AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0526640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526640 MtrunA17_Chr1g0201891 99.304 431 3 0 1 431 1 431 0.0 894
Msa0526640 MtrunA17_Chr2g0278511 80.460 435 73 5 1 431 1 427 0.0 703
Msa0526640 MtrunA17_Chr2g0286441 58.073 384 137 5 48 431 34 393 1.09e-157 451
Msa0526640 MtrunA17_Chr5g0404321 53.636 440 171 11 1 431 1 416 1.39e-154 444
Msa0526640 MtrunA17_Chr8g0373001 51.708 439 177 12 1 431 1 412 7.13e-146 421
Msa0526640 MtrunA17_Chr1g0155301 48.690 458 172 9 1 431 1 422 8.31e-146 421
Msa0526640 MtrunA17_Chr1g0196071 50.801 437 174 10 1 431 1 402 5.40e-145 419
Msa0526640 MtrunA17_Chr2g0315641 47.781 383 149 6 50 431 39 371 8.81e-120 353
Msa0526640 MtrunA17_Chr2g0315651 43.377 385 162 10 51 431 35 367 5.80e-96 292
Msa0526640 MtrunA17_Chr8g0373361 42.857 427 197 13 15 424 9 405 7.70e-94 288
Msa0526640 MtrunA17_Chr8g0373331 35.862 435 181 17 1 424 1 348 2.87e-72 231
Msa0526640 MtrunA17_Chr1g0156151 46.544 217 97 6 1 207 1 208 1.34e-56 186
Msa0526640 MtrunA17_Chr8g0373351 32.143 392 131 12 48 423 14 286 2.26e-44 156
Msa0526640 MtrunA17_Chr8g0373341 34.221 263 116 7 1 235 1 234 1.53e-28 114
Msa0526640 MtrunA17_Chr8g0373341 45.098 102 41 3 322 421 232 320 6.83e-17 81.3
Msa0526640 MtrunA17_Chr3g0091401 40.404 99 52 2 95 193 8 99 3.78e-14 68.6
Msa0526640 MtrunA17_Chr2g0334041 36.207 116 47 4 321 430 265 359 2.66e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526640 AT1G76900.2 70.330 455 111 9 1 431 1 455 0.0 610
Msa0526640 AT1G76900.1 70.330 455 111 9 1 431 1 455 0.0 610
Msa0526640 AT1G76900.3 70.330 455 111 9 1 431 1 455 0.0 610
Msa0526640 AT1G43640.1 68.027 441 119 6 1 431 1 429 0.0 600
Msa0526640 AT1G25280.1 70.179 446 117 7 1 431 1 445 0.0 596
Msa0526640 AT1G43640.2 70.053 374 94 4 65 431 1 363 0.0 536
Msa0526640 AT2G47900.2 53.596 431 175 4 1 431 1 406 2.57e-165 471
Msa0526640 AT2G47900.1 53.596 431 175 4 1 431 1 406 2.57e-165 471
Msa0526640 AT2G47900.3 53.472 432 175 5 1 431 1 407 8.64e-164 467
Msa0526640 AT2G18280.2 53.288 441 148 12 1 431 1 393 3.66e-150 432
Msa0526640 AT2G18280.1 53.288 441 148 12 1 431 1 393 3.66e-150 432
Msa0526640 AT1G47270.3 55.181 386 135 5 48 431 39 388 4.34e-142 411
Msa0526640 AT1G47270.1 55.181 386 135 5 48 431 64 413 8.42e-142 411
Msa0526640 AT1G47270.2 55.181 386 135 5 48 431 63 412 1.02e-141 411
Msa0526640 AT5G18680.1 50.777 386 156 7 49 431 35 389 1.51e-130 382
Msa0526640 AT3G06380.1 51.706 381 149 9 53 431 33 380 5.19e-127 372
Msa0526640 AT1G25280.3 69.776 268 71 6 173 431 1 267 3.58e-123 358
Msa0526640 AT1G25280.2 69.776 268 71 6 173 431 1 267 3.58e-123 358
Msa0526640 AT1G53320.1 47.520 383 156 5 50 431 41 379 2.29e-118 350
Msa0526640 AT5G18680.2 51.227 326 126 6 108 431 3 297 3.57e-106 316
Msa0526640 AT3G06380.2 51.420 317 120 8 116 431 5 288 4.15e-99 298
Msa0526640 AT1G61940.2 55.814 86 38 0 56 141 1 86 2.79e-28 112
Msa0526640 AT1G61940.1 59.375 64 26 0 56 119 1 64 8.74e-20 88.6

Find 140 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATGAGCTCTGGCTGGCC+TGG 0.187108 3_4:-80558807 None:intergenic
ATACCCTCTCTCGGCCTTTC+AGG 0.201509 3_4:+80559211 Msa0526640:CDS
GCAGCATTGCTTGTTGAAAA+TGG 0.220754 3_4:+80558011 Msa0526640:intron
GGGCCATGTTCAAAAGAAAA+AGG 0.265901 3_4:-80559446 None:intergenic
CATCCTATGAATTCCTAAAA+TGG 0.266277 3_4:-80559325 None:intergenic
ATGTTGGTGCCTTAACTTTA+GGG 0.281753 3_4:+80559010 Msa0526640:CDS
AATGTTGGTGCCTTAACTTT+AGG 0.285851 3_4:+80559009 Msa0526640:CDS
CTTTCCGATGTAAGTGTTAC+TGG 0.296608 3_4:-80558120 None:intergenic
CTGTAGGTTCTCAGATATAA+TGG 0.306980 3_4:+80558902 Msa0526640:CDS
CTCACCTGCTTCAGAGAAAC+AGG 0.315099 3_4:-80557176 None:intergenic
TTAAATCATAACTTACATAA+AGG 0.320718 3_4:-80559469 None:intergenic
CCAAACTTCAATGATAAATA+AGG 0.326259 3_4:-80556236 None:intergenic
GAATGAGCTCTGGCTGGCCT+GGG 0.345465 3_4:-80558806 None:intergenic
GCCAGCTGAGCATTGTTATA+GGG 0.349030 3_4:-80558603 None:intergenic
CATGGGCTGTTCTGTATAAC+TGG 0.352285 3_4:-80556981 None:intergenic
AGCCAGCTGAGCATTGTTAT+AGG 0.353413 3_4:-80558604 None:intergenic
