Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0492530 | XP_039688223.1 | 95.322 | 342 | 14 | 1 | 1 | 340 | 1 | 342 | 0.0 | 644 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0492530 | A0A396IKZ4 | 95.322 | 342 | 14 | 1 | 1 | 340 | 1 | 342 | 0.0 | 644 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0345350 | Msa0492530 | 0.826056 | 3.343990e-54 | -8.615850e-47 |
| Msa0345390 | Msa0492530 | 0.851328 | 9.533614e-61 | -8.615850e-47 |
| Msa0492530 | Msa0719420 | 0.800649 | 1.305470e-48 | -8.615850e-47 |
| Msa0492530 | Msa0741230 | 0.801916 | 7.182689e-49 | -8.615850e-47 |
| Msa0492530 | Msa0789680 | 0.804429 | 2.169441e-49 | -8.615850e-47 |
| Msa0492530 | Msa0861860 | 0.812159 | 4.877895e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0492530 | MtrunA17_Chr3g0085271 | 95.322 | 342 | 14 | 1 | 1 | 340 | 1 | 342 | 0.0 | 644 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0492530 | AT5G48240.1 | 45.538 | 325 | 143 | 8 | 16 | 339 | 18 | 309 | 4.93e-79 | 244 |
| Msa0492530 | AT5G48240.3 | 42.391 | 368 | 139 | 8 | 16 | 339 | 18 | 356 | 2.92e-72 | 228 |
| Msa0492530 | AT5G48240.2 | 44.898 | 294 | 120 | 7 | 16 | 308 | 18 | 270 | 1.44e-60 | 196 |
Find 115 sgRNAs with CRISPR-Local
Find 353 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATAGTAATAGACTATTTA+TGG | 0.119328 | 3_4:+16321915 | Msa0492530:three_prime_UTR |
| TGTCACACCTGCTAATTATT+TGG | 0.128361 | 3_4:+16319302 | Msa0492530:CDS |
| CGCTGAAAAGAAGGCTTCTT+TGG | 0.194609 | 3_4:-16320697 | None:intergenic |
| CTTTATTATCCAATTGTATT+AGG | 0.230112 | 3_4:+16321881 | Msa0492530:three_prime_UTR |
| ATAAAAGTTCCTCATCAAAA+TGG | 0.262718 | 3_4:-16321984 | None:intergenic |
| TCAGTGAACAAATTCAAAAT+TGG | 0.269250 | 3_4:-16321826 | None:intergenic |
| AATATCTCGTTTGAGTTGTT+AGG | 0.289962 | 3_4:-16316639 | None:intergenic |
| TGTGGTGGCTTCATCACTTT+TGG | 0.308341 | 3_4:-16318534 | None:intergenic |
| GTTTGAGTTGTTAGGGGTTA+AGG | 0.309508 | 3_4:-16316631 | None:intergenic |
| CTTCATCGGAACTGCTATCT+TGG | 0.315922 | 3_4:-16321645 | None:intergenic |
| GTGAAGGTTGTAAAGCATTC+AGG | 0.319257 | 3_4:+16318889 | Msa0492530:CDS |
| GAGCTGGGAAAGAGGAAGTT+TGG | 0.319454 | 3_4:+16318477 | Msa0492530:CDS |
| TTGAATTATAAAACAATTCA+TGG | 0.322795 | 3_4:+16318422 | Msa0492530:exon |
| AGCAGTTCCGATGAAGATTA+AGG | 0.322931 | 3_4:+16321652 | Msa0492530:CDS |
| CTTCTTTATAATACTCTTGA+AGG | 0.329380 | 3_4:-16318916 | None:intergenic |
| GAGAGGATGAACAACCTTCT+TGG | 0.339326 | 3_4:+16321449 | Msa0492530:CDS |
| CTTTGCATCCCTGTTCTTTG+AGG | 0.339480 | 3_4:-16319666 | None:intergenic |
| TCACTGAATTTAGTAATTCC+TGG | 0.358866 | 3_4:-16318870 | None:intergenic |
| ATTATTTCGTCGTAGGGTAT+TGG | 0.363471 | 3_4:+16322021 | Msa0492530:three_prime_UTR |
| GGCTGGACCCCTCAAAGAAC+AGG | 0.375162 | 3_4:+16319657 | Msa0492530:CDS |
| TTCTGCTACCCCTTCATCTT+CGG | 0.376152 | 3_4:-16318763 | None:intergenic |
| TTTGCATCCCTGTTCTTTGA+GGG | 0.379386 | 3_4:-16319665 | None:intergenic |
| ATGGCTGATTGGCTGGCCTT+TGG | 0.383693 | 3_4:+16321793 | Msa0492530:three_prime_UTR |
| GCTGACAAGTTCGAGAATAA+AGG | 0.387185 | 3_4:+16321495 | Msa0492530:CDS |
| CTTGTTACAGCTAGCAGAAA+AGG | 0.390626 | 3_4:+16319275 | Msa0492530:intron |
| TCCCTTGTTTGTGCTTGCAT+TGG | 0.391353 | 3_4:-16321428 | None:intergenic |
| TTCATCATGTTCAGTAACTT+TGG | 0.395085 | 3_4:-16321850 | None:intergenic |
| TTTGAGTTGTTAGGGGTTAA+GGG | 0.401318 | 3_4:-16316630 | None:intergenic |
| AATCATATTCCTAATACAAT+TGG | 0.407003 | 3_4:-16321890 | None:intergenic |
| ATATCTCGTTTGAGTTGTTA+GGG | 0.411012 | 3_4:-16316638 | None:intergenic |
| TGTAAAGTTTCTTCATTTGT+TGG | 0.412234 | 3_4:-16318581 | None:intergenic |
| ACGGCGGAAGTGACAGCGGC+TGG | 0.419525 | 3_4:-16316671 | None:intergenic |
| AGTAACGTAATGAGCAGAAA+TGG | 0.420863 | 3_4:-16321746 | None:intergenic |
| CTTATAAGTGTCGCGACAAA+AGG | 0.425927 | 3_4:+16319342 | Msa0492530:CDS |
| AAACTTGATGGCTGATTGGC+TGG | 0.426019 | 3_4:+16321786 | Msa0492530:three_prime_UTR |
| GGAGACAGAGCGCAAGATCA+AGG | 0.426021 | 3_4:+16319095 | Msa0492530:CDS |
| CTCATTACGTTACTAAAGAA+TGG | 0.426920 | 3_4:+16321755 | Msa0492530:three_prime_UTR |
| GAGACAACTGCCCCTGCTAC+TGG | 0.429501 | 3_4:+16318645 | Msa0492530:CDS |
| GGAGAAACTTGATGGCTGAT+TGG | 0.433716 | 3_4:+16321782 | Msa0492530:three_prime_UTR |
| CGTGTTTCTAGTGGGATAAT+CGG | 0.434301 | 3_4:+16321702 | Msa0492530:three_prime_UTR |
| AGAGGATGAACAACCTTCTT+GGG | 0.435774 | 3_4:+16321450 | Msa0492530:CDS |
| ACGTTACTAAAGAATGGAAT+TGG | 0.440530 | 3_4:+16321761 | Msa0492530:three_prime_UTR |
| GCGTTAGGGAAGCCAGCTAT+TGG | 0.445925 | 3_4:+16320717 | Msa0492530:CDS |
| TTCATCGGAACTGCTATCTT+GGG | 0.454720 | 3_4:-16321644 | None:intergenic |
| TAAAAGTTCCTCATCAAAAT+GGG | 0.455210 | 3_4:-16321983 | None:intergenic |
| ATCACCTTTGCACCAATAGC+TGG | 0.456798 | 3_4:-16320729 | None:intergenic |
| ATGGAAGTGAGCTGGGAAAG+AGG | 0.457388 | 3_4:+16318469 | Msa0492530:CDS |
| CAAGTTCGAGAATAAAGGAT+TGG | 0.462911 | 3_4:+16321500 | Msa0492530:CDS |
| TTCAAAACCTTAATCTTCAT+CGG | 0.464287 | 3_4:-16321659 | None:intergenic |
| CCGAAAAGTAATCGAAAGCT+TGG | 0.464465 | 3_4:+16321946 | Msa0492530:three_prime_UTR |
| AGTTGTTAGGGGTTAAGGGA+AGG | 0.474131 | 3_4:-16316626 | None:intergenic |
| GTTGTTAGGGGTTAAGGGAA+GGG | 0.474680 | 3_4:-16316625 | None:intergenic |
| CTTCTAGTACTCCCAGTAGC+AGG | 0.475505 | 3_4:-16318657 | None:intergenic |
| GAGTGTTTCTGATGAGTTGT+TGG | 0.478230 | 3_4:+16318938 | Msa0492530:CDS |
| ATGGAATTGGAGAAACTTGA+TGG | 0.484582 | 3_4:+16321774 | Msa0492530:three_prime_UTR |
| CTTCCCTAACGCTGAAAAGA+AGG | 0.488467 | 3_4:-16320706 | None:intergenic |
