 463 285 18 3 424 10 459 1.24e-25 108
Msa1201710 MtrunA17_Chr5g0408911 26.596 376 247 15 24 385 41 401 1.71e-25 108
Msa1201710 MtrunA17_Chr7g0270771 29.352 293 163 11 1 277 1 265 1.97e-25 104
Msa1201710 MtrunA17_Chr5g0438681 22.871 411 284 12 24 423 26 414 4.25e-25 106
Msa1201710 MtrunA17_Chr7g0219241 24.368 435 276 16 32 428 52 471 5.11e-25 107
Msa1201710 MtrunA17_Chr6g0455361 25.476 420 263 18 39 425 50 452 4.04e-24 103
Msa1201710 MtrunA17_Chr8g0376911 23.571 420 282 11 24 426 26 423 5.64e-24 103
Msa1201710 MtrunA17_Chr3g0106761 26.667 315 207 10 45 347 9 311 2.28e-23 101
Msa1201710 MtrunA17_Chr4g0010121 26.593 361 217 15 56 389 99 438 3.02e-23 101
Msa1201710 MtrunA17_Chr4g0010351 28.205 273 181 8 56 315 55 325 3.94e-23 100
Msa1201710 MtrunA17_Chr4g0001791 71.875 64 18 0 70 133 1 64 1.25e-22 91.3
Msa1201710 MtrunA17_Chr4g0001781 68.852 61 19 0 1 61 1 61 1.28e-22 90.5
Msa1201710 MtrunA17_Chr7g0219331 24.466 421 261 16 2 383 102 504 2.43e-22 99.4
Msa1201710 MtrunA17_Chr8g0376891 21.481 405 290 12 34 426 36 424 5.20e-22 97.8
Msa1201710 MtrunA17_Chr6g0454761 23.571 420 274 18 39 425 532 937 6.51e-22 99.0
Msa1201710 MtrunA17_Chr6g0454761 22.642 424 272 16 39 425 45 449 2.55e-19 90.9
Msa1201710 MtrunA17_Chr7g0219291 22.633 433 281 15 32 428 399 813 1.12e-21 97.8
Msa1201710 MtrunA17_Chr1g0199561 24.574 411 259 15 35 416 37 425 1.54e-21 96.3
Msa1201710 MtrunA17_Chr7g0274021 26.087 322 222 10 35 348 40 353 2.87e-21 95.9
Msa1201710 MtrunA17_Chr3g0106741 27.551 294 189 11 70 348 59 343 7.33e-21 94.4
Msa1201710 MtrunA17_Chr8g0361771 23.317 416 263 18 1 387 1 389 8.58e-21 94.4
Msa1201710 MtrunA17_Chr2g0302471 29.139 151 98 2 2 151 3 145 1.74e-20 87.4
Msa1201710 MtrunA17_Chr7g0219301 23.176 466 295 15 2 425 9 453 2.10e-20 94.0
Msa1201710 MtrunA17_Chr3g0124341 25.485 412 256 15 56 426 67 468 5.01e-20 92.0
Msa1201710 MtrunA17_Chr8g0361781 24.455 413 256 20 4 387 4 389 5.04e-20 92.0
Msa1201710 MtrunA17_Chr7g0219121 22.362 398 245 14 32 383 50 429 2.29e-19 90.1
Msa1201710 MtrunA17_Chr2g0323501 23.284 408 267 14 56 426 73 471 2.29e-18 87.0
Msa1201710 MtrunA17_Chr7g0219181 22.479 476 309 16 3 428 8 473 4.10e-18 86.3
Msa1201710 MtrunA17_Chr6g0455351 26.154 325 205 11 39 333 50 369 4.48e-18 85.9
Msa1201710 MtrunA17_Chr2g0323481 22.326 430 288 11 34 426 37 457 7.61e-18 85.5
Msa1201710 MtrunA17_Chr3g0087901 23.394 436 256 20 39 422 47 456 7.67e-18 85.5
Msa1201710 MtrunA17_Chr7g0253521 31.538 130 76 4 311 428 16 144 8.26e-18 80.1
Msa1201710 MtrunA17_Chr7g0273741 34.586 133 83 3 9 137 16 148 4.31e-17 78.2
Msa1201710 MtrunA17_Chr3g0083761 24.725 364 230 15 55 385 63 415 9.46e-17 82.0
Msa1201710 MtrunA17_Chr6g0471371 35.556 135 83 3 7 137 13 147 5.59e-16 75.5
Msa1201710 MtrunA17_Chr6g0471971 25.410 244 142 9 151 387 1 211 3.39e-15 74.7
Msa1201710 MtrunA17_Chr3g0106711 31.282 195 121 7 3 185 10 203 3.71e-15 74.7
Msa1201710 MtrunA17_Chr1g0148851 21.789 436 306 12 5 423 13 430 1.18e-14 75.5
Msa1201710 MtrunA17_Chr7g0219881 20.312 448 293 17 24 426 28 456 2.10e-14 74.7
Msa1201710 MtrunA17_Chr3g0097851 32.222 90 61 0 249 338 25 114 2.35e-14 69.3
Msa1201710 MtrunA17_Chr1g0165741 32.374 139 90 3 3 137 9 147 3.11e-14 69.7
Msa1201710 MtrunA17_Chr6g0471381 25.630 238 150 6 187 412 7 229 9.36e-14 71.2
Msa1201710 MtrunA17_Chr8g0353901 25.366 205 147 4 222 422 19 221 7.32e-13 68.2
Msa1201710 MtrunA17_Chr7g0219211 25.000 240 128 9 32 237 52 273 2.65e-12 67.8
Msa1201710 MtrunA17_Chr3g0098961 33.663 101 65 2 9 107 19 119 3.20e-12 65.1
Msa1201710 MtrunA17_Chr3g0097831 35.366 82 52 1 2 82 1 82 1.21e-11 60.5
Msa1201710 MtrunA17_Chr8g0353421 34.343 99 63 2 11 107 17 115 3.11e-11 60.8
Msa1201710 MtrunA17_Chr2g0323511 23.035 369 236 12 55 383 74 434 5.22e-11 64.3
Msa1201710 MtrunA17_Chr8g0378151 26.994 163 118 1 25 187 35 196 6.31e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1201710 AT5G48930.1 66.282 433 142 3 1 429 1 433 0.0 606
Msa1201710 AT5G57840.1 37.387 444 256 7 1 429 1 437 5.98e-104 316
Msa1201710 AT2G19070.1 38.444 450 249 9 3 428 4 449 1.01e-97 300
Msa1201710 AT3G48720.1 33.333 429 274 5 2 426 8 428 3.23e-83 262
Msa1201710 AT5G63560.1 32.947 431 271 5 1 426 7 424 5.41e-82 259
Msa1201710 AT5G41040.2 33.409 440 265 9 3 429 17 441 2.14e-79 252
Msa1201710 AT5G41040.1 33.409 440 265 9 3 429 33 457 2.98e-79 253
Msa1201710 AT1G65450.1 30.713 407 246 13 1 388 16 405 5.01e-53 184
Msa1201710 AT1G27620.1 33.333 387 222 14 56 427 58 423 6.16e-52 181
Msa1201710 AT1G03390.1 28.571 441 271 14 13 426 32 455 1.55e-51 180
Msa1201710 AT5G17540.1 28.837 430 282 10 9 424 15 434 7.87e-48 170
Msa1201710 AT3G03480.1 29.817 436 277 13 3 422 19 441 1.17e-45 164
Msa1201710 AT2G40230.1 26.018 442 293 13 2 426 4 428 3.46e-42 154
Msa1201710 AT1G28680.1 27.753 454 277 17 3 424 4 438 2.95e-41 152
Msa1201710 AT1G78990.1 28.676 408 262 13 33 424 45 439 1.48e-38 145
Msa1201710 AT5G16410.1 27.820 399 257 14 24 406 61 444 8.32e-37 140
Msa1201710 AT1G28680.2 29.282 362 229 13 3 347 4 355 9.37e-37 139
Msa1201710 AT5G23940.1 28.093 388 243 13 56 420 65 439 3.08e-36 139
Msa1201710 AT1G32910.1 28.125 384 243 14 53 415 62 433 1.43e-35 137
Msa1201710 AT5G07860.1 27.806 392 235 12 56 423 72 439 3.87e-35 135
Msa1201710 AT1G24430.1 28.087 413 258 19 24 423 29 415 1.09e-32 128
Msa1201710 AT5G07870.1 25.954 393 253 12 56 423 72 451 6.50e-32 127
Msa1201710 AT5G07080.1 27.212 452 281 18 1 424 12 443 3.56e-31 124
Msa1201710 AT5G42830.1 25.700 393 250 11 56 423 64 439 1.44e-30 122
Msa1201710 AT5G67150.1 28.354 395 231 19 56 420 61 433 1.66e-30 122
Msa1201710 AT3G50280.1 26.020 392 250 13 56 429 59 428 2.50e-30 122
Msa1201710 AT3G50270.1 27.416 445 278 20 8 429 11 433 4.27e-30 121
Msa1201710 AT1G31490.1 28.747 407 249 18 24 410 29 414 4.47e-30 121
Msa1201710 AT5G67160.1 27.247 356 222 10 52 389 52 388 4.80e-30 121
Msa1201710 AT5G01210.1 27.390 387 243 10 67 419 73 455 1.46e-29 120
Msa1201710 AT2G39980.1 24.885 434 227 13 56 419 62 466 1.78e-29 120
Msa1201710 AT5G47950.1 25.728 412 265 14 24 424 29 410 5.41e-29 118
Msa1201710 AT5G07850.1 26.343 391 248 14 56 423 70 443 1.72e-28 117
Msa1201710 AT3G47170.1 29.589 365 206 16 10 341 19 365 1.90e-28 117
Msa1201710 AT4G15390.1 24.449 454 284 19 1 424 6 430 2.96e-28 116