TAAATCATAACTTACATAAA+GGG 0.359283 3_4:-80559468 None:intergenic
GTCGCTCCTCATGCCGCAAC+AGG 0.364636 3_4:+80559095 Msa0526640:CDS
CCTTATTTATCATTGAAGTT+TGG 0.367982 3_4:+80556236 Msa0526640:five_prime_UTR
CGTGATGTGAGGGATGGATT+TGG 0.379788 3_4:+80556867 Msa0526640:CDS
TCATTGAAGTTTGGTGTTTG+AGG 0.387907 3_4:+80556245 Msa0526640:five_prime_UTR
CTCTTCCTTTGCCTCAGTCC+TGG 0.393245 3_4:+80557557 Msa0526640:CDS
TTCCAATACACTGACAGTTT+CGG 0.405986 3_4:-80556820 None:intergenic
TTCCGAAACTGTCAGTGTAT+TGG 0.407688 3_4:+80556818 Msa0526640:five_prime_UTR
GAAAGAATCCTCAAGATTGC+GGG 0.410283 3_4:-80558829 None:intergenic
CTCTGTGCAAGTCGTTCTTC+TGG 0.410800 3_4:-80558060 None:intergenic
TACTTTACAATTTAACTATG+AGG 0.421934 3_4:-80559374 None:intergenic
GCATGAGGAGCGACAGGTGC+AGG 0.424142 3_4:-80559086 None:intergenic
TAACTGCCACTAGGGACCTT+TGG 0.430993 3_4:-80558669 None:intergenic
TCGTGATGTTATTAAGAGAT+TGG 0.435663 3_4:+80557028 Msa0526640:CDS
TTTCCCTGTTTCTCTGAAGC+AGG 0.440467 3_4:+80557172 Msa0526640:CDS
TGCAGTTGTTCATGCCATCT+AGG 0.445754 3_4:-80558987 None:intergenic
GACAAGATTATTCTTCAGTT+CGG 0.446887 3_4:+80559152 Msa0526640:CDS
AATGCTCAGCTGGCTCCTCC+TGG 0.452432 3_4:+80558612 Msa0526640:CDS
CCCGCTTCATCCCTCGAGCC+TGG 0.453190 3_4:+80558774 Msa0526640:CDS
AAGGCTTCCTGGACATCAAA+GGG 0.458001 3_4:+80556917 Msa0526640:CDS
CACAGAGTATGTTATATCAA+TGG 0.458685 3_4:+80558076 Msa0526640:CDS
GAGCCTGGTGGTGTTGTCCC+AGG 0.458781 3_4:+80558789 Msa0526640:CDS
TGTGCTGGCTGCGACGGAGC+AGG 0.465017 3_4:-80559119 None:intergenic
TGGAAGCAACTGAGAGTACT+TGG 0.468061 3_4:+80557048 Msa0526640:CDS
ACATTGGGAAGAGATTGTTT+TGG 0.470443 3_4:-80559402 None:intergenic
TGTAGGTTCTCAGATATAAT+GGG 0.470818 3_4:+80558903 Msa0526640:CDS
AGATTGCGGGGAATGAGCTC+TGG 0.475959 3_4:-80558816 None:intergenic
TGTATCATAAATTATGAACT+TGG 0.479777 3_4:-80558574 None:intergenic
TCCCTATAACAATGCTCAGC+TGG 0.484175 3_4:+80558602 Msa0526640:CDS
AAGGGGCAAGTCGCGTAGTT+CGG 0.484348 3_4:+80556935 Msa0526640:CDS
TGCGGGGAATGAGCTCTGGC+TGG 0.484831 3_4:-80558812 None:intergenic
GACTTGCCCCTTTGATGTCC+AGG 0.489493 3_4:-80556924 None:intergenic
ACCTATGAGTTGAATGTCCT+TGG 0.490286 3_4:+80558708 Msa0526640:CDS
TTGTCATGGTCTGACTGTGC+TGG 0.490534 3_4:-80559134 None:intergenic
CCAGGCTCGAGGGATGAAGC+GGG 0.492821 3_4:-80558774 None:intergenic
TGAAGACGAGGAGGAGGGGA+AGG 0.493522 3_4:+80558935 Msa0526640:CDS
TCACACGTCCCCTAAAGTTA+AGG 0.494461 3_4:-80559019 None:intergenic
TGGCAATGAAGACGAGGAGG+AGG 0.494605 3_4:+80558929 Msa0526640:CDS
ACCAAGGACATTCAACTCAT+AGG 0.504041 3_4:-80558709 None:intergenic
TTGAATCTACGGCTGCGTCC+AGG 0.511465 3_4:-80558630 None:intergenic
TTAAGAACAAGTCTCCTAGA+TGG 0.514190 3_4:+80558973 Msa0526640:CDS
GTTGCGGCATGAGGAGCGAC+AGG 0.514556 3_4:-80559092 None:intergenic
TCTGACTGTGCTGGCTGCGA+CGG 0.514689 3_4:-80559125 None:intergenic
GCAGGTCCTGTTGCGGCATG+AGG 0.520662 3_4:-80559101 None:intergenic
CATTCAACTCATAGGTGACC+TGG 0.520911 3_4:-80558701 None:intergenic
TGGCCTGGGACAACACCACC+AGG 0.526446 3_4:-80558792 None:intergenic
GAGGTTGATCATGCAACTCA+TGG 0.527376 3_4:-80556959 None:intergenic
CAGGACTGAGGCAAAGGAAG+AGG 0.529546 3_4:-80557556 None:intergenic
TTCTCAGATATAATGGGAGC+TGG 0.533677 3_4:+80558909 Msa0526640:CDS
CCCATGGGCTAGCCTTCCAC+CGG 0.534682 3_4:+80556998 Msa0526640:CDS
ACACTTACATCGGAAAGCTT+AGG 0.535916 3_4:+80558126 Msa0526640:CDS
AAATCATAACTTACATAAAG+GGG 0.537842 3_4:-80559467 None:intergenic
GCGATGTTGTAACTGCCACT+AGG 0.538385 3_4:-80558678 None:intergenic
GTAGTATTGTTCGTGATGTG+AGG 0.542989 3_4:+80556856 Msa0526640:CDS
CACGAAGAAGCTCCGGTGGA+AGG 0.548406 3_4:-80557010 None:intergenic
ACCAGGCTCGAGGGATGAAG+CGG 0.552625 3_4:-80558775 None:intergenic
TCCGGTGGAAGGCTAGCCCA+TGG 0.553438 3_4:-80556999 None:intergenic
TAAGGCTTCCTGGACATCAA+AGG 0.555010 3_4:+80556916 Msa0526640:CDS
ATTCTTCAGTTCGGTAAAGT+CGG 0.555879 3_4:+80559161 Msa0526640:CDS
TTCGTGGGCCTCTAGTACCA+AGG 0.556399 3_4:-80558725 None:intergenic
GCTTACCAGGACTGAGGCAA+AGG 0.556568 3_4:-80557562 None:intergenic
GCTCATTCCCCGCAATCTTG+AGG 0.558110 3_4:+80558821 Msa0526640:CDS
TTACAGCCGGGGTATAGGGA+TGG 0.560354 3_4:+80557485 Msa0526640:intron