| AAAGCTCAAGTTGCTCAGAA+AGG | 0.489370 | 3_4:+16319635 | Msa0492530:CDS |
| TTCTTGTGATCTGACAATAC+TGG | 0.489621 | 3_4:-16319045 | None:intergenic |
| TTTAGTATTATTTCGTCGTA+GGG | 0.489691 | 3_4:+16322015 | Msa0492530:three_prime_UTR |
| TGAACAAATTCAAAATTGGT+TGG | 0.491540 | 3_4:-16321822 | None:intergenic |
| AATTGGTTGGTTTATACCAA+AGG | 0.494286 | 3_4:-16321809 | None:intergenic |
| ATTTAGTATTATTTCGTCGT+AGG | 0.496791 | 3_4:+16322014 | Msa0492530:three_prime_UTR |
| AAGCTCAAGTTGCTCAGAAA+GGG | 0.498953 | 3_4:+16319636 | Msa0492530:CDS |
| AGCATATAATTATCGCGTAA+TGG | 0.502059 | 3_4:-16321475 | None:intergenic |
| GAAGTGACAGCGGCTGGGAA+AGG | 0.502170 | 3_4:-16316665 | None:intergenic |
| AAGTTCGAGAATAAAGGATT+GGG | 0.504352 | 3_4:+16321501 | Msa0492530:CDS |
| TATAGAAAAGCTCGCGGAAG+AGG | 0.510403 | 3_4:+16319074 | Msa0492530:CDS |
| CTCAAAGAACAGGGATGCAA+AGG | 0.511691 | 3_4:+16319667 | Msa0492530:CDS |
| GAAGATCTATCCGAAGATGA+AGG | 0.518592 | 3_4:+16318753 | Msa0492530:CDS |
| TTGCATCCCTGTTCTTTGAG+GGG | 0.522520 | 3_4:-16319664 | None:intergenic |
| GAGGAGGATGAGATTCAGCC+AGG | 0.523349 | 3_4:+16318852 | Msa0492530:CDS |
| TTGTTACAGCTAGCAGAAAA+GGG | 0.523614 | 3_4:+16319276 | Msa0492530:intron |
| TTCTAGTACTCCCAGTAGCA+GGG | 0.533288 | 3_4:-16318656 | None:intergenic |
| AGACAACTGCCCCTGCTACT+GGG | 0.534405 | 3_4:+16318646 | Msa0492530:CDS |
| GGCCAATGCAAGCACAAACA+AGG | 0.534686 | 3_4:+16321426 | Msa0492530:intron |
| GAAGAAAGGTTACCAGATGA+TGG | 0.535508 | 3_4:-16316746 | None:intergenic |
| TGCGCGTCCAAATAATTAGC+AGG | 0.542869 | 3_4:-16319309 | None:intergenic |
| GAGACAGAGCGCAAGATCAA+GGG | 0.544740 | 3_4:+16319096 | Msa0492530:CDS |
| GGTTGAGCATGGAAGTGAGC+TGG | 0.552552 | 3_4:+16318461 | Msa0492530:CDS |
| TCAAGTTGCTCAGAAAGGGC+TGG | 0.553946 | 3_4:+16319640 | Msa0492530:CDS |
| AAGATCTATCCGAAGATGAA+GGG | 0.556404 | 3_4:+16318754 | Msa0492530:CDS |
| ACTTTCTTCTGTCCGTGTGG+TGG | 0.558848 | 3_4:-16318549 | None:intergenic |
| CAGCATCAGCGTGTTTCTAG+TGG | 0.559433 | 3_4:+16321693 | Msa0492530:three_prime_UTR |
| GAAACACAAGTGGTTGAGCA+TGG | 0.561474 | 3_4:+16318450 | Msa0492530:CDS |
| CTCTGAGGATGAAGATGATG+AGG | 0.568128 | 3_4:+16318833 | Msa0492530:CDS |
| TGGGAAAGAGGAAGTTTGGT+AGG | 0.575576 | 3_4:+16318481 | Msa0492530:CDS |
| TCGCGTAATGGAGCCCAAGA+AGG | 0.580268 | 3_4:-16321463 | None:intergenic |
| TCAAAGAACAGGGATGCAAA+GGG | 0.580392 | 3_4:+16319668 | Msa0492530:CDS |
| GGAATTACTAAATTCAGTGA+AGG | 0.581563 | 3_4:+16318873 | Msa0492530:CDS |
| CGGCGGAAGTGACAGCGGCT+GGG | 0.582939 | 3_4:-16316670 | None:intergenic |
| GTTGAGCATGGAAGTGAGCT+GGG | 0.585137 | 3_4:+16318462 | Msa0492530:CDS |
| GAAGCCAGCTATTGGTGCAA+AGG | 0.585865 | 3_4:+16320725 | Msa0492530:CDS |
| CAGTTATCACAAACTCTCAA+CGG | 0.590260 | 3_4:+16316703 | Msa0492530:five_prime_UTR |
| ATAAGTGTCGCGACAAAAGG+AGG | 0.590468 | 3_4:+16319345 | Msa0492530:CDS |
| GAAGATGAAGGGGTAGCAGA+AGG | 0.603387 | 3_4:+16318765 | Msa0492530:CDS |
| AGCATCAGCGTGTTTCTAGT+GGG | 0.603770 | 3_4:+16321694 | Msa0492530:three_prime_UTR |
| GCCAATGCAAGCACAAACAA+GGG | 0.604219 | 3_4:+16321427 | Msa0492530:CDS |
| TGCAAGCACAAACAAGGGAG+AGG | 0.605005 | 3_4:+16321432 | Msa0492530:CDS |
| TTAACTTTCTTCTGTCCGTG+TGG | 0.619849 | 3_4:-16318552 | None:intergenic |
| GTGATAACTGTAGAGATGAA+CGG | 0.638571 | 3_4:-16316690 | None:intergenic |
| TATCTCGTTTGAGTTGTTAG+GGG | 0.644096 | 3_4:-16316637 | None:intergenic |
| GTGGCATCTATGAAGACTAG+AGG | 0.647773 | 3_4:+16318681 | Msa0492530:CDS |
| AGATCTATCCGAAGATGAAG+GGG | 0.651704 | 3_4:+16318755 | Msa0492530:CDS |
| AGGAAGTTTGGTAGGAACCA+AGG | 0.652606 | 3_4:+16318489 | Msa0492530:CDS |
| ATGAACGGCGGAAGTGACAG+CGG | 0.654528 | 3_4:-16316675 | None:intergenic |
| TAAGAAAGTTAATTTCTCTG+AGG | 0.655143 | 3_4:+16318818 | Msa0492530:CDS |
| TCTAGTACTCCCAGTAGCAG+GGG | 0.660080 | 3_4:-16318655 | None:intergenic |
| TGAGGATGAAGATGATGAGG+AGG | 0.663150 | 3_4:+16318836 | Msa0492530:CDS |
| TACTGGGAGTACTAGAAGTG+TGG | 0.666406 | 3_4:+16318662 | Msa0492530:CDS |
| CATGGCTGAAGAAACACAAG+TGG | 0.666963 | 3_4:+16318440 | Msa0492530:exon |
| GCTGGACCCCTCAAAGAACA+GGG | 0.672553 | 3_4:+16319658 | Msa0492530:CDS |
| AAAGTGATGAAGCCACCACA+CGG | 0.690683 | 3_4:+16318537 | Msa0492530:CDS |
| TCTTGTTATAGAAAAGCTCG+CGG | 0.691844 | 3_4:+16319068 | Msa0492530:CDS |
| AGGTTGTAAAGCATTCAGGA+TGG | 0.710807 | 3_4:+16318893 | Msa0492530:CDS |
| ATAACTGTAGAGATGAACGG+CGG | 0.780829 | 3_4:-16316687 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATGAAATTAAGAAA+GGG | - | chr3_4:16316773-16316792 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTAGAAAACT+TGG | - | chr3_4:16317573-16317592 | None:intergenic | 10.0% |
| !! | TTATTAGAGAAATAAAAAAT+TGG | + | chr3_4:16318993-16319012 | Msa0492530:intron | 10.0% |
| !!! | AAGTTTTCTATTTTAAAAAT+AGG | - | chr3_4:16320059-16320078 | None:intergenic | 10.0% |
| !! | ATTAATTATCTAAAAAACAT+TGG | - | chr3_4:16320295-16320314 | None:intergenic | 10.0% |
| !! | AATATATGAAATTAAGAAAG+GGG | - | chr3_4:16316772-16316791 | None:intergenic | 15.0% |
| !! | GAAATATATGAAATTAAGAA+AGG | - | chr3_4:16316774-16316793 | None:intergenic | 15.0% |
| !!! | TTATTCTGGTTTTTTTTTTT+TGG | + | chr3_4:16316825-16316844 | Msa0492530:intron | 15.0% |
| !!! | TTATTTTTGCTAAGTTATAA+TGG | + | chr3_4:16317140-16317159 | Msa0492530:intron | 15.0% |
| !!! | TATTTTTGCTAAGTTATAAT+GGG | + | chr3_4:16317141-16317160 | Msa0492530:intron | 15.0% |
| !!! | ATTGATTTTTTTTTCAGTTA+CGG | - | chr3_4:16317231-16317250 | None:intergenic | 15.0% |
| !! | TTGAATTATAAAACAATTCA+TGG | + | chr3_4:16318422-16318441 | Msa0492530:exon | 15.0% |
| !!! | TTTCTTTTTCTTTTAAATAG+AGG | + | chr3_4:16319376-16319395 | Msa0492530:intron | 15.0% |
