Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0345390 | XP_039688223.1 | 95.029 | 342 | 15 | 1 | 1 | 340 | 1 | 342 | 0.0 | 641 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0345390 | A0A396IKZ4 | 95.029 | 342 | 15 | 1 | 1 | 340 | 1 | 342 | 0.0 | 641 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006040 | Msa0345390 | 0.830327 | 3.126040e-55 | -8.615850e-47 |
| Msa0011960 | Msa0345390 | 0.853369 | 2.500963e-61 | -8.615850e-47 |
| Msa0015930 | Msa0345390 | 0.816840 | 4.494751e-52 | -8.615850e-47 |
| Msa0025730 | Msa0345390 | 0.832806 | 7.660871e-56 | -8.615850e-47 |
| Msa0027260 | Msa0345390 | 0.815216 | 1.035711e-51 | -8.615850e-47 |
| Msa0028660 | Msa0345390 | 0.811590 | 6.488882e-51 | -8.615850e-47 |
| Msa0032580 | Msa0345390 | 0.833117 | 6.412961e-56 | -8.615850e-47 |
| Msa0033110 | Msa0345390 | 0.822010 | 2.978053e-53 | -8.615850e-47 |
| Msa0033260 | Msa0345390 | 0.816978 | 4.184548e-52 | -8.615850e-47 |
| Msa0033950 | Msa0345390 | 0.841745 | 3.943427e-58 | -8.615850e-47 |
| Msa0034030 | Msa0345390 | 0.834739 | 2.517655e-56 | -8.615850e-47 |
| Msa0036160 | Msa0345390 | 0.809055 | 2.285737e-50 | -8.615850e-47 |
| Msa0040690 | Msa0345390 | 0.819245 | 1.285148e-52 | -8.615850e-47 |
| Msa0043660 | Msa0345390 | 0.876382 | 1.460062e-68 | -8.615850e-47 |
| Msa0047160 | Msa0345390 | 0.853343 | 2.544195e-61 | -8.615850e-47 |
| Msa0052770 | Msa0345390 | 0.825312 | 5.020378e-54 | -8.615850e-47 |
| Msa0054750 | Msa0345390 | 0.833638 | 4.753601e-56 | -8.615850e-47 |
| Msa0055180 | Msa0345390 | 0.817756 | 2.795299e-52 | -8.615850e-47 |
| Msa0058300 | Msa0345390 | 0.808783 | 2.613812e-50 | -8.615850e-47 |
| Msa0059040 | Msa0345390 | 0.818129 | 2.302539e-52 | -8.615850e-47 |
| Msa0059110 | Msa0345390 | 0.829969 | 3.822051e-55 | -8.615850e-47 |
| Msa0061080 | Msa0345390 | 0.808725 | 2.689684e-50 | -8.615850e-47 |
| Msa0063530 | Msa0345390 | 0.805794 | 1.123896e-49 | -8.615850e-47 |
| Msa0086180 | Msa0345390 | 0.808380 | 3.186324e-50 | -8.615850e-47 |
| Msa0090520 | Msa0345390 | 0.801541 | 8.578521e-49 | -8.615850e-47 |
| Msa0091410 | Msa0345390 | 0.819528 | 1.107544e-52 | -8.615850e-47 |
| Msa0094470 | Msa0345390 | 0.852485 | 4.474980e-61 | -8.615850e-47 |
| Msa0097780 | Msa0345390 | 0.819493 | 1.128097e-52 | -8.615850e-47 |
| Msa0100740 | Msa0345390 | 0.810945 | 8.954244e-51 | -8.615850e-47 |
| Msa0105620 | Msa0345390 | 0.825466 | 4.617027e-54 | -8.615850e-47 |
| Msa0112770 | Msa0345390 | 0.803513 | 3.363583e-49 | -8.615850e-47 |
| Msa0115400 | Msa0345390 | 0.816251 | 6.088248e-52 | -8.615850e-47 |
| Msa0127020 | Msa0345390 | 0.804072 | 2.574403e-49 | -8.615850e-47 |
| Msa0128050 | Msa0345390 | 0.817664 | 2.932373e-52 | -8.615850e-47 |
| Msa0137550 | Msa0345390 | 0.870301 | 1.618010e-66 | -8.615850e-47 |
| Msa0137990 | Msa0345390 | 0.801219 | 9.981347e-49 | -8.615850e-47 |
| Msa0145730 | Msa0345390 | 0.803890 | 2.808910e-49 | -8.615850e-47 |
| Msa0150820 | Msa0345390 | 0.808152 | 3.563727e-50 | -8.615850e-47 |
| Msa0156370 | Msa0345390 | 0.820924 | 5.304566e-53 | -8.615850e-47 |
| Msa0159170 | Msa0345390 | 0.837537 | 4.902514e-57 | -8.615850e-47 |
| Msa0160550 | Msa0345390 | 0.815126 | 1.084274e-51 | -8.615850e-47 |
| Msa0162130 | Msa0345390 | 0.821867 | 3.213212e-53 | -8.615850e-47 |
| Msa0165660 | Msa0345390 | 0.820267 | 7.506967e-53 | -8.615850e-47 |
| Msa0168230 | Msa0345390 | 0.805367 | 1.381725e-49 | -8.615850e-47 |
| Msa0172970 | Msa0345390 | 0.825160 | 5.452416e-54 | -8.615850e-47 |
| Msa0183900 | Msa0345390 | 0.800310 | 1.530297e-48 | -8.615850e-47 |
| Msa0189300 | Msa0345390 | 0.846708 | 1.833355e-59 | -8.615850e-47 |
| Msa0189520 | Msa0345390 | 0.802656 | 5.058914e-49 | -8.615850e-47 |
| Msa0214710 | Msa0345390 | 0.806571 | 7.712243e-50 | -8.615850e-47 |
| Msa0220720 | Msa0345390 | 0.827836 | 1.255404e-54 | -8.615850e-47 |
| Msa0228070 | Msa0345390 | 0.808769 | 2.631946e-50 | -8.615850e-47 |
| Msa0231660 | Msa0345390 | 0.838459 | 2.840882e-57 | -8.615850e-47 |
| Msa0262310 | Msa0345390 | 0.834137 | 3.566822e-56 | -8.615850e-47 |
| Msa0279220 | Msa0345390 | 0.837392 | 5.342252e-57 | -8.615850e-47 |
| Msa0279240 | Msa0345390 | 0.860031 | 2.741907e-63 | -8.615850e-47 |
| Msa0299870 | Msa0345390 | 0.805337 | 1.401612e-49 | -8.615850e-47 |
| Msa0309750 | Msa0345390 | 0.846228 | 2.477918e-59 | -8.615850e-47 |
| Msa0318980 | Msa0345390 | 0.844595 | 6.859053e-59 | -8.615850e-47 |
| Msa0337240 | Msa0345390 | 0.820150 | 7.986831e-53 | -8.615850e-47 |
| Msa0337650 | Msa0345390 | 0.837252 | 5.801736e-57 | -8.615850e-47 |
| Msa0344540 | Msa0345390 | 0.803455 | 3.457487e-49 | -8.615850e-47 |
| Msa0345350 | Msa0345390 | 0.947604 | 4.868306e-106 | -8.615850e-47 |
| Msa0345390 | Msa0366890 | 0.830103 | 3.545976e-55 | -8.615850e-47 |
| Msa0345390 | Msa0383800 | 0.822629 | 2.139017e-53 | -8.615850e-47 |
| Msa0345390 | Msa0385580 | 0.834209 | 3.421628e-56 | -8.615850e-47 |
| Msa0345390 | Msa0388700 | 0.861852 | 7.667632e-64 | -8.615850e-47 |
| Msa0345390 | Msa0395890 | 0.800013 | 1.758857e-48 | -8.615850e-47 |
| Msa0345390 | Msa0397540 | 0.884354 | 2.059667e-71 | -8.615850e-47 |
| Msa0345390 | Msa0434180 | 0.812371 | 4.385854e-51 | -8.615850e-47 |
| Msa0345390 | Msa0447220 | 0.817314 | 3.516634e-52 | -8.615850e-47 |
| Msa0345390 | Msa0458060 | 0.809610 | 1.737753e-50 | -8.615850e-47 |
| Msa0345390 | Msa0465550 | 0.802429 | 5.634792e-49 | -8.615850e-47 |
| Msa0345390 | Msa0482130 | 0.849484 | 3.139930e-60 | -8.615850e-47 |
| Msa0345390 | Msa0492530 | 0.851328 | 9.533614e-61 | -8.615850e-47 |
| Msa0345390 | Msa0493410 | 0.816255 | 6.077754e-52 | -8.615850e-47 |
| Msa0345390 | Msa0497210 | 0.819575 | 1.080537e-52 | -8.615850e-47 |
| Msa0345390 | Msa0534900 | 0.807584 | 4.707053e-50 | -8.615850e-47 |
| Msa0345390 | Msa0542090 | 0.841529 | 4.497587e-58 | -8.615850e-47 |
| Msa0345390 | Msa0542130 | 0.841998 | 3.380571e-58 | -8.615850e-47 |
| Msa0345390 | Msa0548240 | 0.809703 | 1.659431e-50 | -8.615850e-47 |
| Msa0345390 | Msa0554290 | 0.806222 | 9.132987e-50 | -8.615850e-47 |
| Msa0345390 | Msa0555450 | 0.826261 | 2.988501e-54 | -8.615850e-47 |
| Msa0345390 | Msa0566100 | 0.820021 | 8.547585e-53 | -8.615850e-47 |
| Msa0345390 | Msa0581280 | 0.824263 | 8.875017e-54 | -8.615850e-47 |
| Msa0345390 | Msa0592440 | 0.819536 | 1.103202e-52 | -8.615850e-47 |
| Msa0345390 | Msa0605000 | 0.824526 | 7.695931e-54 | -8.615850e-47 |
| Msa0345390 | Msa0605650 | 0.804826 | 1.793183e-49 | -8.615850e-47 |
| Msa0345390 | Msa0615440 | 0.807050 | 6.108830e-50 | -8.615850e-47 |
| Msa0345390 | Msa0615490 | 0.808833 | 2.550096e-50 | -8.615850e-47 |
| Msa0345390 | Msa0620890 | 0.822376 | 2.448607e-53 | -8.615850e-47 |
| Msa0345390 | Msa0631350 | 0.809231 | 2.096016e-50 | -8.615850e-47 |
| Msa0345390 | Msa0643560 | 0.802403 | 5.704211e-49 | -8.615850e-47 |
| Msa0345390 | Msa0646580 | 0.808647 | 2.795104e-50 | -8.615850e-47 |
| Msa0345390 | Msa0647500 | 0.824346 | 8.482828e-54 | -8.615850e-47 |
| Msa0345390 | Msa0648780 | 0.809305 | 2.020890e-50 | -8.615850e-47 |