ATAGTGCAATTCATCCTTCG+TGG 0.560544 3_4:-80558741 None:intergenic
ACATATCGCAAAAGCCTGAA+AGG 0.562316 3_4:-80559225 None:intergenic
ATAACATCACGAAGAAGCTC+CGG 0.562691 3_4:-80557017 None:intergenic
GGACAACACCACCAGGCTCG+AGG 0.563929 3_4:-80558785 None:intergenic
CGATGTTGTAACTGCCACTA+GGG 0.565087 3_4:-80558677 None:intergenic
GTGCTGCGGTCTGCAAGTCG+TGG 0.571719 3_4:+80557096 Msa0526640:CDS
GCAACTGAGAGTACTTGGCC+TGG 0.572741 3_4:+80557053 Msa0526640:CDS
ATTGTTCGTGATGTGAGGGA+TGG 0.573863 3_4:+80556861 Msa0526640:CDS
CCGGTGGAAGGCTAGCCCAT+GGG 0.574926 3_4:-80556998 None:intergenic
TTGAATGTCCTTGGTACTAG+AGG 0.577348 3_4:+80558717 Msa0526640:CDS
GGCAATGAAGACGAGGAGGA+GGG 0.579076 3_4:+80558930 Msa0526640:CDS
ACTGAAGAATAATCTTGTCA+TGG 0.579174 3_4:-80559148 None:intergenic
GGCATGAACAACTGCAATGT+TGG 0.579920 3_4:+80558994 Msa0526640:CDS
GCAATGAAGACGAGGAGGAG+GGG 0.583215 3_4:+80558931 Msa0526640:CDS
GACTTGTTCTTAAGAACTAG+AGG 0.583735 3_4:-80558963 None:intergenic
GACTGAGGCAAAGGAAGAGG+TGG 0.586469 3_4:-80557553 None:intergenic
TCAACACTCTTGAATACTGT+GGG 0.587893 3_4:+80557141 Msa0526640:CDS
CAGTTATACAGAACAGCCCA+TGG 0.589286 3_4:+80556982 Msa0526640:CDS
CGACGGAGCAGGTCCTGTTG+CGG 0.591288 3_4:-80559108 None:intergenic
GGAAAGAATCCTCAAGATTG+CGG 0.599386 3_4:-80558830 None:intergenic
TAGTGCAATTCATCCTTCGT+GGG 0.600652 3_4:-80558740 None:intergenic
TGTTGGTGCCTTAACTTTAG+GGG 0.601599 3_4:+80559011 Msa0526640:CDS
CAACTGAGTTTAGCAGCTGT+AGG 0.602372 3_4:+80558886 Msa0526640:CDS
TTTGTCACAAAAGACACTCA+AGG 0.608290 3_4:-80556790 None:intergenic
AATCATAACTTACATAAAGG+GGG 0.613988 3_4:-80559466 None:intergenic
GTTATCGATCGATCGTGCAA+AGG 0.614484 3_4:-80558862 None:intergenic
GACAACACCACCAGGCTCGA+GGG 0.616356 3_4:-80558784 None:intergenic
GTCAACACTCTTGAATACTG+TGG 0.616544 3_4:+80557140 Msa0526640:CDS
GTTGTGACTTGTAACTAGAG+TGG 0.617694 3_4:+80556757 Msa0526640:five_prime_UTR
TAGTATTGTTCGTGATGTGA+GGG 0.622920 3_4:+80556857 Msa0526640:CDS
GGACTATCGATACCCTCTCT+CGG 0.623014 3_4:+80559202 Msa0526640:CDS
AAAGCCTGAAAGGCCGAGAG+AGG 0.624015 3_4:-80559215 None:intergenic
TCAGTTCGGTAAAGTCGGCA+AGG 0.626177 3_4:+80559166 Msa0526640:CDS
AGCTGAGCATTGTTATAGGG+AGG 0.628040 3_4:-80558600 None:intergenic
GCAACCACATGCTTACGACC+AGG 0.629724 3_4:-80557071 None:intergenic
AGATCCAGTAACACTTACAT+CGG 0.632514 3_4:+80558116 Msa0526640:CDS
CAGGCTCGAGGGATGAAGCG+GGG 0.635955 3_4:-80558773 None:intergenic
GCATGTGGTTGCTTGTGCTG+CGG 0.636839 3_4:+80557082 Msa0526640:CDS
TGGCAGTTACAACATCGCCC+AGG 0.640405 3_4:+80558683 Msa0526640:CDS
ATCGTGCAAAGGATAAACTA+CGG 0.641987 3_4:-80558851 None:intergenic
ACATCACGAAGAAGCTCCGG+TGG 0.646205 3_4:-80557014 None:intergenic
ATTCAACTCATAGGTGACCT+GGG 0.649004 3_4:-80558700 None:intergenic
AAGCCTGAAAGGCCGAGAGA+GGG 0.649007 3_4:-80559214 None:intergenic
CGGCAAGGATATGTTTACGA+TGG 0.649091 3_4:+80559181 Msa0526640:CDS
GCTTCATCCCTCGAGCCTGG+TGG 0.650835 3_4:+80558777 Msa0526640:CDS
AGCTGGCAATGAAGACGAGG+AGG 0.651988 3_4:+80558926 Msa0526640:CDS
ATGGATTTGGAAGCTTATCG+AGG 0.653763 3_4:+80556880 Msa0526640:CDS
GGGAGCTGGCAATGAAGACG+AGG 0.656703 3_4:+80558923 Msa0526640:CDS
GGGCTGTTCTGTATAACTGG+AGG 0.657426 3_4:-80556978 None:intergenic
AAAGAATCCTCAAGATTGCG+GGG 0.658101 3_4:-80558828 None:intergenic
AGTTATACAGAACAGCCCAT+GGG 0.669811 3_4:+80556983 Msa0526640:CDS
TTGGCCTGGTCGTAAGCATG+TGG 0.677764 3_4:+80557067 Msa0526640:CDS
AATCTACGGCTGCGTCCAGG+AGG 0.679597 3_4:-80558627 None:intergenic
GTTTCACCAAAGGTCCCTAG+TGG 0.689726 3_4:+80558663 Msa0526640:CDS
GATTTGGAAGCTTATCGAGG+CGG 0.694204 3_4:+80556883 Msa0526640:CDS
ATGGGTCCATCCCTATACCC+CGG 0.704486 3_4:-80557491 None:intergenic
AGGCTTCCTGGACATCAAAG+GGG 0.710405 3_4:+80556918 Msa0526640:CDS
AGTAAAGCTTACCAGGACTG+AGG 0.714219 3_4:-80557568 None:intergenic
TCACCTGCTTCAGAGAAACA+GGG 0.717293 3_4:-80557175 None:intergenic
TTGGTACTAGAGGCCCACGA+AGG 0.736988 3_4:+80558727 Msa0526640:CDS
ATAGTGACAAGAGATACATG+TGG 0.812071 3_4:+80559280 Msa0526640:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAACAACTTATCAA+AGG - chr3_4:80556450-80556469 None:intergenic 15.0%
