AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1157680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157680 MtrunA17_Chr7g0252041 96.509 487 3 6 1 485 1 475 0.0 939
Msa1157680 MtrunA17_Chr3g0131691 67.958 284 60 8 215 484 217 483 1.97e-119 358
Msa1157680 MtrunA17_Chr3g0141091 44.724 199 82 5 286 483 163 334 5.86e-40 147
Msa1157680 MtrunA17_Chr5g0411541 44.878 205 86 5 283 483 141 322 1.12e-37 140
Msa1157680 MtrunA17_Chr1g0211081 32.283 254 136 6 242 477 278 513 3.82e-31 126
Msa1157680 MtrunA17_Chr3g0089131 67.241 58 19 0 401 458 5 62 5.70e-21 87.4
Msa1157680 MtrunA17_Chr8g0365711 29.787 188 123 3 289 476 237 415 1.22e-18 88.2
Msa1157680 MtrunA17_Chr2g0298751 33.163 196 118 6 287 475 43 232 2.02e-18 84.7
Msa1157680 MtrunA17_Chr1g0185621 34.463 177 104 5 286 458 465 633 2.34e-18 88.2
Msa1157680 MtrunA17_Chr3g0135471 69.767 43 13 0 416 458 1 43 3.08e-15 70.5
Msa1157680 MtrunA17_Chr5g0400671 29.412 187 110 5 296 476 154 324 1.34e-14 74.7
Msa1157680 MtrunA17_Chr5g0400661 26.263 198 135 4 289 476 138 334 1.84e-14 74.3
Msa1157680 MtrunA17_Chr2g0318461 67.442 43 14 0 416 458 1 43 2.35e-14 67.8
Msa1157680 MtrunA17_Chr4g0002801 29.787 188 112 7 298 476 154 330 3.79e-14 73.6
Msa1157680 MtrunA17_Chr2g0280161 28.931 159 98 3 298 454 179 324 6.89e-14 72.8
Msa1157680 MtrunA17_Chr4g0052841 25.510 196 133 4 287 477 283 470 7.95e-14 73.6
Msa1157680 MtrunA17_Chr2g0320291 28.758 153 94 1 284 436 121 258 7.96e-14 72.4
Msa1157680 MtrunA17_Chr8g0346161 57.895 57 24 0 294 350 289 345 8.15e-14 73.6
Msa1157680 MtrunA17_Chr4g0028071 51.562 64 31 0 289 352 142 205 9.80e-14 72.4
Msa1157680 MtrunA17_Chr7g0275821 45.977 87 44 1 294 377 250 336 1.05e-13 72.8
Msa1157680 MtrunA17_Chr8g0346151 60.000 55 22 0 294 348 277 331 1.45e-13 72.8
Msa1157680 MtrunA17_Chr4g0049331 26.540 211 121 6 273 467 107 299 3.02e-13 70.5
Msa1157680 MtrunA17_Chr3g0089121 50.000 80 29 2 325 402 1 71 3.29e-13 65.9
Msa1157680 MtrunA17_Chr4g0052821 27.551 196 125 5 289 477 283 468 3.72e-13 71.6
Msa1157680 MtrunA17_Chr8g0366751 33.133 166 96 4 294 452 460 617 4.65e-13 71.6
Msa1157680 MtrunA17_Chr4g0002781 28.856 201 123 8 283 476 162 349 5.15e-13 70.5
Msa1157680 MtrunA17_Chr7g0260841 42.045 88 44 1 271 351 323 410 1.17e-12 70.1
Msa1157680 MtrunA17_Chr4g0033391 28.293 205 128 5 271 474 125 311 1.39e-12 68.9
Msa1157680 MtrunA17_Chr5g0411341 29.231 195 119 5 294 480 491 674 2.05e-12 69.7
Msa1157680 MtrunA17_Chr4g0054571 28.169 142 97 2 298 439 152 288 8.38e-12 66.2
Msa1157680 MtrunA17_Chr5g0400621 30.189 159 97 4 297 454 158 303 1.00e-11 66.2
Msa1157680 MtrunA17_Chr7g0225901 27.461 193 111 5 271 454 62 234 1.31e-11 64.7
Msa1157680 MtrunA17_Chr8g0336681 26.752 157 110 3 298 454 158 309 1.57e-11 65.9
Msa1157680 MtrunA17_Chr2g0307131 27.184 206 126 6 271 471 156 342 2.18e-11 65.5
Msa1157680 MtrunA17_Chr3g0089111 42.982 114 52 5 224 325 113 225 2.76e-11 63.5
Msa1157680 MtrunA17_Chr4g0033291 27.273 220 139 6 257 474 119 319 4.20e-11 64.3
Msa1157680 MtrunA17_Chr6g0468461 37.634 93 56 2 286 377 162 253 4.64e-11 64.3
Msa1157680 MtrunA17_Chr2g0333621 25.248 202 134 4 282 477 122 312 4.81e-11 63.9
Msa1157680 MtrunA17_Chr5g0404921 61.682 107 18 1 53 159 1 84 6.11e-11 59.3
Msa1157680 MtrunA17_Chr0c01g0489461 28.571 217 116 9 265 448 157 367 7.27e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157680 AT3G26744.1 54.822 394 134 12 122 484 113 493 9.39e-117 352
Msa1157680 AT3G26744.4 54.822 394 134 12 122 484 113 493 9.39e-117 352
Msa1157680 AT3G26744.2 54.822 394 134 12 122 484 113 493 9.39e-117 352
Msa1157680 AT1G12860.1 56.712 365 112 9 131 484 120 449 6.79e-113 341
Msa1157680 AT3G26744.6 53.804 368 126 12 122 458 113 467 3.15e-100 309
Msa1157680 AT1G12860.2 55.389 334 113 9 131 458 120 423 3.08e-96 297
Msa1157680 AT5G65640.1 44.175 206 95 4 281 483 160 348 7.86e-38 142
Msa1157680 AT5G10570.1 42.927 205 87 4 281 483 136 312 1.87e-33 129
Msa1157680 AT2G16910.1 40.102 197 99 6 295 477 313 504 5.50e-31 126
Msa1157680 AT5G65640.2 70.270 74 19 1 281 351 160 233 1.89e-21 94.7
Msa1157680 AT1G12860.3 38.614 202 96 7 131 327 120 298 2.12e-19 89.4
Msa1157680 AT5G57150.1 32.240 183 115 4 294 473 52 228 1.46e-17 82.8
Msa1157680 AT3G26744.5 36.441 236 108 11 122 326 113 337 8.16e-17 82.4
Msa1157680 AT4G29930.2 30.323 155 88 3 295 449 53 187 3.08e-16 78.2
Msa1157680 AT5G57150.3 33.125 160 98 4 294 450 53 206 8.25e-16 77.0
Msa1157680 AT4G29930.5 30.323 155 88 3 295 449 53 187 8.76e-16 77.0
Msa1157680 AT5G57150.2 33.333 159 97 4 294 449 53 205 1.14e-15 76.6
Msa1157680 AT5G57150.5 33.333 159 97 4 294 449 52 204 1.26e-15 76.6
Msa1157680 AT4G29930.6 30.323 155 91 4 295 449 53 190 3.16e-15 75.5
Msa1157680 AT5G57150.4 33.333 159 97 4 294 449 53 205 7.77e-15 75.1
