AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0493570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0493570 MtrunA17_Chr3g0087271 96.673 511 17 0 1 511 1 511 0.0 1024
Msa0493570 MtrunA17_Chr3g0087261 80.822 511 97 1 1 511 1 510 0.0 867
Msa0493570 MtrunA17_Chr6g0482131 55.439 478 209 3 37 510 35 512 0.0 567
Msa0493570 MtrunA17_Chr4g0033311 54.545 495 221 3 20 510 21 515 0.0 565
Msa0493570 MtrunA17_Chr2g0329201 53.693 501 226 4 14 510 9 507 0.0 563
Msa0493570 MtrunA17_Chr4g0033201 52.148 512 238 5 5 510 2 512 0.0 558
Msa0493570 MtrunA17_Chr4g0033321 52.579 504 234 4 10 508 4 507 0.0 555
Msa0493570 MtrunA17_Chr4g0033271 52.695 501 233 3 14 510 11 511 0.0 553
Msa0493570 MtrunA17_Chr3g0088441 52.642 511 231 5 10 510 5 514 0.0 552
Msa0493570 MtrunA17_Chr2g0329191 53.799 487 222 3 27 510 23 509 0.0 549
Msa0493570 MtrunA17_Chr4g0033401 52.277 505 235 4 10 508 4 508 0.0 549
Msa0493570 MtrunA17_Chr6g0482081 55.346 477 208 3 37 508 35 511 0.0 544
Msa0493570 MtrunA17_Chr4g0010501 50.996 502 230 3 11 510 7 494 0.0 544
Msa0493570 MtrunA17_Chr4g0033191 52.818 479 222 3 36 510 41 519 0.0 540
Msa0493570 MtrunA17_Chr6g0482071 54.088 477 215 3 38 510 37 513 0.0 539
Msa0493570 MtrunA17_Chr4g0033341 51.533 522 239 6 1 510 24 543 0.0 536
Msa0493570 MtrunA17_Chr4g0033331 51.919 495 233 4 18 508 20 513 0.0 534
Msa0493570 MtrunA17_Chr2g0329321 50.797 502 220 4 12 510 11 488 0.0 523
Msa0493570 MtrunA17_Chr4g0033261 49.513 513 224 4 8 510 6 493 9.70e-180 514
Msa0493570 MtrunA17_Chr4g0043091 49.582 478 236 3 35 508 25 501 2.43e-172 495
Msa0493570 MtrunA17_Chr4g0033231 49.167 480 214 3 36 510 39 493 2.97e-172 494
Msa0493570 MtrunA17_Chr6g0482941 50.000 504 244 6 9 510 15 512 1.71e-170 491
Msa0493570 MtrunA17_Chr6g0482951 49.901 507 240 7 9 510 15 512 3.06e-169 488
Msa0493570 MtrunA17_Chr5g0430451 48.444 514 229 5 9 510 9 498 1.89e-167 483
Msa0493570 MtrunA17_Chr3g0090131 45.474 475 246 5 39 511 22 485 1.38e-158 460
Msa0493570 MtrunA17_Chr4g0042171 47.401 481 243 6 35 508 21 498 3.44e-158 459
Msa0493570 MtrunA17_Chr3g0090111 44.421 475 250 5 39 511 20 482 4.01e-156 453
Msa0493570 MtrunA17_Chr4g0074561 47.357 473 242 4 43 509 40 511 6.58e-156 454
Msa0493570 MtrunA17_Chr2g0288071 45.972 509 256 5 9 510 46 542 1.67e-152 446
Msa0493570 MtrunA17_Chr4g0006971 46.122 477 239 8 37 508 26 489 1.13e-149 438
Msa0493570 MtrunA17_Chr7g0242691 44.400 500 260 7 16 510 9 495 1.47e-149 438
Msa0493570 MtrunA17_Chr4g0006111 45.418 491 226 7 35 510 62 525 2.17e-149 437
Msa0493570 MtrunA17_Chr2g0288021 45.020 502 266 5 11 508 12 507 2.64e-149 437
Msa0493570 MtrunA17_Chr2g0317821 45.155 485 260 5 28 508 21 503 4.79e-149 437
Msa0493570 MtrunA17_Chr4g0074551 44.942 514 268 6 1 510 22 524 6.89e-149 437
Msa0493570 MtrunA17_Chr2g0317841 44.742 485 262 5 28 508 21 503 2.47e-148 435
Msa0493570 MtrunA17_Chr4g0006131 46.307 501 226 10 24 508 26 499 2.07e-146 429
Msa0493570 MtrunA17_Chr7g0242681 45.549 483 242 10 31 508 33 499 1.28e-142 421
Msa0493570 MtrunA17_Chr1g0195611 43.816 477 246 8 38 508 27 487 2.66e-137 406
Msa0493570 MtrunA17_Chr5g0428831 42.857 483 245 7 37 508 26 488 3.51e-136 404
Msa0493570 MtrunA17_Chr2g0301231 48.565 418 176 7 106 510 1 392 8.30e-131 385
Msa0493570 MtrunA17_Chr3g0087201 50.909 330 157 2 180 508 17 342 1.31e-122 362
Msa0493570 MtrunA17_Chr5g0418871 50.150 333 161 3 59 387 4 335 1.75e-118 352
Msa0493570 MtrunA17_Chr1g0195641 45.178 394 201 6 37 425 26 409 3.00e-118 354
Msa0493570 MtrunA17_Chr7g0234091 41.649 485 252 7 35 510 71 533 3.33e-113 345
Msa0493570 MtrunA17_Chr7g0234111 41.962 479 246 8 39 508 76 531 4.18e-112 342
Msa0493570 MtrunA17_Chr7g0234131 40.664 482 258 9 35 508 71 532 2.24e-107 330
Msa0493570 MtrunA17_Chr7g0230651 42.432 370 181 6 96 455 29 376 1.62e-93 290
Msa0493570 MtrunA17_Chr3g0087191 63.946 147 51 1 35 179 19 165 1.55e-64 207
Msa0493570 MtrunA17_Chr7g0227561 38.722 266 133 2 40 305 48 283 1.44e-61 204
Msa0493570 MtrunA17_Chr7g0236731 44.681 235 114 3 128 356 31 255 1.20e-53 182
Msa0493570 MtrunA17_Chr4g0068871 27.123 424 238 10 95 511 176 535 1.04e-27 117
Msa0493570 MtrunA17_Chr5g0418861 49.398 83 41 1 427 508 8 90 1.41e-21 89.4
Msa0493570 MtrunA17_Chr8g0352881 42.157 102 58 1 261 362 57 157 3.40e-21 90.5
Msa0493570 MtrunA17_Chr8g0352881 52.727 55 25 1 46 100 6 59 8.65e-11 60.5
Msa0493570 MtrunA17_Chr2g0288031 60.714 56 22 0 189 244 5 60 2.81e-17 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0493570 AT2G44480.1 53.878 477 217 2 35 508 32 508 0.0 563
Msa0493570 AT2G44480.3 53.878 477 217 2 35 508 63 539 0.0 562
Msa0493570 AT5G44640.1 48.297 499 248 5 16 508 7 501 3.89e-179 513
Msa0493570 AT2G44450.1 50.000 474 230 3 38 508 31 500 1.45e-178 511
Msa0493570 AT5G42260.1 48.800 500 246 5 9 504 4 497 1.80e-177 509
Msa0493570 AT3G60130.1 51.046 478 225 5 38 511 30 502 2.98e-175 503
Msa0493570 AT2G25630.1 46.906 501 239 6 12 508 6 483 1.26e-168 486
Msa0493570 AT5G54570.1 49.896 481 232 5 35 508 27 505 1.04e-166 483
Msa0493570 AT1G26560.1 48.017 479 243 4 35 508 29 506 2.72e-165 478
Msa0493570 AT3G18080.1 49.061 479 238 4 34 510 35 509 1.28e-163 474
Msa0493570 AT2G44480.2 52.956 406 188 2 106 508 1 406 1.30e-163 470
Msa0493570 AT5G24550.1 45.276 508 269 7 11 510 5 511 3.72e-159 463
Msa0493570 AT3G60140.1 47.205 483 247 7 35 510 23 504 7.04e-159 464
Msa0493570 AT3G18070.3 47.579 475 235 5 38 510 30 492 9.69e-159 461
Msa0493570 AT3G18070.1 47.170 477 244 5 36 510 28 498 1.23e-157 458
Msa0493570 AT1G47600.2 47.639 487 237 8 28 510 38 510 5.30e-156 454
Msa0493570 AT1G47600.1 47.844 487 237 9 28 510 38 511 1.29e-155 453
Msa0493570 AT1G61820.1 47.346 471 242 4 43 508 35 504 6.07e-154 449
Msa0493570 AT1G51470.1 47.228 487 240 9 28 510 38 511 9.26e-154 449
Msa0493570 AT5G24540.1 45.669 508 267 7 11 510 5 511 2.64e-153 448
Msa0493570 AT2G32860.2 46.737 475 242 7 43 508 99 571 6.18e-152 447
Msa0493570 AT2G32860.1 46.737 475 241 8 43 508 99 570 7.56e-151 445
Msa0493570 AT1G02850.2 45.263 475 241 7 38 508 26 485 1.06e-150 440
Msa0493570 AT2G44470.3 45.963 483 247 9 38 510 29 507 1.15e-150 443
Msa0493570 AT4G27830.1 43.787 507 255 9 9 508 1 484 6.34e-150 439
Msa0493570 AT2G44490.1 45.549 483 249 9 37 508 13 492 8.12e-150 440
Msa0493570 AT1G61810.1 44.898 490 260 5 28 508 19 507 2.93e-148 435
Msa0493570 AT3G60120.1 45.738 481 252 8 37 510 13 491 4.31e-148 435
Msa0493570 AT4G21760.2 43.849 504 271 7 12 510 27 523 7.72e-148 435
Msa0493570 AT3G60130.2 50.000 416 199 5 100 511 40 450 5.58e-147 429
Msa0493570 AT5G25980.2 44.727 512 262 12 12 508 17 522 1.61e-146 431
Msa0493570 AT1G02850.5 43.373 498 240 8 38 508 26 508 4.04e-146 429
Msa0493570 AT1G02850.4 43.287 499 240 9 38 508 26 509 2.94e-144 425
Msa0493570 AT1G61810.3 45.073 477 252 5 28 495 19 494 4.73e-144 425
Msa0493570 AT5G36890.1 43.763 473 251 6 40 508 18 479 8.00e-144 422
Msa0493570 AT5G36890.2 43.763 473 251 6 40 508 18 479 1.13e-143 422
Msa0493570 AT4G27820.1 44.948 485 240 8 32 508 17 482 1.93e-143 422
Msa0493570 AT5G54570.3 49.180 427 209 4 35 455 27 451 6.98e-143 419
Msa0493570 AT5G54570.2 50.000 410 196 5 106 508 1 408 2.84e-141 414
Msa0493570 AT3G60130.3 49.279 416 191 6 100 511 40 439 7.30e-141 414
Msa0493570 AT5G26000.1 43.822 518 274 11 1 508 1 511 3.28e-140 415
Msa0493570 AT2G44460.1 46.234 478 248 8 38 508 29 504 5.90e-140 416
Msa0493570 AT4G21760.1 42.659 504 267 8 12 510 27 513 2.08e-139 413