!! TAAATCATAACTTACATAAA+GGG - chr3_4:80559471-80559490 None:intergenic 15.0%
!! TTAAATCATAACTTACATAA+AGG - chr3_4:80559472-80559491 None:intergenic 15.0%
!! AAAAGATGTTAAAAAACAAG+TGG + chr3_4:80557223-80557242 Msa0526640:intron 20.0%
!! TTATAATATTTAGTGTGCAA+CGG - chr3_4:80557415-80557434 None:intergenic 20.0%
!!! ATATTATAAAATTTAGAGCC+TGG + chr3_4:80557426-80557445 Msa0526640:intron 20.0%
!! AAGCACATAAATGAAAAATT+AGG - chr3_4:80557452-80557471 None:intergenic 20.0%
!! ATCAAATCAAATAGTGTATT+AGG - chr3_4:80557603-80557622 None:intergenic 20.0%
!!! AGAAACTTTTCATTTTCATA+TGG - chr3_4:80557842-80557861 None:intergenic 20.0%
!! CGTTAAATTCATATTTATGA+GGG - chr3_4:80557943-80557962 None:intergenic 20.0%
!! TCGTTAAATTCATATTTATG+AGG - chr3_4:80557944-80557963 None:intergenic 20.0%
!!! ATTTAACGAATTTTTAGATC+TGG + chr3_4:80557955-80557974 Msa0526640:intron 20.0%
!!! TGAATTTAATTTGTATGCAT+TGG + chr3_4:80558273-80558292 Msa0526640:intron 20.0%
!!! TTTTTCGTAAAGTAATTCTT+GGG - chr3_4:80558474-80558493 None:intergenic 20.0%
!!! ATTTTTCGTAAAGTAATTCT+TGG - chr3_4:80558475-80558494 None:intergenic 20.0%
!! TGTATCATAAATTATGAACT+TGG - chr3_4:80558577-80558596 None:intergenic 20.0%
!! TACTTTACAATTTAACTATG+AGG - chr3_4:80559377-80559396 None:intergenic 20.0%
!! ACAAGATAAAAAAAGACATT+GGG - chr3_4:80559420-80559439 None:intergenic 20.0%
!! AAATCATAACTTACATAAAG+GGG - chr3_4:80559470-80559489 None:intergenic 20.0%
! CCAAACTTCAATGATAAATA+AGG - chr3_4:80556239-80556258 None:intergenic 25.0%
!! CCTTATTTATCATTGAAGTT+TGG + chr3_4:80556236-80556255 Msa0526640:five_prime_UTR 25.0%
!!! TGTCAGAAACAATTTTAAGA+TGG - chr3_4:80556536-80556555 None:intergenic 25.0%
!!! AATTGTTTCTGACAAAAGTA+TGG + chr3_4:80556542-80556561 Msa0526640:intron 25.0%
!!! TTTAAACTGCTTTAGCTTTT+AGG + chr3_4:80556568-80556587 Msa0526640:intron 25.0%
!!! TGATCATTAAGTATTGAAGA+TGG + chr3_4:80556684-80556703 Msa0526640:intron 25.0%
!!! ATATGGACTCTATTTGTTTT+AGG + chr3_4:80557781-80557800 Msa0526640:intron 25.0%
!!! AATTTTTAGATCTGGTTTGT+CGG + chr3_4:80557963-80557982 Msa0526640:intron 25.0%
! ATTGTCTTGTAAAAAGTTGA+TGG + chr3_4:80558235-80558254 Msa0526640:intron 25.0%
! TTTAAATAGCGAGATCTAAT+TGG + chr3_4:80558382-80558401 Msa0526640:intron 25.0%
! TTAAATAGCGAGATCTAATT+GGG + chr3_4:80558383-80558402 Msa0526640:intron 25.0%
!! TGTGTAAAATTGGTTTACAT+TGG + chr3_4:80558410-80558429 Msa0526640:intron 25.0%
!! TAGAATGTAATCTCCATTTT+AGG + chr3_4:80559312-80559331 Msa0526640:three_prime_UTR 25.0%
! GACAAGATAAAAAAAGACAT+TGG - chr3_4:80559421-80559440 None:intergenic 25.0%
! AATCATAACTTACATAAAGG+GGG - chr3_4:80559469-80559488 None:intergenic 25.0%
ATCTTACACTCTCTACTTTA+AGG + chr3_4:80556274-80556293 Msa0526640:intron 30.0%
TCTTGTGAATGTTTCTCATA+AGG + chr3_4:80556318-80556337 Msa0526640:intron 30.0%
CTTGTGAATGTTTCTCATAA+GGG + chr3_4:80556319-80556338 Msa0526640:intron 30.0%
ATTTGATTCCTGTTCTCATA+AGG + chr3_4:80556357-80556376 Msa0526640:intron 30.0%
TTTGATTCCTGTTCTCATAA+GGG + chr3_4:80556358-80556377 Msa0526640:intron 30.0%
TCGTGATGTTATTAAGAGAT+TGG + chr3_4:80557028-80557047 Msa0526640:CDS 30.0%
TGGTTAATGAGTTTCAGTTA+AGG + chr3_4:80557243-80557262 Msa0526640:intron 30.0%
CATAAATGAAAAATTAGGCC+AGG - chr3_4:80557447-80557466 None:intergenic 30.0%
!!! TGTTGATTTTGTTTTACAGC+CGG + chr3_4:80557472-80557491 Msa0526640:intron 30.0%
AAAGAGAAAGATGAATTGCT+TGG - chr3_4:80557727-80557746 None:intergenic 30.0%
! CTTTTCATTTTCATATGGCA+TGG - chr3_4:80557837-80557856 None:intergenic 30.0%
CACAGAGTATGTTATATCAA+TGG + chr3_4:80558076-80558095 Msa0526640:CDS 30.0%
!!! CATTTTGTTTTCGATCTGTT+TGG + chr3_4:80558164-80558183 Msa0526640:intron 30.0%
CACATGCACAAATATCTAAT+TGG - chr3_4:80558340-80558359 None:intergenic 30.0%
TTAGATATTTGTGCATGTGT+AGG + chr3_4:80558341-80558360 Msa0526640:intron 30.0%
TAGATATTTGTGCATGTGTA+GGG + chr3_4:80558342-80558361 Msa0526640:intron 30.0%
TATTAACTTTCTCCTCTTTC+AGG + chr3_4:80558535-80558554 Msa0526640:intron 30.0%
AAGAAAATTAGACCTGAAAG+AGG - chr3_4:80558550-80558569 None:intergenic 30.0%
!! TCTTTCAGGTCTAATTTTCT+TGG + chr3_4:80558549-80558568 Msa0526640:intron 30.0%