Msa1157680 AT2G46510.1 46.914 81 35 1 279 351 370 450 8.27e-15 77.4
Msa1157680 AT2G28160.1 38.462 104 51 2 249 352 97 187 1.01e-14 75.5
Msa1157680 AT2G28160.2 38.462 104 51 2 249 352 97 187 1.17e-14 75.1
Msa1157680 AT4G29930.4 47.761 67 35 0 295 361 53 119 1.83e-14 72.0
Msa1157680 AT4G09820.1 33.333 153 67 4 289 438 353 473 2.19e-14 75.9
Msa1157680 AT4G29930.1 47.761 67 35 0 295 361 53 119 3.82e-14 72.8
Msa1157680 AT4G29930.3 47.059 68 36 0 294 361 52 119 5.44e-14 72.4
Msa1157680 AT4G29930.7 47.059 68 36 0 294 361 52 119 5.44e-14 72.4
Msa1157680 AT1G01260.1 41.176 119 53 3 247 360 396 502 5.69e-14 74.7
Msa1157680 AT1G01260.2 41.176 119 53 3 247 360 396 502 5.69e-14 74.7
Msa1157680 AT1G01260.3 41.176 119 53 3 247 360 396 502 5.69e-14 74.7
Msa1157680 AT4G17880.1 30.159 189 114 6 294 480 414 586 2.04e-13 73.2
Msa1157680 AT5G46760.1 31.707 164 94 5 294 452 413 563 4.10e-13 72.0
Msa1157680 AT1G32640.1 29.744 195 108 6 294 480 450 623 5.97e-13 71.6
Msa1157680 AT4G00870.1 47.761 67 33 1 289 353 240 306 2.54e-12 68.9
Msa1157680 AT1G10610.3 41.379 87 46 1 272 353 138 224 3.69e-12 68.2
Msa1157680 AT2G22760.2 23.669 169 118 4 287 454 110 268 4.04e-12 67.4
Msa1157680 AT1G10610.2 41.379 87 46 1 272 353 205 291 5.62e-12 67.8
Msa1157680 AT5G46830.1 31.250 192 96 8 294 471 341 510 6.21e-12 68.2
Msa1157680 AT1G10610.1 41.379 87 46 1 272 353 235 321 7.85e-12 67.8
Msa1157680 AT2G22760.1 23.669 169 118 4 287 454 110 268 1.24e-11 65.9
Msa1157680 AT4G16430.1 35.897 117 55 3 242 351 272 375 2.29e-11 66.2
Msa1157680 AT2G22770.1 26.752 157 110 3 287 439 123 278 4.30e-11 64.7
Msa1157680 AT2G22750.5 27.273 143 97 2 297 439 151 286 7.01e-11 63.9
Msa1157680 AT2G22750.3 27.273 143 97 2 297 439 155 290 8.32e-11 63.9
Msa1157680 AT2G22750.4 27.273 143 97 2 297 439 155 290 8.49e-11 63.9

Find 159 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCATTTCAAATGGGTTAT+TGG 0.117688 7_4:-46745208 None:intergenic
GTTTGAAAATGGATTCTTTA+TGG 0.140965 7_4:+46745230 Msa1157680:CDS
GAATGATGAAGGAGAGAAAA+AGG 0.194051 7_4:-46744706 None:intergenic
TTTGAAATGGGGTTTGAAAA+TGG 0.212995 7_4:+46745219 Msa1157680:CDS
AATCTATGGTGTTTGTGTTT+TGG 0.283895 7_4:-46745122 None:intergenic
TCAGGTTCGGGTTGTGGTTC+GGG 0.284310 7_4:-46745006 None:intergenic
TTTGAAAATGGATTCTTTAT+GGG 0.287664 7_4:+46745231 Msa1157680:CDS
CTACGGTTAGTACCTCTATA+AGG 0.292591 7_4:-46747272 None:intergenic
ATCAGGTTCGGGTTGTGGTT+CGG 0.308632 7_4:-46745007 None:intergenic
TTGTGTTTAGGTTCGGAGTT+AGG 0.321519 7_4:-46744919 None:intergenic
GTTGTTGTTGTTATCAGGTT+CGG 0.325642 7_4:-46745019 None:intergenic
ACCAATAACCCATTTGAAAT+GGG 0.328953 7_4:+46745207 Msa1157680:CDS
TCAGCCATCAAATTCTTTGC+AGG 0.331079 7_4:-46745687 None:intergenic
TACCAATAACCCATTTGAAA+TGG 0.336052 7_4:+46745206 Msa1157680:CDS
TGGATTTGAAATTGAATCTA+TGG 0.348162 7_4:-46745136 None:intergenic
AGAGAAAGGTGGAGAAGAGC+TGG 0.362560 7_4:+46745517 Msa1157680:CDS
GCTATCTACCATGAGGGCTT+TGG 0.366010 7_4:+46746865 Msa1157680:CDS
TTGTTGTTGTTATCAGGTTC+GGG 0.372267 7_4:-46745018 None:intergenic
TCAAATGGGACTGTTGTTAC+TGG 0.376369 7_4:+46745630 Msa1157680:CDS
AACAAGAATCACCTTCTTCA+TGG 0.390694 7_4:+46744890 Msa1157680:CDS
TACAGGTGGAAGTTAGAGTA+AGG 0.391657 7_4:+46746789 Msa1157680:intron
TAAGCTATTCTATCTGATCT+TGG 0.393629 7_4:-46747363 None:intergenic
AGGGACCCACCCATGAAAAC+AGG 0.394342 7_4:-46745276 None:intergenic
TTGTTATCAGGTTCGGGTTG+TGG 0.401185 7_4:-46745012 None:intergenic
TGTGGTTCGGGTTTGAAGAA+AGG 0.402846 7_4:-46744994 None:intergenic
AATGATTTGAATAATTCAAA+TGG 0.403338 7_4:+46745615 Msa1157680:CDS
CGCTGTTTCAGAAGCGTCGT+GGG 0.407593 7_4:+46745451 Msa1157680:CDS
GCTGTTATCAGTTGTTTCAA+TGG 0.414184 7_4:+46746914 Msa1157680:CDS
TTTATCTTGTGTGTGAATAA+AGG 0.420835 7_4:-46744661 None:intergenic
GTGGTTGTTGTGTTTAGGTT+CGG 0.421630 7_4:-46744926 None:intergenic
TGTTCGTGGTTGTTGTGTTT+AGG 0.423157 7_4:-46744931 None:intergenic
TGATGATGTTGTTGTGGTTG+TGG 0.425371 7_4:-46745393 None:intergenic
ATGAACTTGTTGAGGTGGTA+AGG 0.429477 7_4:-46744827 None:intergenic
TAATAATCTTCATAATGAAC+TGG 0.430336 7_4:+46746418 Msa1157680:CDS
GAAGGTTGCAGCAGTGAGCC+AGG 0.431678 7_4:-46746452 None:intergenic
GCTTCCTGCAAAGAATTTGA+TGG 0.433280 7_4:+46745683 Msa1157680:CDS
CTTCTTGTTCCTGCTAGTAA+AGG 0.443704 7_4:+46747326 Msa1157680:three_prime_UTR
CAGCACTGCTTTAATTTGCT+CGG 0.447013 7_4:-46747192 None:intergenic
TAGATCCTCTTTGACTCGAC+AGG 0.449537 7_4:-46746522 None:intergenic
GTGGTTCGGGTTTGAAGAAA+GGG 0.450268 7_4:-46744993 None:intergenic
AGCACTGCTTTAATTTGCTC+GGG 0.451779 7_4:-46747191 None:intergenic
GCAATAGCTATTGCTATGGC+TGG 0.459874 7_4:+46744961 Msa1157680:CDS
TATCATTGAGTTTCTTCCTC+CGG 0.461791 7_4:-46745716 None:intergenic
CCTTGGATTGGATGTTCAGC+AGG 0.462769 7_4:+46746892 Msa1157680:CDS