Msa0493570 AT1G02850.1 43.368 475 223 8 38 508 26 458 5.35e-139 409
Msa0493570 AT1G75940.1 44.033 486 258 9 38 511 37 520 7.68e-138 409
Msa0493570 AT4G22100.1 41.667 504 264 8 9 508 5 482 1.42e-137 407
Msa0493570 AT3G62750.2 42.353 510 255 10 5 508 23 499 1.87e-137 407
Msa0493570 AT3G21370.1 43.326 487 260 10 37 511 32 514 2.81e-137 407
Msa0493570 AT3G62750.1 42.545 503 250 10 12 508 4 473 9.13e-137 405
Msa0493570 AT2G44480.4 59.425 313 124 2 35 345 63 374 1.21e-136 400
Msa0493570 AT3G03640.1 44.444 486 258 9 35 510 31 514 2.14e-136 405
Msa0493570 AT1G52400.3 43.301 515 271 11 8 508 8 515 2.24e-136 405
Msa0493570 AT1G52400.1 43.301 515 271 11 8 508 8 515 2.24e-136 405
Msa0493570 AT3G09260.1 43.685 483 259 8 38 511 35 513 6.04e-136 404
Msa0493570 AT1G45191.4 43.220 472 250 6 38 508 29 483 5.06e-135 400
Msa0493570 AT1G45191.6 43.396 477 253 8 38 508 29 494 2.29e-134 399
Msa0493570 AT1G45191.2 42.918 473 256 7 38 508 29 489 5.01e-134 398
Msa0493570 AT1G66280.1 42.466 511 280 9 9 511 9 513 1.17e-133 398
Msa0493570 AT1G45191.1 42.562 484 259 7 38 508 29 506 7.62e-133 396
Msa0493570 AT1G60090.2 41.841 478 252 7 38 508 24 482 5.08e-132 393
Msa0493570 AT5G28510.1 40.996 522 284 11 9 511 6 522 5.86e-132 394
Msa0493570 AT1G66270.1 42.400 500 272 10 21 511 21 513 3.35e-131 391
Msa0493570 AT1G60090.1 41.372 481 257 7 38 508 24 489 6.79e-131 390
Msa0493570 AT5G24540.2 45.233 451 239 6 11 454 5 454 4.57e-130 386
Msa0493570 AT5G25980.3 43.982 457 237 10 12 455 17 467 1.83e-128 382
Msa0493570 AT5G25980.1 43.982 457 237 10 12 455 17 467 1.83e-128 382
Msa0493570 AT1G66270.2 42.200 500 271 11 21 511 21 511 4.72e-128 383
Msa0493570 AT3G62740.1 41.104 489 255 9 29 508 14 478 5.95e-127 380
Msa0493570 AT2G44470.1 44.601 426 223 8 38 454 29 450 1.25e-125 374
Msa0493570 AT1G61810.5 45.343 408 217 4 106 508 1 407 6.58e-125 372
Msa0493570 AT1G02850.3 44.608 408 191 6 38 419 26 424 3.94e-124 370
Msa0493570 AT2G44450.2 48.442 353 177 2 157 508 1 349 3.12e-123 365
Msa0493570 AT3G60140.2 46.292 391 203 6 35 419 23 412 4.01e-123 368
Msa0493570 AT1G61810.4 45.885 401 208 4 28 419 19 419 1.01e-122 366
Msa0493570 AT4G27830.2 43.902 410 209 7 106 508 1 396 2.15e-122 365
Msa0493570 AT3G62750.4 42.358 458 226 9 5 457 23 447 1.36e-121 365
Msa0493570 AT5G26000.2 42.981 463 249 9 1 455 1 456 1.40e-121 364
Msa0493570 AT3G18070.4 52.229 314 147 2 38 351 30 340 8.36e-117 350
Msa0493570 AT4G27820.2 44.526 411 206 7 106 508 1 397 1.01e-116 350
Msa0493570 AT4G27820.3 44.526 411 206 7 106 508 1 397 1.01e-116 350
Msa0493570 AT1G52400.2 42.299 461 244 10 8 454 8 460 5.55e-115 348
Msa0493570 AT3G62740.2 43.860 399 198 7 29 419 14 394 2.55e-113 342
Msa0493570 AT1G61820.3 46.281 363 190 3 150 508 4 365 1.02e-111 336
Msa0493570 AT3G62750.7 44.744 371 180 5 12 377 4 354 1.32e-111 336
Msa0493570 AT3G62750.8 44.744 371 180 5 12 377 4 354 1.32e-111 336
Msa0493570 AT3G62750.3 44.681 376 183 5 5 375 23 378 4.87e-111 337
Msa0493570 AT3G62750.6 42.298 409 209 8 106 508 1 388 1.78e-109 332
Msa0493570 AT3G62750.5 42.298 409 209 8 106 508 1 388 1.78e-109 332
Msa0493570 AT2G44470.2 47.576 330 166 5 38 363 29 355 3.65e-109 330
Msa0493570 AT1G45191.3 48.742 318 158 2 38 355 29 341 3.26e-107 326
Msa0493570 AT1G45191.5 48.742 318 158 2 38 355 29 341 3.65e-107 326
Msa0493570 AT5G48375.1 41.096 438 192 8 38 473 38 411 5.49e-105 321
Msa0493570 AT1G60270.1 45.266 338 178 2 38 372 24 357 2.37e-104 317
Msa0493570 AT2G44480.5 47.841 301 156 1 209 508 2 302 3.44e-104 315
Msa0493570 AT3G18070.2 46.749 323 167 3 190 510 102 421 1.95e-99 306
Msa0493570 AT3G18070.2 45.570 79 42 1 36 114 28 105 3.10e-14 75.1
Msa0493570 AT2G44460.2 45.404 359 190 6 155 508 1 358 5.48e-95 295
Msa0493570 AT1G61810.2 49.291 282 138 2 28 304 19 300 2.79e-92 284
Msa0493570 AT3G18070.7 45.513 312 165 3 201 510 1 309 2.95e-92 284
Msa0493570 AT1G51490.1 42.975 363 183 10 46 401 28 373 1.76e-91 285
Msa0493570 AT1G60270.2 44.815 270 146 1 106 372 1 270 2.09e-81 255
Msa0493570 AT3G18070.5 48.069 233 119 1 190 420 102 334 9.29e-71 229
Msa0493570 AT3G18070.5 45.570 79 42 1 36 114 28 105 1.70e-14 75.5
Msa0493570 AT3G18070.6 46.396 222 117 1 201 420 1 222 1.71e-63 207
Msa0493570 AT5G16580.1 39.236 288 156 5 182 465 27 299 1.03e-60 202
Msa0493570 AT3G06510.2 26.941 438 255 15 95 511 153 546 2.65e-24 107
Msa0493570 AT3G06510.1 26.415 424 241 13 95 511 153 512 1.91e-23 104

Find 124 sgRNAs with CRISPR-Local

Find 442 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCTTCCTTTGTGAATTT+TGG 0.030488 3_4:+18826392 None:intergenic
GCCCATAAGCTTTATTTAAT+TGG 0.136556 3_4:+18823201 None:intergenic
TGATCATATTACCTGATATT+TGG 0.172492 3_4:+18827130 None:intergenic
ATAAAGATTATGAAAGAAAT+TGG 0.173109 3_4:-18828869 Msa0493570:CDS
ATATTTGGCCTTATACAATT+TGG 0.224460 3_4:+18827145 None:intergenic
CCTGTTTCATACACCATTAA+TGG 0.239205 3_4:-18827293 Msa0493570:CDS
TACCAATTAAATAAAGCTTA+TGG 0.239927 3_4:-18823203 Msa0493570:three_prime_UTR
CCAGTGTACATTACTGAAAA+TGG 0.258317 3_4:-18825409 Msa0493570:intron
AGCTCTTGAAGATGAATATA+AGG 0.279995 3_4:-18827543 Msa0493570:CDS
AGAGAAAATCAGGAGGAAAA+AGG 0.282118 3_4:+18830769 None:intergenic
ACTTAAGCTTACACTACTTT+AGG 0.287213 3_4:+18827509 None:intergenic
TTCATATGTATTGAGATAAT+TGG 0.297420 3_4:-18823229 Msa0493570:three_prime_UTR
ATGGGAGAGGACCAAGTATA+TGG 0.302102 3_4:-18829278 Msa0493570:CDS
GCCTCCATGGTATCCATTAA+TGG 0.303144 3_4:+18827280 None:intergenic
TGAAGTAGGTCATGTTGATA+TGG 0.309455 3_4:+18826291 None:intergenic
CCTTTGTAACATTGTTTCAT+TGG 0.325125 3_4:-18827577 Msa0493570:CDS
TGATCCTAATACCATCTTTA+CGG 0.327105 3_4:+18824093 None:intergenic
GCTTCAAGACATTTGGAGAT+AGG 0.339805 3_4:-18827343 Msa0493570:CDS
GGATAGTGACCATATGTAAT+TGG 0.352960 3_4:+18826449 None:intergenic
GAAGGAGCATCAAATATAGA+TGG 0.358288 3_4:-18829297 Msa0493570:CDS
TAGCCCGTAAAGATGGTATT+AGG 0.367113 3_4:-18824097 Msa0493570:CDS
CCAAGGATAATATCATTGAT+TGG 0.371514 3_4:+18826426 None:intergenic
CACATGTTGTGATGCAGTTC+CGG 0.372703 3_4:+18830827 None:intergenic
ACCAATTAAATAAAGCTTAT+GGG 0.376269 3_4:-18823202 Msa0493570:three_prime_UTR
GTACCATAGGCTCATCAAAA+AGG 0.377579 3_4:-18826738 Msa0493570:intron
CCAATTCCAAAGAGAAAATC+AGG 0.378563 3_4:+18830759 None:intergenic
GACCATAGCAGTGGTAATAT+TGG 0.378836 3_4:-18829066 Msa0493570:CDS
TGCTGCAGCCAAATTGTATA+AGG 0.379528 3_4:-18827153 Msa0493570:CDS
TTGATTGAGCAGAAAAGATT+GGG 0.388568 3_4:-18829089 Msa0493570:intron
CAAGGATAATATCATTGATT+GGG 0.388967 3_4:+18826427 None:intergenic
CCATTAATGGTGTATGAAAC+AGG 0.390045 3_4:+18827293 None:intergenic
GCAGGCTACACGATACGATT+TGG 0.390192 3_4:-18823408 Msa0493570:CDS
CTTTGTAACATTGTTTCATT+GGG 0.391227 3_4:-18827576 Msa0493570:CDS
AATTGGTTCTTCTGCTTACC+AGG 0.392026 3_4:-18830742 Msa0493570:intron
CCAATCAATGATATTATCCT+TGG 0.395301 3_4:-18826426 Msa0493570:CDS
CTTGATTGAGCAGAAAAGAT+TGG 0.402024 3_4:-18829090 Msa0493570:intron
ACATATTTAGAGCATCTTGC+AGG 0.404850 3_4:+18827248 None:intergenic
GTTCATACTTTATTGCTTGA+AGG 0.410047 3_4:+18824042 None:intergenic
TGGAGATAGGGTTAAGCATT+GGG 0.413839 3_4:-18827330 Msa0493570:CDS
TAAAGATTATGAAAGAAATT+GGG 0.423732 3_4:-18828868 Msa0493570:CDS
GATCCTAATACCATCTTTAC+GGG 0.424683 3_4:+18824094 None:intergenic
TCTTTACGGGCTACGTTGAC+TGG 0.425906 3_4:+18824107 None:intergenic
ATTGTATAAGGCCAAATATC+AGG 0.426496 3_4:-18827141 Msa0493570:intron
GGAAGGACCCGTAGCTTTCA+TGG 0.426641 3_4:+18830893 None:intergenic
CTTCAAGACATTTGGAGATA+GGG 0.430530 3_4:-18827342 Msa0493570:CDS