Msa1201710 AT4G15390.2 24.449 454 284 19 1 424 6 430 2.96e-28 116
Msa1201710 AT1G65450.3 30.315 254 152 7 147 388 1 241 3.22e-28 113
Msa1201710 AT3G50300.1 25.814 430 284 16 3 410 4 420 3.50e-28 116
Msa1201710 AT3G30280.1 24.385 447 282 16 1 419 4 422 4.79e-28 115
Msa1201710 AT3G26040.1 25.000 444 289 15 1 424 1 420 5.48e-28 115
Msa1201710 AT4G31910.1 27.960 397 236 18 19 381 27 407 2.07e-27 114
Msa1201710 AT1G24420.2 26.075 372 232 13 67 423 76 419 8.45e-27 112
Msa1201710 AT1G24420.1 26.075 372 232 13 67 423 76 419 8.45e-27 112
Msa1201710 AT5G23970.1 24.201 438 290 15 1 423 1 411 2.14e-26 110
Msa1201710 AT5G38130.1 25.635 433 289 16 3 415 24 443 2.47e-26 110
Msa1201710 AT3G62160.1 25.490 408 233 16 53 428 52 420 3.24e-26 110
Msa1201710 AT3G50280.2 26.129 310 194 10 131 429 13 298 6.68e-26 107
Msa1201710 AT2G23510.1 25.778 450 279 17 8 424 18 445 3.39e-25 107
Msa1201710 AT5G47980.1 24.229 454 277 18 3 422 5 425 7.51e-25 106
Msa1201710 AT3G29670.1 25.000 376 234 15 39 384 45 402 2.90e-23 102
Msa1201710 AT5G39080.1 24.601 439 257 21 39 427 44 458 3.97e-23 101
Msa1201710 AT5G61160.1 23.866 419 283 15 36 427 38 447 8.73e-23 100
Msa1201710 AT5G39090.1 24.213 413 277 14 39 427 44 444 1.00e-22 100
Msa1201710 AT4G15400.1 25.282 443 278 17 3 422 5 417 1.14e-22 100
Msa1201710 AT2G25150.1 23.094 446 310 15 1 423 11 446 1.99e-22 99.8
Msa1201710 AT3G29635.1 23.711 388 250 14 28 383 33 406 6.76e-22 97.8
Msa1201710 AT3G50290.1 27.143 280 181 8 114 381 1 269 1.17e-21 94.7
Msa1201710 AT5G39050.1 24.855 346 223 10 110 427 128 464 8.89e-21 94.7
Msa1201710 AT3G29680.1 24.939 413 273 15 39 425 41 442 9.83e-21 94.4
Msa1201710 AT1G03940.1 26.464 427 260 18 40 426 48 460 3.90e-20 92.8
Msa1201710 AT3G29590.1 23.487 413 277 14 39 425 44 443 2.84e-18 87.0
Msa1201710 AT1G03495.1 27.397 292 176 12 40 300 48 334 4.14e-16 79.7

Find 121 sgRNAs with CRISPR-Local

Find 400 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATCTATGATGCTGATTT+TGG 0.174848 8_1:-54899814 Msa1201710:CDS
AATCTTGGCGTCGAAGAATT+TGG 0.180314 8_1:+54902006 None:intergenic
GACTCATTCATAGATGATTT+TGG 0.200306 8_1:-54901854 Msa1201710:CDS
ATCTGTTGGGATATACAATT+TGG 0.202242 8_1:+54900104 None:intergenic
TGAGCACATGGAAGTGTTTA+AGG 0.217722 8_1:-54899680 Msa1201710:CDS
ACAAAATTATTGAGGTTTAT+AGG 0.234282 8_1:-54899633 Msa1201710:three_prime_UTR
GATTGTGTTGCCAACTTCTT+TGG 0.243766 8_1:+54900209 None:intergenic
CTCACAATAAACCAAGTTTC+AGG 0.274836 8_1:-54899317 Msa1201710:three_prime_UTR
TGGCGTCTTCAAATCAATAT+TGG 0.296957 8_1:+54902075 None:intergenic
GTTGATTACTCGCACGGAAT+TGG 0.305256 8_1:-54901788 Msa1201710:CDS
GCCCCAGGTCCCATGAAAAT+TGG 0.308839 8_1:+54899781 None:intergenic
TATCTAGCGGATGGAGCTTC+TGG 0.323110 8_1:-54900468 Msa1201710:CDS
CATGGAAGTGTTTAAGGAAT+TGG 0.330065 8_1:-54899674 Msa1201710:CDS
CTCCCATCATTTGTTGAGCT+TGG 0.337911 8_1:+54899730 None:intergenic
AACCTTGATCTTCCATCTGT+TGG 0.339884 8_1:+54900090 None:intergenic
ACGCTGGGCGTGTGCACATT+TGG 0.345761 8_1:+54902055 None:intergenic
GTATCCCCTCCTAGTGTTGC+AGG 0.361289 8_1:-54901762 Msa1201710:intron
CAACTAACGATCGCAAGATT+TGG 0.361643 8_1:+54899847 None:intergenic
TACCTCGATTTATTGTCATT+TGG 0.363029 8_1:-54899431 Msa1201710:three_prime_UTR
TTATAGGAGGAATTCTAATA+TGG 0.365749 8_1:-54899617 Msa1201710:three_prime_UTR
AGTAGTGTCCGATCAATAAA+TGG 0.376919 8_1:+54900387 None:intergenic
GAGAGCTTTCTTCATAATCT+TGG 0.393839 8_1:+54901991 None:intergenic
GGGCTGTTGTGGAATCTTCA+TGG 0.396336 8_1:+54900305 None:intergenic
GTCACAATGACCAAATCAAT+AGG 0.399719 8_1:+54899464 None:intergenic
AGATCACTTGCTAGAGCTAT+AGG 0.414190 8_1:+54900015 None:intergenic
CTTGTTACATTCTCTGAGCC+AGG 0.415957 8_1:+54900282 None:intergenic
AGATGTTAGCTGGTCATGTT+TGG 0.416361 8_1:-54900170 Msa1201710:CDS
AAGCTCCATCCGCTAGATAA+TGG 0.417712 8_1:+54900472 None:intergenic
CAAATCTTGCGATCGTTAGT+TGG 0.432391 8_1:-54899846 Msa1201710:CDS
CAATTTGGTTTCTTGATCAT+CGG 0.436135 8_1:+54900119 None:intergenic
ATTCCAAGCTCAACAAATGA+TGG 0.437823 8_1:-54899733 Msa1201710:CDS
ACCTTGATCTTCCATCTGTT+GGG 0.438044 8_1:+54900091 None:intergenic
CCAAAATCAGCATCATAGAT+TGG 0.443349 8_1:+54899814 None:intergenic
AATTTGGTTTCTTGATCATC+GGG 0.446925 8_1:+54900120 None:intergenic
TTGAAGAAACAAAATTATTG+AGG 0.452836 8_1:-54899641 Msa1201710:exon
AAATCTTGCGATCGTTAGTT+GGG 0.456385 8_1:-54899845 Msa1201710:CDS
ATGACCAAATCAATAGGGTT+TGG 0.461640 8_1:+54899470 None:intergenic
AAATGATGGGAGTTTATCTC+TGG 0.468887 8_1:-54899719 Msa1201710:CDS
GTGTCCAAACCCTATTGATT+TGG 0.470236 8_1:-54899474 Msa1201710:three_prime_UTR
GGACCTGGGGCTGATTGTGA+TGG 0.472141 8_1:-54899769 Msa1201710:CDS
GGCGTCGAAGAATTTGGAAA+TGG 0.476256 8_1:+54902012 None:intergenic
GAAGAATTTGGAAATGGTGT+TGG 0.485713 8_1:+54902018 None:intergenic
TCACAATGACCAAATCAATA+GGG 0.488414 8_1:+54899465 None:intergenic
CCATCCCACCATTTATTGAT+CGG 0.494066 8_1:-54900395 Msa1201710:CDS
GAGGAGTCTCACTAGGTGTT+GGG 0.500601 8_1:-54900500 Msa1201710:CDS
CACAATAAACCAAGTTTCAG+GGG 0.505363 8_1:-54899315 Msa1201710:three_prime_UTR
TCCAAATGTTTGAACTCTTG+TGG 0.509604 8_1:+54899239 None:intergenic
AGATTGACTGCGACGGTCAA+GGG 0.512197 8_1:-54901901 Msa1201710:CDS
GACTTGAGAAGATGATCGAT+GGG 0.512591 8_1:+54904882 None:intergenic
GTCTCATTCTATCCAATGGC+AGG 0.512688 8_1:-54901956 Msa1201710:CDS
GTTGCAACCTCCACTTCCAT+CGG 0.513383 8_1:-54900070 Msa1201710:CDS
ACCACTTATGAGATGTTAGC+TGG 0.515378 8_1:-54900180 Msa1201710:CDS
AATGGGTTGTGGTGGATCAC+GGG 0.517116 8_1:+54900359 None:intergenic
CCGAAGTAACCCGATGGAAG+TGG 0.519068 8_1:+54900060 None:intergenic
TTGTTACATTCTCTGAGCCA+GGG 0.519910 8_1:+54900283 None:intergenic
CCCATTGTTGATTACTCGCA+CGG 0.520681 8_1:-54901794 Msa1201710:CDS
TCACAATAAACCAAGTTTCA+GGG 0.521373 8_1:-54899316 Msa1201710:three_prime_UTR
AAATGGGTTGTGGTGGATCA+CGG 0.523511 8_1:+54900358 None:intergenic
TTGCAACCTCCACTTCCATC+GGG 0.527792 8_1:-54900069 Msa1201710:CDS
AGGTTGCACGACAGAGGGTG+TGG 0.528209 8_1:-54902102 Msa1201710:CDS
ACCAGCTAACATCTCATAAG+TGG 0.532159 8_1:+54900179 None:intergenic
GGAGGAGTCTCACTAGGTGT+TGG 0.533578 8_1:-54900501 Msa1201710:CDS
GAGATTGACTGCGACGGTCA+AGG 0.536807 8_1:-54901902 Msa1201710:CDS
TGTCGTGCAACCTCCTCTGA+TGG 0.537379 8_1:+54902112 None:intergenic
TCACAATGCATTGTTGCGAA+TGG 0.539746 8_1:-54899956 Msa1201710:CDS
CCGTGCGAGTAATCAACAAT+GGG 0.543465 8_1:+54901794 None:intergenic