GATAGAATAGCTTAATCTGT+AGG 0.462905 7_4:+46747372 Msa1157680:three_prime_UTR
ATGATAGGTTGTATATGCTT+AGG 0.465770 7_4:+46745733 Msa1157680:CDS
GGCTTTGGATAACCTTGGAT+TGG 0.469562 7_4:+46746880 Msa1157680:CDS
TTCCCCACGGTCTCCAACCT+CGG 0.472317 7_4:-46745486 None:intergenic
GAGAAGAGCTGGGAAGAAGA+AGG 0.472684 7_4:+46745528 Msa1157680:CDS
AATTATGATTCTGATGAGAA+TGG 0.474232 7_4:+46745591 Msa1157680:CDS
GGCGTTGGAGATTCCGAGGT+TGG 0.477216 7_4:+46745473 Msa1157680:CDS
AGAGAAAAGTGTGAGGGAAG+AGG 0.478703 7_4:-46744769 None:intergenic
GCAGCAATGCAGAGAAGGCC+AGG 0.479876 7_4:+46747160 Msa1157680:intron
TCGGTGGAGTGGGTGTCAAC+GGG 0.480196 7_4:-46746493 None:intergenic
TTTGCTCGGGGAGTACATCC+TGG 0.485199 7_4:-46747178 None:intergenic
ATGATTTGAATAATTCAAAT+GGG 0.485439 7_4:+46745616 Msa1157680:CDS
GCAAATTAAAGCAGTGCTGT+TGG 0.486197 7_4:+46747196 Msa1157680:CDS
CATGAGAAAATTGTCTGGTA+AGG 0.488924 7_4:-46745097 None:intergenic
TTTGGGGCTTAGCAAGTCAC+CGG 0.489029 7_4:-46746549 None:intergenic
TACGGTTAGTACCTCTATAA+GGG 0.489290 7_4:-46747271 None:intergenic
TTTCAAACCCCATTTCAAAT+GGG 0.490689 7_4:-46745215 None:intergenic
CTATTGCAATGTCTTGTTCG+TGG 0.492928 7_4:-46744945 None:intergenic
ACAAAACATATGAATGTTGA+CGG 0.497241 7_4:-46746822 None:intergenic
TTGGATTCAGCGGGCTACCA+TGG 0.497757 7_4:+46747215 Msa1157680:CDS
TCAGAAGCGTCGTGGGGCGT+TGG 0.498023 7_4:+46745458 Msa1157680:CDS
CGCTTCTGAAACAGCGTCGT+GGG 0.499455 7_4:-46745444 None:intergenic
GTCGGTGGAGTGGGTGTCAA+CGG 0.499586 7_4:-46746494 None:intergenic
ATGAGGGCTTTGGATAACCT+TGG 0.500549 7_4:+46746875 Msa1157680:CDS
AGGAAACTCAGAAGCTGAAA+GGG 0.502922 7_4:-46745295 None:intergenic
GAGAAAGGTGGAGAAGAGCT+GGG 0.504559 7_4:+46745518 Msa1157680:CDS
TGTTGTTGTGGTTCAGTCCA+AGG 0.506094 7_4:-46744865 None:intergenic
ATGGACAGGGCTTCAATACT+CGG 0.509966 7_4:+46746356 Msa1157680:CDS
ATCTGTAGGGTGGAGGAGAT+AGG 0.510503 7_4:+46747386 Msa1157680:three_prime_UTR
ATAAAATGCTACCCTTATAG+AGG 0.513364 7_4:+46747260 Msa1157680:three_prime_UTR
GAAGCACTGAAAGGTGGTAC+TGG 0.513909 7_4:-46745342 None:intergenic
GGAGGAAGAAACTCAATGAT+AGG 0.514773 7_4:+46745718 Msa1157680:CDS
TAGTAAAGGTCTGTGTCTCC+AGG 0.517762 7_4:+46747340 Msa1157680:three_prime_UTR
AGCTGGGAAGAAGAAGGAAG+TGG 0.518800 7_4:+46745534 Msa1157680:CDS
TCTCTTCTTCTTGTTCCCCA+CGG 0.521728 7_4:-46745499 None:intergenic
TGGTGCATGAGAAAATTGTC+TGG 0.522663 7_4:-46745102 None:intergenic
ATTATGATTCTGATGAGAAT+GGG 0.525864 7_4:+46745592 Msa1157680:CDS
ATTTGATGGCTGAGAGGCGC+CGG 0.526012 7_4:+46745697 Msa1157680:CDS
CAGGGAAGAGTCGGTGGAGT+GGG 0.527264 7_4:-46746503 None:intergenic
GTCAAAGAGGATCTATATCC+CGG 0.532043 7_4:+46746530 Msa1157680:CDS
GAGGAAACTCAGAAGCTGAA+AGG 0.532923 7_4:-46745296 None:intergenic
TCAGAAGGGGAAGAAGAAGA+AGG 0.533310 7_4:+46745659 Msa1157680:CDS
TGAACTTGTTGAGGTGGTAA+GGG 0.534290 7_4:-46744826 None:intergenic
ATAATACTCTCACTATACCT+TGG 0.539865 7_4:+46744848 Msa1157680:CDS
ACAGGTGGAAGTTAGAGTAA+GGG 0.540261 7_4:+46746790 Msa1157680:intron
AGCAGTGCTGTTGGATTCAG+CGG 0.541017 7_4:+46747205 Msa1157680:CDS
CAGAAGGGGAAGAAGAAGAA+GGG 0.544979 7_4:+46745660 Msa1157680:CDS
TTGTGTGTGAATAAAGGAAG+AGG 0.545426 7_4:-46744655 None:intergenic
GAAGAAGAAGGAAGTGGTGG+TGG 0.545973 7_4:+46745540 Msa1157680:CDS
ATAGAATAGCTTAATCTGTA+GGG 0.546836 7_4:+46747373 Msa1157680:three_prime_UTR
GTGGAAGTTAGAGTAAGGGA+AGG 0.547671 7_4:+46746794 Msa1157680:CDS
TCTTAGCAGCAATGCAGAGA+AGG 0.548391 7_4:+46747155 Msa1157680:intron
GATTCCGAGGTTGGAGACCG+TGG 0.550901 7_4:+46745482 Msa1157680:CDS
CCAATAACCCATTTGAAATG+GGG 0.552722 7_4:+46745208 Msa1157680:CDS
AGATGCAGTTGACTACTTGA+AGG 0.553444 7_4:+46746379 Msa1157680:CDS
ACGCTGTTTCAGAAGCGTCG+TGG 0.560372 7_4:+46745450 Msa1157680:CDS
TGAAAGCTTGCACTTGCAGA+AGG 0.560535 7_4:-46746470 None:intergenic
CATTGCAATAGCTATTGCTA+TGG 0.561250 7_4:+46744957 Msa1157680:CDS
AAGGTTATCCAAAGCCCTCA+TGG 0.562752 7_4:-46746873 None:intergenic
TTTAGGTTCGGAGTTAGGTG+TGG 0.567779 7_4:-46744914 None:intergenic
TGATGATGATGATGTTGTTG+TGG 0.568352 7_4:-46745399 None:intergenic
ATTCCGAGGTTGGAGACCGT+GGG 0.568857 7_4:+46745483 Msa1157680:CDS
TGTTACTGGTGGAGATCAGA+AGG 0.571281 7_4:+46745644 Msa1157680:CDS
TGGAAGTTAGAGTAAGGGAA+GGG 0.572558 7_4:+46746795 Msa1157680:CDS
ACAGCAAGCTACAGCAGCTA+CGG 0.573063 7_4:-46747289 None:intergenic
GAGAGACACTACACAACACT+TGG 0.577753 7_4:+46744627 Msa1157680:five_prime_UTR
TGTGGTTGAGCTAGCTCAAG+AGG 0.578961 7_4:-46745375 None:intergenic
ATGAGAAAATTGTCTGGTAA+GGG 0.579342 7_4:-46745096 None:intergenic
GAACAAGAAGAAGAGAAAGG+TGG 0.581110 7_4:+46745506 Msa1157680:CDS
TGGGAAGAAGAAGGAAGTGG+TGG 0.581705 7_4:+46745537 Msa1157680:CDS
TTAGGTGTGGACCATGAAGA+AGG 0.581820 7_4:-46744901 None:intergenic
GTATTATGAACTTGTTGAGG+TGG 0.581897 7_4:-46744832 None:intergenic
AGACACAGACCTTTACTAGC+AGG 0.582495 7_4:-46747335 None:intergenic