TCGGCAACACTGTTGGAATA+TGG 0.431160 3_4:+18826678 None:intergenic
TTTGCTCATCCAATTACATA+TGG 0.434508 3_4:-18826458 Msa0493570:CDS
ATTCACACCAAGAAAATCAT+AGG 0.436183 3_4:+18826352 None:intergenic
TATGTTGGAAATTGCTCTAC+TGG 0.447346 3_4:-18827230 Msa0493570:CDS
GCTCTTGAAGATGAATATAA+GGG 0.448342 3_4:-18827542 Msa0493570:CDS
ATGAAGAATGGTGTAGCTAT+TGG 0.450804 3_4:-18826124 Msa0493570:CDS
ACTATGCTGCTTCATTCAAT+AGG 0.456329 3_4:-18830794 Msa0493570:CDS
TTGTGCAGACGGATCTGAAC+TGG 0.460149 3_4:-18825498 Msa0493570:intron
TCCATAAATACTTACGAATG+AGG 0.464054 3_4:+18826252 None:intergenic
TTGGAGATAGGGTTAAGCAT+TGG 0.464172 3_4:-18827331 Msa0493570:CDS
TTTCAGGCATTGGTCAATCA+AGG 0.478836 3_4:-18824142 Msa0493570:intron
GTGAAGGTGTCCCATATACT+TGG 0.479301 3_4:+18829267 None:intergenic
GCAAGATGCTCTAAATATGT+TGG 0.487404 3_4:-18827245 Msa0493570:CDS
GGAATTTGAGATGGCTATCA+TGG 0.493604 3_4:+18824066 None:intergenic
ATTAATGAGGTCCTAGCAAA+TGG 0.496953 3_4:-18827741 Msa0493570:intron
AAGTGATGAGCAACAATGTA+GGG 0.499808 3_4:+18827191 None:intergenic
CAAGGGAGCAGTCAATCCTA+TGG 0.499863 3_4:-18827787 Msa0493570:CDS
TGAATGCAAGTAACATACTA+AGG 0.504746 3_4:+18823248 None:intergenic
GCTGCAAAAGTTCCTTCTCA+AGG 0.507675 3_4:-18823325 Msa0493570:CDS
ATCTGCAGCCATGAAAGCTA+CGG 0.508809 3_4:-18830901 Msa0493570:exon
GTCAACGTAGCCCGTAAAGA+TGG 0.512028 3_4:-18824104 Msa0493570:CDS
TATTCATCTTCAAGAGCTTG+TGG 0.514988 3_4:+18827548 None:intergenic
CAATGAAACAATGTTACAAA+GGG 0.519446 3_4:+18827578 None:intergenic
GAAGAATTTAAAATTATCAA+AGG 0.521384 3_4:-18826377 Msa0493570:CDS
CAATCAATGATATTATCCTT+GGG 0.521481 3_4:-18826425 Msa0493570:CDS
TTCATAGTAGTGAGTAATCA+AGG 0.524814 3_4:+18826701 None:intergenic
TGGTGTAGCTATTGGCTCCT+CGG 0.529880 3_4:-18826116 Msa0493570:intron
GATAGCTATGAATGGGATGC+AGG 0.533103 3_4:-18823426 Msa0493570:CDS
CTTGAAGGAGGAATTTGAGA+TGG 0.533284 3_4:+18824057 None:intergenic
GAACTGGCTATACGTCTATC+CGG 0.535930 3_4:-18825482 Msa0493570:CDS
TGCATCCCATTCATAGCTAT+CGG 0.537019 3_4:+18823428 None:intergenic
GATTATGAAAGAAATTGGGT+TGG 0.537525 3_4:-18828864 Msa0493570:CDS
TGCTTGCATATCAGTGAAGT+AGG 0.537710 3_4:+18826277 None:intergenic
TGGGAGAGGACCAAGTATAT+GGG 0.538174 3_4:-18829277 Msa0493570:CDS
GTCATGTTGATATGGGTTGG+TGG 0.541020 3_4:+18826299 None:intergenic
TTTGTGATCGGCAACACTGT+TGG 0.541444 3_4:+18826671 None:intergenic
CAGGTGGAGAAGTGCCTCCA+TGG 0.544070 3_4:+18827267 None:intergenic
TGAGTTATCATCCCTTGAGA+AGG 0.545099 3_4:+18823313 None:intergenic
GTAACATACTAAGGTGACAT+TGG 0.547315 3_4:+18823257 None:intergenic
AAAGTGATGAGCAACAATGT+AGG 0.552733 3_4:+18827190 None:intergenic
TTGATCACAGCAATGAAGAA+TGG 0.553953 3_4:-18826136 Msa0493570:intron
ACTCAAATTTGATCTTCACT+TGG 0.554564 3_4:-18823295 Msa0493570:three_prime_UTR
GAGGGCGTTTACCATTTGCT+AGG 0.554661 3_4:+18827730 None:intergenic
TCTAATTGCAGCTTTGTGAT+CGG 0.555162 3_4:+18826659 None:intergenic
CATACTTTATTGCTTGAAGG+AGG 0.556125 3_4:+18824045 None:intergenic
GAAGTAGGTCATGTTGATAT+GGG 0.560351 3_4:+18826292 None:intergenic
ACCATTTACCCAATAAAAGT+AGG 0.560689 3_4:+18822972 None:intergenic
CTCCAATATTACCACTGCTA+TGG 0.563780 3_4:+18829064 None:intergenic
CTACAATAATGTCATTAATG+AGG 0.565892 3_4:-18827754 Msa0493570:CDS
GAATATTCTTGACCATGAGA+TGG 0.567125 3_4:+18828826 None:intergenic
CTGCAAAAGTTCCTTCTCAA+GGG 0.569967 3_4:-18823324 Msa0493570:CDS
TCTGCAGCCATGAAAGCTAC+GGG 0.571418 3_4:-18830900 Msa0493570:exon
CCAATGAAACAATGTTACAA+AGG 0.572524 3_4:+18827577 None:intergenic
TTGTAGAATTTAACTCCCAT+AGG 0.573321 3_4:+18827771 None:intergenic
ATGTGAAGGGCTACTATGCA+TGG 0.578020 3_4:-18823458 Msa0493570:CDS
TATTTAGAGCATCTTGCAGG+TGG 0.584647 3_4:+18827251 None:intergenic
AAGGAGCATCAAATATAGAT+GGG 0.587590 3_4:-18829296 Msa0493570:CDS
GATATCATATACAGAGGGCA+AGG 0.588586 3_4:-18827805 Msa0493570:intron
CATACAGATTCTCCATCTCA+TGG 0.592212 3_4:-18828838 Msa0493570:CDS
TACACCATTAATGGATACCA+TGG 0.597109 3_4:-18827284 Msa0493570:CDS
AAGGGAGCAGTCAATCCTAT+GGG 0.598556 3_4:-18827786 Msa0493570:CDS
ACCTGGATGTTGTTTAGTGA+AGG 0.598890 3_4:+18829251 None:intergenic
ACCTTCACTAAACAACATCC+AGG 0.605197 3_4:-18829252 Msa0493570:intron
ACAAGATGATGAATTCCCTC+CGG 0.607191 3_4:+18825463 None:intergenic
CAGAGATGGTGCAAATGTGA+AGG 0.608155 3_4:-18823472 Msa0493570:CDS
TAGGTCATGTTGATATGGGT+TGG 0.611086 3_4:+18826296 None:intergenic
AAGGATAATATCATTGATTG+GGG 0.612319 3_4:+18826428 None:intergenic
GCATCAAATATAGATGGGAG+AGG 0.614554 3_4:-18829291 Msa0493570:CDS
AATGAAGCAGCATAGTGACT+TGG 0.621907 3_4:+18830801 None:intergenic
ATATCATATACAGAGGGCAA+GGG 0.643133 3_4:-18827804 Msa0493570:intron
CTGGCTATACGTCTATCCGG+AGG 0.651184 3_4:-18825479 Msa0493570:CDS
TGGCTATACGTCTATCCGGA+GGG 0.653048 3_4:-18825478 Msa0493570:CDS
AATGCTTTGTGCATAATATG+TGG 0.655668 3_4:+18826322 None:intergenic
TGATTGAGCAGAAAAGATTG+GGG 0.664235 3_4:-18829088 Msa0493570:intron
CAGACTCCCAAAATTCACAA+AGG 0.677592 3_4:-18826399 Msa0493570:CDS
AAGATTGGGGACCATAGCAG+TGG 0.682015 3_4:-18829075 Msa0493570:CDS
AGAGATGGTGCAAATGTGAA+GGG 0.682450 3_4:-18823471 Msa0493570:CDS
ACCATTAATGGATACCATGG+AGG 0.695140 3_4:-18827281 Msa0493570:CDS
ATTCCAAAGAGAAAATCAGG+AGG 0.702676 3_4:+18830762 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATT+TGG + chr3_4:18828703-18828722 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr3_4:18828705-18828724 Msa0493570:intron 0.0%
!!! AAATTTATTTTTTGTTAATG+TGG + chr3_4:18824769-18824788 None:intergenic 10.0%
!! AAAAGAAATATTCAAATATT+AGG - chr3_4:18825174-18825193 Msa0493570:intron 10.0%
!! AAAGAAATATTCAAATATTA+GGG - chr3_4:18825175-18825194 Msa0493570:intron 10.0%
!! AAAAAAATCATGTAATATTT+GGG + chr3_4:18825389-18825408 None:intergenic 10.0%
!!! AAATATTACATGATTTTTTT+GGG - chr3_4:18825389-18825408 Msa0493570:intron 10.0%
!!! TATTTTTTCAGTAAAAAAAT+CGG + chr3_4:18825591-18825610 None:intergenic 10.0%
!!! AAAATATTACAAGATTTTTA+CGG - chr3_4:18825605-18825624 Msa0493570:intron 10.0%
!!! ATTTATTTTATTTTTGCAAT+AGG + chr3_4:18826416-18826435 None:intergenic 10.0%
!! CTTAATTTAATGAATAAAAT+AGG - chr3_4:18826500-18826519 Msa0493570:intron 10.0%
!!! AAATAAACATTAAATTTTTC+AGG - chr3_4:18827413-18827432 Msa0493570:intron 10.0%
!! ATCAAAAAAAAATTATACAA+TGG + chr3_4:18827688-18827707 None:intergenic 10.0%
!!! AAATTGAGTTTATAATATTT+TGG + chr3_4:18830035-18830054 None:intergenic 10.0%
!!! CTTTAAAAAAGGATTAAAAT+AGG - chr3_4:18823342-18823361 Msa0493570:CDS 15.0%
!!! TTCAATTATTTTGTAGAATT+AGG + chr3_4:18824057-18824076 None:intergenic 15.0%
!!! TTTTCAAATTCCATATTTTA+GGG + chr3_4:18824419-18824438 None:intergenic 15.0%
!!! TTTTTCAAATTCCATATTTT+AGG + chr3_4:18824420-18824439 None:intergenic 15.0%
!! ATGGAATTTGAAAAAAATAA+TGG - chr3_4:18824425-18824444 Msa0493570:intron 15.0%
!! ACGTGAAAATTAAATATTTA+TGG + chr3_4:18824941-18824960 None:intergenic 15.0%
!! ATAAAGATTATGAAAGAAAT+TGG - chr3_4:18825025-18825044 Msa0493570:intron 15.0%
!! TAAAGATTATGAAAGAAATT+GGG - chr3_4:18825026-18825045 Msa0493570:intron 15.0%
!! AAAAAATCATGTAATATTTG+GGG + chr3_4:18825388-18825407 None:intergenic 15.0%
!! CAAAAAAATCATGTAATATT+TGG + chr3_4:18825390-18825409 None:intergenic 15.0%
!!! CAAATATTACATGATTTTTT+TGG - chr3_4:18825388-18825407 Msa0493570:intron 15.0%
!!! TTTCCATTTTATTTAAGAAA+TGG - chr3_4:18825552-18825571 Msa0493570:intron 15.0%
!!! ATTTTTTCAGTAAAAAAATC+GGG + chr3_4:18825590-18825609 None:intergenic 15.0%
!!! AATTTTTTTTATATATACGG+TGG - chr3_4:18826282-18826301 Msa0493570:CDS 15.0%