| Msa0345390 | Msa0660490 | 0.839720 | 1.338168e-57 | -8.615850e-47 |
| Msa0345390 | Msa0661210 | 0.831078 | 2.047000e-55 | -8.615850e-47 |
| Msa0345390 | Msa0661300 | 0.813233 | 2.839756e-51 | -8.615850e-47 |
| Msa0345390 | Msa0685140 | 0.836681 | 8.116649e-57 | -8.615850e-47 |
| Msa0345390 | Msa0689260 | 0.841766 | 3.893461e-58 | -8.615850e-47 |
| Msa0345390 | Msa0691900 | 0.816142 | 6.441445e-52 | -8.615850e-47 |
| Msa0345390 | Msa0692830 | 0.832218 | 1.071816e-55 | -8.615850e-47 |
| Msa0345390 | Msa0692950 | 0.825766 | 3.918202e-54 | -8.615850e-47 |
| Msa0345390 | Msa0698490 | 0.810713 | 1.005028e-50 | -8.615850e-47 |
| Msa0345390 | Msa0698540 | 0.825899 | 3.644920e-54 | -8.615850e-47 |
| Msa0345390 | Msa0698660 | 0.808477 | 3.038797e-50 | -8.615850e-47 |
| Msa0345390 | Msa0709500 | 0.815300 | 9.922349e-52 | -8.615850e-47 |
| Msa0345390 | Msa0711780 | 0.841132 | 5.719719e-58 | -8.615850e-47 |
| Msa0345390 | Msa0715650 | 0.841457 | 4.696890e-58 | -8.615850e-47 |
| Msa0345390 | Msa0715700 | 0.818965 | 1.488343e-52 | -8.615850e-47 |
| Msa0345390 | Msa0719420 | 0.842932 | 1.912089e-58 | -8.615850e-47 |
| Msa0345390 | Msa0719610 | 0.803457 | 3.454893e-49 | -8.615850e-47 |
| Msa0345390 | Msa0722020 | 0.801219 | 9.984907e-49 | -8.615850e-47 |
| Msa0345390 | Msa0741230 | 0.833186 | 6.162790e-56 | -8.615850e-47 |
| Msa0345390 | Msa0763330 | 0.829385 | 5.302107e-55 | -8.615850e-47 |
| Msa0345390 | Msa0772480 | 0.839235 | 1.788740e-57 | -8.615850e-47 |
| Msa0345390 | Msa0784860 | 0.817748 | 2.806856e-52 | -8.615850e-47 |
| Msa0345390 | Msa0788850 | 0.808361 | 3.215832e-50 | -8.615850e-47 |
| Msa0345390 | Msa0789680 | 0.847988 | 8.158937e-60 | -8.615850e-47 |
| Msa0345390 | Msa0790850 | 0.822232 | 2.644700e-53 | -8.615850e-47 |
| Msa0345390 | Msa0794670 | 0.840152 | 1.032964e-57 | -8.615850e-47 |
| Msa0345390 | Msa0795820 | 0.803395 | 3.558655e-49 | -8.615850e-47 |
| Msa0345390 | Msa0798440 | 0.845159 | 4.832575e-59 | -8.615850e-47 |
| Msa0345390 | Msa0802410 | 0.856822 | 2.480603e-62 | -8.615850e-47 |
| Msa0345390 | Msa0818750 | 0.807745 | 4.349308e-50 | -8.615850e-47 |
| Msa0345390 | Msa0830540 | 0.859361 | 4.361345e-63 | -8.615850e-47 |
| Msa0345390 | Msa0861860 | 0.836721 | 7.925176e-57 | -8.615850e-47 |
| Msa0345390 | Msa0867120 | 0.808450 | 3.078546e-50 | -8.615850e-47 |
| Msa0345390 | Msa0867730 | 0.801095 | 1.058382e-48 | -8.615850e-47 |
| Msa0345390 | Msa0876810 | 0.805675 | 1.190261e-49 | -8.615850e-47 |
| Msa0345390 | Msa0887250 | 0.851309 | 9.649173e-61 | -8.615850e-47 |
| Msa0345390 | Msa0900110 | 0.813669 | 2.277439e-51 | -8.615850e-47 |
| Msa0345390 | Msa0902760 | 0.800637 | 1.312986e-48 | -8.615850e-47 |
| Msa0345390 | Msa0945440 | 0.832411 | 9.597383e-56 | -8.615850e-47 |
| Msa0345390 | Msa0966010 | 0.810583 | 1.072718e-50 | -8.615850e-47 |
| Msa0345390 | Msa0969340 | 0.800542 | 1.372520e-48 | -8.615850e-47 |
| Msa0345390 | Msa0969630 | 0.818820 | 1.605894e-52 | -8.615850e-47 |
| Msa0345390 | Msa0987370 | 0.836146 | 1.110392e-56 | -8.615850e-47 |
| Msa0345390 | Msa0989540 | 0.847814 | 9.115436e-60 | -8.615850e-47 |
| Msa0345390 | Msa0999970 | 0.811312 | 7.456891e-51 | -8.615850e-47 |
| Msa0345390 | Msa1006840 | 0.814690 | 1.355256e-51 | -8.615850e-47 |
| Msa0345390 | Msa1008720 | 0.803545 | 3.313006e-49 | -8.615850e-47 |
| Msa0345390 | Msa1009820 | 0.834953 | 2.223986e-56 | -8.615850e-47 |
| Msa0345390 | Msa1030620 | 0.826906 | 2.098142e-54 | -8.615850e-47 |
| Msa0345390 | Msa1034000 | 0.807711 | 4.423371e-50 | -8.615850e-47 |
| Msa0345390 | Msa1051200 | 0.850741 | 1.395229e-60 | -8.615850e-47 |
| Msa0345390 | Msa1060260 | 0.801918 | 7.177822e-49 | -8.615850e-47 |
| Msa0345390 | Msa1077030 | 0.831657 | 1.474586e-55 | -8.615850e-47 |
| Msa0345390 | Msa1081930 | 0.821619 | 3.666755e-53 | -8.615850e-47 |
| Msa0345390 | Msa1084470 | 0.836951 | 6.925519e-57 | -8.615850e-47 |
| Msa0345390 | Msa1087710 | 0.803191 | 3.921256e-49 | -8.615850e-47 |
| Msa0345390 | Msa1091940 | 0.842548 | 2.418222e-58 | -8.615850e-47 |
| Msa0345390 | Msa1093530 | 0.800041 | 1.735993e-48 | -8.615850e-47 |
| Msa0345390 | Msa1104140 | 0.805071 | 1.593253e-49 | -8.615850e-47 |
| Msa0345390 | Msa1137700 | 0.856436 | 3.222429e-62 | -8.615850e-47 |
| Msa0345390 | Msa1138880 | 0.843786 | 1.131274e-58 | -8.615850e-47 |
| Msa0345390 | Msa1160590 | 0.870579 | 1.311574e-66 | -8.615850e-47 |
| Msa0345390 | Msa1171360 | 0.814751 | 1.313651e-51 | -8.615850e-47 |
| Msa0345390 | Msa1173140 | 0.824227 | 9.046056e-54 | -8.615850e-47 |
| Msa0345390 | Msa1181250 | 0.877414 | 6.407883e-69 | -8.615850e-47 |
| Msa0345390 | Msa1181330 | 0.872568 | 2.877256e-67 | -8.615850e-47 |
| Msa0345390 | Msa1208880 | 0.804117 | 2.519541e-49 | -8.615850e-47 |
| Msa0345390 | Msa1209200 | 0.824177 | 9.295927e-54 | -8.615850e-47 |
| Msa0345390 | Msa1209260 | 0.846369 | 2.268795e-59 | -8.615850e-47 |
| Msa0345390 | Msa1209760 | 0.827597 | 1.432894e-54 | -8.615850e-47 |
| Msa0345390 | Msa1217470 | 0.804333 | 2.271733e-49 | -8.615850e-47 |
| Msa0345390 | Msa1218500 | 0.800284 | 1.549202e-48 | -8.615850e-47 |
| Msa0345390 | Msa1224810 | 0.827096 | 1.888734e-54 | -8.615850e-47 |
| Msa0345390 | Msa1231840 | 0.817385 | 3.389795e-52 | -8.615850e-47 |
| Msa0345390 | Msa1237940 | 0.817776 | 2.767015e-52 | -8.615850e-47 |
| Msa0345390 | Msa1245930 | 0.803314 | 3.698151e-49 | -8.615850e-47 |
| Msa0345390 | Msa1254730 | 0.807680 | 4.491465e-50 | -8.615850e-47 |
| Msa0345390 | Msa1259060 | 0.806134 | 9.532680e-50 | -8.615850e-47 |
| Msa0345390 | Msa1260130 | 0.810304 | 1.231937e-50 | -8.615850e-47 |
| Msa0345390 | Msa1265630 | 0.852556 | 4.273141e-61 | -8.615850e-47 |
| Msa0345390 | Msa1302380 | 0.810169 | 1.317170e-50 | -8.615850e-47 |
| Msa0345390 | Msa1332590 | 0.838626 | 2.571948e-57 | -8.615850e-47 |
| Msa0345390 | Msa1351540 | 0.802683 | 4.993079e-49 | -8.615850e-47 |
| Msa0345390 | Msa1356440 | 0.804460 | 2.137191e-49 | -8.615850e-47 |
| Msa0345390 | Msa1358250 | 0.845395 | 4.172323e-59 | -8.615850e-47 |
| Msa0345390 | Msa1359630 | 0.830940 | 2.212146e-55 | -8.615850e-47 |
| Msa0345390 | Msa1360140 | 0.804186 | 2.438064e-49 | -8.615850e-47 |
| Msa0345390 | Msa1386780 | 0.812856 | 3.434917e-51 | -8.615850e-47 |
| Msa0345390 | Msa1392780 | 0.848670 | 5.285096e-60 | -8.615850e-47 |
| Msa0345390 | Msa1394290 | 0.860313 | 2.252728e-63 | -8.615850e-47 |
| Msa0345390 | Msa1400220 | 0.841041 | 6.044084e-58 | -8.615850e-47 |
| Msa0345390 | Msa1400580 | 0.813412 | 2.593618e-51 | -8.615850e-47 |
| Msa0345390 | Msa1419870 | 0.866432 | 2.864295e-65 | -8.615850e-47 |
| Msa0345390 | Msa1432420 | 0.825801 | 3.844127e-54 | -8.615850e-47 |
| Msa0345390 | Msa1436520 | 0.814542 | 1.460975e-51 | -8.615850e-47 |
| Msa0345390 | Msa1439550 | 0.812108 | 5.005148e-51 | -8.615850e-47 |
| Msa0345390 | Msa1444310 | 0.826905 | 2.099192e-54 | -8.615850e-47 |
| Msa0345390 | Msa1454480 | 0.810148 | 1.331233e-50 | -8.615850e-47 |
| Msa0345390 | Msa1457920 | 0.861323 | 1.111838e-63 | -8.615850e-47 |