| !! | GATTATCATTATTAAATTGA+AGG | + | chr3_4:16319585-16319604 | Msa0492530:intron | 15.0% |
| !! | TTCTTTAATAATAAAACTTG+AGG | + | chr3_4:16320012-16320031 | Msa0492530:intron | 15.0% |
| !!! | CTTTAAAAAAAATGAATTGA+AGG | - | chr3_4:16320211-16320230 | None:intergenic | 15.0% |
| !!! | TCAATTCATTTTTTTTAAAG+AGG | + | chr3_4:16320211-16320230 | Msa0492530:intron | 15.0% |
| !! | CAACAATTAAATACTTAAAT+AGG | - | chr3_4:16320488-16320507 | None:intergenic | 15.0% |
| !! | TTTAATTGTTGAAAAATAAG+AGG | + | chr3_4:16320497-16320516 | Msa0492530:intron | 15.0% |
| !! | TTAATTGTTGAAAAATAAGA+GGG | + | chr3_4:16320498-16320517 | Msa0492530:intron | 15.0% |
| !! | AATAAATAGAGTAAATGATT+TGG | - | chr3_4:16320892-16320911 | None:intergenic | 15.0% |
| !!! | TAACTTTAAAATAAACTTAC+TGG | - | chr3_4:16321538-16321557 | None:intergenic | 15.0% |
| !! | ATATATGAAATTAAGAAAGG+GGG | - | chr3_4:16316771-16316790 | None:intergenic | 20.0% |
| !!! | TTCATATATTTCACCAATTT+TGG | + | chr3_4:16316782-16316801 | Msa0492530:intron | 20.0% |
| !!! | TCTCATCTTTTTTTTTATTC+TGG | + | chr3_4:16316811-16316830 | Msa0492530:intron | 20.0% |
| !! | GTGTTTAATGTATATTTGAT+TGG | + | chr3_4:16316847-16316866 | Msa0492530:intron | 20.0% |
| !!! | ATTTTGATTTTATTGGAATG+TGG | + | chr3_4:16316926-16316945 | Msa0492530:intron | 20.0% |
| !! | AAATATTGAAAACCTTAATG+TGG | + | chr3_4:16317611-16317630 | Msa0492530:intron | 20.0% |
| !!! | ATTGTTATTACCATCTTTTA+GGG | + | chr3_4:16317674-16317693 | Msa0492530:intron | 20.0% |
| !! | ATTGTTTAAGGAATTAAAAG+AGG | + | chr3_4:16317857-16317876 | Msa0492530:intron | 20.0% |
| !!! | ATTTGTGAATTTTGTTAAGA+AGG | + | chr3_4:16317968-16317987 | Msa0492530:intron | 20.0% |
| !!! | TTTGTGAATTTTGTTAAGAA+GGG | + | chr3_4:16317969-16317988 | Msa0492530:intron | 20.0% |
| !! | ATCTATATGATGATAAGTTT+AGG | - | chr3_4:16318041-16318060 | None:intergenic | 20.0% |
| !! | ATCAGTTAAATTAGTAAGTA+AGG | + | chr3_4:16318093-16318112 | Msa0492530:intron | 20.0% |
| !! | TGAAAATTGAATTCGTATTT+CGG | - | chr3_4:16318224-16318243 | None:intergenic | 20.0% |
| !!! | CATAAATTTTAGTGCTAATT+GGG | - | chr3_4:16319185-16319204 | None:intergenic | 20.0% |
| !!! | ACATAAATTTTAGTGCTAAT+TGG | - | chr3_4:16319186-16319205 | None:intergenic | 20.0% |
| !! | TAGACCAAAATATTATCTAT+CGG | + | chr3_4:16319222-16319241 | Msa0492530:intron | 20.0% |
| !! | AAACAAAATTTGCAAATGTT+AGG | - | chr3_4:16319529-16319548 | None:intergenic | 20.0% |
| !!! | TTTCAGTTTATCTTTTATAC+AGG | + | chr3_4:16319810-16319829 | Msa0492530:intron | 20.0% |
| !!! | TTCAGTTTATCTTTTATACA+GGG | + | chr3_4:16319811-16319830 | Msa0492530:intron | 20.0% |
| !! | TAATTGTTGAAAAATAAGAG+GGG | + | chr3_4:16320499-16320518 | Msa0492530:intron | 20.0% |
| !! | CAAATTAGATAGTATGAATT+GGG | - | chr3_4:16320649-16320668 | None:intergenic | 20.0% |
| !! | ACAAATTAGATAGTATGAAT+TGG | - | chr3_4:16320650-16320669 | None:intergenic | 20.0% |
| !!! | TCTGTTGATAATAACTAATT+AGG | + | chr3_4:16320798-16320817 | Msa0492530:intron | 20.0% |
| !!! | CATTCAACTTATATACATTT+TGG | - | chr3_4:16320862-16320881 | None:intergenic | 20.0% |
| !!! | TCTTTCATTTTTCGAATAAA+GGG | - | chr3_4:16320949-16320968 | None:intergenic | 20.0% |
| !!! | TTCTTTCATTTTTCGAATAA+AGG | - | chr3_4:16320950-16320969 | None:intergenic | 20.0% |
| !! | TGCATATAAATTCAGAAAAT+CGG | - | chr3_4:16321021-16321040 | None:intergenic | 20.0% |
| !!! | ACAATAGAACAATTTTAAAG+TGG | - | chr3_4:16321178-16321197 | None:intergenic | 20.0% |
| !! | CTTTATTATCCAATTGTATT+AGG | + | chr3_4:16321881-16321900 | Msa0492530:three_prime_UTR | 20.0% |
| !! | AATCATATTCCTAATACAAT+TGG | - | chr3_4:16321893-16321912 | None:intergenic | 20.0% |
| !! | CTATAGTAATAGACTATTTA+TGG | + | chr3_4:16321915-16321934 | Msa0492530:three_prime_UTR | 20.0% |
| !!! | GTTTTAGATTGTAATCATTC+AGG | - | chr3_4:16316996-16317015 | None:intergenic | 25.0% |
| !! | TTTCATACTTTTAAGCTCAT+AGG | + | chr3_4:16317274-16317293 | Msa0492530:intron | 25.0% |
| !!! | TTTTTAGAAAACTTGGTATC+CGG | - | chr3_4:16317566-16317585 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAAACTGCAGCT+AGG | + | chr3_4:16317588-16317607 | Msa0492530:intron | 25.0% |
| ! | AAAGATGGTAATAACAATCA+TGG | - | chr3_4:16317672-16317691 | None:intergenic | 25.0% |
| !!! | GATTGTTATTACCATCTTTT+AGG | + | chr3_4:16317673-16317692 | Msa0492530:intron | 25.0% |
| ! | TTCCTTAAACAATGTTCTTA+GGG | - | chr3_4:16317850-16317869 | None:intergenic | 25.0% |
| ! | ATTCCTTAAACAATGTTCTT+AGG | - | chr3_4:16317851-16317870 | None:intergenic | 25.0% |
| ! | GTTAAATTAGTAAGTAAGGT+AGG | + | chr3_4:16318097-16318116 | Msa0492530:intron | 25.0% |
| !!! | TTCAACAACGTAAGTTTTAT+TGG | - | chr3_4:16318191-16318210 | None:intergenic | 25.0% |
| ! | TTAGCAGAAAAATATAGACT+CGG | - | chr3_4:16318274-16318293 | None:intergenic | 25.0% |
| !! | GTTTCTTACTTGACTTTTTA+CGG | - | chr3_4:16318515-16318534 | None:intergenic | 25.0% |
| ! | TGTAAAGTTTCTTCATTTGT+TGG | - | chr3_4:16318584-16318603 | None:intergenic | 25.0% |
| ! | TAAGAAAGTTAATTTCTCTG+AGG | + | chr3_4:16318818-16318837 | Msa0492530:CDS | 25.0% |
| ! | CTTCTTTATAATACTCTTGA+AGG | - | chr3_4:16318919-16318938 | None:intergenic | 25.0% |
| ! | TAAACTTGAACAACTCTATA+GGG | + | chr3_4:16319021-16319040 | Msa0492530:intron | 25.0% |
| !!! | ATATTTTGGTCTACGATAAT+TGG | - | chr3_4:16319215-16319234 | None:intergenic | 25.0% |
| ! | AGACCAAAATATTATCTATC+GGG | + | chr3_4:16319223-16319242 | Msa0492530:intron | 25.0% |
| !! | TTACCCGATAGATAATATTT+TGG | - | chr3_4:16319229-16319248 | None:intergenic | 25.0% |