TTGTTGTGAAAGAAAGAGTG+TGG 0.583509 7_4:-46745156 None:intergenic
TATTCTATCTGATCTTGGCC+TGG 0.585085 7_4:-46747358 None:intergenic
TAGCTTAATCTGTAGGGTGG+AGG 0.585513 7_4:+46747379 Msa1157680:three_prime_UTR
TCTTCCCTGTCGAGTCAAAG+AGG 0.586826 7_4:+46746517 Msa1157680:CDS
GGGACCCACCCATGAAAACA+GGG 0.591270 7_4:-46745275 None:intergenic
AGAAGGGGAAGAAGAAGAAG+GGG 0.595564 7_4:+46745661 Msa1157680:CDS
AATGGGACTGTTGTTACTGG+TGG 0.595592 7_4:+46745633 Msa1157680:CDS
TTGACTCGACAGGGAAGAGT+CGG 0.596564 7_4:-46746512 None:intergenic
TGATGGCTGAGAGGCGCCGG+AGG 0.599553 7_4:+46745700 Msa1157680:CDS
ATTTGTGTGAAGAATGATGA+AGG 0.611302 7_4:-46744717 None:intergenic
ACTTGAAGGAGCTGCTGCAG+CGG 0.611585 7_4:+46746393 Msa1157680:CDS
ACTCGACAGGGAAGAGTCGG+TGG 0.612573 7_4:-46746509 None:intergenic
CAAAGAATTTGATGGCTGAG+AGG 0.613701 7_4:+46745691 Msa1157680:CDS
ACAGGGAAGAGTCGGTGGAG+TGG 0.614037 7_4:-46746504 None:intergenic
ATGGTAGATAGCAAAAGTCC+TGG 0.618329 7_4:-46746854 None:intergenic
ATAGAAAACGAAGCACTGAA+AGG 0.618637 7_4:-46745351 None:intergenic
GAACTGGAATCAACTCCACC+TGG 0.619030 7_4:+46746434 Msa1157680:CDS
GGGGAACAAGAAGAAGAGAA+AGG 0.621823 7_4:+46745503 Msa1157680:CDS
ACTTCATTCAATTCAAACCA+TGG 0.624434 7_4:-46747232 None:intergenic
AGAAGAGAAGAGAAGCAGCA+AGG 0.628506 7_4:+46744587 Msa1157680:five_prime_UTR
GTTACTGGTGGAGATCAGAA+GGG 0.630933 7_4:+46745645 Msa1157680:CDS
ATTAGACGTGTTCAGAGCTG+AGG 0.631196 7_4:+46746943 Msa1157680:CDS
TGTTGTGCCTAAAATTAGCA+AGG 0.631769 7_4:+46745758 Msa1157680:CDS
GAATAGCTTAATCTGTAGGG+TGG 0.631855 7_4:+46747376 Msa1157680:three_prime_UTR
TTGGGGCTTAGCAAGTCACC+GGG 0.636110 7_4:-46746548 None:intergenic
GTGGGGCGTTGGAGATTCCG+AGG 0.636781 7_4:+46745469 Msa1157680:CDS
GAAAACGAAGCACTGAAAGG+TGG 0.640228 7_4:-46745348 None:intergenic
CCTGCTGAACATCCAATCCA+AGG 0.640256 7_4:-46746892 None:intergenic
ACGCTTCTGAAACAGCGTCG+TGG 0.647570 7_4:-46745445 None:intergenic
GCAGTGCTGTTGGATTCAGC+GGG 0.652187 7_4:+46747206 Msa1157680:CDS
AGATCCTCTTTGACTCGACA+GGG 0.653087 7_4:-46746521 None:intergenic
TTGTTGAATTTATGATTACG+TGG 0.661297 7_4:+46747454 Msa1157680:three_prime_UTR
GCACTGCTTTAATTTGCTCG+GGG 0.667619 7_4:-46747190 None:intergenic
TTACTGGTGGAGATCAGAAG+GGG 0.669179 7_4:+46745646 Msa1157680:CDS
GGTTGCAGCAGTGAGCCAGG+TGG 0.670958 7_4:-46746449 None:intergenic
GCTGTTTCAGAAGCGTCGTG+GGG 0.673826 7_4:+46745452 Msa1157680:CDS
TTGAATTTATGATTACGTGG+TGG 0.682795 7_4:+46747457 Msa1157680:three_prime_UTR
AGAGTATTATGAACTTGTTG+AGG 0.689686 7_4:-46744835 None:intergenic
TTCCGAGGTTGGAGACCGTG+GGG 0.692226 7_4:+46745484 Msa1157680:CDS
GGACCCACCCATGAAAACAG+GGG 0.693712 7_4:-46745274 None:intergenic
GCAGCATCGAGTTCAAGACT+CGG 0.694688 7_4:-46745318 None:intergenic
GCATCGAGTTCAAGACTCGG+AGG 0.717250 7_4:-46745315 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTACTATTTATTCAA+TGG - chr7_4:46746038-46746057 None:intergenic 10.0%
!!! AATTTCATTTATTTTATAGA+TGG + chr7_4:46746337-46746356 Msa1157680:intron 10.0%
!! AATGATTTGAATAATTCAAA+TGG + chr7_4:46745615-46745634 Msa1157680:CDS 15.0%
!! ATGATTTGAATAATTCAAAT+GGG + chr7_4:46745616-46745635 Msa1157680:CDS 15.0%
!! TTTACAAAATATTGTGAAAT+TGG + chr7_4:46745798-46745817 Msa1157680:intron 15.0%
!!! CATCAAATATTTTTTCTAAA+AGG - chr7_4:46745826-46745845 None:intergenic 15.0%
!!! AAAAATGTTATGTTTTTTGA+AGG - chr7_4:46746070-46746089 None:intergenic 15.0%
!!! TTTGAAAATGGATTCTTTAT+GGG + chr7_4:46745231-46745250 Msa1157680:CDS 20.0%
!!! TCCATTAATGTTTTAAATTG+CGG + chr7_4:46745862-46745881 Msa1157680:intron 20.0%
!! GATTTCTATTATTCAAATCA+AGG - chr7_4:46746098-46746117 None:intergenic 20.0%
!! TTGAATAATAGAAATCATGA+AGG + chr7_4:46746102-46746121 Msa1157680:intron 20.0%
!! TGAATAATAGAAATCATGAA+GGG + chr7_4:46746103-46746122 Msa1157680:intron 20.0%
!!! ACTAGTTTTTTGTATTTTGT+TGG + chr7_4:46746141-46746160 Msa1157680:intron 20.0%
!!! TTGCTTTTGTAATTTTGTTT+GGG + chr7_4:46746203-46746222 Msa1157680:intron 20.0%
!!! ATTTATTTTATAGATGGACA+GGG + chr7_4:46746343-46746362 Msa1157680:intron 20.0%
!! TAATAATCTTCATAATGAAC+TGG + chr7_4:46746418-46746437 Msa1157680:CDS 20.0%
! TTTATCTTGTGTGTGAATAA+AGG - chr7_4:46744664-46744683 None:intergenic 25.0%
!! TGGATTTGAAATTGAATCTA+TGG - chr7_4:46745139-46745158 None:intergenic 25.0%
!! GTTTGAAAATGGATTCTTTA+TGG + chr7_4:46745230-46745249 Msa1157680:CDS 25.0%
! AATTATGATTCTGATGAGAA+TGG + chr7_4:46745591-46745610 Msa1157680:CDS 25.0%
! ATTATGATTCTGATGAGAAT+GGG + chr7_4:46745592-46745611 Msa1157680:CDS 25.0%
!! ACCGCAATTTAAAACATTAA+TGG - chr7_4:46745866-46745885 None:intergenic 25.0%
! CAAAAAATTGTTGTCAAATG+CGG + chr7_4:46745916-46745935 Msa1157680:intron 25.0%
! TCAATGGCATTTCTAATTAT+AGG - chr7_4:46746022-46746041 None:intergenic 25.0%
! AAATTACAAAAGCAACAAGA+TGG - chr7_4:46746198-46746217 None:intergenic 25.0%