| Msa0345390 | Msa1465960 | 0.814267 | 1.680694e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0345390 | MtrunA17_Chr3g0085271 | 95.029 | 342 | 15 | 1 | 1 | 340 | 1 | 342 | 0.0 | 641 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0345390 | AT5G48240.1 | 47.385 | 325 | 137 | 8 | 16 | 339 | 18 | 309 | 6.40e-79 | 244 |
| Msa0345390 | AT5G48240.3 | 42.391 | 368 | 139 | 8 | 16 | 339 | 18 | 356 | 3.11e-72 | 228 |
| Msa0345390 | AT5G48240.2 | 44.898 | 294 | 120 | 7 | 16 | 308 | 18 | 270 | 1.67e-60 | 196 |
Find 109 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATAGTAATAGACTATTTA+TGG | 0.119328 | 3_1:+4625107 | Msa0345390:three_prime_UTR |
| TGTCACACCTGCTAATTATT+TGG | 0.128361 | 3_1:+4622464 | Msa0345390:CDS |
| CGCTGAAAAGAAGGCTTCTT+TGG | 0.194609 | 3_1:-4623860 | None:intergenic |
| CTTTATTATCCAATTGTATT+AGG | 0.230112 | 3_1:+4625073 | Msa0345390:three_prime_UTR |
| ATAAAAGTTCCTCATCAAAA+TGG | 0.262718 | 3_1:-4625176 | None:intergenic |
| TCAGTGAACAAATTCAAAAT+TGG | 0.269250 | 3_1:-4625018 | None:intergenic |
| CTACCAAACTTCCTCTTTCC+CGG | 0.300063 | 3_1:-4621642 | None:intergenic |
| TGTGGTGGCTTCATCACTTT+TGG | 0.308341 | 3_1:-4621696 | None:intergenic |
| CTTCATCGGAACTGCTATCT+TGG | 0.315922 | 3_1:-4624838 | None:intergenic |
| GTGAAGGTTGTAAAGCATTC+AGG | 0.319257 | 3_1:+4622051 | Msa0345390:CDS |
| TTGAATTATAAAACAATTCA+TGG | 0.322795 | 3_1:+4621584 | Msa0345390:exon |
| AGCAGTTCCGATGAAGATTA+AGG | 0.322931 | 3_1:+4624845 | Msa0345390:CDS |
| CTTCTTTATAATACTCTTGA+AGG | 0.329380 | 3_1:-4622078 | None:intergenic |
| GAGAGGATGAACAACCTTCT+TGG | 0.339326 | 3_1:+4624642 | Msa0345390:CDS |
| CTTTGCATCCCTGTTCTTTG+AGG | 0.339480 | 3_1:-4622828 | None:intergenic |
| TCACTGAATTTAGTAATTCC+TGG | 0.358866 | 3_1:-4622032 | None:intergenic |
| ATTATTTCGTCGTAGGGTAT+TGG | 0.363471 | 3_1:+4625213 | Msa0345390:three_prime_UTR |
| GGCTGGACCCCTCAAAGAAC+AGG | 0.375162 | 3_1:+4622819 | Msa0345390:CDS |
| TTCTGCTACCCCTTCATCTT+CGG | 0.376152 | 3_1:-4621925 | None:intergenic |
| TTTGCATCCCTGTTCTTTGA+GGG | 0.379386 | 3_1:-4622827 | None:intergenic |
| ATGGCTGATTGGCTGGCCTT+TGG | 0.383693 | 3_1:+4624985 | Msa0345390:three_prime_UTR |
| GAGCCGGGAAAGAGGAAGTT+TGG | 0.384673 | 3_1:+4621639 | Msa0345390:CDS |
| GCTGACAAGTTCGAGAATAA+AGG | 0.387185 | 3_1:+4624688 | Msa0345390:CDS |
| CTTGTTACAGCTAGCAGAAA+AGG | 0.390626 | 3_1:+4622437 | Msa0345390:intron |
| TCCCTTGTTTGTGCTTGCAT+TGG | 0.391353 | 3_1:-4624621 | None:intergenic |
| TTCATCATGTTCAGTAACTT+TGG | 0.395085 | 3_1:-4625042 | None:intergenic |
| AATCATATTCCTAATACAAT+TGG | 0.407003 | 3_1:-4625082 | None:intergenic |
| TGTAAAGTTTCTTCATTTGT+TGG | 0.412234 | 3_1:-4621743 | None:intergenic |
| ACGGCGGAAGTGACAGCGGC+TGG | 0.419525 | 3_1:-4619780 | None:intergenic |
| AGTAACGTAATGAGCAGAAA+TGG | 0.420863 | 3_1:-4624938 | None:intergenic |
| CTTATAAGTGTCGCGACAAA+AGG | 0.425927 | 3_1:+4622504 | Msa0345390:CDS |
| AAACTTGATGGCTGATTGGC+TGG | 0.426019 | 3_1:+4624978 | Msa0345390:three_prime_UTR |
| GGAGACAGAGCGCAAGATCA+AGG | 0.426021 | 3_1:+4622257 | Msa0345390:CDS |
| CTCATTACGTTACTAAAGAA+TGG | 0.426920 | 3_1:+4624947 | Msa0345390:three_prime_UTR |
| GAGACAACTGCCCCTGCTAC+TGG | 0.429501 | 3_1:+4621807 | Msa0345390:CDS |
| GGAGAAACTTGATGGCTGAT+TGG | 0.433716 | 3_1:+4624974 | Msa0345390:three_prime_UTR |
| CGTGTTTCTAGTGGGATAAT+CGG | 0.434301 | 3_1:+4624894 | Msa0345390:three_prime_UTR |
| AGAGGATGAACAACCTTCTT+GGG | 0.435774 | 3_1:+4624643 | Msa0345390:CDS |
| ACGTTACTAAAGAATGGAAT+TGG | 0.440530 | 3_1:+4624953 | Msa0345390:three_prime_UTR |
| GCGTTAGGGAAGCCAGCTAT+TGG | 0.445925 | 3_1:+4623880 | Msa0345390:CDS |
| TTCATCGGAACTGCTATCTT+GGG | 0.454720 | 3_1:-4624837 | None:intergenic |
| TAAAAGTTCCTCATCAAAAT+GGG | 0.455210 | 3_1:-4625175 | None:intergenic |
| ATCACCTTTGCACCAATAGC+TGG | 0.456798 | 3_1:-4623892 | None:intergenic |
| TTCAAAACCTTAATCTTCAT+CGG | 0.461212 | 3_1:-4624852 | None:intergenic |
| CAAGTTCGAGAATAAAGGAT+TGG | 0.462911 | 3_1:+4624693 | Msa0345390:CDS |
| CCGAAAAGTAATCGAAAGCT+TGG | 0.464465 | 3_1:+4625138 | Msa0345390:three_prime_UTR |
| ATGGAAGTGAGCCGGGAAAG+AGG | 0.474815 | 3_1:+4621631 | Msa0345390:CDS |
| CTTCTAGTACTCCCAGTAGC+AGG | 0.475505 | 3_1:-4621819 | None:intergenic |
| GAGTGTTTCTGATGAGTTGT+TGG | 0.478230 | 3_1:+4622100 | Msa0345390:CDS |
| ATGGAATTGGAGAAACTTGA+TGG | 0.484582 | 3_1:+4624966 | Msa0345390:three_prime_UTR |
| CTTCCCTAACGCTGAAAAGA+AGG | 0.488467 | 3_1:-4623869 | None:intergenic |
| AAAGCTCAAGTTGCTCAGAA+AGG | 0.489370 | 3_1:+4622797 | Msa0345390:CDS |
| TTCTTGTGATCTGACAATAC+TGG | 0.489621 | 3_1:-4622207 | None:intergenic |
| TTTAGTATTATTTCGTCGTA+GGG | 0.489691 | 3_1:+4625207 | Msa0345390:three_prime_UTR |
| TGAACAAATTCAAAATTGGT+TGG | 0.491540 | 3_1:-4625014 | None:intergenic |
| AATTGGTTGGTTTATACCAA+AGG | 0.494286 | 3_1:-4625001 | None:intergenic |
| ATTTAGTATTATTTCGTCGT+AGG | 0.496791 | 3_1:+4625206 | Msa0345390:three_prime_UTR |
| AAGCTCAAGTTGCTCAGAAA+GGG | 0.498953 | 3_1:+4622798 | Msa0345390:CDS |
| AGCATATAATTATCGCGTAA+TGG | 0.502059 | 3_1:-4624668 | None:intergenic |
| GAAGTGACAGCGGCTGGGAA+AGG | 0.502170 | 3_1:-4619774 | None:intergenic |
| AAGTTCGAGAATAAAGGATT+GGG | 0.504352 | 3_1:+4624694 | Msa0345390:CDS |
| GTTGAGCATGGAAGTGAGCC+GGG | 0.505266 | 3_1:+4621624 | Msa0345390:CDS |
| TATAGAAAAGCTCGCGGAAG+AGG | 0.510403 | 3_1:+4622236 | Msa0345390:CDS |
| CTCAAAGAACAGGGATGCAA+AGG | 0.511691 | 3_1:+4622829 | Msa0345390:CDS |
| GAAGATCTATCCGAAGATGA+AGG | 0.518592 | 3_1:+4621915 | Msa0345390:CDS |
| TTGCATCCCTGTTCTTTGAG+GGG | 0.522520 | 3_1:-4622826 | None:intergenic |
| GAGGAGGATGAGATTCAGCC+AGG | 0.523349 | 3_1:+4622014 | Msa0345390:CDS |
| GGTTGAGCATGGAAGTGAGC+CGG | 0.523486 | 3_1:+4621623 | Msa0345390:CDS |
| TTGTTACAGCTAGCAGAAAA+GGG | 0.523614 | 3_1:+4622438 | Msa0345390:intron |
| TTCTAGTACTCCCAGTAGCA+GGG | 0.533288 | 3_1:-4621818 | None:intergenic |
| AGACAACTGCCCCTGCTACT+GGG | 0.534405 | 3_1:+4621808 | Msa0345390:CDS |
| GGCCAATGCAAGCACAAACA+AGG | 0.534686 | 3_1:+4624619 | Msa0345390:intron |
| GAAGAAAGGTTACCAGATGA+TGG | 0.535508 | 3_1:-4619855 | None:intergenic |
| TGCGCGTCCAAATAATTAGC+AGG | 0.542869 | 3_1:-4622471 | None:intergenic |
| GAGACAGAGCGCAAGATCAA+GGG | 0.544740 | 3_1:+4622258 | Msa0345390:CDS |
| TCAAGTTGCTCAGAAAGGGC+TGG | 0.553946 | 3_1:+4622802 | Msa0345390:CDS |
| AAGATCTATCCGAAGATGAA+GGG | 0.556404 | 3_1:+4621916 | Msa0345390:CDS |
| ACTTTCTTCTGTCCGTGTGG+TGG | 0.558848 | 3_1:-4621711 | None:intergenic |
| CAGCATCAGCGTGTTTCTAG+TGG | 0.559433 | 3_1:+4624885 | Msa0345390:three_prime_UTR |
| GAAACACAAGTGGTTGAGCA+TGG | 0.561474 | 3_1:+4621612 | Msa0345390:CDS |
| CTCTGAGGATGAAGATGATG+AGG | 0.568128 | 3_1:+4621995 | Msa0345390:CDS |
| CGGGAAAGAGGAAGTTTGGT+AGG | 0.576418 | 3_1:+4621643 | Msa0345390:CDS |
| TCGCGTAATGGAGCCCAAGA+AGG | 0.580268 | 3_1:-4624656 | None:intergenic |
| TCAAAGAACAGGGATGCAAA+GGG | 0.580392 | 3_1:+4622830 | Msa0345390:CDS |
| GGAATTACTAAATTCAGTGA+AGG | 0.581563 | 3_1:+4622035 | Msa0345390:CDS |
| CGGCGGAAGTGACAGCGGCT+GGG | 0.582939 | 3_1:-4619779 | None:intergenic |