CTGCTTACAGCATACCATGT+TGG 0.546067 8_1:+54899982 None:intergenic
TGAAACATACCTGCAACACT+AGG 0.550704 8_1:+54901753 None:intergenic
AAAGCTAAGTCCAAAGAAGT+TGG 0.554521 8_1:-54900219 Msa1201710:CDS
AGACTTGAGAAGATGATCGA+TGG 0.563265 8_1:+54904881 None:intergenic
TTCCAAGCTCAACAAATGAT+GGG 0.564691 8_1:-54899732 Msa1201710:CDS
GCTTGTCTCATTCTATCCAA+TGG 0.577382 8_1:-54901960 Msa1201710:CDS
GACACTTAACATTAGCGTTG+CGG 0.578284 8_1:+54899869 None:intergenic
TGTTACATTCTCTGAGCCAG+GGG 0.579400 8_1:+54900284 None:intergenic
CCACTTCCATCGGGTTACTT+CGG 0.580903 8_1:-54900060 Msa1201710:CDS
TGATCGATGGGGAGGAGCAG+AGG 0.581841 8_1:+54904894 None:intergenic
ATGCACCATTATCTAGCGGA+TGG 0.586149 8_1:-54900477 Msa1201710:CDS
TTCTCTTCAACATGAGCACA+TGG 0.587094 8_1:-54899692 Msa1201710:CDS
AAATGTGGAGGAGTCTCACT+AGG 0.587340 8_1:-54900507 Msa1201710:CDS
TAAGATGGTGCAACCATCAG+AGG 0.588848 8_1:-54902125 Msa1201710:CDS
AACATACCTGCAACACTAGG+AGG 0.589335 8_1:+54901756 None:intergenic
CAGGTAACATACTTCAAATG+TGG 0.592022 8_1:-54900522 Msa1201710:CDS
CTTCTCAAGTCTCAACCTCA+AGG 0.592352 8_1:-54904870 Msa1201710:intron
GTATTCACTTCATCAATACA+TGG 0.592850 8_1:-54900446 Msa1201710:CDS
TGTTGTGGAATCTTCATGGA+TGG 0.592987 8_1:+54900309 None:intergenic
AGTTTGCACAAGTGCAATGT+GGG 0.593249 8_1:+54901821 None:intergenic
CCGATCAATAAATGGTGGGA+TGG 0.595584 8_1:+54900395 None:intergenic
AAATTGTATATCCCAACAGA+TGG 0.596360 8_1:-54900102 Msa1201710:CDS
TAAGTGTTGTGTTGTTGTCG+TGG 0.596711 8_1:+54904935 None:intergenic
TCCCAACAGATGGAAGATCA+AGG 0.597699 8_1:-54900092 Msa1201710:CDS
ACATACCTGCAACACTAGGA+GGG 0.599464 8_1:+54901757 None:intergenic
GGTTCTATAGAAGTAAACGC+TGG 0.599513 8_1:+54902039 None:intergenic
TCCGTGCGAGTAATCAACAA+TGG 0.601479 8_1:+54901793 None:intergenic
AGTGTCCGATCAATAAATGG+TGG 0.602271 8_1:+54900390 None:intergenic
AAATTATTGAGGTTTATAGG+AGG 0.608707 8_1:-54899630 Msa1201710:three_prime_UTR
GATTGACTGCGACGGTCAAG+GGG 0.613982 8_1:-54901900 Msa1201710:CDS
GTGTCCGATCAATAAATGGT+GGG 0.614323 8_1:+54900391 None:intergenic
GTTCTATAGAAGTAAACGCT+GGG 0.614614 8_1:+54902040 None:intergenic
AGAGGAGGTTGCACGACAGA+GGG 0.614646 8_1:-54902107 Msa1201710:CDS
CGTCGCAGTCAATCTCCACT+CGG 0.618119 8_1:+54901909 None:intergenic
AGTCCATCACAATCAGCCCC+AGG 0.618805 8_1:+54899766 None:intergenic
AAATGTGAGAGATTCTAAGA+TGG 0.628367 8_1:-54902140 Msa1201710:CDS
CAGAGGAGGTTGCACGACAG+AGG 0.628673 8_1:-54902108 Msa1201710:CDS
TGAGAAGATGATCGATGGGG+AGG 0.633457 8_1:+54904886 None:intergenic
CATACCTGCAACACTAGGAG+GGG 0.639094 8_1:+54901758 None:intergenic
AAGTAACCCGATGGAAGTGG+AGG 0.642861 8_1:+54900063 None:intergenic
GTAACATACTTCAAATGTGG+AGG 0.650078 8_1:-54900519 Msa1201710:CDS
AAGTTTGCACAAGTGCAATG+TGG 0.654616 8_1:+54901820 None:intergenic
TTCCAAATGACAATAAATCG+AGG 0.658729 8_1:+54899429 None:intergenic
GTTACATTCTCTGAGCCAGG+GGG 0.664833 8_1:+54900285 None:intergenic
GATGGTGCAACCATCAGAGG+AGG 0.670764 8_1:-54902122 Msa1201710:CDS
ATCTCATGTCAAAACCAACA+TGG 0.673675 8_1:-54899996 Msa1201710:CDS
ACAATAAACCAAGTTTCAGG+GGG 0.674724 8_1:-54899314 Msa1201710:three_prime_UTR
ACATTGCCGAAGTAACCCGA+TGG 0.677759 8_1:+54900054 None:intergenic
TATGAAGAAAGCTCTCAGCA+AGG 0.680412 8_1:-54901984 Msa1201710:CDS
TTACGACAAAGAGGACCGAG+TGG 0.693636 8_1:-54901924 Msa1201710:CDS
TGGGATGCACCATTATCTAG+CGG 0.698386 8_1:-54900481 Msa1201710:CDS
ACATGGTCAGATGTAACTCG+CGG 0.711726 8_1:-54900429 Msa1201710:CDS
ACTTGAGAAGATGATCGATG+GGG 0.732649 8_1:+54904883 None:intergenic
ACTTGCTAGAGCTATAGGTG+CGG 0.736048 8_1:+54900020 None:intergenic
CGAGTGGAGATTGACTGCGA+CGG 0.747066 8_1:-54901908 Msa1201710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTATATATAAATAT+TGG + chr8_1:54899413-54899432 None:intergenic 0.0%
!! TTTATATATAAATATTGGAA+TGG + chr8_1:54899408-54899427 None:intergenic 10.0%
!!! ATATAAATAAAATGTAGTTT+TGG - chr8_1:54899421-54899440 Msa1201710:three_prime_UTR 10.0%
!!! TTTTTTAAAATCAAAACTTT+TGG - chr8_1:54899482-54899501 Msa1201710:three_prime_UTR 10.0%
!! ACAAATTATTCAAATTAAAA+AGG + chr8_1:54900095-54900114 None:intergenic 10.0%
!! AAATTATCCTTATTAATTAT+TGG + chr8_1:54900786-54900805 None:intergenic 10.0%
!! AATAATTAATAAGGATAATT+TGG - chr8_1:54900785-54900804 Msa1201710:intron 10.0%
!!! TTTTAGCATATAATTTTATT+TGG + chr8_1:54901548-54901567 None:intergenic 10.0%
!! AACTAAAAAAAAAAGTTAAT+GGG - chr8_1:54904836-54904855 Msa1201710:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:54903506-54903525 Msa1201710:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:54903506-54903525 Msa1201710:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:54903506-54903525 Msa1201710:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:54903506-54903525 Msa1201710:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:54903506-54903525 Msa1201710:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:54903506-54903525 Msa1201710:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:54903506-54903525 Msa1201710:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:54903506-54903525 Msa1201710:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:54903506-54903525 Msa1201710:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:54903506-54903525 Msa1201710:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:54903506-54903525 Msa1201710:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:54903506-54903525 Msa1201710:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:54903506-54903525 Msa1201710:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:54903506-54903525 Msa1201710:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:54903506-54903525 Msa1201710:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:54903506-54903525 Msa1201710:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:54903506-54903525 Msa1201710:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:54903506-54903525 Msa1201710:intron 100.0%
!! ATGAAAATAATAAAGAAACA+TGG + chr8_1:54899347-54899366 None:intergenic 15.0%
!!! GACAATTAATTACTATTTTA+AGG + chr8_1:54899539-54899558 None:intergenic 15.0%
!!! ATTAATTGTCCAAATTTTTT+AGG - chr8_1:54899549-54899568 Msa1201710:three_prime_UTR 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG + chr8_1:54900659-54900678 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr8_1:54900762-54900781 None:intergenic 15.0%