| ! | AAAGAAAAAGGAATCTCATT+TGG | + | chr3_4:16319777-16319796 | Msa0492530:intron | 25.0% |
| ! | AAGAAAAAGGAATCTCATTT+GGG | + | chr3_4:16319778-16319797 | Msa0492530:intron | 25.0% |
| ! | AAATAGAAAACTTAAGAGTC+AGG | + | chr3_4:16320066-16320085 | Msa0492530:intron | 25.0% |
| ! | TACGTATTAAGGTGATTATA+GGG | - | chr3_4:16320103-16320122 | None:intergenic | 25.0% |
| ! | TTACGTATTAAGGTGATTAT+AGG | - | chr3_4:16320104-16320123 | None:intergenic | 25.0% |
| ! | ACGATGTGTTAAAAAAAATG+TGG | - | chr3_4:16320156-16320175 | None:intergenic | 25.0% |
| ! | GTTTACTGAGGTTTAAAAAA+AGG | - | chr3_4:16320256-16320275 | None:intergenic | 25.0% |
| ! | AAAATCAGTGTTATCAATAG+AGG | - | chr3_4:16320387-16320406 | None:intergenic | 25.0% |
| !!! | ATATGATGTTCTAAGAATGA+GGG | + | chr3_4:16320444-16320463 | Msa0492530:intron | 25.0% |
| !!! | GCAAACATTTTGAGTATATT+AGG | - | chr3_4:16320627-16320646 | None:intergenic | 25.0% |
| ! | ACCTCTAAATTAATGTGATA+TGG | + | chr3_4:16321110-16321129 | Msa0492530:intron | 25.0% |
| ! | TCCATATCACATTAATTTAG+AGG | - | chr3_4:16321114-16321133 | None:intergenic | 25.0% |
| !! | ACTTTGAACATGATGTTTTT+AGG | + | chr3_4:16321229-16321248 | Msa0492530:intron | 25.0% |
| !! | TCCAAGCAATTTGATAATTA+GGG | - | chr3_4:16321394-16321413 | None:intergenic | 25.0% |
| !! | ATCCAAGCAATTTGATAATT+AGG | - | chr3_4:16321395-16321414 | None:intergenic | 25.0% |
| ! | ATTATCAAATTGCTTGGATT+TGG | + | chr3_4:16321396-16321415 | Msa0492530:intron | 25.0% |
| ! | TTCAAAACCTTAATCTTCAT+CGG | - | chr3_4:16321662-16321681 | None:intergenic | 25.0% |
| !!! | TAAGGTTTTGAAACTTGAAA+AGG | + | chr3_4:16321670-16321689 | Msa0492530:exon | 25.0% |
| ! | TGAACAAATTCAAAATTGGT+TGG | - | chr3_4:16321825-16321844 | None:intergenic | 25.0% |
| ! | TCAGTGAACAAATTCAAAAT+TGG | - | chr3_4:16321829-16321848 | None:intergenic | 25.0% |
| !!! | TTTAATTTCCCATTTTGATG+AGG | + | chr3_4:16321975-16321994 | Msa0492530:three_prime_UTR | 25.0% |
| ! | TAAAAGTTCCTCATCAAAAT+GGG | - | chr3_4:16321986-16322005 | None:intergenic | 25.0% |
| ! | ATAAAAGTTCCTCATCAAAA+TGG | - | chr3_4:16321987-16322006 | None:intergenic | 25.0% |
| ! | ATTTAGTATTATTTCGTCGT+AGG | + | chr3_4:16322014-16322033 | Msa0492530:three_prime_UTR | 25.0% |
| ! | TTTAGTATTATTTCGTCGTA+GGG | + | chr3_4:16322015-16322034 | Msa0492530:three_prime_UTR | 25.0% |
| !! | ATATCTCGTTTGAGTTGTTA+GGG | - | chr3_4:16316641-16316660 | None:intergenic | 30.0% |
| !! | AATATCTCGTTTGAGTTGTT+AGG | - | chr3_4:16316642-16316661 | None:intergenic | 30.0% |
| AAGCTATAAGCTCAAATTTG+TGG | - | chr3_4:16317051-16317070 | None:intergenic | 30.0% | |
| !! | AGAAAGTGTCAGTTATCAAA+CGG | - | chr3_4:16317106-16317125 | None:intergenic | 30.0% |
| !! | GTTTTAAATCGCTGTTGTAA+TGG | + | chr3_4:16317320-16317339 | Msa0492530:intron | 30.0% |
| TATTGAAAACCTTAATGTGG+TGG | + | chr3_4:16317614-16317633 | Msa0492530:intron | 30.0% | |
| ! | AATGTTTACGTCAACAGTTT+TGG | - | chr3_4:16317640-16317659 | None:intergenic | 30.0% |
| ACAAGAGAATCAAATTGAAC+AGG | - | chr3_4:16317796-16317815 | None:intergenic | 30.0% | |
| TTTGTTAAGAAGGGAGAAAA+TGG | + | chr3_4:16317978-16317997 | Msa0492530:intron | 30.0% | |
| TTGTTAAGAAGGGAGAAAAT+GGG | + | chr3_4:16317979-16317998 | Msa0492530:intron | 30.0% | |
| TAAGGTAGGTAAAGTTTGTA+GGG | + | chr3_4:16318111-16318130 | Msa0492530:intron | 30.0% | |
| TAGCAGAAAAATATAGACTC+GGG | - | chr3_4:16318273-16318292 | None:intergenic | 30.0% | |
| TATATGTCACATATGAAGAC+AGG | - | chr3_4:16318400-16318419 | None:intergenic | 30.0% | |
| TGTCTTCATATGTGACATAT+AGG | + | chr3_4:16318399-16318418 | Msa0492530:intron | 30.0% | |
| TCACTGAATTTAGTAATTCC+TGG | - | chr3_4:16318873-16318892 | None:intergenic | 30.0% | |
| GGAATTACTAAATTCAGTGA+AGG | + | chr3_4:16318873-16318892 | Msa0492530:CDS | 30.0% | |
| CTAAACTTGAACAACTCTAT+AGG | + | chr3_4:16319020-16319039 | Msa0492530:intron | 30.0% | |
| GCAACAGTTAAATAAGTAAG+AGG | - | chr3_4:16319443-16319462 | None:intergenic | 30.0% | |
| ACCATCTCAAGTAAAGAAAA+AGG | + | chr3_4:16319765-16319784 | Msa0492530:intron | 30.0% | |
| ! | TCCTTTTTCTTTACTTGAGA+TGG | - | chr3_4:16319769-16319788 | None:intergenic | 30.0% |
| AGAAAAAGGAATCTCATTTG+GGG | + | chr3_4:16319779-16319798 | Msa0492530:intron | 30.0% | |
| ! | GGGAAATTTAACAACTGTTT+TGG | + | chr3_4:16319831-16319850 | Msa0492530:intron | 30.0% |
| TGAGAGAAGTTTACGTATTA+AGG | - | chr3_4:16320114-16320133 | None:intergenic | 30.0% | |
| CTGCATAATAAAGTTTACTG+AGG | - | chr3_4:16320268-16320287 | None:intergenic | 30.0% | |
| !! | GATATGATGTTCTAAGAATG+AGG | + | chr3_4:16320443-16320462 | Msa0492530:intron | 30.0% |
| !! | TATGATGTTCTAAGAATGAG+GGG | + | chr3_4:16320445-16320464 | Msa0492530:intron | 30.0% |
| !!! | ACCTATCTGTTCTATTTTTG+TGG | + | chr3_4:16320599-16320618 | Msa0492530:intron | 30.0% |
| ACCACAAAAATAGAACAGAT+AGG | - | chr3_4:16320603-16320622 | None:intergenic | 30.0% | |
| CTTAATTCTGTTGAAGAACA+AGG | + | chr3_4:16320832-16320851 | Msa0492530:intron | 30.0% | |
| TAGACTTGAGCATTTACTTA+CGG | + | chr3_4:16320912-16320931 | Msa0492530:intron | 30.0% | |
| TCCCTAATTATCAAATTGCT+TGG | + | chr3_4:16321390-16321409 | Msa0492530:intron | 30.0% | |
| AGCATATAATTATCGCGTAA+TGG | - | chr3_4:16321478-16321497 | None:intergenic | 30.0% | |
| AAGTTCGAGAATAAAGGATT+GGG | + | chr3_4:16321501-16321520 | Msa0492530:CDS | 30.0% | |
| CTCATTACGTTACTAAAGAA+TGG | + | chr3_4:16321755-16321774 | Msa0492530:three_prime_UTR | 30.0% | |
| ACGTTACTAAAGAATGGAAT+TGG | + | chr3_4:16321761-16321780 | Msa0492530:three_prime_UTR | 30.0% | |
| !! | AATTGGTTGGTTTATACCAA+AGG | - | chr3_4:16321812-16321831 | None:intergenic | 30.0% |