!!! GTTGCTTTTGTAATTTTGTT+TGG + chr7_4:46746202-46746221 Msa1157680:intron 25.0%
!!! TGCTTTTGTAATTTTGTTTG+GGG + chr7_4:46746204-46746223 Msa1157680:intron 25.0%
!! AATGTTGTTGCTTATGTTAT+TGG + chr7_4:46746242-46746261 Msa1157680:intron 25.0%
!!! CATTTATTTTATAGATGGAC+AGG + chr7_4:46746342-46746361 Msa1157680:intron 25.0%
!!! TTCTTGTTTCTGAAATTTAC+AGG + chr7_4:46746772-46746791 Msa1157680:intron 25.0%
! ACAAAACATATGAATGTTGA+CGG - chr7_4:46746825-46746844 None:intergenic 25.0%
! AATGTAAGAAAGGTTTATGA+TGG - chr7_4:46747010-46747029 None:intergenic 25.0%
! CATACAGTAAAATGTAAGAA+AGG - chr7_4:46747020-46747039 None:intergenic 25.0%
!!! ATTTCGAGTTCACTAATTAT+TGG + chr7_4:46747103-46747122 Msa1157680:intron 25.0%
! TTCACTAATTATTGGATTTC+TGG + chr7_4:46747111-46747130 Msa1157680:intron 25.0%
! ATAGAATAGCTTAATCTGTA+GGG + chr7_4:46747373-46747392 Msa1157680:three_prime_UTR 25.0%
! TTGTTGAATTTATGATTACG+TGG + chr7_4:46747454-46747473 Msa1157680:three_prime_UTR 25.0%
AATGATGAAGGAGAGAAAAA+GGG - chr7_4:46744708-46744727 None:intergenic 30.0%
ATTTGTGTGAAGAATGATGA+AGG - chr7_4:46744720-46744739 None:intergenic 30.0%
! CAAAAAAGAGAAAAGTGTGA+GGG - chr7_4:46744778-46744797 None:intergenic 30.0%
! ACAAAAAAGAGAAAAGTGTG+AGG - chr7_4:46744779-46744798 None:intergenic 30.0%
!! AGAGTATTATGAACTTGTTG+AGG - chr7_4:46744838-46744857 None:intergenic 30.0%
ATAATACTCTCACTATACCT+TGG + chr7_4:46744848-46744867 Msa1157680:CDS 30.0%
! AAGTTGTTGTTGTTGTTATC+AGG - chr7_4:46745027-46745046 None:intergenic 30.0%
ATGAGAAAATTGTCTGGTAA+GGG - chr7_4:46745099-46745118 None:intergenic 30.0%
! AATCTATGGTGTTTGTGTTT+TGG - chr7_4:46745125-46745144 None:intergenic 30.0%
TACCAATAACCCATTTGAAA+TGG + chr7_4:46745206-46745225 Msa1157680:CDS 30.0%
! ACCAATAACCCATTTGAAAT+GGG + chr7_4:46745207-46745226 Msa1157680:CDS 30.0%
TTTCAAACCCCATTTCAAAT+GGG - chr7_4:46745218-46745237 None:intergenic 30.0%
! TTTTCAAACCCCATTTCAAA+TGG - chr7_4:46745219-46745238 None:intergenic 30.0%
! TTTGAAATGGGGTTTGAAAA+TGG + chr7_4:46745219-46745238 Msa1157680:CDS 30.0%
ATGATAGGTTGTATATGCTT+AGG + chr7_4:46745733-46745752 Msa1157680:CDS 30.0%
! CCATATACCTTGCTAATTTT+AGG - chr7_4:46745768-46745787 None:intergenic 30.0%
CCTAAAATTAGCAAGGTATA+TGG + chr7_4:46745765-46745784 Msa1157680:intron 30.0%
AAATAGAACGTGCTAATGTT+AGG + chr7_4:46746304-46746323 Msa1157680:intron 30.0%
AGGCAAACAAAAATTACCTT+GGG - chr7_4:46746584-46746603 None:intergenic 30.0%
AAGGCAAACAAAAATTACCT+TGG - chr7_4:46746585-46746604 None:intergenic 30.0%
CTTAAAACAACTTCGCATTA+AGG - chr7_4:46746604-46746623 None:intergenic 30.0%
! GTTTGTGACAATAATTTGCA+TGG - chr7_4:46746660-46746679 None:intergenic 30.0%
CATGTTACTGGTATAGATAA+AGG - chr7_4:46746684-46746703 None:intergenic 30.0%
CTTTATCTATACCAGTAACA+TGG + chr7_4:46746682-46746701 Msa1157680:intron 30.0%
ACATGGCAAATAACTGAATA+AGG + chr7_4:46746699-46746718 Msa1157680:intron 30.0%
CATGGCAAATAACTGAATAA+GGG + chr7_4:46746700-46746719 Msa1157680:intron 30.0%
GTACGTTGATGCAAATTATT+TGG + chr7_4:46746722-46746741 Msa1157680:intron 30.0%
GTTGATGCAAATTATTTGGA+CGG + chr7_4:46746726-46746745 Msa1157680:intron 30.0%
AATTATTTGGACGGTAATTG+AGG + chr7_4:46746735-46746754 Msa1157680:intron 30.0%
!! TTGTTTCTGAAATTTACAGG+TGG + chr7_4:46746775-46746794 Msa1157680:intron 30.0%
! GATGTTTATATGCCTCTTTT+AGG + chr7_4:46747049-46747068 Msa1157680:intron 30.0%
CACAAAAAACAACCTAAAAG+AGG - chr7_4:46747064-46747083 None:intergenic 30.0%
ACTTCATTCAATTCAAACCA+TGG - chr7_4:46747235-46747254 None:intergenic 30.0%
! TATAAGGGTAGCATTTTATC+AGG - chr7_4:46747259-46747278 None:intergenic 30.0%
ATAAAATGCTACCCTTATAG+AGG + chr7_4:46747260-46747279 Msa1157680:three_prime_UTR 30.0%
TAAGCTATTCTATCTGATCT+TGG - chr7_4:46747366-46747385 None:intergenic 30.0%
GATAGAATAGCTTAATCTGT+AGG + chr7_4:46747372-46747391 Msa1157680:three_prime_UTR 30.0%
TTGAATTTATGATTACGTGG+TGG + chr7_4:46747457-46747476 Msa1157680:three_prime_UTR 30.0%
TTGTGTGTGAATAAAGGAAG+AGG - chr7_4:46744658-46744677 None:intergenic 35.0%
GAATGATGAAGGAGAGAAAA+AGG - chr7_4:46744709-46744728 None:intergenic 35.0%
!!! TCTTTTTTGTCTCTCTGTCA+TGG + chr7_4:46744789-46744808 Msa1157680:exon 35.0%
!! GTATTATGAACTTGTTGAGG+TGG - chr7_4:46744835-46744854 None:intergenic 35.0%
!! GATTCTTGTTGTTGTTGTTG+TGG - chr7_4:46744880-46744899 None:intergenic 35.0%
AACAAGAATCACCTTCTTCA+TGG + chr7_4:46744890-46744909 Msa1157680:CDS 35.0%
CATTGCAATAGCTATTGCTA+TGG + chr7_4:46744957-46744976 Msa1157680:CDS 35.0%
! TTGTTGTTGTTATCAGGTTC+GGG - chr7_4:46745021-46745040 None:intergenic 35.0%
! GTTGTTGTTGTTATCAGGTT+CGG - chr7_4:46745022-46745041 None:intergenic 35.0%
CATGAGAAAATTGTCTGGTA+AGG - chr7_4:46745100-46745119 None:intergenic 35.0%
TTGTTGTGAAAGAAAGAGTG+TGG - chr7_4:46745159-46745178 None:intergenic 35.0%