| GAAGCCAGCTATTGGTGCAA+AGG | 0.585865 | 3_1:+4623888 | Msa0345390:CDS |
| CAGTTATCACAAACTCTCAA+CGG | 0.590260 | 3_1:+4619812 | Msa0345390:five_prime_UTR |
| ATAAGTGTCGCGACAAAAGG+AGG | 0.590468 | 3_1:+4622507 | Msa0345390:CDS |
| GAAGATGAAGGGGTAGCAGA+AGG | 0.603387 | 3_1:+4621927 | Msa0345390:CDS |
| AGCATCAGCGTGTTTCTAGT+GGG | 0.603770 | 3_1:+4624886 | Msa0345390:three_prime_UTR |
| GCCAATGCAAGCACAAACAA+GGG | 0.604219 | 3_1:+4624620 | Msa0345390:CDS |
| TGCAAGCACAAACAAGGGAG+AGG | 0.605005 | 3_1:+4624625 | Msa0345390:CDS |
| TTAACTTTCTTCTGTCCGTG+TGG | 0.619849 | 3_1:-4621714 | None:intergenic |
| GTGATAACTGTAGAGATGAA+CGG | 0.638571 | 3_1:-4619799 | None:intergenic |
| GTGGCATCTATGAAGACTAG+AGG | 0.647773 | 3_1:+4621843 | Msa0345390:CDS |
| AGATCTATCCGAAGATGAAG+GGG | 0.651704 | 3_1:+4621917 | Msa0345390:CDS |
| AGGAAGTTTGGTAGGAACCA+AGG | 0.652606 | 3_1:+4621651 | Msa0345390:CDS |
| ATGAACGGCGGAAGTGACAG+CGG | 0.654528 | 3_1:-4619784 | None:intergenic |
| TAAGAAAGTTAATTTCTCTG+AGG | 0.655143 | 3_1:+4621980 | Msa0345390:CDS |
| TCTAGTACTCCCAGTAGCAG+GGG | 0.660080 | 3_1:-4621817 | None:intergenic |
| TGAGGATGAAGATGATGAGG+AGG | 0.663150 | 3_1:+4621998 | Msa0345390:CDS |
| TACTGGGAGTACTAGAAGTG+TGG | 0.666406 | 3_1:+4621824 | Msa0345390:CDS |
| CATGGCTGAAGAAACACAAG+TGG | 0.666963 | 3_1:+4621602 | Msa0345390:exon |
| GCTGGACCCCTCAAAGAACA+GGG | 0.672553 | 3_1:+4622820 | Msa0345390:CDS |
| AAAGTGATGAAGCCACCACA+CGG | 0.690683 | 3_1:+4621699 | Msa0345390:CDS |
| TCTTGTTATAGAAAAGCTCG+CGG | 0.691844 | 3_1:+4622230 | Msa0345390:CDS |
| AGGTTGTAAAGCATTCAGGA+TGG | 0.710807 | 3_1:+4622055 | Msa0345390:CDS |
| ATAACTGTAGAGATGAACGG+CGG | 0.780829 | 3_1:-4619796 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATGAAATTAAGAAA+GGG | - | chr3_1:4619882-4619901 | None:intergenic | 10.0% |
| !! | TTATTAGAGAAATAAAAAAT+TGG | + | chr3_1:4622155-4622174 | Msa0345390:intron | 10.0% |
| !!! | AAGTTTTCTATTTTAAAAAT+AGG | - | chr3_1:4623221-4623240 | None:intergenic | 10.0% |
| !! | ATTAATTATCTAAAAAACAT+TGG | - | chr3_1:4623457-4623476 | None:intergenic | 10.0% |
| !! | AATATATGAAATTAAGAAAG+GGG | - | chr3_1:4619881-4619900 | None:intergenic | 15.0% |
| !! | GAAATATATGAAATTAAGAA+AGG | - | chr3_1:4619883-4619902 | None:intergenic | 15.0% |
| !!! | TTTATTCTGGTTTTTTTTTT+TGG | + | chr3_1:4619933-4619952 | Msa0345390:intron | 15.0% |
| !! | AAATTGAGATTAAAAATGAT+AGG | - | chr3_1:4620294-4620313 | None:intergenic | 15.0% |
| !! | TTGAATTATAAAACAATTCA+TGG | + | chr3_1:4621584-4621603 | Msa0345390:exon | 15.0% |
| !!! | TTTCTTTTTCTTTTAAATAG+AGG | + | chr3_1:4622538-4622557 | Msa0345390:intron | 15.0% |
| !! | GATTATCATTATTAAATTGA+AGG | + | chr3_1:4622747-4622766 | Msa0345390:intron | 15.0% |
| !! | TTCTTTAATAATAAAACTTG+AGG | + | chr3_1:4623174-4623193 | Msa0345390:intron | 15.0% |
| !!! | CTTTAAAAAAAATGAATTGA+AGG | - | chr3_1:4623373-4623392 | None:intergenic | 15.0% |
| !!! | TCAATTCATTTTTTTTAAAG+AGG | + | chr3_1:4623373-4623392 | Msa0345390:intron | 15.0% |
| !! | CAACAATTAAATACTTAAAT+AGG | - | chr3_1:4623652-4623671 | None:intergenic | 15.0% |
| !! | TTTAATTGTTGAAAAATAAG+AGG | + | chr3_1:4623661-4623680 | Msa0345390:intron | 15.0% |
| !! | TTAATTGTTGAAAAATAAGA+GGG | + | chr3_1:4623662-4623681 | Msa0345390:intron | 15.0% |
| !! | AATAAATAGAGTAAATGATT+TGG | - | chr3_1:4624055-4624074 | None:intergenic | 15.0% |
| !!! | TAACTTTAAAATAAACTTAC+TGG | - | chr3_1:4624731-4624750 | None:intergenic | 15.0% |
| !! | ATATATGAAATTAAGAAAGG+GGG | - | chr3_1:4619880-4619899 | None:intergenic | 20.0% |
| !!! | TTCATATATTTCACCAATTT+TGG | + | chr3_1:4619891-4619910 | Msa0345390:intron | 20.0% |
| !!! | TCTCATCTTTTTTTTTATTC+TGG | + | chr3_1:4619920-4619939 | Msa0345390:intron | 20.0% |
| !! | GTGTTTAATGTATATTTGAT+TGG | + | chr3_1:4619955-4619974 | Msa0345390:intron | 20.0% |
| !!! | ATTTTGATTTTATTGGAATG+TGG | + | chr3_1:4620037-4620056 | Msa0345390:intron | 20.0% |
| !! | TTTCATACTTATAAGTTCAT+AGG | + | chr3_1:4620434-4620453 | Msa0345390:intron | 20.0% |
| !!! | TTTTTATAAAACTTGGTATC+CGG | - | chr3_1:4620725-4620744 | None:intergenic | 20.0% |
| !! | AAATATTGAAAACCTTAATG+TGG | + | chr3_1:4620773-4620792 | Msa0345390:intron | 20.0% |
| !!! | TGGTCTTAAAAAAATGTTTA+CGG | - | chr3_1:4620814-4620833 | None:intergenic | 20.0% |
| !!! | ATTGTTATTACCATCTTTTA+GGG | + | chr3_1:4620836-4620855 | Msa0345390:intron | 20.0% |
| !! | ATTGTTTAAGGAATTAAAAG+AGG | + | chr3_1:4621019-4621038 | Msa0345390:intron | 20.0% |
| !!! | ATTTGTGAATTTTGTTAAGA+AGG | + | chr3_1:4621130-4621149 | Msa0345390:intron | 20.0% |
| !!! | TTTGTGAATTTTGTTAAGAA+GGG | + | chr3_1:4621131-4621150 | Msa0345390:intron | 20.0% |
| !! | ATCTATATGATGATAAGTTT+AGG | - | chr3_1:4621203-4621222 | None:intergenic | 20.0% |
| !! | ATCAGTTAAATTAGTAAGTA+AGG | + | chr3_1:4621255-4621274 | Msa0345390:intron | 20.0% |
| !! | TGAAAATTGAATTCGTATTT+CGG | - | chr3_1:4621386-4621405 | None:intergenic | 20.0% |
| !!! | CATAAATTTTAGTGCTAATT+GGG | - | chr3_1:4622347-4622366 | None:intergenic | 20.0% |
| !!! | ACATAAATTTTAGTGCTAAT+TGG | - | chr3_1:4622348-4622367 | None:intergenic | 20.0% |
| !! | TAGACCAAAATATTATCTAT+CGG | + | chr3_1:4622384-4622403 | Msa0345390:intron | 20.0% |
| !! | AAACAAAATTTGCAAATGTT+AGG | - | chr3_1:4622691-4622710 | None:intergenic | 20.0% |
| !!! | TTTCAGTTTATCTTTTATAC+AGG | + | chr3_1:4622972-4622991 | Msa0345390:intron | 20.0% |
| !!! | TTCAGTTTATCTTTTATACA+GGG | + | chr3_1:4622973-4622992 | Msa0345390:intron | 20.0% |
| !! | CAAATTAGATAGTATGAATT+GGG | - | chr3_1:4623812-4623831 | None:intergenic | 20.0% |
| !! | ACAAATTAGATAGTATGAAT+TGG | - | chr3_1:4623813-4623832 | None:intergenic | 20.0% |
| !!! | TCTGTTGATAATAACTAATT+AGG | + | chr3_1:4623961-4623980 | Msa0345390:intron | 20.0% |
| !!! | CATTCAACTTATATACATTT+TGG | - | chr3_1:4624025-4624044 | None:intergenic | 20.0% |
| !!! | TCTTTCATTTTTCGAATAAA+GGG | - | chr3_1:4624112-4624131 | None:intergenic | 20.0% |
| !!! | TTCTTTCATTTTTCGAATAA+AGG | - | chr3_1:4624113-4624132 | None:intergenic | 20.0% |
| !! | ATGCATTAAATTCAGAAAAT+CGG | - | chr3_1:4624184-4624203 | None:intergenic | 20.0% |
| !!! | ACAATAGAACAATTTTAAAG+TGG | - | chr3_1:4624340-4624359 | None:intergenic | 20.0% |
| !!! | TTAAGGTTTTGAAATTGAAA+AGG | + | chr3_1:4624862-4624881 | Msa0345390:exon | 20.0% |
| !! | CTTTATTATCCAATTGTATT+AGG | + | chr3_1:4625073-4625092 | Msa0345390:three_prime_UTR | 20.0% |
| !! | AATCATATTCCTAATACAAT+TGG | - | chr3_1:4625085-4625104 | None:intergenic | 20.0% |
| !! | CTATAGTAATAGACTATTTA+TGG | + | chr3_1:4625107-4625126 | Msa0345390:three_prime_UTR | 20.0% |
| !!! | GTTTTAGATTGTAATCATTC+AGG | - | chr3_1:4620107-4620126 | None:intergenic | 25.0% |
| !! | AATCTCAATTTTACCTTTGT+AGG | + | chr3_1:4620303-4620322 | Msa0345390:intron | 25.0% |
| ! | AAAATCAATTAAGCCTACAA+AGG | - | chr3_1:4620319-4620338 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAAACTGCAGCT+AGG | + | chr3_1:4620750-4620769 | Msa0345390:intron | 25.0% |
| ! | AAAGATGGTAATAACAATCA+TGG | - | chr3_1:4620834-4620853 | None:intergenic | 25.0% |