!!! CTTTTTTCGAGTTGAATCTA+CGG - chr3_4:80558644-80558663 None:intergenic 30.0%
TGTAGGTTCTCAGATATAAT+GGG + chr3_4:80558903-80558922 Msa0526640:CDS 30.0%
ACTGAAGAATAATCTTGTCA+TGG - chr3_4:80559151-80559170 None:intergenic 30.0%
GACAAGATTATTCTTCAGTT+CGG + chr3_4:80559152-80559171 Msa0526640:CDS 30.0%
!! TCTCCATTTTAGGAATTCAT+AGG + chr3_4:80559322-80559341 Msa0526640:three_prime_UTR 30.0%
CATCCTATGAATTCCTAAAA+TGG - chr3_4:80559328-80559347 None:intergenic 30.0%
!! CATTTTAGGAATTCATAGGA+TGG + chr3_4:80559326-80559345 Msa0526640:three_prime_UTR 30.0%
!! TCATTGAAGTTTGGTGTTTG+AGG + chr3_4:80556245-80556264 Msa0526640:five_prime_UTR 35.0%
TAGTCAGTCTAACTTCTCAT+AGG - chr3_4:80556485-80556504 None:intergenic 35.0%
AGTTAGACTGACTATTGAGA+AGG + chr3_4:80556491-80556510 Msa0526640:intron 35.0%
!!! TTTAGCTTTTAGGTCCATGT+GGG + chr3_4:80556578-80556597 Msa0526640:intron 35.0%
TTTGTCACAAAAGACACTCA+AGG - chr3_4:80556793-80556812 None:intergenic 35.0%
TTCCAATACACTGACAGTTT+CGG - chr3_4:80556823-80556842 None:intergenic 35.0%
TAGTATTGTTCGTGATGTGA+GGG + chr3_4:80556857-80556876 Msa0526640:CDS 35.0%
TCAACACTCTTGAATACTGT+GGG + chr3_4:80557141-80557160 Msa0526640:CDS 35.0%
TTACAGTTAGGGTTCAAAGT+CGG - chr3_4:80557288-80557307 None:intergenic 35.0%
ACCCTAACTGTAACAATCAT+TGG + chr3_4:80557295-80557314 Msa0526640:intron 35.0%
GCCAATGATTGTTACAGTTA+GGG - chr3_4:80557299-80557318 None:intergenic 35.0%
TCAGGAGATTAGTAGAAGTT+TGG - chr3_4:80557321-80557340 None:intergenic 35.0%
!!! GTTGATTTTGTTTTACAGCC+GGG + chr3_4:80557473-80557492 Msa0526640:intron 35.0%
!!! TTGATTTTGTTTTACAGCCG+GGG + chr3_4:80557474-80557493 Msa0526640:intron 35.0%
! CTTTTGATGAAACACTGGAT+GGG - chr3_4:80557512-80557531 None:intergenic 35.0%
! TCTTTTGATGAAACACTGGA+TGG - chr3_4:80557513-80557532 None:intergenic 35.0%
! TGTCTCTTTTGATGAAACAC+TGG - chr3_4:80557517-80557536 None:intergenic 35.0%
TCAACAAAGTAAAGCTTACC+AGG - chr3_4:80557578-80557597 None:intergenic 35.0%
TTATGAGTTATCGCATTTCG+TGG + chr3_4:80557673-80557692 Msa0526640:intron 35.0%
GAATTGCTTGGATTGACAAA+GGG - chr3_4:80557715-80557734 None:intergenic 35.0%
TGAATTGCTTGGATTGACAA+AGG - chr3_4:80557716-80557735 None:intergenic 35.0%
TAATTCTGCTGAACTGCATA+TGG + chr3_4:80557764-80557783 Msa0526640:intron 35.0%
GCATGGACAACAAGAAATAT+TGG - chr3_4:80557820-80557839 None:intergenic 35.0%
!!! GGTTCAATTTTTTGCTATGC+TGG + chr3_4:80557879-80557898 Msa0526640:intron 35.0%
AGATCCAGTAACACTTACAT+CGG + chr3_4:80558116-80558135 Msa0526640:CDS 35.0%
GTTATGAGATACTCTGTCTA+TGG - chr3_4:80558204-80558223 None:intergenic 35.0%
GTAAAGTAATTCTTGGGTGA+TGG - chr3_4:80558468-80558487 None:intergenic 35.0%
CTCGAAAAAAGTTTCACCAA+AGG + chr3_4:80558653-80558672 Msa0526640:CDS 35.0%
ATCGTGCAAAGGATAAACTA+CGG - chr3_4:80558854-80558873 None:intergenic 35.0%
CTGTAGGTTCTCAGATATAA+TGG + chr3_4:80558902-80558921 Msa0526640:CDS 35.0%
! GACTTGTTCTTAAGAACTAG+AGG - chr3_4:80558966-80558985 None:intergenic 35.0%
TTAAGAACAAGTCTCCTAGA+TGG + chr3_4:80558973-80558992 Msa0526640:CDS 35.0%
! AATGTTGGTGCCTTAACTTT+AGG + chr3_4:80559009-80559028 Msa0526640:CDS 35.0%
! ATGTTGGTGCCTTAACTTTA+GGG + chr3_4:80559010-80559029 Msa0526640:CDS 35.0%
ATTCTTCAGTTCGGTAAAGT+CGG + chr3_4:80559161-80559180 Msa0526640:CDS 35.0%
ATAGTGACAAGAGATACATG+TGG + chr3_4:80559280-80559299 Msa0526640:exon 35.0%
! ACATTGGGAAGAGATTGTTT+TGG - chr3_4:80559405-80559424 None:intergenic 35.0%
! TGCCCTTTTTCTTTTGAACA+TGG + chr3_4:80559443-80559462 Msa0526640:three_prime_UTR 35.0%
GGCCATGTTCAAAAGAAAAA+GGG - chr3_4:80559448-80559467 None:intergenic 35.0%
!!! CTTTAGCTTTTAGGTCCATG+TGG + chr3_4:80556577-80556596 Msa0526640:intron 40.0%
!! TTAGCTTTTAGGTCCATGTG+GGG + chr3_4:80556579-80556598 Msa0526640:intron 40.0%
! GTTGTGACTTGTAACTAGAG+TGG + chr3_4:80556757-80556776 Msa0526640:five_prime_UTR 40.0%
TTCCGAAACTGTCAGTGTAT+TGG + chr3_4:80556818-80556837 Msa0526640:five_prime_UTR 40.0%
GTAGTATTGTTCGTGATGTG+AGG + chr3_4:80556856-80556875 Msa0526640:CDS 40.0%
ATGGATTTGGAAGCTTATCG+AGG + chr3_4:80556880-80556899 Msa0526640:CDS 40.0%