!! ATTTAATGAATAAAATAGGA+AGG - chr3_4:18826504-18826523 Msa0493570:intron 15.0%
!!! CAATGTTTATTTTCATAAAA+TGG + chr3_4:18827378-18827397 None:intergenic 15.0%
!!! GAAGAATTTAAAATTATCAA+AGG - chr3_4:18827517-18827536 Msa0493570:intron 15.0%
!!! ATTTGATTTAAAAACTGTTT+AGG - chr3_4:18828076-18828095 Msa0493570:intron 15.0%
!!! TATATTATTTGTTGTGAATT+AGG - chr3_4:18828807-18828826 Msa0493570:intron 15.0%
!! ACATTAATTAATTAACTCTT+AGG - chr3_4:18829552-18829571 Msa0493570:intron 15.0%
!! CATTAATTAATTAACTCTTA+GGG - chr3_4:18829553-18829572 Msa0493570:intron 15.0%
!! ATTAATTAATTAACTCTTAG+GGG - chr3_4:18829554-18829573 Msa0493570:intron 15.0%
!! AATATAGTGAAATAGAATTA+GGG + chr3_4:18829943-18829962 None:intergenic 15.0%
!! TAATATAGTGAAATAGAATT+AGG + chr3_4:18829944-18829963 None:intergenic 15.0%
!!! TTTATGAAGATTTTTTTTTG+AGG + chr3_4:18830010-18830029 None:intergenic 15.0%
!!! TTATAAACTCAATTTTTTGT+TGG - chr3_4:18830040-18830059 Msa0493570:intron 15.0%
!! TGTTTATATAAGAGTTTAAA+GGG + chr3_4:18830338-18830357 None:intergenic 15.0%
!! TTGTTTATATAAGAGTTTAA+AGG + chr3_4:18830339-18830358 None:intergenic 15.0%
!! TAATCAATAAATTCTTTCTA+AGG + chr3_4:18830378-18830397 None:intergenic 15.0%
!!! TAGAAAGAATTTATTGATTA+TGG - chr3_4:18830378-18830397 Msa0493570:intron 15.0%
!! ACAAGCAAAATAAATTTAGT+GGG + chr3_4:18823224-18823243 None:intergenic 20.0%
!! AACAAGCAAAATAAATTTAG+TGG + chr3_4:18823225-18823244 None:intergenic 20.0%
!! AATACTTACAAAATTAGCAT+AGG + chr3_4:18823431-18823450 None:intergenic 20.0%
!! GTTAGAATTATCCATATAAT+CGG - chr3_4:18823451-18823470 Msa0493570:CDS 20.0%
!! TTAGAATTATCCATATAATC+GGG - chr3_4:18823452-18823471 Msa0493570:CDS 20.0%
!! CTTAAGTAGAAAAAAAAATG+AGG - chr3_4:18824372-18824391 Msa0493570:intron 20.0%
!!! TTTCAAATTCCATATTTTAG+GGG + chr3_4:18824418-18824437 None:intergenic 20.0%
!! GAATTTGAAAAAAATAATGG+AGG - chr3_4:18824428-18824447 Msa0493570:intron 20.0%
!! GAAAAATTTGTACAAACAAA+AGG + chr3_4:18824572-18824591 None:intergenic 20.0%
!!! TTTGTTTGTACAAATTTTTC+AGG - chr3_4:18824572-18824591 Msa0493570:intron 20.0%
!! AAAAAATAAATAGAGTAACC+TGG + chr3_4:18824663-18824682 None:intergenic 20.0%
!! GAAATATTCTTATCTTACTT+GGG + chr3_4:18825093-18825112 None:intergenic 20.0%
!! TAATCAACTTAAATGTTACT+TGG + chr3_4:18825115-18825134 None:intergenic 20.0%
!!! TTTCTTTTTTGTGTTAACAT+CGG + chr3_4:18825162-18825181 None:intergenic 20.0%
!! AAGTCAAAAGTAATTAATCA+TGG - chr3_4:18825263-18825282 Msa0493570:intron 20.0%
!!! ACTTCCATTTATTTTCTAAA+TGG - chr3_4:18825350-18825369 Msa0493570:intron 20.0%
!! TCTCCATTTCTTAAATAAAA+TGG + chr3_4:18825558-18825577 None:intergenic 20.0%
!!! ATTTTATTTAAGAAATGGAG+AGG - chr3_4:18825557-18825576 Msa0493570:intron 20.0%
!! AATGCATAATAATATACGTA+AGG - chr3_4:18825725-18825744 Msa0493570:intron 20.0%
!!! TAGTGTAATTTTTTTTCTAG+AGG - chr3_4:18825841-18825860 Msa0493570:intron 20.0%
!! TTCAAATAGTGATTATATGA+GGG + chr3_4:18826185-18826204 None:intergenic 20.0%
!! ATTCAAATAGTGATTATATG+AGG + chr3_4:18826186-18826205 None:intergenic 20.0%
!! CAATTGATGAAATTTATGAT+TGG - chr3_4:18827134-18827153 Msa0493570:intron 20.0%
!! ATGGTATGTATAATAATCTA+TGG - chr3_4:18827278-18827297 Msa0493570:CDS 20.0%
!!! GATATCTTTTAAATCTCTAT+TGG - chr3_4:18828004-18828023 Msa0493570:intron 20.0%
!! AAAAATACCATATAATGCTT+TGG - chr3_4:18828338-18828357 Msa0493570:intron 20.0%
!! AAAATACCATATAATGCTTT+GGG - chr3_4:18828339-18828358 Msa0493570:intron 20.0%
!! CTAAAAAATTTGTGAAGTTT+AGG + chr3_4:18829508-18829527 None:intergenic 20.0%
!! TGAAAAAGAAATTAGAACTA+TGG + chr3_4:18829595-18829614 None:intergenic 20.0%
!!! TTGTTTTGTGAATATATTTC+AGG - chr3_4:18829736-18829755 Msa0493570:intron 20.0%
!! GTTTATATAAGAGTTTAAAG+GGG + chr3_4:18830337-18830356 None:intergenic 20.0%
!! TTCATATGTATTGAGATAAT+TGG - chr3_4:18830665-18830684 Msa0493570:intron 20.0%
!! TACCAATTAAATAAAGCTTA+TGG - chr3_4:18830691-18830710 Msa0493570:intron 20.0%
!! ACCAATTAAATAAAGCTTAT+GGG - chr3_4:18830692-18830711 Msa0493570:intron 20.0%
!! CGTCATCATTTCTTTAAAAA+AGG - chr3_4:18823331-18823350 Msa0493570:CDS 25.0%
! TATAATCATGATTGTGGTTA+GGG + chr3_4:18823521-18823540 None:intergenic 25.0%
! ATATAATCATGATTGTGGTT+AGG + chr3_4:18823522-18823541 None:intergenic 25.0%
! ATGTCTAAACAATATCAACA+TGG + chr3_4:18823606-18823625 None:intergenic 25.0%
! GCATAAAGAATTAAGTATCA+CGG + chr3_4:18823964-18823983 None:intergenic 25.0%
! TAATCTAAACCCCTAAAATA+TGG - chr3_4:18824406-18824425 Msa0493570:intron 25.0%
!! AAAATAATGGAGGATAATGT+TGG - chr3_4:18824438-18824457 Msa0493570:intron 25.0%
! AGACTTCAGAAAAAAATGAT+AGG - chr3_4:18824478-18824497 Msa0493570:intron 25.0%
!! TGATTTTTATCATCGATACA+AGG - chr3_4:18824854-18824873 Msa0493570:intron 25.0%
! GGAAATATTCTTATCTTACT+TGG + chr3_4:18825094-18825113 None:intergenic 25.0%
! TCAAAAGTAATTAATCATGG+TGG - chr3_4:18825266-18825285 Msa0493570:intron 25.0%
! CAAAAGTAATTAATCATGGT+GGG - chr3_4:18825267-18825286 Msa0493570:intron 25.0%
!! ATAAATGGAAGTATGCAATT+TGG + chr3_4:18825342-18825361 None:intergenic 25.0%
! CTCTCCATTTAGAAAATAAA+TGG + chr3_4:18825357-18825376 None:intergenic 25.0%
!!! CATTTATTTTCTAAATGGAG+AGG - chr3_4:18825355-18825374 Msa0493570:intron 25.0%
! ACATTTATACACCAAAACTT+TGG + chr3_4:18825458-18825477 None:intergenic 25.0%
! ATAATAATATACGTAAGGTC+CGG - chr3_4:18825730-18825749 Msa0493570:intron 25.0%
! CTACAATAATGTCATTAATG+AGG - chr3_4:18826140-18826159 Msa0493570:intron 25.0%
! CAATGAAACAATGTTACAAA+GGG + chr3_4:18826319-18826338 None:intergenic 25.0%
! CTTTGTAACATTGTTTCATT+GGG - chr3_4:18826318-18826337 Msa0493570:CDS 25.0%
!!! ATATTTGGCCTTATACAATT+TGG + chr3_4:18826752-18826771 None:intergenic 25.0%
! TGATCATATTACCTGATATT+TGG + chr3_4:18826767-18826786 None:intergenic 25.0%
!!! ATCGATTTTAAAAGTGTAAG+TGG + chr3_4:18826972-18826991 None:intergenic 25.0%
! GATCAAACCAAATTAAAAAG+TGG - chr3_4:18826989-18827008 Msa0493570:intron 25.0%
! AAATTTATGATTGGTACCAT+AGG - chr3_4:18827143-18827162 Msa0493570:CDS 25.0%
!! AAGGATAATATCATTGATTG+GGG + chr3_4:18827469-18827488 None:intergenic 25.0%
!! CAAGGATAATATCATTGATT+GGG + chr3_4:18827470-18827489 None:intergenic 25.0%
! CAATCAATGATATTATCCTT+GGG - chr3_4:18827469-18827488 Msa0493570:intron 25.0%
!! ATTCTTCCTTTGTGAATTTT+GGG + chr3_4:18827504-18827523 None:intergenic 25.0%
!! AATTCTTCCTTTGTGAATTT+TGG + chr3_4:18827505-18827524 None:intergenic 25.0%
!!! TATACAATGGCTTATTTTAC+TGG + chr3_4:18827675-18827694 None:intergenic 25.0%
! AATATTGAACTAACAACACA+AGG - chr3_4:18827721-18827740 Msa0493570:intron 25.0%
! AAAAATAAAAGATCATACCG+AGG + chr3_4:18827798-18827817 None:intergenic 25.0%
!!! GGTATGATCTTTTATTTTTG+TGG - chr3_4:18827799-18827818 Msa0493570:intron 25.0%
! GCTATATGACATGAAAAATT+TGG + chr3_4:18827886-18827905 None:intergenic 25.0%
! TATAGTTATTGTAGCTTCAT+AGG + chr3_4:18827956-18827975 None:intergenic 25.0%
!!! TTGTTTTATACGATGTTTGA+TGG + chr3_4:18828220-18828239 None:intergenic 25.0%
!! TTTTCTCTTTACATGATACA+AGG + chr3_4:18828321-18828340 None:intergenic 25.0%
! TTATTGCTTCTTCCTAATAT+GGG + chr3_4:18828561-18828580 None:intergenic 25.0%
! ACTCAATCAATTGATTGTAT+AGG + chr3_4:18828658-18828677 None:intergenic 25.0%
! ATCAAACCTAAATCTAATCT+AGG - chr3_4:18828917-18828936 Msa0493570:intron 25.0%
! TTGATTCCTAGATTAGATTT+AGG + chr3_4:18828926-18828945 None:intergenic 25.0%
!! AAATTAAGTTTGTTCTTGGA+GGG + chr3_4:18829130-18829149 None:intergenic 25.0%
!! GTAGAAATTAAGTTTGTTCT+TGG + chr3_4:18829134-18829153 None:intergenic 25.0%