!! AAACTAACCAATAATTAATA+AGG - chr8_1:54900776-54900795 Msa1201710:intron 15.0%
!! ATCAATCTATTATATTTCTT+TGG - chr8_1:54902527-54902546 Msa1201710:intron 15.0%
!! TTATTAAATGAATCTTAAAG+TGG - chr8_1:54902633-54902652 Msa1201710:intron 15.0%
!! GAAAATATCAAAAACTAATT+TGG + chr8_1:54902907-54902926 None:intergenic 15.0%
!! AATTTGAGTAAAGATAATTA+TGG - chr8_1:54903038-54903057 Msa1201710:intron 15.0%
!! GAACTAAAAAAAAAAGTTAA+TGG - chr8_1:54904835-54904854 Msa1201710:intron 15.0%
!! CACAACAAATTTGATATTAA+AGG + chr8_1:54899509-54899528 None:intergenic 20.0%
!!! TATCAAATTTGTTGTGATTT+TGG - chr8_1:54899513-54899532 Msa1201710:three_prime_UTR 20.0%
!!! TATTACATTGGTTACAATTA+TGG + chr8_1:54899615-54899634 None:intergenic 20.0%
!!! TTGGTCTTTAATTATTACAT+TGG + chr8_1:54899627-54899646 None:intergenic 20.0%
!!! TTTTTATCCTTCATTTATTG+AGG + chr8_1:54899977-54899996 None:intergenic 20.0%
!! TATATAAACACTTACTAGTT+GGG + chr8_1:54900454-54900473 None:intergenic 20.0%
!! TTATATAAACACTTACTAGT+TGG + chr8_1:54900455-54900474 None:intergenic 20.0%
!! AACTAGTAAGTGTTTATATA+AGG - chr8_1:54900454-54900473 Msa1201710:CDS 20.0%
!! ACTAGTAAGTGTTTATATAA+GGG - chr8_1:54900455-54900474 Msa1201710:CDS 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr8_1:54900699-54900718 None:intergenic 20.0%
!! ATTATATATCCATCAACAAA+AGG - chr8_1:54901623-54901642 Msa1201710:intron 20.0%
!!! GACAAATGAATAATTTTGAT+TGG - chr8_1:54901775-54901794 Msa1201710:CDS 20.0%
!! TAAACCATTTACAATTATTG+AGG + chr8_1:54902802-54902821 None:intergenic 20.0%
!!! ATTTGGTATTATTTTTTGTC+AGG + chr8_1:54902890-54902909 None:intergenic 20.0%
!! ATATATATATATAGATGGAC+AGG + chr8_1:54903115-54903134 None:intergenic 20.0%
!!! CTTATATGCAAATTTGTTTA+AGG + chr8_1:54903188-54903207 None:intergenic 20.0%
!! TTGAAGAAACAAAATTATTG+AGG - chr8_1:54904542-54904561 Msa1201710:intron 20.0%
!! ACAAAATTATTGAGGTTTAT+AGG - chr8_1:54904550-54904569 Msa1201710:intron 20.0%
!!! TTATTTTCATTACGTACTTT+TGG - chr8_1:54904810-54904829 Msa1201710:intron 20.0%
!! GACTTTTAGCCTAAAAAATT+TGG + chr8_1:54899561-54899580 None:intergenic 25.0%
!! GCTTTTATAATCAAGCTATT+TGG + chr8_1:54899646-54899665 None:intergenic 25.0%
! AGGATAAAAAAACTTAGAGA+AGG - chr8_1:54899987-54900006 Msa1201710:CDS 25.0%
! TTCTTTCACTAATTGTGTTA+TGG - chr8_1:54900016-54900035 Msa1201710:CDS 25.0%
! AACACTTATACTTTAATCGT+TGG + chr8_1:54900155-54900174 None:intergenic 25.0%
! TTTGCAAAAAACGATTGAAT+TGG + chr8_1:54900300-54900319 None:intergenic 25.0%
! TTTATTGAGTTTAACCATGT+TGG - chr8_1:54900330-54900349 Msa1201710:CDS 25.0%
! GTTAATTCTAGTGAGAAAAT+TGG - chr8_1:54900360-54900379 Msa1201710:CDS 25.0%
! ATATAAACACTTACTAGTTG+GGG + chr8_1:54900453-54900472 None:intergenic 25.0%
! GTTTCTAAATTGGAAATATC+CGG + chr8_1:54900958-54900977 None:intergenic 25.0%
!!! AACAAAAAAACGGATTACTT+GGG + chr8_1:54901067-54901086 None:intergenic 25.0%
!!! TAACAAAAAAACGGATTACT+TGG + chr8_1:54901068-54901087 None:intergenic 25.0%
! CAGAGTTCATAACAAAAAAA+CGG + chr8_1:54901077-54901096 None:intergenic 25.0%
! AATGATTCGTTAACACAAAT+CGG + chr8_1:54901195-54901214 None:intergenic 25.0%
!!! TTTTATCCACTTTTCTTGAT+GGG - chr8_1:54901819-54901838 Msa1201710:CDS 25.0%
!!! TTATGATCATCGTAGTTTTT+TGG + chr8_1:54902025-54902044 None:intergenic 25.0%
! CAAACCTCAATAATTGTAAA+TGG - chr8_1:54902795-54902814 Msa1201710:intron 25.0%
! TCTGACTCACTATAATATAT+AGG + chr8_1:54902952-54902971 None:intergenic 25.0%
!!! TCCTCGATATTTTTATATCT+GGG + chr8_1:54902986-54903005 None:intergenic 25.0%
! ATAATTATGGAGACCAAAAT+GGG - chr8_1:54903051-54903070 Msa1201710:intron 25.0%
!! AAAGAAAAGATGATTTTGAG+TGG - chr8_1:54903141-54903160 Msa1201710:intron 25.0%
! TAATCAAAATAAGAGACGTT+CGG - chr8_1:54903325-54903344 Msa1201710:intron 25.0%
! AATTCAACGTGATCAAAAAT+GGG + chr8_1:54903844-54903863 None:intergenic 25.0%
! AAATTATTGAGGTTTATAGG+AGG - chr8_1:54904553-54904572 Msa1201710:intron 25.0%
! TTATAGGAGGAATTCTAATA+TGG - chr8_1:54904566-54904585 Msa1201710:intron 25.0%
!!! AAGACCAAATAAAAAGTGTT+TGG - chr8_1:54904593-54904612 Msa1201710:intron 25.0%
!!! TAAATCGAGGTATTCTTTTA+TGG + chr8_1:54904744-54904763 None:intergenic 25.0%
TGTAAGTGTGACAAAATAAG+TGG + chr8_1:54899448-54899467 None:intergenic 30.0%
!!! ACTCATCAGTTTTGAGTTAA+AGG - chr8_1:54900246-54900265 Msa1201710:CDS 30.0%
!!! CTCATCAGTTTTGAGTTAAA+GGG - chr8_1:54900247-54900266 Msa1201710:CDS 30.0%
!!! AATCGTTTTTTGCAAACGTA+TGG - chr8_1:54900304-54900323 Msa1201710:CDS 30.0%
AATTAACTAGTGTTCCAACA+TGG + chr8_1:54900347-54900366 None:intergenic 30.0%
GACTTAAAAATGTCTCACAT+TGG - chr8_1:54900420-54900439 Msa1201710:CDS 30.0%
AGTAAGTGTTTATATAAGGG+TGG - chr8_1:54900458-54900477 Msa1201710:CDS 30.0%
GTAAGTGTTTATATAAGGGT+GGG - chr8_1:54900459-54900478 Msa1201710:CDS 30.0%
TAAGTGTTTATATAAGGGTG+GGG - chr8_1:54900460-54900479 Msa1201710:CDS 30.0%
! TGTGCAGAGTATTAATTGAA+GGG + chr8_1:54900733-54900752 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr8_1:54900867-54900886 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr8_1:54900868-54900887 Msa1201710:intron 30.0%
!!! AACGCGTTTTGTTTCTAAAT+TGG + chr8_1:54900968-54900987 None:intergenic 30.0%
!! ACAAAAAAACGGATTACTTG+GGG + chr8_1:54901066-54901085 None:intergenic 30.0%
ATATACCGAACGAAATTACT+GGG + chr8_1:54901504-54901523 None:intergenic 30.0%
AATATACCGAACGAAATTAC+TGG + chr8_1:54901505-54901524 None:intergenic 30.0%
ATATATCCATCAACAAAAGG+TGG - chr8_1:54901626-54901645 Msa1201710:intron 30.0%
!!! TTCATAATACATGTCGCTTT+TGG + chr8_1:54901712-54901731 None:intergenic 30.0%
AAGCGACATGTATTATGAAA+CGG - chr8_1:54901713-54901732 Msa1201710:intron 30.0%
AAGTGGATAAAAGTAACTCA+TGG + chr8_1:54901811-54901830 None:intergenic 30.0%
!! CTTTTATCCACTTTTCTTGA+TGG - chr8_1:54901818-54901837 Msa1201710:CDS 30.0%
!! ACCATTATAGTTGATAGTGT+AGG - chr8_1:54901993-54902012 Msa1201710:CDS 30.0%
TCCTACACTATCAACTATAA+TGG + chr8_1:54901997-54902016 None:intergenic 30.0%
! AAATGTGAGAGATTCTAAGA+TGG - chr8_1:54902043-54902062 Msa1201710:CDS 30.0%
! GACTCATTCATAGATGATTT+TGG - chr8_1:54902329-54902348 Msa1201710:intron 30.0%
AGCGAGTAGTTAATAAGATT+TGG - chr8_1:54902681-54902700 Msa1201710:intron 30.0%
TCCCAGATATAAAAATATCG+AGG - chr8_1:54902982-54903001 Msa1201710:intron 30.0%
!! GTCCTCGATATTTTTATATC+TGG + chr8_1:54902987-54903006 None:intergenic 30.0%