AGTTATACAGAACAGCCCAT+GGG + chr3_4:80556983-80557002 Msa0526640:CDS 40.0%
ATAACATCACGAAGAAGCTC+CGG - chr3_4:80557020-80557039 None:intergenic 40.0%
GTCAACACTCTTGAATACTG+TGG + chr3_4:80557140-80557159 Msa0526640:CDS 40.0%
GGCCAATGATTGTTACAGTT+AGG - chr3_4:80557300-80557319 None:intergenic 40.0%
AACGACAGGGTTAAGACAAA+AGG + chr3_4:80557368-80557387 Msa0526640:intron 40.0%
TTCTATCCTACTTTGCGTGT+TGG + chr3_4:80557858-80557877 Msa0526640:intron 40.0%
ATTGAACCAACACGCAAAGT+AGG - chr3_4:80557867-80557886 None:intergenic 40.0%
! TTTTCAACAAGCAATGCTGC+AGG - chr3_4:80558011-80558030 None:intergenic 40.0%
! GCAGCATTGCTTGTTGAAAA+TGG + chr3_4:80558011-80558030 Msa0526640:intron 40.0%
CTTTCCGATGTAAGTGTTAC+TGG - chr3_4:80558123-80558142 None:intergenic 40.0%
ACACTTACATCGGAAAGCTT+AGG + chr3_4:80558126-80558145 Msa0526640:CDS 40.0%
TACATCGGAAAGCTTAGGTA+TGG + chr3_4:80558131-80558150 Msa0526640:intron 40.0%
ATTGGGCGTCTGTGTAAAAT+TGG + chr3_4:80558400-80558419 Msa0526640:intron 40.0%
! TTCTTGGGTGATGGCAAAAA+AGG - chr3_4:80558459-80558478 None:intergenic 40.0%
ATTCAACTCATAGGTGACCT+GGG - chr3_4:80558703-80558722 None:intergenic 40.0%
! ACCTATGAGTTGAATGTCCT+TGG + chr3_4:80558708-80558727 Msa0526640:CDS 40.0%
ACCAAGGACATTCAACTCAT+AGG - chr3_4:80558712-80558731 None:intergenic 40.0%
TTGAATGTCCTTGGTACTAG+AGG + chr3_4:80558717-80558736 Msa0526640:CDS 40.0%
TAGTGCAATTCATCCTTCGT+GGG - chr3_4:80558743-80558762 None:intergenic 40.0%
ATAGTGCAATTCATCCTTCG+TGG - chr3_4:80558744-80558763 None:intergenic 40.0%
AAAGAATCCTCAAGATTGCG+GGG - chr3_4:80558831-80558850 None:intergenic 40.0%
GAAAGAATCCTCAAGATTGC+GGG - chr3_4:80558832-80558851 None:intergenic 40.0%
GGAAAGAATCCTCAAGATTG+CGG - chr3_4:80558833-80558852 None:intergenic 40.0%
! TTCTCAGATATAATGGGAGC+TGG + chr3_4:80558909-80558928 Msa0526640:CDS 40.0%
! TGTTGGTGCCTTAACTTTAG+GGG + chr3_4:80559011-80559030 Msa0526640:CDS 40.0%
ACATATCGCAAAAGCCTGAA+AGG - chr3_4:80559228-80559247 None:intergenic 40.0%
GGGCCATGTTCAAAAGAAAA+AGG - chr3_4:80559449-80559468 None:intergenic 40.0%
! GTTTCTCATAAGGGTGTGTG+AGG + chr3_4:80556328-80556347 Msa0526640:intron 45.0%
TCCTGTTCTCATAAGGGAAG+AGG + chr3_4:80556364-80556383 Msa0526640:intron 45.0%
TCCTCTTCCCTTATGAGAAC+AGG - chr3_4:80556368-80556387 None:intergenic 45.0%
TCATCAAACAAAGCCCCACA+TGG - chr3_4:80556595-80556614 None:intergenic 45.0%
ATTGTTCGTGATGTGAGGGA+TGG + chr3_4:80556861-80556880 Msa0526640:CDS 45.0%
GATTTGGAAGCTTATCGAGG+CGG + chr3_4:80556883-80556902 Msa0526640:CDS 45.0%
!!! AGTTTTGAGGTAAGGCTTCC+TGG + chr3_4:80556906-80556925 Msa0526640:CDS 45.0%
TAAGGCTTCCTGGACATCAA+AGG + chr3_4:80556916-80556935 Msa0526640:CDS 45.0%
AAGGCTTCCTGGACATCAAA+GGG + chr3_4:80556917-80556936 Msa0526640:CDS 45.0%
! GAGGTTGATCATGCAACTCA+TGG - chr3_4:80556962-80556981 None:intergenic 45.0%
! CATGGGCTGTTCTGTATAAC+TGG - chr3_4:80556984-80557003 None:intergenic 45.0%
CAGTTATACAGAACAGCCCA+TGG + chr3_4:80556982-80557001 Msa0526640:CDS 45.0%
!! TGGAAGCAACTGAGAGTACT+TGG + chr3_4:80557048-80557067 Msa0526640:CDS 45.0%
!! TTTCCCTGTTTCTCTGAAGC+AGG + chr3_4:80557172-80557191 Msa0526640:CDS 45.0%
TCACCTGCTTCAGAGAAACA+GGG - chr3_4:80557178-80557197 None:intergenic 45.0%
TAATCTCCTGACCGATTACC+AGG + chr3_4:80557330-80557349 Msa0526640:intron 45.0%
AATCTCCTGACCGATTACCA+GGG + chr3_4:80557331-80557350 Msa0526640:intron 45.0%
!! TTGTTTTACAGCCGGGGTAT+AGG + chr3_4:80557480-80557499 Msa0526640:intron 45.0%
! TGTTTTACAGCCGGGGTATA+GGG + chr3_4:80557481-80557500 Msa0526640:intron 45.0%
AGTAAAGCTTACCAGGACTG+AGG - chr3_4:80557571-80557590 None:intergenic 45.0%
! AGCTGAGCATTGTTATAGGG+AGG - chr3_4:80558603-80558622 None:intergenic 45.0%
TCCCTATAACAATGCTCAGC+TGG + chr3_4:80558602-80558621 Msa0526640:CDS 45.0%
! GCCAGCTGAGCATTGTTATA+GGG - chr3_4:80558606-80558625 None:intergenic 45.0%
! AGCCAGCTGAGCATTGTTAT+AGG - chr3_4:80558607-80558626 None:intergenic 45.0%
CGATGTTGTAACTGCCACTA+GGG - chr3_4:80558680-80558699 None:intergenic 45.0%
CATTCAACTCATAGGTGACC+TGG - chr3_4:80558704-80558723 None:intergenic 45.0%
GTTATCGATCGATCGTGCAA+AGG - chr3_4:80558865-80558884 None:intergenic 45.0%