| !!! | GATTGTTATTACCATCTTTT+AGG | + | chr3_1:4620835-4620854 | Msa0345390:intron | 25.0% |
| ! | TTCCTTAAACAATGTTCTTA+GGG | - | chr3_1:4621012-4621031 | None:intergenic | 25.0% |
| ! | ATTCCTTAAACAATGTTCTT+AGG | - | chr3_1:4621013-4621032 | None:intergenic | 25.0% |
| ! | GTTAAATTAGTAAGTAAGGT+AGG | + | chr3_1:4621259-4621278 | Msa0345390:intron | 25.0% |
| !!! | TTCAACAACGTAAGTTTTAT+TGG | - | chr3_1:4621353-4621372 | None:intergenic | 25.0% |
| ! | TTAGCAGAAAAATATAGACT+CGG | - | chr3_1:4621436-4621455 | None:intergenic | 25.0% |
| !! | GTTTCTTACTTGACTTTTTA+CGG | - | chr3_1:4621677-4621696 | None:intergenic | 25.0% |
| ! | TGTAAAGTTTCTTCATTTGT+TGG | - | chr3_1:4621746-4621765 | None:intergenic | 25.0% |
| ! | TAAGAAAGTTAATTTCTCTG+AGG | + | chr3_1:4621980-4621999 | Msa0345390:CDS | 25.0% |
| ! | CTTCTTTATAATACTCTTGA+AGG | - | chr3_1:4622081-4622100 | None:intergenic | 25.0% |
| ! | TAAACTTGAACAACTCTATA+GGG | + | chr3_1:4622183-4622202 | Msa0345390:intron | 25.0% |
| !!! | ATATTTTGGTCTACGATAAT+TGG | - | chr3_1:4622377-4622396 | None:intergenic | 25.0% |
| ! | AGACCAAAATATTATCTATC+GGG | + | chr3_1:4622385-4622404 | Msa0345390:intron | 25.0% |
| !! | TTACCCGATAGATAATATTT+TGG | - | chr3_1:4622391-4622410 | None:intergenic | 25.0% |
| ! | AAAGAAAAAGGAATCTCATT+TGG | + | chr3_1:4622939-4622958 | Msa0345390:intron | 25.0% |
| ! | AAGAAAAAGGAATCTCATTT+GGG | + | chr3_1:4622940-4622959 | Msa0345390:intron | 25.0% |
| ! | AAATAGAAAACTTAAGAGTC+AGG | + | chr3_1:4623228-4623247 | Msa0345390:intron | 25.0% |
| ! | TACGTATTAAGGTGATTATA+GGG | - | chr3_1:4623265-4623284 | None:intergenic | 25.0% |
| ! | TTACGTATTAAGGTGATTAT+AGG | - | chr3_1:4623266-4623285 | None:intergenic | 25.0% |
| ! | ACGATGTGTTAAAAAAAATG+TGG | - | chr3_1:4623318-4623337 | None:intergenic | 25.0% |
| ! | GTTTACTGAGGTTTAAAAAA+AGG | - | chr3_1:4623418-4623437 | None:intergenic | 25.0% |
| ! | AAAATCAGTGTTATCAATAG+AGG | - | chr3_1:4623549-4623568 | None:intergenic | 25.0% |
| !!! | ATATGATGTTCTAAGAATGA+GGG | + | chr3_1:4623608-4623627 | Msa0345390:intron | 25.0% |
| !!! | GCAAACATTTTGAGTATATT+AGG | - | chr3_1:4623790-4623809 | None:intergenic | 25.0% |
| ! | ACCTCTAAATTAATGTGATA+TGG | + | chr3_1:4624272-4624291 | Msa0345390:intron | 25.0% |
| ! | TCCATATCACATTAATTTAG+AGG | - | chr3_1:4624276-4624295 | None:intergenic | 25.0% |
| !! | ACTTTGAACATGATGTTTTT+AGG | + | chr3_1:4624391-4624410 | Msa0345390:intron | 25.0% |
| !! | TCCAAGCAATTTGATAATTA+GGG | - | chr3_1:4624587-4624606 | None:intergenic | 25.0% |
| !! | ATCCAAGCAATTTGATAATT+AGG | - | chr3_1:4624588-4624607 | None:intergenic | 25.0% |
| ! | ATTATCAAATTGCTTGGATT+TGG | + | chr3_1:4624589-4624608 | Msa0345390:intron | 25.0% |
| ! | TTCAAAACCTTAATCTTCAT+CGG | - | chr3_1:4624855-4624874 | None:intergenic | 25.0% |
| ! | TGAACAAATTCAAAATTGGT+TGG | - | chr3_1:4625017-4625036 | None:intergenic | 25.0% |
| ! | TCAGTGAACAAATTCAAAAT+TGG | - | chr3_1:4625021-4625040 | None:intergenic | 25.0% |
| !!! | TTTAATTTCCCATTTTGATG+AGG | + | chr3_1:4625167-4625186 | Msa0345390:three_prime_UTR | 25.0% |
| ! | TAAAAGTTCCTCATCAAAAT+GGG | - | chr3_1:4625178-4625197 | None:intergenic | 25.0% |
| ! | ATAAAAGTTCCTCATCAAAA+TGG | - | chr3_1:4625179-4625198 | None:intergenic | 25.0% |
| ! | ATTTAGTATTATTTCGTCGT+AGG | + | chr3_1:4625206-4625225 | Msa0345390:three_prime_UTR | 25.0% |
| ! | TTTAGTATTATTTCGTCGTA+GGG | + | chr3_1:4625207-4625226 | Msa0345390:three_prime_UTR | 25.0% |
| AAGCTATAAGCTCAAATTTG+TGG | - | chr3_1:4620162-4620181 | None:intergenic | 30.0% | |
| TTGACTAAAAAAGACCTGTT+CGG | + | chr3_1:4620199-4620218 | Msa0345390:intron | 30.0% | |
| TATTGAAAACCTTAATGTGG+TGG | + | chr3_1:4620776-4620795 | Msa0345390:intron | 30.0% | |
| ACAAGAGAATCAAATTGAAC+AGG | - | chr3_1:4620958-4620977 | None:intergenic | 30.0% | |
| TTTGTTAAGAAGGGAGAAAA+TGG | + | chr3_1:4621140-4621159 | Msa0345390:intron | 30.0% | |
| TTGTTAAGAAGGGAGAAAAT+GGG | + | chr3_1:4621141-4621160 | Msa0345390:intron | 30.0% | |
| TAAGGTAGGTAAAGTTTGTA+GGG | + | chr3_1:4621273-4621292 | Msa0345390:intron | 30.0% | |
| TAGCAGAAAAATATAGACTC+GGG | - | chr3_1:4621435-4621454 | None:intergenic | 30.0% | |
| TATATGTCACATATGAAGAC+AGG | - | chr3_1:4621562-4621581 | None:intergenic | 30.0% | |
| TGTCTTCATATGTGACATAT+AGG | + | chr3_1:4621561-4621580 | Msa0345390:intron | 30.0% | |
| TCACTGAATTTAGTAATTCC+TGG | - | chr3_1:4622035-4622054 | None:intergenic | 30.0% | |
| GGAATTACTAAATTCAGTGA+AGG | + | chr3_1:4622035-4622054 | Msa0345390:CDS | 30.0% | |
| CTAAACTTGAACAACTCTAT+AGG | + | chr3_1:4622182-4622201 | Msa0345390:intron | 30.0% | |
| GCAACAGTTAAATAAGTAAG+AGG | - | chr3_1:4622605-4622624 | None:intergenic | 30.0% | |
| ACCATCTCAAGTAAAGAAAA+AGG | + | chr3_1:4622927-4622946 | Msa0345390:intron | 30.0% | |
| ! | TCCTTTTTCTTTACTTGAGA+TGG | - | chr3_1:4622931-4622950 | None:intergenic | 30.0% |
| AGAAAAAGGAATCTCATTTG+GGG | + | chr3_1:4622941-4622960 | Msa0345390:intron | 30.0% | |
| ! | GGGAAATTTAACAACTGTTT+TGG | + | chr3_1:4622993-4623012 | Msa0345390:intron | 30.0% |
| TGAGAGAAGTTTACGTATTA+AGG | - | chr3_1:4623276-4623295 | None:intergenic | 30.0% | |
| CTGCATAATAAAGTTTACTG+AGG | - | chr3_1:4623430-4623449 | None:intergenic | 30.0% | |
| !! | GATATGATGTTCTAAGAATG+AGG | + | chr3_1:4623607-4623626 | Msa0345390:intron | 30.0% |
| !! | TATGATGTTCTAAGAATGAG+GGG | + | chr3_1:4623609-4623628 | Msa0345390:intron | 30.0% |
| TGTTGAAAAATAAGAGGGTT+TGG | + | chr3_1:4623667-4623686 | Msa0345390:intron | 30.0% | |
| !!! | ACCTATCTGTTCTATTTTTG+TGG | + | chr3_1:4623762-4623781 | Msa0345390:intron | 30.0% |
| ACCACAAAAATAGAACAGAT+AGG | - | chr3_1:4623766-4623785 | None:intergenic | 30.0% | |
| CTTAATTCTGTTGAAGAACA+AGG | + | chr3_1:4623995-4624014 | Msa0345390:intron | 30.0% | |
| TAGACTTGAGCATTTACTTA+CGG | + | chr3_1:4624075-4624094 | Msa0345390:intron | 30.0% | |
| TCCCTAATTATCAAATTGCT+TGG | + | chr3_1:4624583-4624602 | Msa0345390:intron | 30.0% | |
| AGCATATAATTATCGCGTAA+TGG | - | chr3_1:4624671-4624690 | None:intergenic | 30.0% | |
| AAGTTCGAGAATAAAGGATT+GGG | + | chr3_1:4624694-4624713 | Msa0345390:CDS | 30.0% | |
| CTCATTACGTTACTAAAGAA+TGG | + | chr3_1:4624947-4624966 | Msa0345390:three_prime_UTR | 30.0% | |
| ACGTTACTAAAGAATGGAAT+TGG | + | chr3_1:4624953-4624972 | Msa0345390:three_prime_UTR | 30.0% | |
| !! | AATTGGTTGGTTTATACCAA+AGG | - | chr3_1:4625004-4625023 | None:intergenic | 30.0% |
| TTCATCATGTTCAGTAACTT+TGG | - | chr3_1:4625045-4625064 | None:intergenic | 30.0% | |
| GTGATAACTGTAGAGATGAA+CGG | - | chr3_1:4619802-4619821 | None:intergenic | 35.0% | |
| CAGTTATCACAAACTCTCAA+CGG | + | chr3_1:4619812-4619831 | Msa0345390:five_prime_UTR | 35.0% | |
| !! | CCAGATGATGGAAAAAGAAA+CGG | - | chr3_1:4619846-4619865 | None:intergenic | 35.0% |
| AATTAAGAAAGGGGGAAGAA+AGG | - | chr3_1:4619872-4619891 | None:intergenic | 35.0% | |
| GATGAGAACAGTACCAAAAT+TGG | - | chr3_1:4619907-4619926 | None:intergenic | 35.0% | |
| GGTTTAAATCGCTGTTGTAA+TGG | + | chr3_1:4620479-4620498 | Msa0345390:intron | 35.0% | |