! TGAATATTTAGTTAGCTAGA+TGG + chr3_4:18829668-18829687 None:intergenic 25.0%
! GAATTGATCTCATAATTAAC+AGG + chr3_4:18830204-18830223 None:intergenic 25.0%
! GAGTAGGAAGTAAAATATTA+GGG - chr3_4:18830226-18830245 Msa0493570:intron 25.0%
ATGCATTGTTGCTAATAATG+TGG + chr3_4:18823187-18823206 None:intergenic 30.0%
ATTTAGTGGGAAGTCAATAA+TGG + chr3_4:18823211-18823230 None:intergenic 30.0%
TTATACATAGCTCGTCATAA+AGG - chr3_4:18823244-18823263 Msa0493570:three_prime_UTR 30.0%
AAAACGAACATTGAAAACAC+CGG + chr3_4:18823281-18823300 None:intergenic 30.0%
CTGTGATATAATCATGATTG+TGG + chr3_4:18823527-18823546 None:intergenic 30.0%
TTTGTATTAGCCACATTTCA+TGG + chr3_4:18823572-18823591 None:intergenic 30.0%
AATACTTTGATGTTGTTGAC+AGG - chr3_4:18823635-18823654 Msa0493570:intron 30.0%
TTGATGCCTCAAAAAATATG+AGG - chr3_4:18824184-18824203 Msa0493570:intron 30.0%
ATTTGTCACTATGTGTATCT+TGG - chr3_4:18824338-18824357 Msa0493570:intron 30.0%
!!! AGCATTTTTTCTTTGTATCC+TGG - chr3_4:18824512-18824531 Msa0493570:intron 30.0%
!!! ATTTTTTCTTTGTATCCTGG+TGG - chr3_4:18824515-18824534 Msa0493570:intron 30.0%
!!! GTACAAATTTTTCAGGTAGA+AGG - chr3_4:18824579-18824598 Msa0493570:intron 30.0%
!! AAGGAGCATCAAATATAGAT+GGG - chr3_4:18824598-18824617 Msa0493570:intron 30.0%
TTATCGAATATTTGAGCTCA+TGG - chr3_4:18824742-18824761 Msa0493570:intron 30.0%
TTGATTGAGCAGAAAAGATT+GGG - chr3_4:18824805-18824824 Msa0493570:intron 30.0%
! TTTTATCATCGATACAAGGT+AGG - chr3_4:18824858-18824877 Msa0493570:intron 30.0%
!! GTTTTTGTCTTAGTCTTTTG+AGG - chr3_4:18824901-18824920 Msa0493570:intron 30.0%
GATTATGAAAGAAATTGGGT+TGG - chr3_4:18825030-18825049 Msa0493570:intron 30.0%
GAAATGGAGAGGATAATAAA+TGG + chr3_4:18825213-18825232 None:intergenic 30.0%
ATCTTTCCAAATGGTAGAAA+TGG + chr3_4:18825229-18825248 None:intergenic 30.0%
TGTGTCTTTATCTTTCCAAA+TGG + chr3_4:18825238-18825257 None:intergenic 30.0%
AGACACATAAAATAGGTAGT+GGG + chr3_4:18825311-18825330 None:intergenic 30.0%
TAGACACATAAAATAGGTAG+TGG + chr3_4:18825312-18825331 None:intergenic 30.0%
GAGAGATAGACACATAAAAT+AGG + chr3_4:18825318-18825337 None:intergenic 30.0%
!! AACTTTGGTAATGGAACAAA+TGG + chr3_4:18825443-18825462 None:intergenic 30.0%
! TTGTTCCATTACCAAAGTTT+TGG - chr3_4:18825444-18825463 Msa0493570:CDS 30.0%
ATACACCAAAACTTTGGTAA+TGG + chr3_4:18825452-18825471 None:intergenic 30.0%
! ATTCTTTTACCACTATGTGA+TGG - chr3_4:18825649-18825668 Msa0493570:intron 30.0%
TAATAATATACGTAAGGTCC+GGG - chr3_4:18825731-18825750 Msa0493570:intron 30.0%
TTATTGGGTGAAATCAATGT+GGG + chr3_4:18825912-18825931 None:intergenic 30.0%
TTTATTGGGTGAAATCAATG+TGG + chr3_4:18825911-18825930 None:intergenic 30.0%
TGCAATGATATCATATACAG+AGG - chr3_4:18826083-18826102 Msa0493570:intron 30.0%
GCAATGATATCATATACAGA+GGG - chr3_4:18826084-18826103 Msa0493570:intron 30.0%
TTGTAGAATTTAACTCCCAT+AGG + chr3_4:18826126-18826145 None:intergenic 30.0%
!!! TTTTTTATATATACGGTGGC+AGG - chr3_4:18826286-18826305 Msa0493570:CDS 30.0%
CCAATGAAACAATGTTACAA+AGG + chr3_4:18826320-18826339 None:intergenic 30.0%
CCTTTGTAACATTGTTTCAT+TGG - chr3_4:18826317-18826336 Msa0493570:CDS 30.0%
AGCTCTTGAAGATGAATATA+AGG - chr3_4:18826351-18826370 Msa0493570:CDS 30.0%
GCTCTTGAAGATGAATATAA+GGG - chr3_4:18826352-18826371 Msa0493570:CDS 30.0%
ACTTAAGCTTACACTACTTT+AGG + chr3_4:18826388-18826407 None:intergenic 30.0%
! GATTTTTGCTTCAAGACATT+TGG - chr3_4:18826544-18826563 Msa0493570:intron 30.0%
ATTGTATAAGGCCAAATATC+AGG - chr3_4:18826753-18826772 Msa0493570:intron 30.0%
!!! GGTTCAACCACTTTTTAATT+TGG + chr3_4:18826999-18827018 None:intergenic 30.0%
AGTAACTGTCGATCTTAATT+CGG + chr3_4:18827020-18827039 None:intergenic 30.0%
GCTCATCAAAAAGGAAAAAT+TGG - chr3_4:18827165-18827184 Msa0493570:CDS 30.0%
TTCATAGTAGTGAGTAATCA+AGG + chr3_4:18827196-18827215 None:intergenic 30.0%
!! AGAGCACTTGACTTTTTATT+TGG - chr3_4:18827255-18827274 Msa0493570:CDS 30.0%
!! CACTTGACTTTTTATTTGGA+TGG - chr3_4:18827259-18827278 Msa0493570:CDS 30.0%
TTTGCTCATCCAATTACATA+TGG - chr3_4:18827436-18827455 Msa0493570:intron 30.0%
CCAAGGATAATATCATTGAT+TGG + chr3_4:18827471-18827490 None:intergenic 30.0%
CCAATCAATGATATTATCCT+TGG - chr3_4:18827468-18827487 Msa0493570:intron 30.0%
! AAAGGTTCCTATGATTTTCT+TGG - chr3_4:18827535-18827554 Msa0493570:CDS 30.0%
ATTCACACCAAGAAAATCAT+AGG + chr3_4:18827545-18827564 None:intergenic 30.0%
AATGCTTTGTGCATAATATG+TGG + chr3_4:18827575-18827594 None:intergenic 30.0%
ACCTCATTCGTAAGTATTTA+TGG - chr3_4:18827641-18827660 Msa0493570:intron 30.0%
TCCATAAATACTTACGAATG+AGG + chr3_4:18827645-18827664 None:intergenic 30.0%
!!! TCTGTATGTGTTGTTTTTCT+TGG - chr3_4:18827827-18827846 Msa0493570:intron 30.0%
!!! TTTCTTGGCTTCTTTGTTTT+TGG - chr3_4:18827842-18827861 Msa0493570:intron 30.0%
! GTGATTTTGTTCGAAACAAA+TGG + chr3_4:18827921-18827940 None:intergenic 30.0%
TTGCTTCACTAAGAATCAAA+AGG + chr3_4:18828365-18828384 None:intergenic 30.0%
CTTAGTGAAGCAAAACTTTA+TGG - chr3_4:18828372-18828391 Msa0493570:intron 30.0%
CTTATTGCTTCTTCCTAATA+TGG + chr3_4:18828562-18828581 None:intergenic 30.0%
TTGTGTAAGCATGTCAATTA+GGG + chr3_4:18828772-18828791 None:intergenic 30.0%
! CTCTATTTATCTTTTGCTTG+TGG + chr3_4:18828964-18828983 None:intergenic 30.0%
TCTAACAATGACCTACTATT+GGG - chr3_4:18829024-18829043 Msa0493570:intron 30.0%
! GAAATTAAGTTTGTTCTTGG+AGG + chr3_4:18829131-18829150 None:intergenic 30.0%
ATGAGAAGAGATTGGAAAAT+GGG + chr3_4:18829156-18829175 None:intergenic 30.0%
TATTGTTCATGAGAAGAGAT+TGG + chr3_4:18829164-18829183 None:intergenic 30.0%
! CAATAATTTTCACTCATCCA+AGG - chr3_4:18829188-18829207 Msa0493570:intron 30.0%
AATCAAAGGACGTAACTTTA+GGG + chr3_4:18829276-18829295 None:intergenic 30.0%
AAATCAAAGGACGTAACTTT+AGG + chr3_4:18829277-18829296 None:intergenic 30.0%
AGAGAAACTTGGAAAATCAA+AGG + chr3_4:18829290-18829309 None:intergenic 30.0%
ACACGATTGAGCATTATTTA+AGG + chr3_4:18829329-18829348 None:intergenic 30.0%
TAATTAACTCTTAGGGGAAA+AGG - chr3_4:18829560-18829579 Msa0493570:intron 30.0%
!! GTTAGCTAGATGGATTTTTA+TGG + chr3_4:18829658-18829677 None:intergenic 30.0%
TGTGAATATATTTCAGGCAT+TGG - chr3_4:18829742-18829761 Msa0493570:intron 30.0%
TGATCCTAATACCATCTTTA+CGG + chr3_4:18829804-18829823 None:intergenic 30.0%
GTTCATACTTTATTGCTTGA+AGG + chr3_4:18829855-18829874 None:intergenic 30.0%
TAGGGAAACTTGTAAATCTA+GGG + chr3_4:18829925-18829944 None:intergenic 30.0%
TTAGGGAAACTTGTAAATCT+AGG + chr3_4:18829926-18829945 None:intergenic 30.0%
TTCAAAGAGTCTAATCTACA+AGG + chr3_4:18830181-18830200 None:intergenic 30.0%
CGAGTAGGAAGTAAAATATT+AGG - chr3_4:18830225-18830244 Msa0493570:intron 30.0%
ATCGTTAAACTACCTTTGAA+AGG - chr3_4:18830260-18830279 Msa0493570:intron 30.0%
! ATTTTCCGATAGCTATGAAT+GGG - chr3_4:18830461-18830480 Msa0493570:intron 30.0%
ACTCAAATTTGATCTTCACT+TGG - chr3_4:18830599-18830618 Msa0493570:intron 30.0%
TGAATGCAAGTAACATACTA+AGG + chr3_4:18830649-18830668 None:intergenic 30.0%
!! GCCCATAAGCTTTATTTAAT+TGG + chr3_4:18830696-18830715 None:intergenic 30.0%
!!! TCTCTAACAACTCTCTTTTT+TGG - chr3_4:18830775-18830794 Msa0493570:CDS 30.0%
!!! CTCTAACAACTCTCTTTTTT+GGG - chr3_4:18830776-18830795 Msa0493570:CDS 30.0%
CAGAGAAAAAAGATAGAGGT+GGG + chr3_4:18823025-18823044 None:intergenic 35.0%
TAGCCAGAGAAAAAAGATAG+AGG + chr3_4:18823029-18823048 None:intergenic 35.0%
! ACTATGCTGCTTCATTCAAT+AGG - chr3_4:18823100-18823119 Msa0493570:three_prime_UTR 35.0%
GAGAAAATCAGGAGGAAAAA+GGG + chr3_4:18823127-18823146 None:intergenic 35.0%
AGAGAAAATCAGGAGGAAAA+AGG + chr3_4:18823128-18823147 None:intergenic 35.0%