| TTCATCATGTTCAGTAACTT+TGG | - | chr3_4:16321853-16321872 | None:intergenic | 30.0% | |
| !! | TTTGAGTTGTTAGGGGTTAA+GGG | - | chr3_4:16316633-16316652 | None:intergenic | 35.0% |
| !! | TATCTCGTTTGAGTTGTTAG+GGG | - | chr3_4:16316640-16316659 | None:intergenic | 35.0% |
| GTGATAACTGTAGAGATGAA+CGG | - | chr3_4:16316693-16316712 | None:intergenic | 35.0% | |
| CAGTTATCACAAACTCTCAA+CGG | + | chr3_4:16316703-16316722 | Msa0492530:five_prime_UTR | 35.0% | |
| !! | CCAGATGATGGAAAAAGAAA+CGG | - | chr3_4:16316737-16316756 | None:intergenic | 35.0% |
| AATTAAGAAAGGGGGAAGAA+AGG | - | chr3_4:16316763-16316782 | None:intergenic | 35.0% | |
| GATGAGAACAGTACCAAAAT+TGG | - | chr3_4:16316798-16316817 | None:intergenic | 35.0% | |
| !! | GAAAGTGTCAGTTATCAAAC+GGG | - | chr3_4:16317105-16317124 | None:intergenic | 35.0% |
| !! | TTTTTCAGTTACGGCTACAA+GGG | - | chr3_4:16317222-16317241 | None:intergenic | 35.0% |
| !!! | TTTTTTCAGTTACGGCTACA+AGG | - | chr3_4:16317223-16317242 | None:intergenic | 35.0% |
| !! | CTGTGTGTTTGTTATCATTG+AGG | + | chr3_4:16317298-16317317 | Msa0492530:intron | 35.0% |
| TTAAATCGCTGTTGTAATGG+CGG | + | chr3_4:16317323-16317342 | Msa0492530:intron | 35.0% | |
| AAGGAATTGTTAGCATCATG+AGG | - | chr3_4:16317449-16317468 | None:intergenic | 35.0% | |
| GATGCTAACAATTCCTTTGT+CGG | + | chr3_4:16317452-16317471 | Msa0492530:intron | 35.0% | |
| ATGCTAACAATTCCTTTGTC+GGG | + | chr3_4:16317453-16317472 | Msa0492530:intron | 35.0% | |
| ! | GATTTGCTTTGGCTTCAATT+GGG | + | chr3_4:16317490-16317509 | Msa0492530:intron | 35.0% |
| !! | CTCTGGATTAGTTAGTTCTT+AGG | + | chr3_4:16317540-16317559 | Msa0492530:intron | 35.0% |
| ATTCAATCATGTGACTCCTT+GGG | + | chr3_4:16317764-16317783 | Msa0492530:intron | 35.0% | |
| TGCCCTAAGAACATTGTTTA+AGG | + | chr3_4:16317845-16317864 | Msa0492530:intron | 35.0% | |
| !! | GAAAATGGGATTTTAGCAGT+TGG | + | chr3_4:16317993-16318012 | Msa0492530:intron | 35.0% |
| !! | GGATTTTAGCAGTTGGAATT+TGG | + | chr3_4:16318000-16318019 | Msa0492530:intron | 35.0% |
| GTAAGGTAGGTAAAGTTTGT+AGG | + | chr3_4:16318110-16318129 | Msa0492530:intron | 35.0% | |
| AAGGTAGGTAAAGTTTGTAG+GGG | + | chr3_4:16318112-16318131 | Msa0492530:intron | 35.0% | |
| AGCAGAAAAATATAGACTCG+GGG | - | chr3_4:16318272-16318291 | None:intergenic | 35.0% | |
| TTTCACCAAAAATAAGCACG+TGG | + | chr3_4:16318713-16318732 | Msa0492530:CDS | 35.0% | |
| AAGATCTATCCGAAGATGAA+GGG | + | chr3_4:16318754-16318773 | Msa0492530:CDS | 35.0% | |
| TTCTTGTGATCTGACAATAC+TGG | - | chr3_4:16319048-16319067 | None:intergenic | 35.0% | |
| ! | TCTTGTTATAGAAAAGCTCG+CGG | + | chr3_4:16319068-16319087 | Msa0492530:CDS | 35.0% |
| GACAAAAAAGGAAAAGCTGA+TGG | + | chr3_4:16319122-16319141 | Msa0492530:CDS | 35.0% | |
| TTGTTACAGCTAGCAGAAAA+GGG | + | chr3_4:16319276-16319295 | Msa0492530:intron | 35.0% | |
| TGTCACACCTGCTAATTATT+TGG | + | chr3_4:16319302-16319321 | Msa0492530:CDS | 35.0% | |
| TTTAACTGTTGCTGTGAACA+TGG | + | chr3_4:16319451-16319470 | Msa0492530:intron | 35.0% | |
| CTACTTCTGATTTCTTTCAG+TGG | + | chr3_4:16319475-16319494 | Msa0492530:intron | 35.0% | |
| ACAAAGAGAGGAGGAAAATT+TGG | - | chr3_4:16319555-16319574 | None:intergenic | 35.0% | |
| !! | GTTTTATACACACTTGTTGC+AGG | + | chr3_4:16319607-16319626 | Msa0492530:intron | 35.0% |
| CTGTCAGTGTTATCAAATAG+TGG | + | chr3_4:16319876-16319895 | Msa0492530:intron | 35.0% | |
| TATAGATGCTACAACCACTA+TGG | - | chr3_4:16319976-16319995 | None:intergenic | 35.0% | |
| ATAGTGGTTGTAGCATCTAT+AGG | + | chr3_4:16319975-16319994 | Msa0492530:intron | 35.0% | |
| TAGTGGTTGTAGCATCTATA+GGG | + | chr3_4:16319976-16319995 | Msa0492530:intron | 35.0% | |
| AAAAAAAATGTGGCAGAGCA+TGG | - | chr3_4:16320146-16320165 | None:intergenic | 35.0% | |
| !! | TTTTAAAGAGGCAGCATGTT+TGG | + | chr3_4:16320223-16320242 | Msa0492530:intron | 35.0% |
| AAATAGAAGACGTAGCATAG+TGG | - | chr3_4:16320327-16320346 | None:intergenic | 35.0% | |
| !! | TAGAGGATAGTGGAAAATAG+TGG | - | chr3_4:16320370-16320389 | None:intergenic | 35.0% |
| GTGTTATCAATAGAGGATAG+TGG | - | chr3_4:16320380-16320399 | None:intergenic | 35.0% | |
| TCACAAACAAATCTTCAGCA+TGG | - | chr3_4:16320425-16320444 | None:intergenic | 35.0% | |
| TGTTGAAAAATAAGAGGGGT+CGG | + | chr3_4:16320503-16320522 | Msa0492530:intron | 35.0% | |
| TGAAACCTAAAACTCTGACA+GGG | - | chr3_4:16320562-16320581 | None:intergenic | 35.0% | |
| ATGAAACCTAAAACTCTGAC+AGG | - | chr3_4:16320563-16320582 | None:intergenic | 35.0% | |
| ! | TCGTTCAGTCAGTTTTTCAT+TGG | + | chr3_4:16320767-16320786 | Msa0492530:intron | 35.0% |
| GTTCTTCAACAGAATTAAGC+AGG | - | chr3_4:16320831-16320850 | None:intergenic | 35.0% | |
| TGTTCAAAGTTCATCCAGTT+TGG | - | chr3_4:16321219-16321238 | None:intergenic | 35.0% | |
| ! | TTTGATAATTAGGGACACGA+TGG | - | chr3_4:16321385-16321404 | None:intergenic | 35.0% |
| CAAGTTCGAGAATAAAGGAT+TGG | + | chr3_4:16321500-16321519 | Msa0492530:CDS | 35.0% | |
| AGTAACGTAATGAGCAGAAA+TGG | - | chr3_4:16321749-16321768 | None:intergenic | 35.0% | |
| ATGGAATTGGAGAAACTTGA+TGG | + | chr3_4:16321774-16321793 | Msa0492530:three_prime_UTR | 35.0% | |
| !! | CCAAGCTTTCGATTACTTTT+CGG | - | chr3_4:16321949-16321968 | None:intergenic | 35.0% |
| ATTATTTCGTCGTAGGGTAT+TGG | + | chr3_4:16322021-16322040 | Msa0492530:three_prime_UTR | 35.0% | |
| !! | GTTTGAGTTGTTAGGGGTTA+AGG | - | chr3_4:16316634-16316653 | None:intergenic | 40.0% |
| ATAACTGTAGAGATGAACGG+CGG | - | chr3_4:16316690-16316709 | None:intergenic | 40.0% | |
| ! | CCGTTTCTTTTTCCATCATC+TGG | + | chr3_4:16316734-16316753 | Msa0492530:five_prime_UTR | 40.0% |
| GAAGAAAGGTTACCAGATGA+TGG | - | chr3_4:16316749-16316768 | None:intergenic | 40.0% | |