| TTAAATCGCTGTTGTAATGG+CGG | + | chr3_1:4620482-4620501 | Msa0345390:intron | 35.0% | |
| AAGGAATTGTTAGCATCATG+AGG | - | chr3_1:4620608-4620627 | None:intergenic | 35.0% | |
| GATGCTAACAATTCCTTTGT+CGG | + | chr3_1:4620611-4620630 | Msa0345390:intron | 35.0% | |
| ATGCTAACAATTCCTTTGTC+GGG | + | chr3_1:4620612-4620631 | Msa0345390:intron | 35.0% | |
| ! | GATTTGCTTTGGCTTCAATT+GGG | + | chr3_1:4620649-4620668 | Msa0345390:intron | 35.0% |
| !! | CTCTGGATTAGTTAGTTCTT+AGG | + | chr3_1:4620699-4620718 | Msa0345390:intron | 35.0% |
| ! | AATGTTTACGGCAACAGTTT+TGG | - | chr3_1:4620802-4620821 | None:intergenic | 35.0% |
| ATTCAATCATGTGACTCCTT+GGG | + | chr3_1:4620926-4620945 | Msa0345390:intron | 35.0% | |
| TGCCCTAAGAACATTGTTTA+AGG | + | chr3_1:4621007-4621026 | Msa0345390:intron | 35.0% | |
| !! | GAAAATGGGATTTTAGCAGT+TGG | + | chr3_1:4621155-4621174 | Msa0345390:intron | 35.0% |
| !! | GGATTTTAGCAGTTGGAATT+TGG | + | chr3_1:4621162-4621181 | Msa0345390:intron | 35.0% |
| GTAAGGTAGGTAAAGTTTGT+AGG | + | chr3_1:4621272-4621291 | Msa0345390:intron | 35.0% | |
| AAGGTAGGTAAAGTTTGTAG+GGG | + | chr3_1:4621274-4621293 | Msa0345390:intron | 35.0% | |
| AGCAGAAAAATATAGACTCG+GGG | - | chr3_1:4621434-4621453 | None:intergenic | 35.0% | |
| TTTCACCAAAAATAAGCACG+TGG | + | chr3_1:4621875-4621894 | Msa0345390:CDS | 35.0% | |
| AAGATCTATCCGAAGATGAA+GGG | + | chr3_1:4621916-4621935 | Msa0345390:CDS | 35.0% | |
| TTCTTGTGATCTGACAATAC+TGG | - | chr3_1:4622210-4622229 | None:intergenic | 35.0% | |
| ! | TCTTGTTATAGAAAAGCTCG+CGG | + | chr3_1:4622230-4622249 | Msa0345390:CDS | 35.0% |
| GACAAAAAAGGAAAAGCTGA+TGG | + | chr3_1:4622284-4622303 | Msa0345390:CDS | 35.0% | |
| TTGTTACAGCTAGCAGAAAA+GGG | + | chr3_1:4622438-4622457 | Msa0345390:intron | 35.0% | |
| TGTCACACCTGCTAATTATT+TGG | + | chr3_1:4622464-4622483 | Msa0345390:CDS | 35.0% | |
| TTTAACTGTTGCTGTGAACA+TGG | + | chr3_1:4622613-4622632 | Msa0345390:intron | 35.0% | |
| CTACTTCTGATTTCTTTCAG+TGG | + | chr3_1:4622637-4622656 | Msa0345390:intron | 35.0% | |
| ACAAAGAGAGGAGGAAAATT+TGG | - | chr3_1:4622717-4622736 | None:intergenic | 35.0% | |
| !! | GTTTTATACACACTTGTTGC+AGG | + | chr3_1:4622769-4622788 | Msa0345390:intron | 35.0% |
| CTGTCAGTGTTATCAAATAG+TGG | + | chr3_1:4623038-4623057 | Msa0345390:intron | 35.0% | |
| TATAGATGCTACAACCACTA+TGG | - | chr3_1:4623138-4623157 | None:intergenic | 35.0% | |
| ATAGTGGTTGTAGCATCTAT+AGG | + | chr3_1:4623137-4623156 | Msa0345390:intron | 35.0% | |
| TAGTGGTTGTAGCATCTATA+GGG | + | chr3_1:4623138-4623157 | Msa0345390:intron | 35.0% | |
| AAAAAAAATGTGGCAGAGCA+TGG | - | chr3_1:4623308-4623327 | None:intergenic | 35.0% | |
| !! | TTTTAAAGAGGCAGCATGTT+TGG | + | chr3_1:4623385-4623404 | Msa0345390:intron | 35.0% |
| AAATAGAAGACGTAGCATAG+TGG | - | chr3_1:4623489-4623508 | None:intergenic | 35.0% | |
| !! | TAGAGGATAGTGGAAAATAG+TGG | - | chr3_1:4623532-4623551 | None:intergenic | 35.0% |
| GTGTTATCAATAGAGGATAG+TGG | - | chr3_1:4623542-4623561 | None:intergenic | 35.0% | |
| TCACAAACAAATCTTCAGCA+TGG | - | chr3_1:4623589-4623608 | None:intergenic | 35.0% | |
| TGAAACCTAAAACTCTGACA+GGG | - | chr3_1:4623725-4623744 | None:intergenic | 35.0% | |
| ! | TCGTTCAGTCAGTTTTTCAT+TGG | + | chr3_1:4623930-4623949 | Msa0345390:intron | 35.0% |
| GTTCTTCAACAGAATTAAGC+AGG | - | chr3_1:4623994-4624013 | None:intergenic | 35.0% | |
| TGTTCAAAGTTCATCCAGTT+TGG | - | chr3_1:4624381-4624400 | None:intergenic | 35.0% | |
| ! | TTTGATAATTAGGGACACGA+TGG | - | chr3_1:4624578-4624597 | None:intergenic | 35.0% |
| CAAGTTCGAGAATAAAGGAT+TGG | + | chr3_1:4624693-4624712 | Msa0345390:CDS | 35.0% | |
| AGTAACGTAATGAGCAGAAA+TGG | - | chr3_1:4624941-4624960 | None:intergenic | 35.0% | |
| ATGGAATTGGAGAAACTTGA+TGG | + | chr3_1:4624966-4624985 | Msa0345390:three_prime_UTR | 35.0% | |
| !! | CCAAGCTTTCGATTACTTTT+CGG | - | chr3_1:4625141-4625160 | None:intergenic | 35.0% |
| ATTATTTCGTCGTAGGGTAT+TGG | + | chr3_1:4625213-4625232 | Msa0345390:three_prime_UTR | 35.0% | |
| ATAACTGTAGAGATGAACGG+CGG | - | chr3_1:4619799-4619818 | None:intergenic | 40.0% | |
| ! | CCGTTTCTTTTTCCATCATC+TGG | + | chr3_1:4619843-4619862 | Msa0345390:five_prime_UTR | 40.0% |
| GAAGAAAGGTTACCAGATGA+TGG | - | chr3_1:4619858-4619877 | None:intergenic | 40.0% | |
| ! | ATAAGCTCGTGAGAAAGTGT+CGG | - | chr3_1:4620228-4620247 | None:intergenic | 40.0% |
| CACGAGCTTATAGCTTATAG+AGG | + | chr3_1:4620237-4620256 | Msa0345390:intron | 40.0% | |
| CTGTGTGTTTGTCATCATTG+AGG | + | chr3_1:4620458-4620477 | Msa0345390:intron | 40.0% | |
| ! | TGTGTTCCTCTCAAGGTATT+AGG | + | chr3_1:4620575-4620594 | Msa0345390:intron | 40.0% |
| TTCGAACCTAATACCTTGAG+AGG | - | chr3_1:4620584-4620603 | None:intergenic | 40.0% | |
| AAGCAAATCCCTATATGGAC+TGG | - | chr3_1:4620638-4620657 | None:intergenic | 40.0% | |
| ! | GTCCATATAGGGATTTGCTT+TGG | + | chr3_1:4620638-4620657 | Msa0345390:intron | 40.0% |
| AGCCAAAGCAAATCCCTATA+TGG | - | chr3_1:4620643-4620662 | None:intergenic | 40.0% | |
| ! | GGATTTGCTTTGGCTTCAAT+TGG | + | chr3_1:4620648-4620667 | Msa0345390:intron | 40.0% |
| !! | GGATTAGTTAGTTCTTAGGC+CGG | + | chr3_1:4620703-4620722 | Msa0345390:intron | 40.0% |
| ! | GTCAAAGCATCCCTAAAAGA+TGG | - | chr3_1:4620849-4620868 | None:intergenic | 40.0% |
| GATTCAATCATGTGACTCCT+TGG | + | chr3_1:4620925-4620944 | Msa0345390:intron | 40.0% | |
| GGGAGGTTTAGAGAAAAACA+AGG | + | chr3_1:4621294-4621313 | Msa0345390:intron | 40.0% | |
| ! | TACTTGACTTTTTACGGCCT+TGG | - | chr3_1:4621671-4621690 | None:intergenic | 40.0% |
| TTAACTTTCTTCTGTCCGTG+TGG | - | chr3_1:4621717-4621736 | None:intergenic | 40.0% | |
| !! | TTCCTCCACGTGCTTATTTT+TGG | - | chr3_1:4621883-4621902 | None:intergenic | 40.0% |
| GAAGATCTATCCGAAGATGA+AGG | + | chr3_1:4621915-4621934 | Msa0345390:CDS | 40.0% | |
| AGATCTATCCGAAGATGAAG+GGG | + | chr3_1:4621917-4621936 | Msa0345390:CDS | 40.0% | |
| ! | GTGAAGGTTGTAAAGCATTC+AGG | + | chr3_1:4622051-4622070 | Msa0345390:CDS | 40.0% |
| ! | AGGTTGTAAAGCATTCAGGA+TGG | + | chr3_1:4622055-4622074 | Msa0345390:CDS | 40.0% |
| ! | GAGTGTTTCTGATGAGTTGT+TGG | + | chr3_1:4622100-4622119 | Msa0345390:CDS | 40.0% |
| ! | TGATGAGTTGTTGGTAAGCT+AGG | + | chr3_1:4622109-4622128 | Msa0345390:intron | 40.0% |
| GATCAAGGGAGAGACAAAAA+AGG | + | chr3_1:4622272-4622291 | Msa0345390:CDS | 40.0% | |
| CTTGTTACAGCTAGCAGAAA+AGG | + | chr3_1:4622437-4622456 | Msa0345390:intron | 40.0% | |
| ! | CTTATAAGTGTCGCGACAAA+AGG | + | chr3_1:4622504-4622523 | Msa0345390:CDS | 40.0% |
| TCATACAAAGCGACAAAGAG+AGG | - | chr3_1:4622729-4622748 | None:intergenic | 40.0% | |
| ! | AAAGCTCAAGTTGCTCAGAA+AGG | + | chr3_1:4622797-4622816 | Msa0345390:CDS | 40.0% |
| ! | AAGCTCAAGTTGCTCAGAAA+GGG | + | chr3_1:4622798-4622817 | Msa0345390:CDS | 40.0% |
| TTTGCATCCCTGTTCTTTGA+GGG | - | chr3_1:4622830-4622849 | None:intergenic | 40.0% | |
| TCAAAGAACAGGGATGCAAA+GGG | + | chr3_1:4622830-4622849 | Msa0345390:CDS | 40.0% | |
| GTGGAATAGCATAGCATTGT+AGG | - | chr3_1:4623513-4623532 | None:intergenic | 40.0% | |
| AAAATAAGAGGGTTTGGACC+TGG | + | chr3_1:4623673-4623692 | Msa0345390:intron | 40.0% | |