GATAATTATGGAGACCAAAA+TGG - chr8_1:54903050-54903069 Msa1201710:intron 30.0%
! CAAAGAATTAATGCCCATTT+TGG + chr8_1:54903067-54903086 None:intergenic 30.0%
TTTATCAAAGATAATTCGCG+TGG - chr8_1:54903088-54903107 Msa1201710:intron 30.0%
AGACAATTGAAGCATAAATG+TGG - chr8_1:54903479-54903498 Msa1201710:intron 30.0%
GACAATTGAAGCATAAATGT+GGG - chr8_1:54903480-54903499 Msa1201710:intron 30.0%
! TTCGTGCAATATTTTGTAGA+TGG - chr8_1:54903546-54903565 Msa1201710:intron 30.0%
GTATTCACTTCATCAATACA+TGG - chr8_1:54903737-54903756 Msa1201710:intron 30.0%
GAATTCAACGTGATCAAAAA+TGG + chr8_1:54903845-54903864 None:intergenic 30.0%
! AATTTGGTTTCTTGATCATC+GGG + chr8_1:54904066-54904085 None:intergenic 30.0%
! CAATTTGGTTTCTTGATCAT+CGG + chr8_1:54904067-54904086 None:intergenic 30.0%
ATCTGTTGGGATATACAATT+TGG + chr8_1:54904082-54904101 None:intergenic 30.0%
AAATTGTATATCCCAACAGA+TGG - chr8_1:54904081-54904100 Msa1201710:intron 30.0%
!! GTGACCAAACACTTTTTATT+TGG + chr8_1:54904600-54904619 None:intergenic 30.0%
TCACAATGACCAAATCAATA+GGG + chr8_1:54904721-54904740 None:intergenic 30.0%
TACCTCGATTTATTGTCATT+TGG - chr8_1:54904752-54904771 Msa1201710:intron 30.0%
TTCCAAATGACAATAAATCG+AGG + chr8_1:54904757-54904776 None:intergenic 30.0%
TCACAATAAACCAAGTTTCA+GGG - chr8_1:54904867-54904886 Msa1201710:intron 30.0%
! AGGCTAAAAGTCATCACTTT+TGG - chr8_1:54899569-54899588 Msa1201710:three_prime_UTR 35.0%
!! TTTGATTTCGAGTCTTGTTG+GGG + chr8_1:54899746-54899765 None:intergenic 35.0%
!! GTTTGATTTCGAGTCTTGTT+GGG + chr8_1:54899747-54899766 None:intergenic 35.0%
! TGTTTGATTTCGAGTCTTGT+TGG + chr8_1:54899748-54899767 None:intergenic 35.0%
AAAGAAAAAAGAGACGCAGA+AGG - chr8_1:54899912-54899931 Msa1201710:CDS 35.0%
AAGAAAAAAGAGACGCAGAA+GGG - chr8_1:54899913-54899932 Msa1201710:CDS 35.0%
CACTCATCCTCAATAAATGA+AGG - chr8_1:54899967-54899986 Msa1201710:CDS 35.0%
GTCTCTTTACTTTACAACTC+AGG - chr8_1:54900116-54900135 Msa1201710:CDS 35.0%
AGTACCCATTCTTTCATAAC+AGG - chr8_1:54900213-54900232 Msa1201710:CDS 35.0%
GTACCCATTCTTTCATAACA+GGG - chr8_1:54900214-54900233 Msa1201710:CDS 35.0%
TACCCATTCTTTCATAACAG+GGG - chr8_1:54900215-54900234 Msa1201710:CDS 35.0%
AACTCAAAACTGATGAGTCA+TGG + chr8_1:54900244-54900263 None:intergenic 35.0%
ACTATGAGAAACTAGTGTGT+GGG - chr8_1:54900392-54900411 Msa1201710:CDS 35.0%
ATTCACCCGTTCACAAAAAT+GGG + chr8_1:54900514-54900533 None:intergenic 35.0%
!!! GACACTCATTTTGAAACAGA+GGG + chr8_1:54900629-54900648 None:intergenic 35.0%
! GTGTGCAGAGTATTAATTGA+AGG + chr8_1:54900734-54900753 None:intergenic 35.0%
! AATTTTCTGGATACGCGTTT+TGG + chr8_1:54900935-54900954 None:intergenic 35.0%
! TGGAAATATCCGGAATTTTC+TGG + chr8_1:54900948-54900967 None:intergenic 35.0%
AAACAAAACGCGTTTGCTTA+AGG - chr8_1:54900974-54900993 Msa1201710:intron 35.0%
! TCCTTTTATAGGCAGAGTAT+AGG + chr8_1:54901100-54901119 None:intergenic 35.0%
!! ATTTGGTGTGAAGAATGAGT+GGG + chr8_1:54901131-54901150 None:intergenic 35.0%
GAAACATCAACTGTGAGATT+TGG + chr8_1:54901148-54901167 None:intergenic 35.0%
ATTCGTTAACACAAATCGGA+GGG + chr8_1:54901191-54901210 None:intergenic 35.0%
AACGATTGAACCATACTTTG+AGG - chr8_1:54901324-54901343 Msa1201710:intron 35.0%
GAGAATTACACCTCAAAGTA+TGG + chr8_1:54901337-54901356 None:intergenic 35.0%
ATATACTCGAAACAGTGATC+TGG - chr8_1:54901379-54901398 Msa1201710:intron 35.0%
TATACTCGAAACAGTGATCT+GGG - chr8_1:54901380-54901399 Msa1201710:intron 35.0%
! TTCTATCCACCTTTTGTTGA+TGG + chr8_1:54901635-54901654 None:intergenic 35.0%
GACATGTATTATGAAACGGA+TGG - chr8_1:54901717-54901736 Msa1201710:intron 35.0%
TGGCGTCTTCAAATCAATAT+TGG + chr8_1:54902111-54902130 None:intergenic 35.0%
GTTCTATAGAAGTAAACGCT+GGG + chr8_1:54902146-54902165 None:intergenic 35.0%
GAAGAATTTGGAAATGGTGT+TGG + chr8_1:54902168-54902187 None:intergenic 35.0%
GAGAGCTTTCTTCATAATCT+TGG + chr8_1:54902195-54902214 None:intergenic 35.0%
!! TCGTTTTTGTTACGACAAAG+AGG - chr8_1:54902250-54902269 Msa1201710:intron 35.0%
ATCTTATTAACTACTCGCTC+TGG + chr8_1:54902680-54902699 None:intergenic 35.0%
CATGAATTCCTCTCGAAAAT+GGG + chr8_1:54902773-54902792 None:intergenic 35.0%
!! CATTTTCGAGAGGAATTCAT+GGG - chr8_1:54902772-54902791 Msa1201710:intron 35.0%
TGTGTTGCGAGAAAATTATG+CGG + chr8_1:54902859-54902878 None:intergenic 35.0%
! GTGCAATATTTTGTAGATGG+AGG - chr8_1:54903549-54903568 Msa1201710:intron 35.0%
! TATTTTGTAGATGGAGGAGA+TGG - chr8_1:54903555-54903574 Msa1201710:intron 35.0%
CAGGTAACATACTTCAAATG+TGG - chr8_1:54903661-54903680 Msa1201710:intron 35.0%
GTAACATACTTCAAATGTGG+AGG - chr8_1:54903664-54903683 Msa1201710:intron 35.0%
AGTAGTGTCCGATCAATAAA+TGG + chr8_1:54903799-54903818 None:intergenic 35.0%
AAAGCTAAGTCCAAAGAAGT+TGG - chr8_1:54903964-54903983 Msa1201710:intron 35.0%
ATCTCATGTCAAAACCAACA+TGG - chr8_1:54904187-54904206 Msa1201710:intron 35.0%
AAATCTTGCGATCGTTAGTT+GGG - chr8_1:54904338-54904357 Msa1201710:intron 35.0%
CCAAAATCAGCATCATAGAT+TGG + chr8_1:54904372-54904391 None:intergenic 35.0%
!!! CCAATCTATGATGCTGATTT+TGG - chr8_1:54904369-54904388 Msa1201710:intron 35.0%
!!! TCTATGATGCTGATTTTGGT+TGG - chr8_1:54904373-54904392 Msa1201710:intron 35.0%
!!! CTATGATGCTGATTTTGGTT+GGG - chr8_1:54904374-54904393 Msa1201710:intron 35.0%
!!! TATGATGCTGATTTTGGTTG+GGG - chr8_1:54904375-54904394 Msa1201710:intron 35.0%
ATTCCAAGCTCAACAAATGA+TGG - chr8_1:54904450-54904469 Msa1201710:intron 35.0%
TTCCAAGCTCAACAAATGAT+GGG - chr8_1:54904451-54904470 Msa1201710:intron 35.0%
! AAATGATGGGAGTTTATCTC+TGG - chr8_1:54904464-54904483 Msa1201710:intron 35.0%
!! CATGGAAGTGTTTAAGGAAT+TGG - chr8_1:54904509-54904528 Msa1201710:intron 35.0%
ATGACCAAATCAATAGGGTT+TGG + chr8_1:54904716-54904735 None:intergenic 35.0%
GTCACAATGACCAAATCAAT+AGG + chr8_1:54904722-54904741 None:intergenic 35.0%
CTCACAATAAACCAAGTTTC+AGG - chr8_1:54904866-54904885 Msa1201710:intron 35.0%
CACAATAAACCAAGTTTCAG+GGG - chr8_1:54904868-54904887 Msa1201710:intron 35.0%
ACAATAAACCAAGTTTCAGG+GGG - chr8_1:54904869-54904888 Msa1201710:intron 35.0%
ACTTGAGAAGATGATCGATG+GGG + chr8_1:54899303-54899322 None:intergenic 40.0%
GACTTGAGAAGATGATCGAT+GGG + chr8_1:54899304-54899323 None:intergenic 40.0%
AGACTTGAGAAGATGATCGA+TGG + chr8_1:54899305-54899324 None:intergenic 40.0%
AGAAAAAAGAGACGCAGAAG+GGG - chr8_1:54899914-54899933 Msa1201710:CDS 40.0%