| ! | TGTGTTCCTCTCAAGGTATT+AGG | + | chr3_4:16317416-16317435 | Msa0492530:intron | 40.0% |
| TTCGAACCTAATACCTTGAG+AGG | - | chr3_4:16317425-16317444 | None:intergenic | 40.0% | |
| AAGCAAATCCCTATATGGAC+TGG | - | chr3_4:16317479-16317498 | None:intergenic | 40.0% | |
| ! | GTCCATATAGGGATTTGCTT+TGG | + | chr3_4:16317479-16317498 | Msa0492530:intron | 40.0% |
| AGCCAAAGCAAATCCCTATA+TGG | - | chr3_4:16317484-16317503 | None:intergenic | 40.0% | |
| ! | GGATTTGCTTTGGCTTCAAT+TGG | + | chr3_4:16317489-16317508 | Msa0492530:intron | 40.0% |
| !! | GGATTAGTTAGTTCTTAGGC+CGG | + | chr3_4:16317544-16317563 | Msa0492530:intron | 40.0% |
| ! | GTCAAAGCATCCCTAAAAGA+TGG | - | chr3_4:16317687-16317706 | None:intergenic | 40.0% |
| GATTCAATCATGTGACTCCT+TGG | + | chr3_4:16317763-16317782 | Msa0492530:intron | 40.0% | |
| GGGAGGTTTAGAGAAAAACA+AGG | + | chr3_4:16318132-16318151 | Msa0492530:intron | 40.0% | |
| ! | TACTTGACTTTTTACGGCCT+TGG | - | chr3_4:16318509-16318528 | None:intergenic | 40.0% |
| TTAACTTTCTTCTGTCCGTG+TGG | - | chr3_4:16318555-16318574 | None:intergenic | 40.0% | |
| !! | TTCCTCCACGTGCTTATTTT+TGG | - | chr3_4:16318721-16318740 | None:intergenic | 40.0% |
| GAAGATCTATCCGAAGATGA+AGG | + | chr3_4:16318753-16318772 | Msa0492530:CDS | 40.0% | |
| AGATCTATCCGAAGATGAAG+GGG | + | chr3_4:16318755-16318774 | Msa0492530:CDS | 40.0% | |
| ! | GTGAAGGTTGTAAAGCATTC+AGG | + | chr3_4:16318889-16318908 | Msa0492530:CDS | 40.0% |
| ! | AGGTTGTAAAGCATTCAGGA+TGG | + | chr3_4:16318893-16318912 | Msa0492530:CDS | 40.0% |
| ! | GAGTGTTTCTGATGAGTTGT+TGG | + | chr3_4:16318938-16318957 | Msa0492530:CDS | 40.0% |
| ! | TGATGAGTTGTTGGTAAGCT+AGG | + | chr3_4:16318947-16318966 | Msa0492530:intron | 40.0% |
| GATCAAGGGAGAGACAAAAA+AGG | + | chr3_4:16319110-16319129 | Msa0492530:CDS | 40.0% | |
| CTTGTTACAGCTAGCAGAAA+AGG | + | chr3_4:16319275-16319294 | Msa0492530:intron | 40.0% | |
| ! | CTTATAAGTGTCGCGACAAA+AGG | + | chr3_4:16319342-16319361 | Msa0492530:CDS | 40.0% |
| TCATACAAAGCGACAAAGAG+AGG | - | chr3_4:16319567-16319586 | None:intergenic | 40.0% | |
| ! | AAAGCTCAAGTTGCTCAGAA+AGG | + | chr3_4:16319635-16319654 | Msa0492530:CDS | 40.0% |
| ! | AAGCTCAAGTTGCTCAGAAA+GGG | + | chr3_4:16319636-16319655 | Msa0492530:CDS | 40.0% |
| TTTGCATCCCTGTTCTTTGA+GGG | - | chr3_4:16319668-16319687 | None:intergenic | 40.0% | |
| TCAAAGAACAGGGATGCAAA+GGG | + | chr3_4:16319668-16319687 | Msa0492530:CDS | 40.0% | |
| GTGGAATAGCATAGCATTGT+AGG | - | chr3_4:16320351-16320370 | None:intergenic | 40.0% | |
| GTTGAAAAATAAGAGGGGTC+GGG | + | chr3_4:16320504-16320523 | Msa0492530:intron | 40.0% | |
| ! | TGGTTCTATTTGGAGAAGCA+TGG | - | chr3_4:16320538-16320557 | None:intergenic | 40.0% |
| ! | AAGCCTTCTTTTCAGCGTTA+GGG | + | chr3_4:16320703-16320722 | Msa0492530:CDS | 40.0% |
| AACAGAATTAAGCAGGACTC+GGG | - | chr3_4:16320824-16320843 | None:intergenic | 40.0% | |
| CAACAGAATTAAGCAGGACT+CGG | - | chr3_4:16320825-16320844 | None:intergenic | 40.0% | |
| AGCATTTACTTACGGACACT+TGG | + | chr3_4:16320920-16320939 | Msa0492530:intron | 40.0% | |
| GCATTTACTTACGGACACTT+GGG | + | chr3_4:16320921-16320940 | Msa0492530:intron | 40.0% | |
| GCTTAGACAAATTGCCAAAC+TGG | + | chr3_4:16321202-16321221 | Msa0492530:intron | 40.0% | |
| TTGCTTGGATTTGGATATGC+AGG | + | chr3_4:16321405-16321424 | Msa0492530:intron | 40.0% | |
| AGAGGATGAACAACCTTCTT+GGG | + | chr3_4:16321450-16321469 | Msa0492530:CDS | 40.0% | |
| GCTGACAAGTTCGAGAATAA+AGG | + | chr3_4:16321495-16321514 | Msa0492530:CDS | 40.0% | |
| TGAGCAACATGATGAGTACA+AGG | - | chr3_4:16321583-16321602 | None:intergenic | 40.0% | |
| TTCATCGGAACTGCTATCTT+GGG | - | chr3_4:16321647-16321666 | None:intergenic | 40.0% | |
| AGCAGTTCCGATGAAGATTA+AGG | + | chr3_4:16321652-16321671 | Msa0492530:CDS | 40.0% | |
| !! | CGTGTTTCTAGTGGGATAAT+CGG | + | chr3_4:16321702-16321721 | Msa0492530:three_prime_UTR | 40.0% |
| CCGAAAAGTAATCGAAAGCT+TGG | + | chr3_4:16321946-16321965 | Msa0492530:three_prime_UTR | 40.0% | |
| GTTGTTAGGGGTTAAGGGAA+GGG | - | chr3_4:16316628-16316647 | None:intergenic | 45.0% | |
| AGTTGTTAGGGGTTAAGGGA+AGG | - | chr3_4:16316629-16316648 | None:intergenic | 45.0% | |
| TCCTTGATATTGTAACCCCC+AGG | + | chr3_4:16317357-16317376 | Msa0492530:intron | 45.0% | |
| CCTTGATATTGTAACCCCCA+GGG | + | chr3_4:16317358-16317377 | Msa0492530:intron | 45.0% | |
| CTTGATATTGTAACCCCCAG+GGG | + | chr3_4:16317359-16317378 | Msa0492530:intron | 45.0% | |
| GTAGTGTAGGCTTGAGACAT+GGG | + | chr3_4:16317391-16317410 | Msa0492530:intron | 45.0% | |
| !! | CAGTTTTGGCCACCACATTA+AGG | - | chr3_4:16317626-16317645 | None:intergenic | 45.0% |
| !! | ACCGTTCTACTAGTTTGCTG+TGG | + | chr3_4:16317915-16317934 | Msa0492530:intron | 45.0% |
| GCCACAGCAAACTAGTAGAA+CGG | - | chr3_4:16317919-16317938 | None:intergenic | 45.0% | |
| GTAGGTAAAGTTTGTAGGGG+AGG | + | chr3_4:16318115-16318134 | Msa0492530:intron | 45.0% | |
| CATGGCTGAAGAAACACAAG+TGG | + | chr3_4:16318440-16318459 | Msa0492530:exon | 45.0% | |
| GAAACACAAGTGGTTGAGCA+TGG | + | chr3_4:16318450-16318469 | Msa0492530:CDS | 45.0% | |
| TGGGAAAGAGGAAGTTTGGT+AGG | + | chr3_4:16318481-16318500 | Msa0492530:CDS | 45.0% | |
| AGGAAGTTTGGTAGGAACCA+AGG | + | chr3_4:16318489-16318508 | Msa0492530:CDS | 45.0% | |
| ! | TGTGGTGGCTTCATCACTTT+TGG | - | chr3_4:16318537-16318556 | None:intergenic | 45.0% |
| AAAGTGATGAAGCCACCACA+CGG | + | chr3_4:16318537-16318556 | Msa0492530:CDS | 45.0% | |
| TTCTAGTACTCCCAGTAGCA+GGG | - | chr3_4:16318659-16318678 | None:intergenic | 45.0% | |
| !! | TACTGGGAGTACTAGAAGTG+TGG | + | chr3_4:16318662-16318681 | Msa0492530:CDS | 45.0% |