CAACTGAGTTTAGCAGCTGT+AGG + chr3_4:80558886-80558905 Msa0526640:CDS 45.0%
TGCAGTTGTTCATGCCATCT+AGG - chr3_4:80558990-80559009 None:intergenic 45.0%
GGCATGAACAACTGCAATGT+TGG + chr3_4:80558994-80559013 Msa0526640:CDS 45.0%
TCACACGTCCCCTAAAGTTA+AGG - chr3_4:80559022-80559041 None:intergenic 45.0%
CGGCAAGGATATGTTTACGA+TGG + chr3_4:80559181-80559200 Msa0526640:CDS 45.0%
! CGTGATGTGAGGGATGGATT+TGG + chr3_4:80556867-80556886 Msa0526640:CDS 50.0%
! CTTATCGAGGCGGAGTTTTG+AGG + chr3_4:80556893-80556912 Msa0526640:CDS 50.0%
AGGCTTCCTGGACATCAAAG+GGG + chr3_4:80556918-80556937 Msa0526640:CDS 50.0%
GGGCTGTTCTGTATAACTGG+AGG - chr3_4:80556981-80557000 None:intergenic 50.0%
CTCACCTGCTTCAGAGAAAC+AGG - chr3_4:80557179-80557198 None:intergenic 50.0%
ATCTCCTGACCGATTACCAG+GGG + chr3_4:80557332-80557351 Msa0526640:intron 50.0%
TCTTAACCCTGTCGTTCCCA+GGG - chr3_4:80557364-80557383 None:intergenic 50.0%
CTCTGTGCAAGTCGTTCTTC+TGG - chr3_4:80558063-80558082 None:intergenic 50.0%
GTTTCACCAAAGGTCCCTAG+TGG + chr3_4:80558663-80558682 Msa0526640:CDS 50.0%
TAACTGCCACTAGGGACCTT+TGG - chr3_4:80558672-80558691 None:intergenic 50.0%
GCGATGTTGTAACTGCCACT+AGG - chr3_4:80558681-80558700 None:intergenic 50.0%
TTGTCATGGTCTGACTGTGC+TGG - chr3_4:80559137-80559156 None:intergenic 50.0%
TCAGTTCGGTAAAGTCGGCA+AGG + chr3_4:80559166-80559185 Msa0526640:CDS 50.0%
GGACTATCGATACCCTCTCT+CGG + chr3_4:80559202-80559221 Msa0526640:CDS 50.0%
!!! CGAGGCGGAGTTTTGAGGTA+AGG + chr3_4:80556898-80556917 Msa0526640:CDS 55.0%
GACTTGCCCCTTTGATGTCC+AGG - chr3_4:80556927-80556946 None:intergenic 55.0%
AAGGGGCAAGTCGCGTAGTT+CGG + chr3_4:80556935-80556954 Msa0526640:CDS 55.0%
ACATCACGAAGAAGCTCCGG+TGG - chr3_4:80557017-80557036 None:intergenic 55.0%
!! GCAACTGAGAGTACTTGGCC+TGG + chr3_4:80557053-80557072 Msa0526640:CDS 55.0%
TTGGCCTGGTCGTAAGCATG+TGG + chr3_4:80557067-80557086 Msa0526640:CDS 55.0%
GCAACCACATGCTTACGACC+AGG - chr3_4:80557074-80557093 None:intergenic 55.0%
GCATGTGGTTGCTTGTGCTG+CGG + chr3_4:80557082-80557101 Msa0526640:CDS 55.0%
CTTAACCCTGTCGTTCCCAG+GGG - chr3_4:80557363-80557382 None:intergenic 55.0%
GTCTTAACCCTGTCGTTCCC+AGG - chr3_4:80557365-80557384 None:intergenic 55.0%
TTACAGCCGGGGTATAGGGA+TGG + chr3_4:80557485-80557504 Msa0526640:intron 55.0%
ATGGGTCCATCCCTATACCC+CGG - chr3_4:80557494-80557513 None:intergenic 55.0%
GACTGAGGCAAAGGAAGAGG+TGG - chr3_4:80557556-80557575 None:intergenic 55.0%
CAGGACTGAGGCAAAGGAAG+AGG - chr3_4:80557559-80557578 None:intergenic 55.0%
CTCTTCCTTTGCCTCAGTCC+TGG + chr3_4:80557557-80557576 Msa0526640:CDS 55.0%
GCTTACCAGGACTGAGGCAA+AGG - chr3_4:80557565-80557584 None:intergenic 55.0%
TTGAATCTACGGCTGCGTCC+AGG - chr3_4:80558633-80558652 None:intergenic 55.0%
TGGCAGTTACAACATCGCCC+AGG + chr3_4:80558683-80558702 Msa0526640:CDS 55.0%
TTCGTGGGCCTCTAGTACCA+AGG - chr3_4:80558728-80558747 None:intergenic 55.0%
TTGGTACTAGAGGCCCACGA+AGG + chr3_4:80558727-80558746 Msa0526640:CDS 55.0%
AGATTGCGGGGAATGAGCTC+TGG - chr3_4:80558819-80558838 None:intergenic 55.0%
GCTCATTCCCCGCAATCTTG+AGG + chr3_4:80558821-80558840 Msa0526640:CDS 55.0%
AGCTGGCAATGAAGACGAGG+AGG + chr3_4:80558926-80558945 Msa0526640:CDS 55.0%
TGGCAATGAAGACGAGGAGG+AGG + chr3_4:80558929-80558948 Msa0526640:CDS 55.0%
GGCAATGAAGACGAGGAGGA+GGG + chr3_4:80558930-80558949 Msa0526640:CDS 55.0%
GCAATGAAGACGAGGAGGAG+GGG + chr3_4:80558931-80558950 Msa0526640:CDS 55.0%
ATACCCTCTCTCGGCCTTTC+AGG + chr3_4:80559211-80559230 Msa0526640:CDS 55.0%
AAGCCTGAAAGGCCGAGAGA+GGG - chr3_4:80559217-80559236 None:intergenic 55.0%
AAAGCCTGAAAGGCCGAGAG+AGG - chr3_4:80559218-80559237 None:intergenic 55.0%
CACGAAGAAGCTCCGGTGGA+AGG - chr3_4:80557013-80557032 None:intergenic 60.0%
AAGGCCCCTGGTAATCGGTC+AGG - chr3_4:80557339-80557358 None:intergenic 60.0%
GGGGAAAGGCCCCTGGTAAT+CGG - chr3_4:80557344-80557363 None:intergenic 60.0%
ATTACCAGGGGCCTTTCCCC+TGG + chr3_4:80557344-80557363 Msa0526640:intron 60.0%
TTACCAGGGGCCTTTCCCCT+GGG + chr3_4:80557345-80557364 Msa0526640:intron 60.0%
CCTTTCCCCTGGGAACGACA+GGG + chr3_4:80557355-80557374 Msa0526640:intron 60.0%