CACCCCTGTTATGAAAGAAT+GGG + chr8_1:54900220-54900239 None:intergenic 40.0%
ACACCCCTGTTATGAAAGAA+TGG + chr8_1:54900221-54900240 None:intergenic 40.0%
CACTATGAGAAACTAGTGTG+TGG - chr8_1:54900391-54900410 Msa1201710:CDS 40.0%
CATTCACCCGTTCACAAAAA+TGG + chr8_1:54900515-54900534 None:intergenic 40.0%
!!! CGACACTCATTTTGAAACAG+AGG + chr8_1:54900630-54900649 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr8_1:54900872-54900891 Msa1201710:intron 40.0%
AACGCGTATCCAGAAAATTC+CGG - chr8_1:54900936-54900955 Msa1201710:intron 40.0%
AACGCGTTTGCTTAAGGATT+AGG - chr8_1:54900980-54900999 Msa1201710:intron 40.0%
GCCTATACTCTGCCTATAAA+AGG - chr8_1:54901096-54901115 Msa1201710:intron 40.0%
! TTTGGTGTGAAGAATGAGTG+GGG + chr8_1:54901130-54901149 None:intergenic 40.0%
!! GATTTGGTGTGAAGAATGAG+TGG + chr8_1:54901132-54901151 None:intergenic 40.0%
GATTCGTTAACACAAATCGG+AGG + chr8_1:54901192-54901211 None:intergenic 40.0%
TAGAAGATGAAGAAACCGAC+GGG + chr8_1:54901241-54901260 None:intergenic 40.0%
GTAGAAGATGAAGAAACCGA+CGG + chr8_1:54901242-54901261 None:intergenic 40.0%
TAGTCTACCTTGCACAAACT+AGG - chr8_1:54901432-54901451 Msa1201710:intron 40.0%
AGTCTACCTTGCACAAACTA+GGG - chr8_1:54901433-54901452 Msa1201710:intron 40.0%
!! GCTTTCTTTAAGACGTTTCG+CGG + chr8_1:54901464-54901483 None:intergenic 40.0%
ACTCACCCAGTAATTTCGTT+CGG - chr8_1:54901496-54901515 Msa1201710:intron 40.0%
TGTTCACCCATCAAGAAAAG+TGG + chr8_1:54901828-54901847 None:intergenic 40.0%
GGTTCTATAGAAGTAAACGC+TGG + chr8_1:54902147-54902166 None:intergenic 40.0%
! AATCTTGGCGTCGAAGAATT+TGG + chr8_1:54902180-54902199 None:intergenic 40.0%
TATGAAGAAAGCTCTCAGCA+AGG - chr8_1:54902199-54902218 Msa1201710:intron 40.0%
GCTTGTCTCATTCTATCCAA+TGG - chr8_1:54902223-54902242 Msa1201710:intron 40.0%
TAACAAAAACGACCTGCCAT+TGG + chr8_1:54902242-54902261 None:intergenic 40.0%
AGTTTGCACAAGTGCAATGT+GGG + chr8_1:54902365-54902384 None:intergenic 40.0%
AAGTTTGCACAAGTGCAATG+TGG + chr8_1:54902366-54902385 None:intergenic 40.0%
TGAAACATACCTGCAACACT+AGG + chr8_1:54902433-54902452 None:intergenic 40.0%
!! CATTATCTCCCATTTTCGAG+AGG - chr8_1:54902762-54902781 Msa1201710:intron 40.0%
CCATGAATTCCTCTCGAAAA+TGG + chr8_1:54902774-54902793 None:intergenic 40.0%
!! CCATTTTCGAGAGGAATTCA+TGG - chr8_1:54902771-54902790 Msa1201710:intron 40.0%
GTGTTGCGAGAAAATTATGC+GGG + chr8_1:54902858-54902877 None:intergenic 40.0%
ATAAATTAGGACGAGTCCAG+TGG + chr8_1:54903411-54903430 None:intergenic 40.0%
ACTGGACTCGTCCTAATTTA+TGG - chr8_1:54903410-54903429 Msa1201710:intron 40.0%
!! TAATTTATGGCGGATGGTGA+CGG - chr8_1:54903423-54903442 Msa1201710:intron 40.0%
TTGAAGCATAAATGTGGGTG+TGG - chr8_1:54903485-54903504 Msa1201710:intron 40.0%
TGAAGCATAAATGTGGGTGT+GGG - chr8_1:54903486-54903505 Msa1201710:intron 40.0%
CGAACTTTAACTATTTGCGC+AGG - chr8_1:54903642-54903661 Msa1201710:intron 40.0%
CCATCCCACCATTTATTGAT+CGG - chr8_1:54903788-54903807 Msa1201710:intron 40.0%
GTGTCCGATCAATAAATGGT+GGG + chr8_1:54903795-54903814 None:intergenic 40.0%
AGTGTCCGATCAATAAATGG+TGG + chr8_1:54903796-54903815 None:intergenic 40.0%
!! TGATCAAAAATGGGTTGTGG+TGG + chr8_1:54903835-54903854 None:intergenic 40.0%
!! ACGTGATCAAAAATGGGTTG+TGG + chr8_1:54903838-54903857 None:intergenic 40.0%
TGTTGTGGAATCTTCATGGA+TGG + chr8_1:54903877-54903896 None:intergenic 40.0%
TTGTTACATTCTCTGAGCCA+GGG + chr8_1:54903903-54903922 None:intergenic 40.0%
GATTGTGTTGCCAACTTCTT+TGG + chr8_1:54903977-54903996 None:intergenic 40.0%
ACCACTTATGAGATGTTAGC+TGG - chr8_1:54904003-54904022 Msa1201710:intron 40.0%
ACCAGCTAACATCTCATAAG+TGG + chr8_1:54904007-54904026 None:intergenic 40.0%
AGATGTTAGCTGGTCATGTT+TGG - chr8_1:54904013-54904032 Msa1201710:intron 40.0%
ACCTTGATCTTCCATCTGTT+GGG + chr8_1:54904095-54904114 None:intergenic 40.0%
AACCTTGATCTTCCATCTGT+TGG + chr8_1:54904096-54904115 None:intergenic 40.0%
! AGATCACTTGCTAGAGCTAT+AGG + chr8_1:54904171-54904190 None:intergenic 40.0%
GACACTTAACATTAGCGTTG+CGG + chr8_1:54904317-54904336 None:intergenic 40.0%
CAACTAACGATCGCAAGATT+TGG + chr8_1:54904339-54904358 None:intergenic 40.0%
CAAATCTTGCGATCGTTAGT+TGG - chr8_1:54904337-54904356 Msa1201710:intron 40.0%
TTCTCTTCAACATGAGCACA+TGG - chr8_1:54904491-54904510 Msa1201710:intron 40.0%
!! TGAGCACATGGAAGTGTTTA+AGG - chr8_1:54904503-54904522 Msa1201710:intron 40.0%
! GTGTCCAAACCCTATTGATT+TGG - chr8_1:54904709-54904728 Msa1201710:intron 40.0%
TACTATAACCCCCTGAAACT+TGG + chr8_1:54904880-54904899 None:intergenic 40.0%
CTTCTCAAGTCTCAACCTCA+AGG - chr8_1:54899313-54899332 Msa1201710:three_prime_UTR 45.0%
!! AACATGGTGTCGTTACCTTG+AGG + chr8_1:54899331-54899350 None:intergenic 45.0%
CATCATCTTGTGCGATTGTG+CGG + chr8_1:54899801-54899820 None:intergenic 45.0%
CGTGATTTCGTTGTCTTGTG+CGG + chr8_1:54899835-54899854 None:intergenic 45.0%
CACAAAAATGGGTACCCCAA+GGG + chr8_1:54900503-54900522 None:intergenic 45.0%
TCACAAAAATGGGTACCCCA+AGG + chr8_1:54900504-54900523 None:intergenic 45.0%
!! GGGGTACCCATTTTTGTGAA+CGG - chr8_1:54900505-54900524 Msa1201710:CDS 45.0%
!! GGGTACCCATTTTTGTGAAC+GGG - chr8_1:54900506-54900525 Msa1201710:CDS 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr8_1:54900871-54900890 Msa1201710:intron 45.0%
GCGTAAAACGCGTTTGCTTA+AGG - chr8_1:54901024-54901043 Msa1201710:intron 45.0%
! CACAGTTGATGTTTCCTGTG+CGG - chr8_1:54901153-54901172 Msa1201710:intron 45.0%
TTGATCGAAGCCACTCGATA+CGG + chr8_1:54901305-54901324 None:intergenic 45.0%
!! TGATCTGGGCTGTTTTATCC+TGG - chr8_1:54901394-54901413 Msa1201710:intron 45.0%
ACGTCTTAAAGAAAGCGACC+TGG - chr8_1:54901468-54901487 Msa1201710:intron 45.0%
TAAGATGGTGCAACCATCAG+AGG - chr8_1:54902058-54902077 Msa1201710:CDS 45.0%
! GGCGTCGAAGAATTTGGAAA+TGG + chr8_1:54902174-54902193 None:intergenic 45.0%
GTCTCATTCTATCCAATGGC+AGG - chr8_1:54902227-54902246 Msa1201710:intron 45.0%
CCGTGCGAGTAATCAACAAT+GGG + chr8_1:54902392-54902411 None:intergenic 45.0%
! CCCATTGTTGATTACTCGCA+CGG - chr8_1:54902389-54902408 Msa1201710:intron 45.0%
TCCGTGCGAGTAATCAACAA+TGG + chr8_1:54902393-54902412 None:intergenic 45.0%
GTTGATTACTCGCACGGAAT+TGG - chr8_1:54902395-54902414 Msa1201710:intron 45.0%
ACATACCTGCAACACTAGGA+GGG + chr8_1:54902429-54902448 None:intergenic 45.0%
AACATACCTGCAACACTAGG+AGG + chr8_1:54902430-54902449 None:intergenic 45.0%
GGACTCGTCCTAATTTATGG+CGG - chr8_1:54903413-54903432 Msa1201710:intron 45.0%