| AAATAAGAGGGTTTGGACCT+GGG | + | chr3_1:4623674-4623693 | Msa0345390:intron | 40.0% | |
| ! | TGGTTCTATTTGGAGAAGCA+TGG | - | chr3_1:4623701-4623720 | None:intergenic | 40.0% |
| GTGAAACCTAAAACTCTGAC+AGG | - | chr3_1:4623726-4623745 | None:intergenic | 40.0% | |
| ! | AAGCCTTCTTTTCAGCGTTA+GGG | + | chr3_1:4623866-4623885 | Msa0345390:CDS | 40.0% |
| AACAGAATTAAGCAGGACTC+GGG | - | chr3_1:4623987-4624006 | None:intergenic | 40.0% | |
| CAACAGAATTAAGCAGGACT+CGG | - | chr3_1:4623988-4624007 | None:intergenic | 40.0% | |
| AGCATTTACTTACGGACACT+TGG | + | chr3_1:4624083-4624102 | Msa0345390:intron | 40.0% | |
| GCATTTACTTACGGACACTT+GGG | + | chr3_1:4624084-4624103 | Msa0345390:intron | 40.0% | |
| GCTTAGACAAATTGCCAAAC+TGG | + | chr3_1:4624364-4624383 | Msa0345390:intron | 40.0% | |
| TTGCTTGGATTTGGATATGC+AGG | + | chr3_1:4624598-4624617 | Msa0345390:intron | 40.0% | |
| AGAGGATGAACAACCTTCTT+GGG | + | chr3_1:4624643-4624662 | Msa0345390:CDS | 40.0% | |
| GCTGACAAGTTCGAGAATAA+AGG | + | chr3_1:4624688-4624707 | Msa0345390:CDS | 40.0% | |
| TGAGCAACATGATGAGTACA+AGG | - | chr3_1:4624776-4624795 | None:intergenic | 40.0% | |
| TTCATCGGAACTGCTATCTT+GGG | - | chr3_1:4624840-4624859 | None:intergenic | 40.0% | |
| AGCAGTTCCGATGAAGATTA+AGG | + | chr3_1:4624845-4624864 | Msa0345390:CDS | 40.0% | |
| !! | CGTGTTTCTAGTGGGATAAT+CGG | + | chr3_1:4624894-4624913 | Msa0345390:three_prime_UTR | 40.0% |
| CCGAAAAGTAATCGAAAGCT+TGG | + | chr3_1:4625138-4625157 | Msa0345390:three_prime_UTR | 40.0% | |
| TCCTTGATATTGTAACCCCC+AGG | + | chr3_1:4620516-4620535 | Msa0345390:intron | 45.0% | |
| CCTTGATATTGTAACCCCCA+GGG | + | chr3_1:4620517-4620536 | Msa0345390:intron | 45.0% | |
| CTTGATATTGTAACCCCCAG+GGG | + | chr3_1:4620518-4620537 | Msa0345390:intron | 45.0% | |
| GTAGTGTAGGCTTGAGACAT+GGG | + | chr3_1:4620550-4620569 | Msa0345390:intron | 45.0% | |
| !! | CAGTTTTGGCCACCACATTA+AGG | - | chr3_1:4620788-4620807 | None:intergenic | 45.0% |
| !! | ACCGTTCTACTAGTTTGCTG+TGG | + | chr3_1:4621077-4621096 | Msa0345390:intron | 45.0% |
| GCCACAGCAAACTAGTAGAA+CGG | - | chr3_1:4621081-4621100 | None:intergenic | 45.0% | |
| GTAGGTAAAGTTTGTAGGGG+AGG | + | chr3_1:4621277-4621296 | Msa0345390:intron | 45.0% | |
| CATGGCTGAAGAAACACAAG+TGG | + | chr3_1:4621602-4621621 | Msa0345390:exon | 45.0% | |
| GAAACACAAGTGGTTGAGCA+TGG | + | chr3_1:4621612-4621631 | Msa0345390:CDS | 45.0% | |
| CTACCAAACTTCCTCTTTCC+CGG | - | chr3_1:4621645-4621664 | None:intergenic | 45.0% | |
| AGGAAGTTTGGTAGGAACCA+AGG | + | chr3_1:4621651-4621670 | Msa0345390:CDS | 45.0% | |
| ! | TGTGGTGGCTTCATCACTTT+TGG | - | chr3_1:4621699-4621718 | None:intergenic | 45.0% |
| AAAGTGATGAAGCCACCACA+CGG | + | chr3_1:4621699-4621718 | Msa0345390:CDS | 45.0% | |
| TTCTAGTACTCCCAGTAGCA+GGG | - | chr3_1:4621821-4621840 | None:intergenic | 45.0% | |
| !! | TACTGGGAGTACTAGAAGTG+TGG | + | chr3_1:4621824-4621843 | Msa0345390:CDS | 45.0% |
| GTGGCATCTATGAAGACTAG+AGG | + | chr3_1:4621843-4621862 | Msa0345390:CDS | 45.0% | |
| CACCAAAAATAAGCACGTGG+AGG | + | chr3_1:4621878-4621897 | Msa0345390:CDS | 45.0% | |
| TTCTGCTACCCCTTCATCTT+CGG | - | chr3_1:4621928-4621947 | None:intergenic | 45.0% | |
| ! | CTCTGAGGATGAAGATGATG+AGG | + | chr3_1:4621995-4622014 | Msa0345390:CDS | 45.0% |
| TGAGGATGAAGATGATGAGG+AGG | + | chr3_1:4621998-4622017 | Msa0345390:CDS | 45.0% | |
| TATAGAAAAGCTCGCGGAAG+AGG | + | chr3_1:4622236-4622255 | Msa0345390:CDS | 45.0% | |
| TATCTATCGGGTAAGCAGTC+TGG | + | chr3_1:4622397-4622416 | Msa0345390:intron | 45.0% | |
| TGCGCGTCCAAATAATTAGC+AGG | - | chr3_1:4622474-4622493 | None:intergenic | 45.0% | |
| ! | ATAAGTGTCGCGACAAAAGG+AGG | + | chr3_1:4622507-4622526 | Msa0345390:CDS | 45.0% |
| TACAAAGCGACAAAGAGAGG+AGG | - | chr3_1:4622726-4622745 | None:intergenic | 45.0% | |
| TTGCATCCCTGTTCTTTGAG+GGG | - | chr3_1:4622829-4622848 | None:intergenic | 45.0% | |
| CTTTGCATCCCTGTTCTTTG+AGG | - | chr3_1:4622831-4622850 | None:intergenic | 45.0% | |
| CTCAAAGAACAGGGATGCAA+AGG | + | chr3_1:4622829-4622848 | Msa0345390:CDS | 45.0% | |
| TGAGCTGCATACAACCTCTT+TGG | + | chr3_1:4623104-4623123 | Msa0345390:intron | 45.0% | |
| GAGCTGCATACAACCTCTTT+GGG | + | chr3_1:4623105-4623124 | Msa0345390:intron | 45.0% | |
| ATACAACCTCTTTGGGCCTT+TGG | + | chr3_1:4623112-4623131 | Msa0345390:intron | 45.0% | |
| ATCCTCCTCACTGGAAATAG+AGG | - | chr3_1:4623347-4623366 | None:intergenic | 45.0% | |
| ! | CTGACAGGGATGGTTCTATT+TGG | - | chr3_1:4623711-4623730 | None:intergenic | 45.0% |
| ! | ACCATCCCTGTCAGAGTTTT+AGG | + | chr3_1:4623717-4623736 | Msa0345390:intron | 45.0% |
| ACCTAAAACTCTGACAGGGA+TGG | - | chr3_1:4623721-4623740 | None:intergenic | 45.0% | |
| CGCTGAAAAGAAGGCTTCTT+TGG | - | chr3_1:4623863-4623882 | None:intergenic | 45.0% | |
| ! | GAAGCCTTCTTTTCAGCGTT+AGG | + | chr3_1:4623865-4623884 | Msa0345390:CDS | 45.0% |
| CTTCCCTAACGCTGAAAAGA+AGG | - | chr3_1:4623872-4623891 | None:intergenic | 45.0% | |
| ATCACCTTTGCACCAATAGC+TGG | - | chr3_1:4623895-4623914 | None:intergenic | 45.0% | |
| GCCAATGCAAGCACAAACAA+GGG | + | chr3_1:4624620-4624639 | Msa0345390:CDS | 45.0% | |
| ! | TCCCTTGTTTGTGCTTGCAT+TGG | - | chr3_1:4624624-4624643 | None:intergenic | 45.0% |
| GAGAGGATGAACAACCTTCT+TGG | + | chr3_1:4624642-4624661 | Msa0345390:CDS | 45.0% | |
| CATGATGAGTACAAGGTAGC+TGG | - | chr3_1:4624769-4624788 | None:intergenic | 45.0% | |
| TCATCATGTTGCTCAACTGC+AGG | + | chr3_1:4624781-4624800 | Msa0345390:intron | 45.0% | |
| CATCATGTTGCTCAACTGCA+GGG | + | chr3_1:4624782-4624801 | Msa0345390:intron | 45.0% | |
| CTTCATCGGAACTGCTATCT+TGG | - | chr3_1:4624841-4624860 | None:intergenic | 45.0% | |
| !! | AGCATCAGCGTGTTTCTAGT+GGG | + | chr3_1:4624886-4624905 | Msa0345390:three_prime_UTR | 45.0% |
| ! | GGAGAAACTTGATGGCTGAT+TGG | + | chr3_1:4624974-4624993 | Msa0345390:three_prime_UTR | 45.0% |
| ! | AAACTTGATGGCTGATTGGC+TGG | + | chr3_1:4624978-4624997 | Msa0345390:three_prime_UTR | 45.0% |
| !!! | TTTATTTATTTTGATTTTAT+TGG | + | chr3_1:4620030-4620049 | Msa0345390:intron | 5.0% |
| !!! | TTTTTTTTTTTTATAAAACT+TGG | - | chr3_1:4620732-4620751 | None:intergenic | 5.0% |
| !!! | ATATTATTTTCTTTTTTATT+AGG | + | chr3_1:4624310-4624329 | Msa0345390:intron | 5.0% |
| !! | GAAAGTGTCGGTTACCGAAC+AGG | - | chr3_1:4620216-4620235 | None:intergenic | 50.0% |
| CCCTGGGGGTTACAATATCA+AGG | - | chr3_1:4620520-4620539 | None:intergenic | 50.0% | |
| TATTGTAACCCCCAGGGGTT+TGG | + | chr3_1:4620523-4620542 | Msa0345390:intron | 50.0% | |
| GGTAGTGTAGGCTTGAGACA+TGG | + | chr3_1:4620549-4620568 | Msa0345390:intron | 50.0% | |
| ! | ATGGGAGTGTGTTCCTCTCA+AGG | + | chr3_1:4620568-4620587 | Msa0345390:intron | 50.0% |
| !! | TATATGGACTGGCCCGACAA+AGG | - | chr3_1:4620627-4620646 | None:intergenic | 50.0% |
| TTTGTCGGGCCAGTCCATAT+AGG | + | chr3_1:4620626-4620645 | Msa0345390:intron | 50.0% | |
| TTGTCGGGCCAGTCCATATA+GGG | + | chr3_1:4620627-4620646 | Msa0345390:intron | 50.0% | |
| TCATGTGACTCCTTGGGTCA+TGG | + | chr3_1:4620932-4620951 | Msa0345390:intron | 50.0% | |