! CCAATAACCCATTTGAAATG+GGG + chr7_4:46745208-46745227 Msa1157680:CDS 35.0%
! TTCAAATTCCCCTGTTTTCA+TGG + chr7_4:46745266-46745285 Msa1157680:CDS 35.0%
! TCAAATTCCCCTGTTTTCAT+GGG + chr7_4:46745267-46745286 Msa1157680:CDS 35.0%
!! ATAGAAAACGAAGCACTGAA+AGG - chr7_4:46745354-46745373 None:intergenic 35.0%
! TGATGATGATGATGTTGTTG+TGG - chr7_4:46745402-46745421 None:intergenic 35.0%
TATCATTGAGTTTCTTCCTC+CGG - chr7_4:46745719-46745738 None:intergenic 35.0%
TGTTGTGCCTAAAATTAGCA+AGG + chr7_4:46745758-46745777 Msa1157680:CDS 35.0%
! TTTTTATGTGACCGCGATTA+AGG - chr7_4:46745951-46745970 None:intergenic 35.0%
CAAAAATTACCTTGGGAGAT+TGG - chr7_4:46746577-46746596 None:intergenic 35.0%
TCAGTTATTTGCCATGTTAC+TGG - chr7_4:46746696-46746715 None:intergenic 35.0%
!! ACTTTTGCTATCTACCATGA+GGG + chr7_4:46746859-46746878 Msa1157680:CDS 35.0%
! GCTGTTATCAGTTGTTTCAA+TGG + chr7_4:46746914-46746933 Msa1157680:CDS 35.0%
! TGAGGTATTAGTTCTTTCTC+CGG + chr7_4:46746961-46746980 Msa1157680:intron 35.0%
TACGGTTAGTACCTCTATAA+GGG - chr7_4:46747274-46747293 None:intergenic 35.0%
!! TGAACTTGTTGAGGTGGTAA+GGG - chr7_4:46744829-46744848 None:intergenic 40.0%
!! ATGAACTTGTTGAGGTGGTA+AGG - chr7_4:46744830-46744849 None:intergenic 40.0%
! TTGTGTTTAGGTTCGGAGTT+AGG - chr7_4:46744922-46744941 None:intergenic 40.0%
! GTGGTTGTTGTGTTTAGGTT+CGG - chr7_4:46744929-46744948 None:intergenic 40.0%
TGTTCGTGGTTGTTGTGTTT+AGG - chr7_4:46744934-46744953 None:intergenic 40.0%
! CTATTGCAATGTCTTGTTCG+TGG - chr7_4:46744948-46744967 None:intergenic 40.0%
TGGTGCATGAGAAAATTGTC+TGG - chr7_4:46745105-46745124 None:intergenic 40.0%
!! CCCCATTTCAAATGGGTTAT+TGG - chr7_4:46745211-46745230 None:intergenic 40.0%
AGGAAACTCAGAAGCTGAAA+GGG - chr7_4:46745298-46745317 None:intergenic 40.0%
! TGATGATGTTGTTGTGGTTG+TGG - chr7_4:46745396-46745415 None:intergenic 40.0%
GAACAAGAAGAAGAGAAAGG+TGG + chr7_4:46745506-46745525 Msa1157680:CDS 40.0%
TCAAATGGGACTGTTGTTAC+TGG + chr7_4:46745630-46745649 Msa1157680:CDS 40.0%
GCTTCCTGCAAAGAATTTGA+TGG + chr7_4:46745683-46745702 Msa1157680:CDS 40.0%
TCAGCCATCAAATTCTTTGC+AGG - chr7_4:46745690-46745709 None:intergenic 40.0%
! CAAAGAATTTGATGGCTGAG+AGG + chr7_4:46745691-46745710 Msa1157680:CDS 40.0%
GGAGGAAGAAACTCAATGAT+AGG + chr7_4:46745718-46745737 Msa1157680:CDS 40.0%
TTAAATTGCGGTCGCAGTAA+TGG + chr7_4:46745874-46745893 Msa1157680:intron 40.0%
TGTTTGGGGAATCTAGTGTT+TGG + chr7_4:46746218-46746237 Msa1157680:intron 40.0%
GTTTGGGGAATCTAGTGTTT+GGG + chr7_4:46746219-46746238 Msa1157680:intron 40.0%
AGATGCAGTTGACTACTTGA+AGG + chr7_4:46746379-46746398 Msa1157680:CDS 40.0%
GTCAAAGAGGATCTATATCC+CGG + chr7_4:46746530-46746549 Msa1157680:CDS 40.0%
!!! ACCTTGGGAGATTGGTTTTT+GGG - chr7_4:46746569-46746588 None:intergenic 40.0%
!!! TACCTTGGGAGATTGGTTTT+TGG - chr7_4:46746570-46746589 None:intergenic 40.0%
TACAGGTGGAAGTTAGAGTA+AGG + chr7_4:46746789-46746808 Msa1157680:intron 40.0%
ACAGGTGGAAGTTAGAGTAA+GGG + chr7_4:46746790-46746809 Msa1157680:intron 40.0%
TGGAAGTTAGAGTAAGGGAA+GGG + chr7_4:46746795-46746814 Msa1157680:CDS 40.0%
ATGGTAGATAGCAAAAGTCC+TGG - chr7_4:46746857-46746876 None:intergenic 40.0%
!! GACTTTTGCTATCTACCATG+AGG + chr7_4:46746858-46746877 Msa1157680:CDS 40.0%
!! AGCACTGCTTTAATTTGCTC+GGG - chr7_4:46747194-46747213 None:intergenic 40.0%
!! CAGCACTGCTTTAATTTGCT+CGG - chr7_4:46747195-46747214 None:intergenic 40.0%
GCAAATTAAAGCAGTGCTGT+TGG + chr7_4:46747196-46747215 Msa1157680:CDS 40.0%
CTACGGTTAGTACCTCTATA+AGG - chr7_4:46747275-46747294 None:intergenic 40.0%
CTTCTTGTTCCTGCTAGTAA+AGG + chr7_4:46747326-46747345 Msa1157680:three_prime_UTR 40.0%
TATTCTATCTGATCTTGGCC+TGG - chr7_4:46747361-46747380 None:intergenic 40.0%
GAATAGCTTAATCTGTAGGG+TGG + chr7_4:46747376-46747395 Msa1157680:three_prime_UTR 40.0%
AGAAGAGAAGAGAAGCAGCA+AGG + chr7_4:46744587-46744606 Msa1157680:five_prime_UTR 45.0%
GAGAGACACTACACAACACT+TGG + chr7_4:46744627-46744646 Msa1157680:five_prime_UTR 45.0%
! AGAGAAAAGTGTGAGGGAAG+AGG - chr7_4:46744772-46744791 None:intergenic 45.0%
TGTTGTTGTGGTTCAGTCCA+AGG - chr7_4:46744868-46744887 None:intergenic 45.0%
TTAGGTGTGGACCATGAAGA+AGG - chr7_4:46744904-46744923 None:intergenic 45.0%
! TTTAGGTTCGGAGTTAGGTG+TGG - chr7_4:46744917-46744936 None:intergenic 45.0%
GCAATAGCTATTGCTATGGC+TGG + chr7_4:46744961-46744980 Msa1157680:CDS 45.0%
! GTGGTTCGGGTTTGAAGAAA+GGG - chr7_4:46744996-46745015 None:intergenic 45.0%
! TGTGGTTCGGGTTTGAAGAA+AGG - chr7_4:46744997-46745016 None:intergenic 45.0%
!! TTGTTATCAGGTTCGGGTTG+TGG - chr7_4:46745015-46745034 None:intergenic 45.0%
! AATTCCCCTGTTTTCATGGG+TGG + chr7_4:46745270-46745289 Msa1157680:CDS 45.0%
! ATTCCCCTGTTTTCATGGGT+GGG + chr7_4:46745271-46745290 Msa1157680:CDS 45.0%
GAGGAAACTCAGAAGCTGAA+AGG - chr7_4:46745299-46745318 None:intergenic 45.0%