! TCGTCCTAATTTATGGCGGA+TGG - chr8_1:54903417-54903436 Msa1201710:intron 45.0%
GTCACCATCCGCCATAAATT+AGG + chr8_1:54903424-54903443 None:intergenic 45.0%
! GGTTGTGATGATGTTGCAGT+TGG - chr8_1:54903444-54903463 Msa1201710:intron 45.0%
TGATGTTGCAGTTGGAGCTT+TGG - chr8_1:54903452-54903471 Msa1201710:intron 45.0%
GAAGCATAAATGTGGGTGTG+GGG - chr8_1:54903487-54903506 Msa1201710:intron 45.0%
AAGCATAAATGTGGGTGTGG+GGG - chr8_1:54903488-54903507 Msa1201710:intron 45.0%
AAATGTGGAGGAGTCTCACT+AGG - chr8_1:54903676-54903695 Msa1201710:intron 45.0%
TGGGATGCACCATTATCTAG+CGG - chr8_1:54903702-54903721 Msa1201710:intron 45.0%
ATGCACCATTATCTAGCGGA+TGG - chr8_1:54903706-54903725 Msa1201710:intron 45.0%
AAGCTCCATCCGCTAGATAA+TGG + chr8_1:54903714-54903733 None:intergenic 45.0%
ACATGGTCAGATGTAACTCG+CGG - chr8_1:54903754-54903773 Msa1201710:intron 45.0%
! CCGATCAATAAATGGTGGGA+TGG + chr8_1:54903791-54903810 None:intergenic 45.0%
!! AAATGGGTTGTGGTGGATCA+CGG + chr8_1:54903828-54903847 None:intergenic 45.0%
TGTTACATTCTCTGAGCCAG+GGG + chr8_1:54903902-54903921 None:intergenic 45.0%
CTTGTTACATTCTCTGAGCC+AGG + chr8_1:54903904-54903923 None:intergenic 45.0%
TCCCAACAGATGGAAGATCA+AGG - chr8_1:54904091-54904110 Msa1201710:intron 45.0%
! ACTTGCTAGAGCTATAGGTG+CGG + chr8_1:54904166-54904185 None:intergenic 45.0%
CTGCTTACAGCATACCATGT+TGG + chr8_1:54904204-54904223 None:intergenic 45.0%
!!! ATGCTGATTTTGGTTGGGGA+AGG - chr8_1:54904379-54904398 Msa1201710:intron 45.0%
! TTGGGGAAGGCCAATTTTCA+TGG - chr8_1:54904392-54904411 Msa1201710:intron 45.0%
! TGGGGAAGGCCAATTTTCAT+GGG - chr8_1:54904393-54904412 Msa1201710:intron 45.0%
! CTCCCATCATTTGTTGAGCT+TGG + chr8_1:54904456-54904475 None:intergenic 45.0%
!! ATATAATTTAAATATATTGA+TGG + chr8_1:54901571-54901590 None:intergenic 5.0%
!! TATATATATATATATATAGA+TGG + chr8_1:54903120-54903139 None:intergenic 5.0%
!! ATAAAAAAACAAAATAAAAA+TGG + chr8_1:54904794-54904813 None:intergenic 5.0%
TGAGAAGATGATCGATGGGG+AGG + chr8_1:54899300-54899319 None:intergenic 50.0%
! ACGCGTTTTACGCGTGACTT+GGG + chr8_1:54901017-54901036 None:intergenic 50.0%
! AACGCGTTTTACGCGTGACT+TGG + chr8_1:54901018-54901037 None:intergenic 50.0%
TCTACTCCTTTCTGTCCCGT+CGG - chr8_1:54901223-54901242 Msa1201710:intron 50.0%
AAGAAACCGACGGGACAGAA+AGG + chr8_1:54901232-54901251 None:intergenic 50.0%
TCTACTCCTTTCTGTCCCGT+CGG - chr8_1:54901223-54901242 Msa1201710:intron 50.0%
ACCGCTCTATTCGAAACCGA+CGG + chr8_1:54901276-54901295 None:intergenic 50.0%
!! GGGCTGTTTTATCCTGGAGA+CGG - chr8_1:54901400-54901419 Msa1201710:intron 50.0%
! GCACTACCCTAGTTTGTGCA+AGG + chr8_1:54901442-54901461 None:intergenic 50.0%
TTACGACAAAGAGGACCGAG+TGG - chr8_1:54902259-54902278 Msa1201710:intron 50.0%
AGATTGACTGCGACGGTCAA+GGG - chr8_1:54902282-54902301 Msa1201710:intron 50.0%
CATACCTGCAACACTAGGAG+GGG + chr8_1:54902428-54902447 None:intergenic 50.0%
GAGACAGAGAGATGGTGTTC+CGG + chr8_1:54903386-54903405 None:intergenic 50.0%
AATTAGGACGAGTCCAGTGG+AGG + chr8_1:54903408-54903427 None:intergenic 50.0%
! TGTTGCAGTTGGAGCTTTGG+AGG - chr8_1:54903455-54903474 Msa1201710:intron 50.0%
AGCATAAATGTGGGTGTGGG+GGG - chr8_1:54903489-54903508 Msa1201710:intron 50.0%
GAGGAGTCTCACTAGGTGTT+GGG - chr8_1:54903683-54903702 Msa1201710:intron 50.0%
! TATCTAGCGGATGGAGCTTC+TGG - chr8_1:54903715-54903734 Msa1201710:intron 50.0%
!! AATGGGTTGTGGTGGATCAC+GGG + chr8_1:54903827-54903846 None:intergenic 50.0%
GGGCTGTTGTGGAATCTTCA+TGG + chr8_1:54903881-54903900 None:intergenic 50.0%
GTTACATTCTCTGAGCCAGG+GGG + chr8_1:54903901-54903920 None:intergenic 50.0%
GTTGCAACCTCCACTTCCAT+CGG - chr8_1:54904113-54904132 Msa1201710:intron 50.0%
TTGCAACCTCCACTTCCATC+GGG - chr8_1:54904114-54904133 Msa1201710:intron 50.0%
AAGTAACCCGATGGAAGTGG+AGG + chr8_1:54904123-54904142 None:intergenic 50.0%
CCACTTCCATCGGGTTACTT+CGG - chr8_1:54904123-54904142 Msa1201710:intron 50.0%
ACATTGCCGAAGTAACCCGA+TGG + chr8_1:54904132-54904151 None:intergenic 50.0%
! AGGCCAATTTTCATGGGACC+TGG - chr8_1:54904399-54904418 Msa1201710:intron 50.0%
! GGCCAATTTTCATGGGACCT+GGG - chr8_1:54904400-54904419 Msa1201710:intron 50.0%
! GCCAATTTTCATGGGACCTG+GGG - chr8_1:54904401-54904420 Msa1201710:intron 50.0%
GACGCAGAAGGGGTGATTGT+AGG - chr8_1:54899924-54899943 Msa1201710:CDS 55.0%
! CGCGTTTTACGCGTGACTTG+GGG + chr8_1:54901016-54901035 None:intergenic 55.0%
! GGGGCGAGCTCTCCTTTTAT+AGG + chr8_1:54901111-54901130 None:intergenic 55.0%
GGAGAAGAGAGAAACCGCAC+AGG + chr8_1:54901170-54901189 None:intergenic 55.0%
TCGAAACCGACGGGACAGAA+AGG + chr8_1:54901266-54901285 None:intergenic 55.0%
CCGCTCTATTCGAAACCGAC+GGG + chr8_1:54901275-54901294 None:intergenic 55.0%
!! CCCGTCGGTTTCGAATAGAG+CGG - chr8_1:54901272-54901291 Msa1201710:intron 55.0%
CGGTTACGTACCGTATCGAG+TGG - chr8_1:54901292-54901311 Msa1201710:intron 55.0%
! GTTTTATCCTGGAGACGGCG+TGG - chr8_1:54901405-54901424 Msa1201710:intron 55.0%
TTACTGGGTGAGTCACGACC+AGG + chr8_1:54901489-54901508 None:intergenic 55.0%
GATGGTGCAACCATCAGAGG+AGG - chr8_1:54902061-54902080 Msa1201710:CDS 55.0%
TGTCGTGCAACCTCCTCTGA+TGG + chr8_1:54902074-54902093 None:intergenic 55.0%
AGAGGAGGTTGCACGACAGA+GGG - chr8_1:54902076-54902095 Msa1201710:CDS 55.0%
CGTCGCAGTCAATCTCCACT+CGG + chr8_1:54902277-54902296 None:intergenic 55.0%
CGAGTGGAGATTGACTGCGA+CGG - chr8_1:54902275-54902294 Msa1201710:intron 55.0%
GAGATTGACTGCGACGGTCA+AGG - chr8_1:54902281-54902300 Msa1201710:intron 55.0%
GATTGACTGCGACGGTCAAG+GGG - chr8_1:54902283-54902302 Msa1201710:intron 55.0%
GTATCCCCTCCTAGTGTTGC+AGG - chr8_1:54902421-54902440 Msa1201710:intron 55.0%
GGTATCTCGCAGCAGAGATG+AGG + chr8_1:54903360-54903379 None:intergenic 55.0%
TCTGCTGCGAGATACCTCAC+CGG - chr8_1:54903364-54903383 Msa1201710:intron 55.0%
AGAGAGATGGTGTTCCGGTG+AGG + chr8_1:54903381-54903400 None:intergenic 55.0%
CAGTGGAGGAGACAGAGAGA+TGG + chr8_1:54903394-54903413 None:intergenic 55.0%
CATCTCTCTGTCTCCTCCAC+TGG - chr8_1:54903392-54903411 Msa1201710:intron 55.0%
GCATAAATGTGGGTGTGGGG+GGG - chr8_1:54903490-54903509 Msa1201710:intron 55.0%
CATAAATGTGGGTGTGGGGG+GGG - chr8_1:54903491-54903510 Msa1201710:intron 55.0%
ATAAATGTGGGTGTGGGGGG+GGG - chr8_1:54903492-54903511 Msa1201710:intron 55.0%
GGAGGAGTCTCACTAGGTGT+TGG - chr8_1:54903682-54903701 Msa1201710:intron 55.0%