! TTTCCTCCTGATTTTCTCTT+TGG - chr3_4:18823129-18823148 Msa0493570:three_prime_UTR 35.0%
ATTCCAAAGAGAAAATCAGG+AGG + chr3_4:18823135-18823154 None:intergenic 35.0%
CCAATTCCAAAGAGAAAATC+AGG + chr3_4:18823138-18823157 None:intergenic 35.0%
!!! CCTGATTTTCTCTTTGGAAT+TGG - chr3_4:18823135-18823154 Msa0493570:three_prime_UTR 35.0%
CATTGTTGCTAATAATGTGG+TGG + chr3_4:18823184-18823203 None:intergenic 35.0%
AAGAATCGATCCCGATTATA+TGG + chr3_4:18823465-18823484 None:intergenic 35.0%
TGAAACGTTAAAGAGTAGAG+TGG + chr3_4:18823498-18823517 None:intergenic 35.0%
GTTCTTGATATCACAGACAA+TGG - chr3_4:18823546-18823565 Msa0493570:intron 35.0%
GGCTAATACAAACTCAATTG+TGG - chr3_4:18823580-18823599 Msa0493570:intron 35.0%
CATAGAACACTCAAAATCTC+AGG + chr3_4:18823667-18823686 None:intergenic 35.0%
TAAATGCACGTGAAACGTTA+GGG + chr3_4:18824120-18824139 None:intergenic 35.0%
!!! TTTTTGAGGCATCAAGTCAT+TGG + chr3_4:18824179-18824198 None:intergenic 35.0%
ATATATGCAGCAACCAATGA+CGG + chr3_4:18824245-18824264 None:intergenic 35.0%
! ATGGAGGATAATGTTGGTTA+AGG - chr3_4:18824444-18824463 Msa0493570:intron 35.0%
! TGGAGGATAATGTTGGTTAA+GGG - chr3_4:18824445-18824464 Msa0493570:intron 35.0%
!! GAAGGAGCATCAAATATAGA+TGG - chr3_4:18824597-18824616 Msa0493570:intron 35.0%
! TCTTTTCTGCTCAATCAAGA+GGG + chr3_4:18824803-18824822 None:intergenic 35.0%
! ATCTTTTCTGCTCAATCAAG+AGG + chr3_4:18824804-18824823 None:intergenic 35.0%
CTTGATTGAGCAGAAAAGAT+TGG - chr3_4:18824804-18824823 Msa0493570:intron 35.0%
TGATTGAGCAGAAAAGATTG+GGG - chr3_4:18824806-18824825 Msa0493570:intron 35.0%
GAATATTCTTGACCATGAGA+TGG + chr3_4:18825071-18825090 None:intergenic 35.0%
TAATAAAGCCACATTCTCCT+AGG - chr3_4:18825133-18825152 Msa0493570:intron 35.0%
GGAGAGAACTTAAAATTGAG+AGG + chr3_4:18825422-18825441 None:intergenic 35.0%
TCTCTTAATCCATCACATAG+TGG + chr3_4:18825661-18825680 None:intergenic 35.0%
!! CTATGTGATGGATTAAGAGA+CGG - chr3_4:18825661-18825680 Msa0493570:intron 35.0%
!! TATGTGATGGATTAAGAGAC+GGG - chr3_4:18825662-18825681 Msa0493570:intron 35.0%
AATAATATACGTAAGGTCCG+GGG - chr3_4:18825732-18825751 Msa0493570:intron 35.0%
!!! TGAAACCCGTCTCTTTTTTT+TGG + chr3_4:18825773-18825792 None:intergenic 35.0%
! TCTAGCACTCACTCTTTTAT+TGG - chr3_4:18825896-18825915 Msa0493570:intron 35.0%
! CTAGCACTCACTCTTTTATT+GGG - chr3_4:18825897-18825916 Msa0493570:intron 35.0%
GAAATTGAACCCACATAAAG+TGG + chr3_4:18825943-18825962 None:intergenic 35.0%
! CTAGCACTCACTCTTTTATT+GGG + chr3_4:18825897-18825916 None:intergenic 35.0%
! TCTAGCACTCACTCTTTTAT+TGG + chr3_4:18825896-18825915 None:intergenic 35.0%
ATATCATATACAGAGGGCAA+GGG - chr3_4:18826090-18826109 Msa0493570:intron 35.0%
ATTAATGAGGTCCTAGCAAA+TGG - chr3_4:18826153-18826172 Msa0493570:intron 35.0%
TATTCATCTTCAAGAGCTTG+TGG + chr3_4:18826349-18826368 None:intergenic 35.0%
CTTGAAGCAAAAATCAGCAT+AGG + chr3_4:18826539-18826558 None:intergenic 35.0%
CTTCAAGACATTTGGAGATA+GGG - chr3_4:18826552-18826571 Msa0493570:intron 35.0%
CCATTAATGGTGTATGAAAC+AGG + chr3_4:18826604-18826623 None:intergenic 35.0%
CCTGTTTCATACACCATTAA+TGG - chr3_4:18826601-18826620 Msa0493570:intron 35.0%
! TACACCATTAATGGATACCA+TGG - chr3_4:18826610-18826629 Msa0493570:intron 35.0%
! ACATATTTAGAGCATCTTGC+AGG + chr3_4:18826649-18826668 None:intergenic 35.0%
! GCAAGATGCTCTAAATATGT+TGG - chr3_4:18826649-18826668 Msa0493570:CDS 35.0%
TATGTTGGAAATTGCTCTAC+TGG - chr3_4:18826664-18826683 Msa0493570:CDS 35.0%
AAGTGATGAGCAACAATGTA+GGG + chr3_4:18826706-18826725 None:intergenic 35.0%
AAAGTGATGAGCAACAATGT+AGG + chr3_4:18826707-18826726 None:intergenic 35.0%
! TGCCATTCGACATTTTTCAT+CGG - chr3_4:18826928-18826947 Msa0493570:intron 35.0%
TTGCTCATTCACTACATCAA+CGG + chr3_4:18827044-18827063 None:intergenic 35.0%
! TTTCCTTTTTGATGAGCCTA+TGG + chr3_4:18827162-18827181 None:intergenic 35.0%
! TCTAATTGCAGCTTTGTGAT+CGG + chr3_4:18827238-18827257 None:intergenic 35.0%
GGATAGTGACCATATGTAAT+TGG + chr3_4:18827448-18827467 None:intergenic 35.0%
GAAGTAGGTCATGTTGATAT+GGG + chr3_4:18827605-18827624 None:intergenic 35.0%
TGAAGTAGGTCATGTTGATA+TGG + chr3_4:18827606-18827625 None:intergenic 35.0%
TTGATCACAGCAATGAAGAA+TGG - chr3_4:18827758-18827777 Msa0493570:CDS 35.0%
ATGAAGAATGGTGTAGCTAT+TGG - chr3_4:18827770-18827789 Msa0493570:CDS 35.0%
!!! TTGGCTTCTTTGTTTTTGGT+TGG - chr3_4:18827846-18827865 Msa0493570:intron 35.0%
!! AGGAGCGTTGATATGTTAAA+AGG + chr3_4:18828301-18828320 None:intergenic 35.0%
! AAAAGGCCCAAAGCATTATA+TGG + chr3_4:18828348-18828367 None:intergenic 35.0%
! TTTTCAGTAATGTACACTGG+TGG + chr3_4:18828485-18828504 None:intergenic 35.0%
! CCATTTTCAGTAATGTACAC+TGG + chr3_4:18828488-18828507 None:intergenic 35.0%
CCAGTGTACATTACTGAAAA+TGG - chr3_4:18828485-18828504 Msa0493570:intron 35.0%
AGTATAGAGAGACCCATATT+AGG - chr3_4:18828546-18828565 Msa0493570:intron 35.0%
AGAAGCAATAAGTCTCCATA+AGG - chr3_4:18828570-18828589 Msa0493570:intron 35.0%
TCTCCATAAGGAGGATAATT+TGG - chr3_4:18828582-18828601 Msa0493570:intron 35.0%
TCACCAAATTATCCTCCTTA+TGG + chr3_4:18828588-18828607 None:intergenic 35.0%
GTTGTGTAAGCATGTCAATT+AGG + chr3_4:18828773-18828792 None:intergenic 35.0%
! GCATGAGGTTACTTTGATAT+TGG + chr3_4:18828885-18828904 None:intergenic 35.0%
! GATATTGTTGTTGTTGCATG+AGG + chr3_4:18828900-18828919 None:intergenic 35.0%
CAAGAAATGTTTACCCAGTT+CGG - chr3_4:18829001-18829020 Msa0493570:intron 35.0%
GTCTAACAATGACCTACTAT+TGG - chr3_4:18829023-18829042 Msa0493570:intron 35.0%
CTAACAATGACCTACTATTG+GGG - chr3_4:18829025-18829044 Msa0493570:intron 35.0%
TAACAATGACCTACTATTGG+GGG - chr3_4:18829026-18829045 Msa0493570:intron 35.0%
CATGAGAAGAGATTGGAAAA+TGG + chr3_4:18829157-18829176 None:intergenic 35.0%
! TTTGAGAGGTTTTCTTGAGT+TGG + chr3_4:18829230-18829249 None:intergenic 35.0%
!!! CGTAGCACAATTTTGAGATA+AGG + chr3_4:18829386-18829405 None:intergenic 35.0%
TAGCTATTGGTAGAAAATCG+TGG + chr3_4:18829424-18829443 None:intergenic 35.0%
!!! ACGTTTTTTAGGAAGAATGC+AGG + chr3_4:18829449-18829468 None:intergenic 35.0%
CTAGCTAGTGTTAAGAACTA+TGG + chr3_4:18829622-18829641 None:intergenic 35.0%
ACACTAGCTAGCTAAATGTT+TGG - chr3_4:18829631-18829650 Msa0493570:intron 35.0%
GATCCTAATACCATCTTTAC+GGG + chr3_4:18829803-18829822 None:intergenic 35.0%
CATACTTTATTGCTTGAAGG+AGG + chr3_4:18829852-18829871 None:intergenic 35.0%
! GAGATACTTGGTTTGAATCA+CGG - chr3_4:18830130-18830149 Msa0493570:intron 35.0%
TATGAGATCAATTCTCGAGT+AGG - chr3_4:18830210-18830229 Msa0493570:intron 35.0%
! TTTAGAGTCGTTCCTTTCAA+AGG + chr3_4:18830275-18830294 None:intergenic 35.0%
! TCGAACTCGCATATTTTGTT+AGG - chr3_4:18830297-18830316 Msa0493570:intron 35.0%
! CGAACTCGCATATTTTGTTA+GGG - chr3_4:18830298-18830317 Msa0493570:intron 35.0%
! GAACTCGCATATTTTGTTAG+GGG - chr3_4:18830299-18830318 Msa0493570:intron 35.0%
! CATTTTCCGATAGCTATGAA+TGG - chr3_4:18830460-18830479 Msa0493570:intron 35.0%
GTAACATACTAAGGTGACAT+TGG + chr3_4:18830640-18830659 None:intergenic 35.0%
!!! AACAACTCTCTTTTTTGGGA+AGG - chr3_4:18830780-18830799 Msa0493570:CDS 35.0%
GAAAAAAGATAGAGGTGGGA+AGG + chr3_4:18823021-18823040 None:intergenic 40.0%
CCAGAGAAAAAAGATAGAGG+TGG + chr3_4:18823026-18823045 None:intergenic 40.0%
!!! CCACCTCTATCTTTTTTCTC+TGG - chr3_4:18823023-18823042 Msa0493570:three_prime_UTR 40.0%
!!! ACACTTTTTGCTGTTGTCAC+CGG - chr3_4:18823048-18823067 Msa0493570:three_prime_UTR 40.0%
AATGAAGCAGCATAGTGACT+TGG + chr3_4:18823096-18823115 None:intergenic 40.0%
! AATTGGTTCTTCTGCTTACC+AGG - chr3_4:18823152-18823171 Msa0493570:three_prime_UTR 40.0%