!! GAAAACGAAGCACTGAAAGG+TGG - chr7_4:46745351-46745370 None:intergenic 45.0%
TCTCTTCTTCTTGTTCCCCA+CGG - chr7_4:46745502-46745521 None:intergenic 45.0%
GGGGAACAAGAAGAAGAGAA+AGG + chr7_4:46745503-46745522 Msa1157680:CDS 45.0%
AATGGGACTGTTGTTACTGG+TGG + chr7_4:46745633-46745652 Msa1157680:CDS 45.0%
TGTTACTGGTGGAGATCAGA+AGG + chr7_4:46745644-46745663 Msa1157680:CDS 45.0%
GTTACTGGTGGAGATCAGAA+GGG + chr7_4:46745645-46745664 Msa1157680:CDS 45.0%
TTACTGGTGGAGATCAGAAG+GGG + chr7_4:46745646-46745665 Msa1157680:CDS 45.0%
TCAGAAGGGGAAGAAGAAGA+AGG + chr7_4:46745659-46745678 Msa1157680:CDS 45.0%
CAGAAGGGGAAGAAGAAGAA+GGG + chr7_4:46745660-46745679 Msa1157680:CDS 45.0%
AGAAGGGGAAGAAGAAGAAG+GGG + chr7_4:46745661-46745680 Msa1157680:CDS 45.0%
! GGTTGATGTAGCCTTAATCG+CGG + chr7_4:46745937-46745956 Msa1157680:intron 45.0%
GGCATCACACAAGCATTTCA+AGG - chr7_4:46746177-46746196 None:intergenic 45.0%
ATGGACAGGGCTTCAATACT+CGG + chr7_4:46746356-46746375 Msa1157680:CDS 45.0%
TGAAAGCTTGCACTTGCAGA+AGG - chr7_4:46746473-46746492 None:intergenic 45.0%
! AGATCCTCTTTGACTCGACA+GGG - chr7_4:46746524-46746543 None:intergenic 45.0%
! TAGATCCTCTTTGACTCGAC+AGG - chr7_4:46746525-46746544 None:intergenic 45.0%
!!! CCTTGGGAGATTGGTTTTTG+GGG - chr7_4:46746568-46746587 None:intergenic 45.0%
GTGGAAGTTAGAGTAAGGGA+AGG + chr7_4:46746794-46746813 Msa1157680:CDS 45.0%
! ATGTTTTGTACTCGCAGACC+AGG + chr7_4:46746836-46746855 Msa1157680:CDS 45.0%
AAGGTTATCCAAAGCCCTCA+TGG - chr7_4:46746876-46746895 None:intergenic 45.0%
!! ATGAGGGCTTTGGATAACCT+TGG + chr7_4:46746875-46746894 Msa1157680:CDS 45.0%
!! GGCTTTGGATAACCTTGGAT+TGG + chr7_4:46746880-46746899 Msa1157680:CDS 45.0%
ATTAGACGTGTTCAGAGCTG+AGG + chr7_4:46746943-46746962 Msa1157680:CDS 45.0%
GTTTGAGTGAAGCTTGCAAC+CGG - chr7_4:46746983-46747002 None:intergenic 45.0%
TCTTAGCAGCAATGCAGAGA+AGG + chr7_4:46747155-46747174 Msa1157680:intron 45.0%
!! GCACTGCTTTAATTTGCTCG+GGG - chr7_4:46747193-46747212 None:intergenic 45.0%
AGACACAGACCTTTACTAGC+AGG - chr7_4:46747338-46747357 None:intergenic 45.0%
TAGTAAAGGTCTGTGTCTCC+AGG + chr7_4:46747340-46747359 Msa1157680:three_prime_UTR 45.0%
TAGCTTAATCTGTAGGGTGG+AGG + chr7_4:46747379-46747398 Msa1157680:three_prime_UTR 45.0%
!! ATCAGGTTCGGGTTGTGGTT+CGG - chr7_4:46745010-46745029 None:intergenic 50.0%
! GCAGCATCGAGTTCAAGACT+CGG - chr7_4:46745321-46745340 None:intergenic 50.0%
!! GAAGCACTGAAAGGTGGTAC+TGG - chr7_4:46745345-46745364 None:intergenic 50.0%
TGTGGTTGAGCTAGCTCAAG+AGG - chr7_4:46745378-46745397 None:intergenic 50.0%
AGAGAAAGGTGGAGAAGAGC+TGG + chr7_4:46745517-46745536 Msa1157680:CDS 50.0%
GAGAAAGGTGGAGAAGAGCT+GGG + chr7_4:46745518-46745537 Msa1157680:CDS 50.0%
GAGAAGAGCTGGGAAGAAGA+AGG + chr7_4:46745528-46745547 Msa1157680:CDS 50.0%
AGCTGGGAAGAAGAAGGAAG+TGG + chr7_4:46745534-46745553 Msa1157680:CDS 50.0%
TGGGAAGAAGAAGGAAGTGG+TGG + chr7_4:46745537-46745556 Msa1157680:CDS 50.0%
GAAGAAGAAGGAAGTGGTGG+TGG + chr7_4:46745540-46745559 Msa1157680:CDS 50.0%
GAACTGGAATCAACTCCACC+TGG + chr7_4:46746434-46746453 Msa1157680:CDS 50.0%
! TTGACTCGACAGGGAAGAGT+CGG - chr7_4:46746515-46746534 None:intergenic 50.0%
TCTTCCCTGTCGAGTCAAAG+AGG + chr7_4:46746517-46746536 Msa1157680:CDS 50.0%
! TTTGGGGCTTAGCAAGTCAC+CGG - chr7_4:46746552-46746571 None:intergenic 50.0%
CCCCAAAAACCAATCTCCCA+AGG + chr7_4:46746565-46746584 Msa1157680:CDS 50.0%
GCTATCTACCATGAGGGCTT+TGG + chr7_4:46746865-46746884 Msa1157680:CDS 50.0%
CCTGCTGAACATCCAATCCA+AGG - chr7_4:46746895-46746914 None:intergenic 50.0%
! CCTTGGATTGGATGTTCAGC+AGG + chr7_4:46746892-46746911 Msa1157680:CDS 50.0%
! AGCAGTGCTGTTGGATTCAG+CGG + chr7_4:46747205-46747224 Msa1157680:CDS 50.0%
ACAGCAAGCTACAGCAGCTA+CGG - chr7_4:46747292-46747311 None:intergenic 50.0%
ATCTGTAGGGTGGAGGAGAT+AGG + chr7_4:46747386-46747405 Msa1157680:three_prime_UTR 50.0%
!! TCAGGTTCGGGTTGTGGTTC+GGG - chr7_4:46745009-46745028 None:intergenic 55.0%
GGACCCACCCATGAAAACAG+GGG - chr7_4:46745277-46745296 None:intergenic 55.0%
GGGACCCACCCATGAAAACA+GGG - chr7_4:46745278-46745297 None:intergenic 55.0%
AGGGACCCACCCATGAAAAC+AGG - chr7_4:46745279-46745298 None:intergenic 55.0%
GCATCGAGTTCAAGACTCGG+AGG - chr7_4:46745318-46745337 None:intergenic 55.0%
!! CGCTTCTGAAACAGCGTCGT+GGG - chr7_4:46745447-46745466 None:intergenic 55.0%
!! ACGCTTCTGAAACAGCGTCG+TGG - chr7_4:46745448-46745467 None:intergenic 55.0%
!! ACGCTGTTTCAGAAGCGTCG+TGG + chr7_4:46745450-46745469 Msa1157680:CDS 55.0%
!! CGCTGTTTCAGAAGCGTCGT+GGG + chr7_4:46745451-46745470 Msa1157680:CDS 55.0%
!! GCTGTTTCAGAAGCGTCGTG+GGG + chr7_4:46745452-46745471 Msa1157680:CDS 55.0%
ATTCCGAGGTTGGAGACCGT+GGG + chr7_4:46745483-46745502 Msa1157680:CDS 55.0%
! ATTTGATGGCTGAGAGGCGC+CGG + chr7_4:46745697-46745716 Msa1157680:CDS 55.0%