AAGATTCCACAACAGCCCCC+TGG - chr8_1:54903883-54903902 Msa1201710:intron 55.0%
CCGAAGTAACCCGATGGAAG+TGG + chr8_1:54904126-54904145 None:intergenic 55.0%
GCCCCAGGTCCCATGAAAAT+TGG + chr8_1:54904405-54904424 None:intergenic 55.0%
AGTCCATCACAATCAGCCCC+AGG + chr8_1:54904420-54904439 None:intergenic 55.0%
TGATCGATGGGGAGGAGCAG+AGG + chr8_1:54899292-54899311 None:intergenic 60.0%
TAAGGGTGGGGTGACCTCCA+AGG - chr8_1:54900472-54900491 Msa1201710:CDS 60.0%
AAGGGTGGGGTGACCTCCAA+GGG - chr8_1:54900473-54900492 Msa1201710:CDS 60.0%
! ACCTCCAAGGGTGTGCCCTT+GGG - chr8_1:54900485-54900504 Msa1201710:CDS 60.0%
CTAACAACCACGCCGTCTCC+AGG + chr8_1:54901415-54901434 None:intergenic 60.0%
CAGAGGAGGTTGCACGACAG+AGG - chr8_1:54902075-54902094 Msa1201710:CDS 60.0%
AGGTTGCACGACAGAGGGTG+TGG - chr8_1:54902081-54902100 Msa1201710:CDS 60.0%
ACGCTGGGCGTGTGCACATT+TGG + chr8_1:54902131-54902150 None:intergenic 60.0%
TAAATGTGGGTGTGGGGGGG+GGG - chr8_1:54903493-54903512 Msa1201710:intron 60.0%
GGACCTGGGGCTGATTGTGA+TGG - chr8_1:54904414-54904433 Msa1201710:intron 60.0%
! GACCTCCAAGGGTGTGCCCT+TGG - chr8_1:54900484-54900503 Msa1201710:CDS 65.0%
! CCTCCAAGGGTGTGCCCTTG+GGG - chr8_1:54900486-54900505 Msa1201710:CDS 65.0%
! GTACCCCAAGGGCACACCCT+TGG + chr8_1:54900492-54900511 None:intergenic 65.0%
ATCACGCGCGACGACAACGC+CGG - chr8_1:54900551-54900570 Msa1201710:intron 65.0%
CCAAGACCCAAGCCCAAGCC+CGG + chr8_1:54900582-54900601 None:intergenic 65.0%
AAATGTGGGTGTGGGGGGGG+GGG - chr8_1:54903494-54903513 Msa1201710:intron 65.0%
TCTGAGCCAGGGGGCTGTTG+TGG + chr8_1:54903892-54903911 None:intergenic 65.0%
! CCCCAAGGGCACACCCTTGG+AGG + chr8_1:54900489-54900508 None:intergenic 70.0%
CCGGGCTTGGGCTTGGGTCT+TGG - chr8_1:54900579-54900598 Msa1201710:intron 70.0%
AATGTGGGTGTGGGGGGGGG+GGG - chr8_1:54903495-54903514 Msa1201710:intron 70.0%
ACCCAAGCCCAAGCCCGGCC+CGG + chr8_1:54900577-54900596 None:intergenic 75.0%
ATGTGGGTGTGGGGGGGGGG+GGG - chr8_1:54903496-54903515 Msa1201710:intron 75.0%
! CGCGCGACGACAACGCCGGC+CGG - chr8_1:54900555-54900574 Msa1201710:intron 80.0%
! GCGCGACGACAACGCCGGCC+GGG - chr8_1:54900556-54900575 Msa1201710:intron 80.0%
! GACGACAACGCCGGCCGGGC+CGG - chr8_1:54900560-54900579 Msa1201710:intron 80.0%
! ACGACAACGCCGGCCGGGCC+GGG - chr8_1:54900561-54900580 Msa1201710:intron 80.0%
! AAGCCCAAGCCCGGCCCGGC+CGG + chr8_1:54900573-54900592 None:intergenic 80.0%
! GCCGGGCCGGGCTTGGGCTT+GGG - chr8_1:54900573-54900592 Msa1201710:intron 80.0%
! TGTGGGTGTGGGGGGGGGGG+GGG - chr8_1:54903497-54903516 Msa1201710:intron 80.0%
! AACGCCGGCCGGGCCGGGCT+TGG - chr8_1:54900566-54900585 Msa1201710:intron 85.0%
! ACGCCGGCCGGGCCGGGCTT+GGG - chr8_1:54900567-54900586 Msa1201710:intron 85.0%
! GGCCGGGCCGGGCTTGGGCT+TGG - chr8_1:54900572-54900591 Msa1201710:intron 85.0%
! GTGGGTGTGGGGGGGGGGGG+GGG - chr8_1:54903498-54903517 Msa1201710:intron 85.0%
! TGGGTGTGGGGGGGGGGGGG+GGG - chr8_1:54903499-54903518 Msa1201710:intron 85.0%
! GGGTGTGGGGGGGGGGGGGG+GGG - chr8_1:54903500-54903519 Msa1201710:intron 90.0%
! GGTGTGGGGGGGGGGGGGGG+GGG - chr8_1:54903501-54903520 Msa1201710:intron 90.0%
! GTGTGGGGGGGGGGGGGGGG+GGG - chr8_1:54903502-54903521 Msa1201710:intron 90.0%
! TGTGGGGGGGGGGGGGGGGG+GGG - chr8_1:54903503-54903522 Msa1201710:intron 90.0%
! GTGGGGGGGGGGGGGGGGGG+GGG - chr8_1:54903504-54903523 Msa1201710:intron 95.0%
! TGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:54903505-54903524 Msa1201710:intron 95.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 54899250 54904955 54899250 ID=Msa1201710;Name=Msa1201710
chr8_1 mRNA 54899250 54904955 54899250 ID=Msa1201710-mRNA-1;Parent=Msa1201710;Name=Msa1201710-mRNA-1;_AED=0.31;_eAED=0.31;_QI=105|1|1|1|0.5|0.33|3|410|429
chr8_1 exon 54899250 54900541 54899250 ID=Msa1201710-mRNA-1:exon:17771;Parent=Msa1201710-mRNA-1
chr8_1 exon 54901763 54902190 54901763 ID=Msa1201710-mRNA-1:exon:17770;Parent=Msa1201710-mRNA-1
chr8_1 exon 54904871 54904955 54904871 ID=Msa1201710-mRNA-1:exon:17769;Parent=Msa1201710-mRNA-1
chr8_1 five_prime_UTR 54904871 54904955 54904871 ID=Msa1201710-mRNA-1:five_prime_utr;Parent=Msa1201710-mRNA-1
chr8_1 five_prime_UTR 54902171 54902190 54902171 ID=Msa1201710-mRNA-1:five_prime_utr;Parent=Msa1201710-mRNA-1
chr8_1 CDS 54901763 54902170 54901763 ID=Msa1201710-mRNA-1:cds;Parent=Msa1201710-mRNA-1
chr8_1 CDS 54899660 54900541 54899660 ID=Msa1201710-mRNA-1:cds;Parent=Msa1201710-mRNA-1
chr8_1 three_prime_UTR 54899250 54899659 54899250 ID=Msa1201710-mRNA-1:three_prime_utr;Parent=Msa1201710-mRNA-1
Gene Sequence

>Msa1201710

ATGATCATAAATGTGAGAGATTCTAAGATGGTGCAACCATCAGAGGAGGTTGCACGACAGAGGGTGTGGATCTCCAATATTGATTTGAAGACGCCAAATGTGCACACGCCCAGCGTTTACTTCTATAGAACCAACACCATTTCCAAATTCTTCGACGCCAAGATTATGAAGAAAGCTCTCAGCAAGGTGCTTGTCTCATTCTATCCAATGGCAGGTCGTTTTTGTTACGACAAAGAGGACCGAGTGGAGATTGACTGCGACGGTCAAGGGGTGCTCTTTGTTGAAGCTGACACTGACTCATTCATAGATGATTTTGGTGACTTTGCTCCCACATTGCACTTGTGCAAACTTATTCCCATTGTTGATTACTCGCACGGAATTGGAACGTATCCCCTCCTAGTGTTGCAGGTAACATACTTCAAATGTGGAGGAGTCTCACTAGGTGTTGGGATGCACCATTATCTAGCGGATGGAGCTTCTGGTATTCACTTCATCAATACATGGTCAGATGTAACTCGCGGACTAGATGCTTCCATCCCACCATTTATTGATCGGACACTACTTCGTGCCCGTGATCCACCACAACCCATTTTTGATCACGTTGAATTCAAATCTTCACCATCCATGAAGATTCCACAACAGCCCCCTGGCTCAGAGAATGTAACAAGATCGATTTACAAATTGTCTCACGAACAACTCAACAAGTTGAAAGCTAAGTCCAAAGAAGTTGGCAACACAATCAACTACACCACTTATGAGATGTTAGCTGGTCATGTTTGGAGAAGTGTCTGCAAAGCAAGATCACTTCCCGATGATCAAGAAACCAAATTGTATATCCCAACAGATGGAAGATCAAGGTTGCAACCTCCACTTCCATCGGGTTACTTCGGCAATGTGATATTCTCAACCGCACCTATAGCTCTAGCAAGTGATCTCATGTCAAAACCAACATGGTATGCTGTAAGCAGAATTCACAATGCATTGTTGCGAATGGACGATGAATACATGAAATCTGCTATTGATTATCTAGAGTTACAACATGATATAACAACTATTTTCCGCAACGCTAATGTTAAGTGTCCAAATCTTGCGATCGTTAGTTGGGCAAAGTTTCCAATCTATGATGCTGATTTTGGTTGGGGAAGGCCAATTTTCATGGGACCTGGGGCTGATTGTGATGGACTGTCTTTTATAATTCCAAGCTCAACAAATGATGGGAGTTTATCTCTGGTAATTTCTCTTCAACATGAGCACATGGAAGTGTTTAAGGAATTGGTGTATGATATTTGA
Protein sequence

>Msa1201710

MIINVRDSKMVQPSEEVARQRVWISNIDLKTPNVHTPSVYFYRTNTISKFFDAKIMKKALSKVLVSFYPMAGRFCYDKEDRVEIDCDGQGVLFVEADTDSFIDDFGDFAPTLHLCKLIPIVDYSHGIGTYPLLVLQVTYFKCGGVSLGVGMHHYLADGASGIHFINTWSDVTRGLDASIPPFIDRTLLRARDPPQPIFDHVEFKSSPSMKIPQQPPGSENVTRSIYKLSHEQLNKLKAKSKEVGNTINYTTYEMLAGHVWRSVCKARSLPDDQETKLYIPTDGRSRLQPPLPSGYFGNVIFSTAPIALASDLMSKPTWYAVSRIHNALLRMDDEYMKSAIDYLELQHDITTIFRNANVKCPNLAIVSWAKFPIYDADFGWGRPIFMGPGADCDGLSFIIPSSTNDGSLSLVISLQHEHMEVFKELVYDI*