| GTGGCATCTATGAAGACTAG+AGG | + | chr3_4:16318681-16318700 | Msa0492530:CDS | 45.0% | |
| CACCAAAAATAAGCACGTGG+AGG | + | chr3_4:16318716-16318735 | Msa0492530:CDS | 45.0% | |
| TTCTGCTACCCCTTCATCTT+CGG | - | chr3_4:16318766-16318785 | None:intergenic | 45.0% | |
| ! | CTCTGAGGATGAAGATGATG+AGG | + | chr3_4:16318833-16318852 | Msa0492530:CDS | 45.0% |
| TGAGGATGAAGATGATGAGG+AGG | + | chr3_4:16318836-16318855 | Msa0492530:CDS | 45.0% | |
| TATAGAAAAGCTCGCGGAAG+AGG | + | chr3_4:16319074-16319093 | Msa0492530:CDS | 45.0% | |
| TATCTATCGGGTAAGCAGTC+TGG | + | chr3_4:16319235-16319254 | Msa0492530:intron | 45.0% | |
| TGCGCGTCCAAATAATTAGC+AGG | - | chr3_4:16319312-16319331 | None:intergenic | 45.0% | |
| ! | ATAAGTGTCGCGACAAAAGG+AGG | + | chr3_4:16319345-16319364 | Msa0492530:CDS | 45.0% |
| TACAAAGCGACAAAGAGAGG+AGG | - | chr3_4:16319564-16319583 | None:intergenic | 45.0% | |
| TTGCATCCCTGTTCTTTGAG+GGG | - | chr3_4:16319667-16319686 | None:intergenic | 45.0% | |
| CTTTGCATCCCTGTTCTTTG+AGG | - | chr3_4:16319669-16319688 | None:intergenic | 45.0% | |
| CTCAAAGAACAGGGATGCAA+AGG | + | chr3_4:16319667-16319686 | Msa0492530:CDS | 45.0% | |
| TGAGCTGCATACAACCTCTT+TGG | + | chr3_4:16319942-16319961 | Msa0492530:intron | 45.0% | |
| GAGCTGCATACAACCTCTTT+GGG | + | chr3_4:16319943-16319962 | Msa0492530:intron | 45.0% | |
| ATACAACCTCTTTGGGCCTT+TGG | + | chr3_4:16319950-16319969 | Msa0492530:intron | 45.0% | |
| ATCCTCCTCACTGGAAATAG+AGG | - | chr3_4:16320185-16320204 | None:intergenic | 45.0% | |
| ! | CTGACAGGGATGGTTCTATT+TGG | - | chr3_4:16320548-16320567 | None:intergenic | 45.0% |
| ! | ACCATCCCTGTCAGAGTTTT+AGG | + | chr3_4:16320554-16320573 | Msa0492530:intron | 45.0% |
| ACCTAAAACTCTGACAGGGA+TGG | - | chr3_4:16320558-16320577 | None:intergenic | 45.0% | |
| CGCTGAAAAGAAGGCTTCTT+TGG | - | chr3_4:16320700-16320719 | None:intergenic | 45.0% | |
| ! | GAAGCCTTCTTTTCAGCGTT+AGG | + | chr3_4:16320702-16320721 | Msa0492530:CDS | 45.0% |
| CTTCCCTAACGCTGAAAAGA+AGG | - | chr3_4:16320709-16320728 | None:intergenic | 45.0% | |
| ATCACCTTTGCACCAATAGC+TGG | - | chr3_4:16320732-16320751 | None:intergenic | 45.0% | |
| GCCAATGCAAGCACAAACAA+GGG | + | chr3_4:16321427-16321446 | Msa0492530:CDS | 45.0% | |
| ! | TCCCTTGTTTGTGCTTGCAT+TGG | - | chr3_4:16321431-16321450 | None:intergenic | 45.0% |
| GAGAGGATGAACAACCTTCT+TGG | + | chr3_4:16321449-16321468 | Msa0492530:CDS | 45.0% | |
| CATGATGAGTACAAGGTAGC+TGG | - | chr3_4:16321576-16321595 | None:intergenic | 45.0% | |
| TCATCATGTTGCTCAACTGC+AGG | + | chr3_4:16321588-16321607 | Msa0492530:intron | 45.0% | |
| CATCATGTTGCTCAACTGCA+GGG | + | chr3_4:16321589-16321608 | Msa0492530:intron | 45.0% | |
| CTTCATCGGAACTGCTATCT+TGG | - | chr3_4:16321648-16321667 | None:intergenic | 45.0% | |
| !! | AGCATCAGCGTGTTTCTAGT+GGG | + | chr3_4:16321694-16321713 | Msa0492530:three_prime_UTR | 45.0% |
| ! | GGAGAAACTTGATGGCTGAT+TGG | + | chr3_4:16321782-16321801 | Msa0492530:three_prime_UTR | 45.0% |
| ! | AAACTTGATGGCTGATTGGC+TGG | + | chr3_4:16321786-16321805 | Msa0492530:three_prime_UTR | 45.0% |
| !!! | TTTATTTATTTTGATTTTAT+TGG | + | chr3_4:16316919-16316938 | Msa0492530:intron | 5.0% |
| !!! | ATATTATTTTCTTTTTTATT+AGG | + | chr3_4:16321148-16321167 | Msa0492530:intron | 5.0% |
| CCCTGGGGGTTACAATATCA+AGG | - | chr3_4:16317361-16317380 | None:intergenic | 50.0% | |
| TATTGTAACCCCCAGGGGTT+TGG | + | chr3_4:16317364-16317383 | Msa0492530:intron | 50.0% | |
| GGTAGTGTAGGCTTGAGACA+TGG | + | chr3_4:16317390-16317409 | Msa0492530:intron | 50.0% | |
| ! | ATGGGAGTGTGTTCCTCTCA+AGG | + | chr3_4:16317409-16317428 | Msa0492530:intron | 50.0% |
| !! | TATATGGACTGGCCCGACAA+AGG | - | chr3_4:16317468-16317487 | None:intergenic | 50.0% |
| TTTGTCGGGCCAGTCCATAT+AGG | + | chr3_4:16317467-16317486 | Msa0492530:intron | 50.0% | |
| TTGTCGGGCCAGTCCATATA+GGG | + | chr3_4:16317468-16317487 | Msa0492530:intron | 50.0% | |
| TCATGTGACTCCTTGGGTCA+TGG | + | chr3_4:16317770-16317789 | Msa0492530:intron | 50.0% | |
| ATTGAACAGGCCATGACCCA+AGG | - | chr3_4:16317783-16317802 | None:intergenic | 50.0% | |
| GTTGAGCATGGAAGTGAGCT+GGG | + | chr3_4:16318462-16318481 | Msa0492530:CDS | 50.0% | |
| ATGGAAGTGAGCTGGGAAAG+AGG | + | chr3_4:16318469-16318488 | Msa0492530:CDS | 50.0% | |
| GAGCTGGGAAAGAGGAAGTT+TGG | + | chr3_4:16318477-16318496 | Msa0492530:CDS | 50.0% | |
| ACTTTCTTCTGTCCGTGTGG+TGG | - | chr3_4:16318552-16318571 | None:intergenic | 50.0% | |
| TCTAGTACTCCCAGTAGCAG+GGG | - | chr3_4:16318658-16318677 | None:intergenic | 50.0% | |
| CTTCTAGTACTCCCAGTAGC+AGG | - | chr3_4:16318660-16318679 | None:intergenic | 50.0% | |
| GAAGATGAAGGGGTAGCAGA+AGG | + | chr3_4:16318765-16318784 | Msa0492530:CDS | 50.0% | |
| GAGACAGAGCGCAAGATCAA+GGG | + | chr3_4:16319096-16319115 | Msa0492530:CDS | 50.0% | |
| ! | TCAAGTTGCTCAGAAAGGGC+TGG | + | chr3_4:16319640-16319659 | Msa0492530:CDS | 50.0% |
| GCTACAACCACTATGGCCAA+AGG | - | chr3_4:16319969-16319988 | None:intergenic | 50.0% | |
| CTCACTGGAAATAGAGGAGG+AGG | - | chr3_4:16320179-16320198 | None:intergenic | 50.0% | |
| CTCCTCCTCTATTTCCAGTG+AGG | + | chr3_4:16320177-16320196 | Msa0492530:intron | 50.0% | |
| CTCCTCACTGGAAATAGAGG+AGG | - | chr3_4:16320182-16320201 | None:intergenic | 50.0% | |
| CTCCTCTATTTCCAGTGAGG+AGG | + | chr3_4:16320180-16320199 | Msa0492530:intron | 50.0% | |
| TGAAGGATCATCCTCCTCAC+TGG | - | chr3_4:16320194-16320213 | None:intergenic | 50.0% | |
| AAATAAGAGGGGTCGGGACT+TGG | + | chr3_4:16320510-16320529 | Msa0492530:intron | 50.0% | |
| AATAAGAGGGGTCGGGACTT+GGG | + | chr3_4:16320511-16320530 | Msa0492530:intron | 50.0% | |