ATAATGTGGTGGTATGAACC+TGG + chr3_4:18823173-18823192 None:intergenic 40.0%
CATAAAGGCCACTGTATTTC+CGG - chr3_4:18823259-18823278 Msa0493570:three_prime_UTR 40.0%
TGAAAACACCGGAAATACAG+TGG + chr3_4:18823270-18823289 None:intergenic 40.0%
GTAAATGCACGTGAAACGTT+AGG + chr3_4:18824121-18824140 None:intergenic 40.0%
!!! ACACGGCCTCATATTTTTTG+AGG + chr3_4:18824193-18824212 None:intergenic 40.0%
TTGCTTACATTATCTCCACC+AGG + chr3_4:18824533-18824552 None:intergenic 40.0%
GCATCAAATATAGATGGGAG+AGG - chr3_4:18824603-18824622 Msa0493570:intron 40.0%
ACCTTCACTAAACAACATCC+AGG - chr3_4:18824642-18824661 Msa0493570:intron 40.0%
! ACCTGGATGTTGTTTAGTGA+AGG + chr3_4:18824646-18824665 None:intergenic 40.0%
GACCATAGCAGTGGTAATAT+TGG - chr3_4:18824828-18824847 Msa0493570:intron 40.0%
CTCCAATATTACCACTGCTA+TGG + chr3_4:18824833-18824852 None:intergenic 40.0%
CATACAGATTCTCCATCTCA+TGG - chr3_4:18825056-18825075 Msa0493570:intron 40.0%
TGTGTTAACATCGGATTCCT+AGG + chr3_4:18825153-18825172 None:intergenic 40.0%
GGAGAGGATAATAAATGGAG+AGG + chr3_4:18825208-18825227 None:intergenic 40.0%
TCCTCTCCATTTCTACCATT+TGG - chr3_4:18825220-18825239 Msa0493570:intron 40.0%
TCCAAATGGTAGAAATGGAG+AGG + chr3_4:18825224-18825243 None:intergenic 40.0%
!!! CGTCTCTTTTTTTTGGTGGT+CGG + chr3_4:18825766-18825785 None:intergenic 40.0%
CGACCACCAAAAAAAAGAGA+CGG - chr3_4:18825764-18825783 Msa0493570:intron 40.0%
GACCACCAAAAAAAAGAGAC+GGG - chr3_4:18825765-18825784 Msa0493570:intron 40.0%
!!! AACCCGTCTCTTTTTTTTGG+TGG + chr3_4:18825770-18825789 None:intergenic 40.0%
TATGACCCACCACTTTATGT+GGG - chr3_4:18825931-18825950 Msa0493570:intron 40.0%
TTGAACCCACATAAAGTGGT+GGG + chr3_4:18825939-18825958 None:intergenic 40.0%
ATTGAACCCACATAAAGTGG+TGG + chr3_4:18825940-18825959 None:intergenic 40.0%
GGGTTCAATTTCCAAAGTGT+AGG - chr3_4:18825951-18825970 Msa0493570:intron 40.0%
GATATCATATACAGAGGGCA+AGG - chr3_4:18826089-18826108 Msa0493570:intron 40.0%
GCTTCAAGACATTTGGAGAT+AGG - chr3_4:18826551-18826570 Msa0493570:intron 40.0%
TTGGAGATAGGGTTAAGCAT+TGG - chr3_4:18826563-18826582 Msa0493570:intron 40.0%
TGGAGATAGGGTTAAGCATT+GGG - chr3_4:18826564-18826583 Msa0493570:intron 40.0%
! ACCATTAATGGATACCATGG+AGG - chr3_4:18826613-18826632 Msa0493570:intron 40.0%
! TATTTAGAGCATCTTGCAGG+TGG + chr3_4:18826646-18826665 None:intergenic 40.0%
TGCTGCAGCCAAATTGTATA+AGG - chr3_4:18826741-18826760 Msa0493570:intron 40.0%
TGCCGATGAAAAATGTCGAA+TGG + chr3_4:18826933-18826952 None:intergenic 40.0%
GTACCATAGGCTCATCAAAA+AGG - chr3_4:18827156-18827175 Msa0493570:CDS 40.0%
CAGACTCCCAAAATTCACAA+AGG - chr3_4:18827495-18827514 Msa0493570:intron 40.0%
TAGGTCATGTTGATATGGGT+TGG + chr3_4:18827601-18827620 None:intergenic 40.0%
TGCTTGCATATCAGTGAAGT+AGG + chr3_4:18827620-18827639 None:intergenic 40.0%
! AACTTTATGGCTTGTGCAGA+CGG - chr3_4:18828385-18828404 Msa0493570:intron 40.0%
ACAAGATGATGAATTCCCTC+CGG + chr3_4:18828434-18828453 None:intergenic 40.0%
AGCAATAAGTCTCCATAAGG+AGG - chr3_4:18828573-18828592 Msa0493570:intron 40.0%
TTCTTGTAGAGTTGCCCATT+AGG - chr3_4:18828621-18828640 Msa0493570:intron 40.0%
AGGATTCTCAGCTTCCTAAT+GGG + chr3_4:18828638-18828657 None:intergenic 40.0%
TAGGATTCTCAGCTTCCTAA+TGG + chr3_4:18828639-18828658 None:intergenic 40.0%
CACCAACAAATTTAGACGTG+TGG - chr3_4:18828841-18828860 Msa0493570:CDS 40.0%
CTCCACACGTCTAAATTTGT+TGG + chr3_4:18828846-18828865 None:intergenic 40.0%
GACAACACTTGTAAACACCT+TGG + chr3_4:18829208-18829227 None:intergenic 40.0%
TGCTTCAAGAGAGAGAAACT+TGG + chr3_4:18829301-18829320 None:intergenic 40.0%
AAGAATGCAGGTGTAGCTAT+TGG + chr3_4:18829437-18829456 None:intergenic 40.0%
!!! AGAATCGTGGCACGTTTTTT+AGG + chr3_4:18829460-18829479 None:intergenic 40.0%
!! TTTCAGGCATTGGTCAATCA+AGG - chr3_4:18829752-18829771 Msa0493570:intron 40.0%
TAGCCCGTAAAGATGGTATT+AGG - chr3_4:18829797-18829816 Msa0493570:intron 40.0%
! GGAATTTGAGATGGCTATCA+TGG + chr3_4:18829831-18829850 None:intergenic 40.0%
CTTGAAGGAGGAATTTGAGA+TGG + chr3_4:18829840-18829859 None:intergenic 40.0%
GATTCAAACCAAGTATCTCG+AGG + chr3_4:18830129-18830148 None:intergenic 40.0%
ATATCTTGTCGAACATGCTC+AGG + chr3_4:18830158-18830177 None:intergenic 40.0%
! TGTCCTTTTTGTTGCAGAGA+TGG - chr3_4:18830408-18830427 Msa0493570:intron 40.0%
AGAGATGGTGCAAATGTGAA+GGG - chr3_4:18830423-18830442 Msa0493570:intron 40.0%
TGCATCCCATTCATAGCTAT+CGG + chr3_4:18830469-18830488 None:intergenic 40.0%
!! ATCCCAAGTACTCTGCTTTT+TGG - chr3_4:18830547-18830566 Msa0493570:intron 40.0%
! AGCCAAAAAGCAGAGTACTT+GGG + chr3_4:18830552-18830571 None:intergenic 40.0%
CTGCAAAAGTTCCTTCTCAA+GGG - chr3_4:18830570-18830589 Msa0493570:intron 40.0%
TGAGTTATCATCCCTTGAGA+AGG + chr3_4:18830584-18830603 None:intergenic 40.0%
ATCTGCAGCCATGAAAGCTA+CGG - chr3_4:18822993-18823012 Msa0493570:three_prime_UTR 45.0%
CACATGTTGTGATGCAGTTC+CGG + chr3_4:18823070-18823089 None:intergenic 45.0%
CAGACAATGGCCATGAAATG+TGG - chr3_4:18823559-18823578 Msa0493570:intron 45.0%
TTACCGTGTTTGATCGCACA+CGG + chr3_4:18824210-18824229 None:intergenic 45.0%
AACATGCTCAAGACCGTCAT+TGG - chr3_4:18824229-18824248 Msa0493570:intron 45.0%
ATGGGAGAGGACCAAGTATA+TGG - chr3_4:18824616-18824635 Msa0493570:intron 45.0%
TGGGAGAGGACCAAGTATAT+GGG - chr3_4:18824617-18824636 Msa0493570:intron 45.0%
!! GTGAAGGTGTCCCATATACT+TGG + chr3_4:18824630-18824649 None:intergenic 45.0%
CTCAATCAAGAGGGAAAGAG+AGG + chr3_4:18824794-18824813 None:intergenic 45.0%
ATCGGATTCCTAGGAGAATG+TGG + chr3_4:18825144-18825163 None:intergenic 45.0%
AGTGGGTCCTACCATAAAGT+GGG + chr3_4:18825294-18825313 None:intergenic 45.0%
! TAGTGGGTCCTACCATAAAG+TGG + chr3_4:18825295-18825314 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr3_4:18825700-18825719 Msa0493570:intron 45.0%
GTATGACCCACCACTTTATG+TGG - chr3_4:18825930-18825949 Msa0493570:intron 45.0%
TCAATGTGGGACCTACACTT+TGG + chr3_4:18825965-18825984 None:intergenic 45.0%
AAGGGAGCAGTCAATCCTAT+GGG - chr3_4:18826108-18826127 Msa0493570:intron 45.0%
GCCTCCATGGTATCCATTAA+TGG + chr3_4:18826617-18826636 None:intergenic 45.0%
TTGCTCATTCACTGCATCAG+CGG - chr3_4:18826897-18826916 Msa0493570:intron 45.0%
TCGGCAACACTGTTGGAATA+TGG + chr3_4:18827219-18827238 None:intergenic 45.0%
TTTGTGATCGGCAACACTGT+TGG + chr3_4:18827226-18827245 None:intergenic 45.0%
!! TTTTGGGAGTCTGTTACCCA+AGG + chr3_4:18827488-18827507 None:intergenic 45.0%
!! GTCATGTTGATATGGGTTGG+TGG + chr3_4:18827598-18827617 None:intergenic 45.0%
GAACTGGCTATACGTCTATC+CGG - chr3_4:18828412-18828431 Msa0493570:intron 45.0%
GGTCATTGTTAGACCGAACT+GGG + chr3_4:18829017-18829036 None:intergenic 45.0%
AGGTCATTGTTAGACCGAAC+TGG + chr3_4:18829018-18829037 None:intergenic 45.0%
!!! GTTGGTGAGGGTTTTTTGAG+AGG + chr3_4:18829244-18829263 None:intergenic 45.0%
!! GGACGTAACTTTAGGGTTGA+GGG + chr3_4:18829269-18829288 None:intergenic 45.0%
!! AGGACGTAACTTTAGGGTTG+AGG + chr3_4:18829270-18829289 None:intergenic 45.0%
GTGACACGATTTGAGAATCG+TGG + chr3_4:18829473-18829492 None:intergenic 45.0%
CTCTCAACCAAGTGACTTCT+CGG + chr3_4:18830093-18830112 None:intergenic 45.0%
CTCTTCAACCTCGAGATACT+TGG - chr3_4:18830118-18830137 Msa0493570:intron 45.0%
GCACCATCTCTGCAACAAAA+AGG + chr3_4:18830414-18830433 None:intergenic 45.0%
CAGAGATGGTGCAAATGTGA+AGG - chr3_4:18830422-18830441 Msa0493570:intron 45.0%
ATGTGAAGGGCTACTATGCA+TGG - chr3_4:18830436-18830455 Msa0493570:intron 45.0%
GATAGCTATGAATGGGATGC+AGG - chr3_4:18830468-18830487 Msa0493570:intron 45.0%