ACTTGAAGGAGCTGCTGCAG+CGG + chr7_4:46746393-46746412 Msa1157680:CDS 55.0%
TTGGGGCTTAGCAAGTCACC+GGG - chr7_4:46746551-46746570 None:intergenic 55.0%
! TTTGCTCGGGGAGTACATCC+TGG - chr7_4:46747181-46747200 None:intergenic 55.0%
! GCAGTGCTGTTGGATTCAGC+GGG + chr7_4:46747206-46747225 Msa1157680:CDS 55.0%
!! TTGGATTCAGCGGGCTACCA+TGG + chr7_4:46747215-46747234 Msa1157680:CDS 55.0%
! GGCGTTGGAGATTCCGAGGT+TGG + chr7_4:46745473-46745492 Msa1157680:CDS 60.0%
GATTCCGAGGTTGGAGACCG+TGG + chr7_4:46745482-46745501 Msa1157680:CDS 60.0%
TTCCGAGGTTGGAGACCGTG+GGG + chr7_4:46745484-46745503 Msa1157680:CDS 60.0%
TTCCCCACGGTCTCCAACCT+CGG - chr7_4:46745489-46745508 None:intergenic 60.0%
GAAGGTTGCAGCAGTGAGCC+AGG - chr7_4:46746455-46746474 None:intergenic 60.0%
TCGGTGGAGTGGGTGTCAAC+GGG - chr7_4:46746496-46746515 None:intergenic 60.0%
GTCGGTGGAGTGGGTGTCAA+CGG - chr7_4:46746497-46746516 None:intergenic 60.0%
CAGGGAAGAGTCGGTGGAGT+GGG - chr7_4:46746506-46746525 None:intergenic 60.0%
ACAGGGAAGAGTCGGTGGAG+TGG - chr7_4:46746507-46746526 None:intergenic 60.0%
ACTCGACAGGGAAGAGTCGG+TGG - chr7_4:46746512-46746531 None:intergenic 60.0%
GCAGCAATGCAGAGAAGGCC+AGG + chr7_4:46747160-46747179 Msa1157680:intron 60.0%
!! TCAGAAGCGTCGTGGGGCGT+TGG + chr7_4:46745458-46745477 Msa1157680:CDS 65.0%
!! GTGGGGCGTTGGAGATTCCG+AGG + chr7_4:46745469-46745488 Msa1157680:CDS 65.0%
GGTTGCAGCAGTGAGCCAGG+TGG - chr7_4:46746452-46746471 None:intergenic 65.0%
!! TGATGGCTGAGAGGCGCCGG+AGG + chr7_4:46745700-46745719 Msa1157680:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 46744572 46747511 46744572 ID=Msa1157680;Name=Msa1157680
chr7_4 mRNA 46744572 46747511 46744572 ID=Msa1157680-mRNA-1;Parent=Msa1157680;Name=Msa1157680-mRNA-1;_AED=0.12;_eAED=0.12;_QI=236|1|1|1|1|1|4|264|485
chr7_4 exon 46744572 46745779 46744572 ID=Msa1157680-mRNA-1:exon:12258;Parent=Msa1157680-mRNA-1
chr7_4 exon 46746356 46746586 46746356 ID=Msa1157680-mRNA-1:exon:12259;Parent=Msa1157680-mRNA-1
chr7_4 exon 46746794 46746964 46746794 ID=Msa1157680-mRNA-1:exon:12260;Parent=Msa1157680-mRNA-1
chr7_4 exon 46747164 46747511 46747164 ID=Msa1157680-mRNA-1:exon:12261;Parent=Msa1157680-mRNA-1
chr7_4 five_prime_UTR 46744572 46744807 46744572 ID=Msa1157680-mRNA-1:five_prime_utr;Parent=Msa1157680-mRNA-1
chr7_4 CDS 46744808 46745779 46744808 ID=Msa1157680-mRNA-1:cds;Parent=Msa1157680-mRNA-1
chr7_4 CDS 46746356 46746586 46746356 ID=Msa1157680-mRNA-1:cds;Parent=Msa1157680-mRNA-1
chr7_4 CDS 46746794 46746964 46746794 ID=Msa1157680-mRNA-1:cds;Parent=Msa1157680-mRNA-1
chr7_4 CDS 46747164 46747247 46747164 ID=Msa1157680-mRNA-1:cds;Parent=Msa1157680-mRNA-1
chr7_4 three_prime_UTR 46747248 46747511 46747248 ID=Msa1157680-mRNA-1:three_prime_utr;Parent=Msa1157680-mRNA-1
Gene Sequence

>Msa1157680

ATGGAGAGATACACGTTACCCTTACCACCTCAACAAGTTCATAATACTCTCACTATACCTTGGACTGAACCACAACAACAACAACAAGAATCACCTTCTTCATGGTCCACACCTAACTCCGAACCTAAACACAACAACCACGAACAAGACATTGCAATAGCTATTGCTATGGCTGGTTCTTCTATCCCTTTCTTCAAACCCGAACCACAACCCGAACCTGATAACAACAACAACAACTTCTACAACAACAACAACAACAACAACGTTGTTAATGTTAATAATGTTATTCCCTTACCAGACAATTTTCTCATGCACCAAAACACAAACACCATAGATTCAATTTCAAATCCACACTCTTTCTTTCACAACAATAACAACTACTTCTTCAACAACAATAATACCAATAACCCATTTGAAATGGGGTTTGAAAATGGATTCTTTATGGGAAACAACAACACTTCAAATTCCCCTGTTTTCATGGGTGGGTCCCTTTCAGCTTCTGAGTTTCCTCCGAGTCTTGAACTCGATGCTGCTCCAGTACCACCTTTCAGTGCTTCGTTTTCTATGCCTCTTGAGCTAGCTCAACCACAACCACAACAACATCATCATCATCATCAGCAACAACAACAACAACAACCCACGACGCTGTTTCAGAAGCGTCGTGGGGCGTTGGAGATTCCGAGGTTGGAGACCGTGGGGAACAAGAAGAAGAGAAAGGTGGAGAAGAGCTGGGAAGAAGAAGGAAGTGGTGGTGGTGATGATGTTGATGATTTTTCTGAGTTGAATTATGATTCTGATGAGAATGGGAATGATTTGAATAATTCAAATGGGACTGTTGTTACTGGTGGAGATCAGAAGGGGAAGAAGAAGAAGGGGCTTCCTGCAAAGAATTTGATGGCTGAGAGGCGCCGGAGGAAGAAACTCAATGATAGGTTGTATATGCTTAGGTCTGTTGTGCCTAAAATTAGCAAGATGGACAGGGCTTCAATACTCGGAGATGCAGTTGACTACTTGAAGGAGCTGCTGCAGCGGATTAATAATCTTCATAATGAACTGGAATCAACTCCACCTGGCTCACTGCTGCAACCTTCTGCAAGTGCAAGCTTTCACCCGTTGACACCCACTCCACCGACTCTTCCCTGTCGAGTCAAAGAGGATCTATATCCCGGTGACTTGCTAAGCCCCAAAAACCAATCTCCCAAGGTGGAAGTTAGAGTAAGGGAAGGGAGAGCCGTCAACATTCATATGTTTTGTACTCGCAGACCAGGACTTTTGCTATCTACCATGAGGGCTTTGGATAACCTTGGATTGGATGTTCAGCAGGCTGTTATCAGTTGTTTCAATGGCTTTGCATTAGACGTGTTCAGAGCTGAGCAATGCAGAGAAGGCCAGGATGTACTCCCCGAGCAAATTAAAGCAGTGCTGTTGGATTCAGCGGGCTACCATGGTTTGAATTGA
Protein sequence

>Msa1157680

MERYTLPLPPQQVHNTLTIPWTEPQQQQQESPSSWSTPNSEPKHNNHEQDIAIAIAMAGSSIPFFKPEPQPEPDNNNNNFYNNNNNNNVVNVNNVIPLPDNFLMHQNTNTIDSISNPHSFFHNNNNYFFNNNNTNNPFEMGFENGFFMGNNNTSNSPVFMGGSLSASEFPPSLELDAAPVPPFSASFSMPLELAQPQPQQHHHHHQQQQQQQPTTLFQKRRGALEIPRLETVGNKKKRKVEKSWEEEGSGGGDDVDDFSELNYDSDENGNDLNNSNGTVVTGGDQKGKKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINNLHNELESTPPGSLLQPSASASFHPLTPTPPTLPCRVKEDLYPGDLLSPKNQSPKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCREGQDVLPEQIKAVLLDSAGYHGLN*