| ATTGAACAGGCCATGACCCA+AGG | - | chr3_1:4620945-4620964 | None:intergenic | 50.0% | |
| CGGGAAAGAGGAAGTTTGGT+AGG | + | chr3_1:4621643-4621662 | Msa0345390:CDS | 50.0% | |
| ACTTTCTTCTGTCCGTGTGG+TGG | - | chr3_1:4621714-4621733 | None:intergenic | 50.0% | |
| TCTAGTACTCCCAGTAGCAG+GGG | - | chr3_1:4621820-4621839 | None:intergenic | 50.0% | |
| CTTCTAGTACTCCCAGTAGC+AGG | - | chr3_1:4621822-4621841 | None:intergenic | 50.0% | |
| GAAGATGAAGGGGTAGCAGA+AGG | + | chr3_1:4621927-4621946 | Msa0345390:CDS | 50.0% | |
| GAGACAGAGCGCAAGATCAA+GGG | + | chr3_1:4622258-4622277 | Msa0345390:CDS | 50.0% | |
| ! | TCAAGTTGCTCAGAAAGGGC+TGG | + | chr3_1:4622802-4622821 | Msa0345390:CDS | 50.0% |
| GCTACAACCACTATGGCCAA+AGG | - | chr3_1:4623131-4623150 | None:intergenic | 50.0% | |
| CTCACTGGAAATAGAGGAGG+AGG | - | chr3_1:4623341-4623360 | None:intergenic | 50.0% | |
| CTCCTCCTCTATTTCCAGTG+AGG | + | chr3_1:4623339-4623358 | Msa0345390:intron | 50.0% | |
| CTCCTCACTGGAAATAGAGG+AGG | - | chr3_1:4623344-4623363 | None:intergenic | 50.0% | |
| CTCCTCTATTTCCAGTGAGG+AGG | + | chr3_1:4623342-4623361 | Msa0345390:intron | 50.0% | |
| TGAAGGATCATCCTCCTCAC+TGG | - | chr3_1:4623356-4623375 | None:intergenic | 50.0% | |
| ! | ATTTGGAGAAGCATGGTCCC+AGG | - | chr3_1:4623694-4623713 | None:intergenic | 50.0% |
| GAAGCCAGCTATTGGTGCAA+AGG | + | chr3_1:4623888-4623907 | Msa0345390:CDS | 50.0% | |
| GGCCAATGCAAGCACAAACA+AGG | + | chr3_1:4624619-4624638 | Msa0345390:intron | 50.0% | |
| TGCAAGCACAAACAAGGGAG+AGG | + | chr3_1:4624625-4624644 | Msa0345390:CDS | 50.0% | |
| !! | CAGCATCAGCGTGTTTCTAG+TGG | + | chr3_1:4624885-4624904 | Msa0345390:three_prime_UTR | 50.0% |
| ATGAACGGCGGAAGTGACAG+CGG | - | chr3_1:4619787-4619806 | None:intergenic | 55.0% | |
| CTTCAATTGGGCCCTGCTAG+TGG | + | chr3_1:4620661-4620680 | Msa0345390:intron | 55.0% | |
| AATTGGGCCCTGCTAGTGGA+CGG | + | chr3_1:4620665-4620684 | Msa0345390:intron | 55.0% | |
| AATCCCACCGTCCACTAGCA+GGG | - | chr3_1:4620675-4620694 | None:intergenic | 55.0% | |
| GGTTGAGCATGGAAGTGAGC+CGG | + | chr3_1:4621623-4621642 | Msa0345390:CDS | 55.0% | |
| GTTGAGCATGGAAGTGAGCC+GGG | + | chr3_1:4621624-4621643 | Msa0345390:CDS | 55.0% | |
| ATGGAAGTGAGCCGGGAAAG+AGG | + | chr3_1:4621631-4621650 | Msa0345390:CDS | 55.0% | |
| GAGCCGGGAAAGAGGAAGTT+TGG | + | chr3_1:4621639-4621658 | Msa0345390:CDS | 55.0% | |
| AGACAACTGCCCCTGCTACT+GGG | + | chr3_1:4621808-4621827 | Msa0345390:CDS | 55.0% | |
| GAGGAGGATGAGATTCAGCC+AGG | + | chr3_1:4622014-4622033 | Msa0345390:CDS | 55.0% | |
| GGAGACAGAGCGCAAGATCA+AGG | + | chr3_1:4622257-4622276 | Msa0345390:CDS | 55.0% | |
| GCTGGACCCCTCAAAGAACA+GGG | + | chr3_1:4622820-4622839 | Msa0345390:CDS | 55.0% | |
| CTATGGCCAAAGGCCCAAAG+AGG | - | chr3_1:4623121-4623140 | None:intergenic | 55.0% | |
| CTTTGGGCCTTTGGCCATAG+TGG | + | chr3_1:4623121-4623140 | Msa0345390:intron | 55.0% | |
| GCGTTAGGGAAGCCAGCTAT+TGG | + | chr3_1:4623880-4623899 | Msa0345390:CDS | 55.0% | |
| ! | TCGCGTAATGGAGCCCAAGA+AGG | - | chr3_1:4624659-4624678 | None:intergenic | 55.0% |
| !! | ATGGCTGATTGGCTGGCCTT+TGG | + | chr3_1:4624985-4625004 | Msa0345390:three_prime_UTR | 55.0% |
| GAAGTGACAGCGGCTGGGAA+AGG | - | chr3_1:4619777-4619796 | None:intergenic | 60.0% | |
| ACTACCACGCCAAACCCCTG+GGG | - | chr3_1:4620535-4620554 | None:intergenic | 60.0% | |
| CACTACCACGCCAAACCCCT+GGG | - | chr3_1:4620536-4620555 | None:intergenic | 60.0% | |
| ACACTACCACGCCAAACCCC+TGG | - | chr3_1:4620537-4620556 | None:intergenic | 60.0% | |
| ! | GGGGTTTGGCGTGGTAGTGT+AGG | + | chr3_1:4620537-4620556 | Msa0345390:intron | 60.0% |
| CAATCCCACCGTCCACTAGC+AGG | - | chr3_1:4620676-4620695 | None:intergenic | 60.0% | |
| ! | CTGCTAGTGGACGGTGGGAT+TGG | + | chr3_1:4620674-4620693 | Msa0345390:intron | 60.0% |
| !! | GGACGGTGGGATTGGTTCTC+TGG | + | chr3_1:4620682-4620701 | Msa0345390:intron | 60.0% |
| GAGACAACTGCCCCTGCTAC+TGG | + | chr3_1:4621807-4621826 | Msa0345390:CDS | 60.0% | |
| GGCTGGACCCCTCAAAGAAC+AGG | + | chr3_1:4622819-4622838 | Msa0345390:CDS | 60.0% | |
| TAACCCCCAGGGGTTTGGCG+TGG | + | chr3_1:4620528-4620547 | Msa0345390:intron | 65.0% | |
| CTACCACGCCAAACCCCTGG+GGG | - | chr3_1:4620534-4620553 | None:intergenic | 65.0% | |
| CGGCGGAAGTGACAGCGGCT+GGG | - | chr3_1:4619782-4619801 | None:intergenic | 70.0% | |
| ACGGCGGAAGTGACAGCGGC+TGG | - | chr3_1:4619783-4619802 | None:intergenic | 70.0% | |
| ! | TGGGCCCTGCTAGTGGACGG+TGG | + | chr3_1:4620668-4620687 | Msa0345390:intron | 70.0% |
| ! | GGGCCCTGCTAGTGGACGGT+GGG | + | chr3_1:4620669-4620688 | Msa0345390:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 4619758 | 4625269 | 4619758 | ID=Msa0345390;Name=Msa0345390 |
| chr3_1 | mRNA | 4619758 | 4625269 | 4619758 | ID=Msa0345390-mRNA-1;Parent=Msa0345390;Name=Msa0345390-mRNA-1;_AED=0.06;_eAED=0.06;_QI=127|1|1|1|0.87|0.77|9|404|340 |
| chr3_1 | exon | 4619758 | 4619864 | 4619758 | ID=Msa0345390-mRNA-1:exon:1475;Parent=Msa0345390-mRNA-1 |
| chr3_1 | exon | 4621583 | 4622121 | 4621583 | ID=Msa0345390-mRNA-1:exon:1476;Parent=Msa0345390-mRNA-1 |
| chr3_1 | exon | 4622204 | 4622305 | 4622204 | ID=Msa0345390-mRNA-1:exon:1477;Parent=Msa0345390-mRNA-1 |
| chr3_1 | exon | 4622447 | 4622528 | 4622447 | ID=Msa0345390-mRNA-1:exon:1478;Parent=Msa0345390-mRNA-1 |
| chr3_1 | exon | 4622657 | 4622676 | 4622657 | ID=Msa0345390-mRNA-1:exon:1479;Parent=Msa0345390-mRNA-1 |
| chr3_1 | exon | 4622791 | 4622851 | 4622791 | ID=Msa0345390-mRNA-1:exon:1480;Parent=Msa0345390-mRNA-1 |
| chr3_1 | exon | 4623845 | 4623909 | 4623845 | ID=Msa0345390-mRNA-1:exon:1481;Parent=Msa0345390-mRNA-1 |
| chr3_1 | exon | 4624620 | 4624730 | 4624620 | ID=Msa0345390-mRNA-1:exon:1482;Parent=Msa0345390-mRNA-1 |
| chr3_1 | exon | 4624803 | 4625269 | 4624803 | ID=Msa0345390-mRNA-1:exon:1483;Parent=Msa0345390-mRNA-1 |
| chr3_1 | five_prime_UTR | 4619758 | 4619864 | 4619758 | ID=Msa0345390-mRNA-1:five_prime_utr;Parent=Msa0345390-mRNA-1 |
| chr3_1 | five_prime_UTR | 4621583 | 4621602 | 4621583 | ID=Msa0345390-mRNA-1:five_prime_utr;Parent=Msa0345390-mRNA-1 |
| chr3_1 | CDS | 4621603 | 4622121 | 4621603 | ID=Msa0345390-mRNA-1:cds;Parent=Msa0345390-mRNA-1 |
| chr3_1 | CDS | 4622204 | 4622305 | 4622204 | ID=Msa0345390-mRNA-1:cds;Parent=Msa0345390-mRNA-1 |
| chr3_1 | CDS | 4622447 | 4622528 | 4622447 | ID=Msa0345390-mRNA-1:cds;Parent=Msa0345390-mRNA-1 |
| chr3_1 | CDS | 4622657 | 4622676 | 4622657 | ID=Msa0345390-mRNA-1:cds;Parent=Msa0345390-mRNA-1 |
| chr3_1 | CDS | 4622791 | 4622851 | 4622791 | ID=Msa0345390-mRNA-1:cds;Parent=Msa0345390-mRNA-1 |
| chr3_1 | CDS | 4623845 | 4623909 | 4623845 | ID=Msa0345390-mRNA-1:cds;Parent=Msa0345390-mRNA-1 |
| chr3_1 | CDS | 4624620 | 4624730 | 4624620 | ID=Msa0345390-mRNA-1:cds;Parent=Msa0345390-mRNA-1 |
| chr3_1 | CDS | 4624803 | 4624865 | 4624803 | ID=Msa0345390-mRNA-1:cds;Parent=Msa0345390-mRNA-1 |
| chr3_1 | three_prime_UTR | 4624866 | 4625269 | 4624866 | ID=Msa0345390-mRNA-1:three_prime_utr;Parent=Msa0345390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