| GAAGCCAGCTATTGGTGCAA+AGG | + | chr3_4:16320725-16320744 | Msa0492530:CDS | 50.0% | |
| GGCCAATGCAAGCACAAACA+AGG | + | chr3_4:16321426-16321445 | Msa0492530:intron | 50.0% | |
| TGCAAGCACAAACAAGGGAG+AGG | + | chr3_4:16321432-16321451 | Msa0492530:CDS | 50.0% | |
| !! | CAGCATCAGCGTGTTTCTAG+TGG | + | chr3_4:16321693-16321712 | Msa0492530:three_prime_UTR | 50.0% |
| ATGAACGGCGGAAGTGACAG+CGG | - | chr3_4:16316678-16316697 | None:intergenic | 55.0% | |
| CTTCAATTGGGCCCTGCTAG+TGG | + | chr3_4:16317502-16317521 | Msa0492530:intron | 55.0% | |
| AATTGGGCCCTGCTAGTGGA+CGG | + | chr3_4:16317506-16317525 | Msa0492530:intron | 55.0% | |
| AATCCCACCGTCCACTAGCA+GGG | - | chr3_4:16317516-16317535 | None:intergenic | 55.0% | |
| GGTTGAGCATGGAAGTGAGC+TGG | + | chr3_4:16318461-16318480 | Msa0492530:CDS | 55.0% | |
| AGACAACTGCCCCTGCTACT+GGG | + | chr3_4:16318646-16318665 | Msa0492530:CDS | 55.0% | |
| GAGGAGGATGAGATTCAGCC+AGG | + | chr3_4:16318852-16318871 | Msa0492530:CDS | 55.0% | |
| GGAGACAGAGCGCAAGATCA+AGG | + | chr3_4:16319095-16319114 | Msa0492530:CDS | 55.0% | |
| GCTGGACCCCTCAAAGAACA+GGG | + | chr3_4:16319658-16319677 | Msa0492530:CDS | 55.0% | |
| CTATGGCCAAAGGCCCAAAG+AGG | - | chr3_4:16319959-16319978 | None:intergenic | 55.0% | |
| CTTTGGGCCTTTGGCCATAG+TGG | + | chr3_4:16319959-16319978 | Msa0492530:intron | 55.0% | |
| GCGTTAGGGAAGCCAGCTAT+TGG | + | chr3_4:16320717-16320736 | Msa0492530:CDS | 55.0% | |
| ! | TCGCGTAATGGAGCCCAAGA+AGG | - | chr3_4:16321466-16321485 | None:intergenic | 55.0% |
| !! | ATGGCTGATTGGCTGGCCTT+TGG | + | chr3_4:16321793-16321812 | Msa0492530:three_prime_UTR | 55.0% |
| GAAGTGACAGCGGCTGGGAA+AGG | - | chr3_4:16316668-16316687 | None:intergenic | 60.0% | |
| ACTACCACGCCAAACCCCTG+GGG | - | chr3_4:16317376-16317395 | None:intergenic | 60.0% | |
| CACTACCACGCCAAACCCCT+GGG | - | chr3_4:16317377-16317396 | None:intergenic | 60.0% | |
| ACACTACCACGCCAAACCCC+TGG | - | chr3_4:16317378-16317397 | None:intergenic | 60.0% | |
| ! | GGGGTTTGGCGTGGTAGTGT+AGG | + | chr3_4:16317378-16317397 | Msa0492530:intron | 60.0% |
| CAATCCCACCGTCCACTAGC+AGG | - | chr3_4:16317517-16317536 | None:intergenic | 60.0% | |
| ! | CTGCTAGTGGACGGTGGGAT+TGG | + | chr3_4:16317515-16317534 | Msa0492530:intron | 60.0% |
| !! | GGACGGTGGGATTGGTTCTC+TGG | + | chr3_4:16317523-16317542 | Msa0492530:intron | 60.0% |
| GAGACAACTGCCCCTGCTAC+TGG | + | chr3_4:16318645-16318664 | Msa0492530:CDS | 60.0% | |
| GGCTGGACCCCTCAAAGAAC+AGG | + | chr3_4:16319657-16319676 | Msa0492530:CDS | 60.0% | |
| TAACCCCCAGGGGTTTGGCG+TGG | + | chr3_4:16317369-16317388 | Msa0492530:intron | 65.0% | |
| CTACCACGCCAAACCCCTGG+GGG | - | chr3_4:16317375-16317394 | None:intergenic | 65.0% | |
| CGGCGGAAGTGACAGCGGCT+GGG | - | chr3_4:16316673-16316692 | None:intergenic | 70.0% | |
| ACGGCGGAAGTGACAGCGGC+TGG | - | chr3_4:16316674-16316693 | None:intergenic | 70.0% | |
| ! | TGGGCCCTGCTAGTGGACGG+TGG | + | chr3_4:16317509-16317528 | Msa0492530:intron | 70.0% |
| ! | GGGCCCTGCTAGTGGACGGT+GGG | + | chr3_4:16317510-16317529 | Msa0492530:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 16316617 | 16322128 | 16316617 | ID=Msa0492530;Name=Msa0492530 |
| chr3_4 | mRNA | 16316617 | 16322128 | 16316617 | ID=Msa0492530-mRNA-1;Parent=Msa0492530;Name=Msa0492530-mRNA-1;_AED=0.05;_eAED=0.05;_QI=159|1|1|1|0.87|0.77|9|456|340 |
| chr3_4 | exon | 16316617 | 16316755 | 16316617 | ID=Msa0492530-mRNA-1:exon:4699;Parent=Msa0492530-mRNA-1 |
| chr3_4 | exon | 16318421 | 16318959 | 16318421 | ID=Msa0492530-mRNA-1:exon:4700;Parent=Msa0492530-mRNA-1 |
| chr3_4 | exon | 16319042 | 16319143 | 16319042 | ID=Msa0492530-mRNA-1:exon:4701;Parent=Msa0492530-mRNA-1 |
| chr3_4 | exon | 16319285 | 16319366 | 16319285 | ID=Msa0492530-mRNA-1:exon:4702;Parent=Msa0492530-mRNA-1 |
| chr3_4 | exon | 16319495 | 16319514 | 16319495 | ID=Msa0492530-mRNA-1:exon:4703;Parent=Msa0492530-mRNA-1 |
| chr3_4 | exon | 16319629 | 16319689 | 16319629 | ID=Msa0492530-mRNA-1:exon:4704;Parent=Msa0492530-mRNA-1 |
| chr3_4 | exon | 16320682 | 16320746 | 16320682 | ID=Msa0492530-mRNA-1:exon:4705;Parent=Msa0492530-mRNA-1 |
| chr3_4 | exon | 16321427 | 16321537 | 16321427 | ID=Msa0492530-mRNA-1:exon:4706;Parent=Msa0492530-mRNA-1 |
| chr3_4 | exon | 16321610 | 16322128 | 16321610 | ID=Msa0492530-mRNA-1:exon:4707;Parent=Msa0492530-mRNA-1 |
| chr3_4 | five_prime_UTR | 16316617 | 16316755 | 16316617 | ID=Msa0492530-mRNA-1:five_prime_utr;Parent=Msa0492530-mRNA-1 |
| chr3_4 | five_prime_UTR | 16318421 | 16318440 | 16318421 | ID=Msa0492530-mRNA-1:five_prime_utr;Parent=Msa0492530-mRNA-1 |
| chr3_4 | CDS | 16318441 | 16318959 | 16318441 | ID=Msa0492530-mRNA-1:cds;Parent=Msa0492530-mRNA-1 |
| chr3_4 | CDS | 16319042 | 16319143 | 16319042 | ID=Msa0492530-mRNA-1:cds;Parent=Msa0492530-mRNA-1 |
| chr3_4 | CDS | 16319285 | 16319366 | 16319285 | ID=Msa0492530-mRNA-1:cds;Parent=Msa0492530-mRNA-1 |
| chr3_4 | CDS | 16319495 | 16319514 | 16319495 | ID=Msa0492530-mRNA-1:cds;Parent=Msa0492530-mRNA-1 |
| chr3_4 | CDS | 16319629 | 16319689 | 16319629 | ID=Msa0492530-mRNA-1:cds;Parent=Msa0492530-mRNA-1 |
| chr3_4 | CDS | 16320682 | 16320746 | 16320682 | ID=Msa0492530-mRNA-1:cds;Parent=Msa0492530-mRNA-1 |
| chr3_4 | CDS | 16321427 | 16321537 | 16321427 | ID=Msa0492530-mRNA-1:cds;Parent=Msa0492530-mRNA-1 |
| chr3_4 | CDS | 16321610 | 16321672 | 16321610 | ID=Msa0492530-mRNA-1:cds;Parent=Msa0492530-mRNA-1 |
| chr3_4 | three_prime_UTR | 16321673 | 16322128 | 16321673 | ID=Msa0492530-mRNA-1:three_prime_utr;Parent=Msa0492530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