! CAGCCAAAAAGCAGAGTACT+TGG + chr3_4:18830553-18830572 None:intergenic 45.0%
GCTGCAAAAGTTCCTTCTCA+AGG - chr3_4:18830569-18830588 Msa0493570:intron 45.0%
!!! ACTAATTTTTTTTATATATA+CGG - chr3_4:18826279-18826298 Msa0493570:CDS 5.0%
!!! TTATAAATACATTTTTTTTA+AGG + chr3_4:18827092-18827111 None:intergenic 5.0%
!! TTTCATTAATTTATAAAATA+AGG - chr3_4:18827314-18827333 Msa0493570:CDS 5.0%
TCTGCAGCCATGAAAGCTAC+GGG - chr3_4:18822994-18823013 Msa0493570:three_prime_UTR 50.0%
AAGATTGGGGACCATAGCAG+TGG - chr3_4:18824819-18824838 Msa0493570:intron 50.0%
! TCATGGTGGGACCCACTTTA+TGG - chr3_4:18825280-18825299 Msa0493570:intron 50.0%
CAAGGGAGCAGTCAATCCTA+TGG - chr3_4:18826107-18826126 Msa0493570:intron 50.0%
!! GAGGGCGTTTACCATTTGCT+AGG + chr3_4:18826167-18826186 None:intergenic 50.0%
!! TGGTGTAGCTATTGGCTCCT+CGG - chr3_4:18827778-18827797 Msa0493570:CDS 50.0%
TTGTGCAGACGGATCTGAAC+TGG - chr3_4:18828396-18828415 Msa0493570:intron 50.0%
TGGCTATACGTCTATCCGGA+GGG - chr3_4:18828416-18828435 Msa0493570:intron 50.0%
GATCTCTCTCCCCCAATAGT+AGG + chr3_4:18829038-18829057 None:intergenic 50.0%
!! ACTTTAGGGTTGAGGGTCGT+TGG + chr3_4:18829262-18829281 None:intergenic 50.0%
TGCTCAATCGTGTCACGACA+AGG - chr3_4:18829336-18829355 Msa0493570:intron 50.0%
GGTAGAAAATCGTGGCGTGA+TGG + chr3_4:18829416-18829435 None:intergenic 50.0%
! TCTTTACGGGCTACGTTGAC+TGG + chr3_4:18829790-18829809 None:intergenic 50.0%
GTCAACGTAGCCCGTAAAGA+TGG - chr3_4:18829790-18829809 Msa0493570:intron 50.0%
TGTTCGACCGAGAAGTCACT+TGG - chr3_4:18830083-18830102 Msa0493570:intron 50.0%
GCAGGCTACACGATACGATT+TGG - chr3_4:18830486-18830505 Msa0493570:intron 50.0%
GGAAGGACCCGTAGCTTTCA+TGG + chr3_4:18823004-18823023 None:intergenic 55.0%
AGGCCGTGTGCGATCAAACA+CGG - chr3_4:18824204-18824223 Msa0493570:intron 55.0%
GGTGGGACCCACTTTATGGT+AGG - chr3_4:18825284-18825303 Msa0493570:intron 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr3_4:18825698-18825717 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr3_4:18825695-18825714 Msa0493570:intron 55.0%
CTGGCTATACGTCTATCCGG+AGG - chr3_4:18828415-18828434 Msa0493570:intron 55.0%
!! CAGGTGGAGAAGTGCCTCCA+TGG + chr3_4:18826630-18826649 None:intergenic 60.0%
! GGGTTGAGGGTCGTTGGTGA+GGG + chr3_4:18829256-18829275 None:intergenic 60.0%
AGGGTTGAGGGTCGTTGGTG+AGG + chr3_4:18829257-18829276 None:intergenic 60.0%
GGTGGTCGGAGTTCGAACCC+CGG + chr3_4:18825752-18825771 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 18822983 18830933 18822983 ID=Msa0493570;Name=Msa0493570
chr3_4 mRNA 18822983 18830933 18822983 ID=Msa0493570-mRNA-1;Parent=Msa0493570;Name=Msa0493570-mRNA-1;_AED=0.15;_eAED=0.15;_QI=20|1|1|1|1|1|13|337|511
chr3_4 exon 18822983 18823491 18822983 ID=Msa0493570-mRNA-1:exon:5166;Parent=Msa0493570-mRNA-1
chr3_4 exon 18824050 18824158 18824050 ID=Msa0493570-mRNA-1:exon:5165;Parent=Msa0493570-mRNA-1
chr3_4 exon 18825410 18825512 18825410 ID=Msa0493570-mRNA-1:exon:5164;Parent=Msa0493570-mRNA-1
chr3_4 exon 18826117 18826148 18826117 ID=Msa0493570-mRNA-1:exon:5163;Parent=Msa0493570-mRNA-1
chr3_4 exon 18826267 18826481 18826267 ID=Msa0493570-mRNA-1:exon:5162;Parent=Msa0493570-mRNA-1
chr3_4 exon 18826636 18826751 18826636 ID=Msa0493570-mRNA-1:exon:5161;Parent=Msa0493570-mRNA-1
chr3_4 exon 18827142 18827394 18827142 ID=Msa0493570-mRNA-1:exon:5160;Parent=Msa0493570-mRNA-1
chr3_4 exon 18827521 18827608 18827521 ID=Msa0493570-mRNA-1:exon:5159;Parent=Msa0493570-mRNA-1
chr3_4 exon 18827742 18827813 18827742 ID=Msa0493570-mRNA-1:exon:5158;Parent=Msa0493570-mRNA-1
chr3_4 exon 18828822 18828897 18828822 ID=Msa0493570-mRNA-1:exon:5157;Parent=Msa0493570-mRNA-1
chr3_4 exon 18829041 18829099 18829041 ID=Msa0493570-mRNA-1:exon:5156;Parent=Msa0493570-mRNA-1
chr3_4 exon 18829253 18829322 18829253 ID=Msa0493570-mRNA-1:exon:5155;Parent=Msa0493570-mRNA-1
chr3_4 exon 18830743 18830933 18830743 ID=Msa0493570-mRNA-1:exon:5154;Parent=Msa0493570-mRNA-1
chr3_4 five_prime_UTR 18830914 18830933 18830914 ID=Msa0493570-mRNA-1:five_prime_utr;Parent=Msa0493570-mRNA-1
chr3_4 CDS 18830743 18830913 18830743 ID=Msa0493570-mRNA-1:cds;Parent=Msa0493570-mRNA-1
chr3_4 CDS 18829253 18829322 18829253 ID=Msa0493570-mRNA-1:cds;Parent=Msa0493570-mRNA-1
chr3_4 CDS 18829041 18829099 18829041 ID=Msa0493570-mRNA-1:cds;Parent=Msa0493570-mRNA-1
chr3_4 CDS 18828822 18828897 18828822 ID=Msa0493570-mRNA-1:cds;Parent=Msa0493570-mRNA-1
chr3_4 CDS 18827742 18827813 18827742 ID=Msa0493570-mRNA-1:cds;Parent=Msa0493570-mRNA-1
chr3_4 CDS 18827521 18827608 18827521 ID=Msa0493570-mRNA-1:cds;Parent=Msa0493570-mRNA-1
chr3_4 CDS 18827142 18827394 18827142 ID=Msa0493570-mRNA-1:cds;Parent=Msa0493570-mRNA-1
chr3_4 CDS 18826636 18826751 18826636 ID=Msa0493570-mRNA-1:cds;Parent=Msa0493570-mRNA-1
chr3_4 CDS 18826267 18826481 18826267 ID=Msa0493570-mRNA-1:cds;Parent=Msa0493570-mRNA-1
chr3_4 CDS 18826117 18826148 18826117 ID=Msa0493570-mRNA-1:cds;Parent=Msa0493570-mRNA-1
chr3_4 CDS 18825410 18825512 18825410 ID=Msa0493570-mRNA-1:cds;Parent=Msa0493570-mRNA-1
chr3_4 CDS 18824050 18824158 18824050 ID=Msa0493570-mRNA-1:cds;Parent=Msa0493570-mRNA-1
chr3_4 CDS 18823320 18823491 18823320 ID=Msa0493570-mRNA-1:cds;Parent=Msa0493570-mRNA-1
chr3_4 three_prime_UTR 18822983 18823319 18822983 ID=Msa0493570-mRNA-1:three_prime_utr;Parent=Msa0493570-mRNA-1
Gene Sequence

>Msa0493570

ATGAAAGCTACGGGTCCTTCCCACCTCTATCTTTTTTCTCTGGCTACACTTTTTGCTGTTGTCACCGGAACTGCATCACAACATGTGCATCCAAGTCACTATGCTGCTTCATTCAATAGGACCCTTTTTCCTCCTGATTTTCTCTTTGGAATTGGTTCTTCTGCTTACCAGGTAGAAGGAGCATCAAATATAGATGGGAGAGGACCAAGTATATGGGACACCTTCACTAAACAACATCCAGAAAAGATTGGGGACCATAGCAGTGGTAATATTGGAGCTGATTTTTATCATCGATACAAGAGTGACATAAAGATTATGAAAGAAATTGGGTTGGACTCATACAGATTCTCCATCTCATGGTCAAGAATATTCCCAAAGGGCAAGGGAGCAGTCAATCCTATGGGAGTTAAATTCTACAATAATGTCATTAATGAGGTCCTAGCAAATGGCTTGATACCCTTTGTAACATTGTTTCATTGGGATCTTCCACAAGCTCTTGAAGATGAATATAAGGGATTTCTAAGTCCTAAAGTAGTGAAGGATTTTGAAGCCTATGCTGATTTTTGCTTCAAGACATTTGGAGATAGGGTTAAGCATTGGGTGACACTTAATGAGCCTGTTTCATACACCATTAATGGATACCATGGAGGCACTTCTCCACCTGCAAGATGCTCTAAATATGTTGGAAATTGCTCTACTGGTGACTCAACTACAGAACCCTACATTGTTGCTCATCACTTTATACTTTCTCATGCTGCTGCAGCCAAATTGTATAAGGCCAAATATCAGGCTCATCAAAAAGGAAAAATTGGAATTACCTTGATTACTCACTACTATGAACCATATTCCAACAGTGTTGCCGATCACAAAGCTGCAATTAGAGCACTTGACTTTTTATTTGGATGGTTTGCTCATCCAATTACATATGGTCACTATCCCCAATCAATGATATTATCCTTGGGTAACAGACTCCCAAAATTCACAAAGGAAGAATTTAAAATTATCAAAGGTTCCTATGATTTTCTTGGTGTGAATTATTACACCACATATTATGCACAAAGCATTCCACCAACCCATATCAACATGACCTACTTCACTGATATGCAAGCAAACCTCATTCCAATGAAGAATGGTGTAGCTATTGGCTCCTCGACGGATCTGAACTGGCTATACGTCTATCCGGAGGGAATTCATCATCTTGTGACACACATCAAAGATACGTACAAGAATCCACCAGTGTACATTACTGAAAATGGCATTGGTCAATCAAGGAATGACTCAATACCAGTCAACGTAGCCCGTAAAGATGGTATTAGGATCAGATACCATGATAGCCATCTCAAATTCCTCCTTCAAGCAATAAAAGATGGTGCAAATGTGAAGGGCTACTATGCATGGTCATTTTCCGATAGCTATGAATGGGATGCAGGCTACACGATACGATTTGGAATAATTTATGTCGATTTCGTTAACAATTTGAAAAGATATCCCAAGTACTCTGCTTTTTGGCTGCAAAAGTTCCTTCTCAAGGGATGA
Protein sequence

>Msa0493570

MKATGPSHLYLFSLATLFAVVTGTASQHVHPSHYAASFNRTLFPPDFLFGIGSSAYQVEGASNIDGRGPSIWDTFTKQHPEKIGDHSSGNIGADFYHRYKSDIKIMKEIGLDSYRFSISWSRIFPKGKGAVNPMGVKFYNNVINEVLANGLIPFVTLFHWDLPQALEDEYKGFLSPKVVKDFEAYADFCFKTFGDRVKHWVTLNEPVSYTINGYHGGTSPPARCSKYVGNCSTGDSTTEPYIVAHHFILSHAAAAKLYKAKYQAHQKGKIGITLITHYYEPYSNSVADHKAAIRALDFLFGWFAHPITYGHYPQSMILSLGNRLPKFTKEEFKIIKGSYDFLGVNYYTTYYAQSIPPTHINMTYFTDMQANLIPMKNGVAIGSSTDLNWLYVYPEGIHHLVTHIKDTYKNPPVYITENGIGQSRNDSIPVNVARKDGIRIRYHDSHLKFLLQAIKDGANVKGYYAWSFSDSYEWDAGYTIRFGIIYVDFVNNLKRYPKYSAFWLQKFLLKG*