! AATGCTCAGCTGGCTCCTCC+TGG + chr3_4:80558612-80558631 Msa0526640:CDS 60.0%
AATCTACGGCTGCGTCCAGG+AGG - chr3_4:80558630-80558649 None:intergenic 60.0%
ACCAGGCTCGAGGGATGAAG+CGG - chr3_4:80558778-80558797 None:intergenic 60.0%
GACAACACCACCAGGCTCGA+GGG - chr3_4:80558787-80558806 None:intergenic 60.0%
!! GAATGAGCTCTGGCTGGCCT+GGG - chr3_4:80558809-80558828 None:intergenic 60.0%
GGGAGCTGGCAATGAAGACG+AGG + chr3_4:80558923-80558942 Msa0526640:CDS 60.0%
TGAAGACGAGGAGGAGGGGA+AGG + chr3_4:80558935-80558954 Msa0526640:CDS 60.0%
!! TCTGACTGTGCTGGCTGCGA+CGG - chr3_4:80559128-80559147 None:intergenic 60.0%
! CCGGTGGAAGGCTAGCCCAT+GGG - chr3_4:80557001-80557020 None:intergenic 65.0%
!! CCCATGGGCTAGCCTTCCAC+CGG + chr3_4:80556998-80557017 Msa0526640:CDS 65.0%
! TCCGGTGGAAGGCTAGCCCA+TGG - chr3_4:80557002-80557021 None:intergenic 65.0%
GTGCTGCGGTCTGCAAGTCG+TGG + chr3_4:80557096-80557115 Msa0526640:CDS 65.0%
GCCTTTCCCCTGGGAACGAC+AGG + chr3_4:80557354-80557373 Msa0526640:intron 65.0%
CCCTGTCGTTCCCAGGGGAA+AGG - chr3_4:80557358-80557377 None:intergenic 65.0%
CAGGCTCGAGGGATGAAGCG+GGG - chr3_4:80558776-80558795 None:intergenic 65.0%
CCAGGCTCGAGGGATGAAGC+GGG - chr3_4:80558777-80558796 None:intergenic 65.0%
GCTTCATCCCTCGAGCCTGG+TGG + chr3_4:80558777-80558796 Msa0526640:CDS 65.0%
GGACAACACCACCAGGCTCG+AGG - chr3_4:80558788-80558807 None:intergenic 65.0%
!! GAGCCTGGTGGTGTTGTCCC+AGG + chr3_4:80558789-80558808 Msa0526640:CDS 65.0%
TGGCCTGGGACAACACCACC+AGG - chr3_4:80558795-80558814 None:intergenic 65.0%
! GGAATGAGCTCTGGCTGGCC+TGG - chr3_4:80558810-80558829 None:intergenic 65.0%
! TGCGGGGAATGAGCTCTGGC+TGG - chr3_4:80558815-80558834 None:intergenic 65.0%
GCATGAGGAGCGACAGGTGC+AGG - chr3_4:80559089-80559108 None:intergenic 65.0%
GTTGCGGCATGAGGAGCGAC+AGG - chr3_4:80559095-80559114 None:intergenic 65.0%
GTCGCTCCTCATGCCGCAAC+AGG + chr3_4:80559095-80559114 Msa0526640:CDS 65.0%
GCAGGTCCTGTTGCGGCATG+AGG - chr3_4:80559104-80559123 None:intergenic 65.0%
CGACGGAGCAGGTCCTGTTG+CGG - chr3_4:80559111-80559130 None:intergenic 65.0%
GTTCCCAGGGGAAAGGCCCC+TGG - chr3_4:80557351-80557370 None:intergenic 70.0%
CCCGCTTCATCCCTCGAGCC+TGG + chr3_4:80558774-80558793 Msa0526640:CDS 70.0%
!! TGTGCTGGCTGCGACGGAGC+AGG - chr3_4:80559122-80559141 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 80556178 80559569 80556178 ID=Msa0526640;Name=Msa0526640
chr3_4 mRNA 80556178 80559569 80556178 ID=Msa0526640-mRNA-1;Parent=Msa0526640;Name=Msa0526640-mRNA-1;_AED=0.03;_eAED=0.03;_QI=194|1|1|1|0.75|0.6|5|286|431
chr3_4 exon 80556178 80556266 80556178 ID=Msa0526640-mRNA-1:exon:24198;Parent=Msa0526640-mRNA-1
chr3_4 exon 80556741 80557193 80556741 ID=Msa0526640-mRNA-1:exon:24199;Parent=Msa0526640-mRNA-1
chr3_4 exon 80557491 80557578 80557491 ID=Msa0526640-mRNA-1:exon:24200;Parent=Msa0526640-mRNA-1
chr3_4 exon 80558015 80558147 80558015 ID=Msa0526640-mRNA-1:exon:24201;Parent=Msa0526640-mRNA-1
chr3_4 exon 80558557 80559569 80558557 ID=Msa0526640-mRNA-1:exon:24202;Parent=Msa0526640-mRNA-1
chr3_4 five_prime_UTR 80556178 80556266 80556178 ID=Msa0526640-mRNA-1:five_prime_utr;Parent=Msa0526640-mRNA-1
chr3_4 five_prime_UTR 80556741 80556845 80556741 ID=Msa0526640-mRNA-1:five_prime_utr;Parent=Msa0526640-mRNA-1
chr3_4 CDS 80556846 80557193 80556846 ID=Msa0526640-mRNA-1:cds;Parent=Msa0526640-mRNA-1
chr3_4 CDS 80557491 80557578 80557491 ID=Msa0526640-mRNA-1:cds;Parent=Msa0526640-mRNA-1
chr3_4 CDS 80558015 80558147 80558015 ID=Msa0526640-mRNA-1:cds;Parent=Msa0526640-mRNA-1
chr3_4 CDS 80558557 80559283 80558557 ID=Msa0526640-mRNA-1:cds;Parent=Msa0526640-mRNA-1
chr3_4 three_prime_UTR 80559284 80559569 80559284 ID=Msa0526640-mRNA-1:three_prime_utr;Parent=Msa0526640-mRNA-1
Gene Sequence

>Msa0526640

ATGTCATTTCGTAGTATTGTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCGAGGCGGAGTTTTGAGGTAAGGCTTCCTGGACATCAAAGGGGCAAGTCGCGTAGTTCGGTCCATGAGTTGCATGATCAACCTCCAGTTATACAGAACAGCCCATGGGCTAGCCTTCCACCGGAGCTTCTTCGTGATGTTATTAAGAGATTGGAAGCAACTGAGAGTACTTGGCCTGGTCGTAAGCATGTGGTTGCTTGTGCTGCGGTCTGCAAGTCGTGGAGAGAAATGTGCAAAGAAATTGTCAACACTCTTGAATACTGTGGGAAGATTACTTTCCCTGTTTCTCTGAAGCAGCCGGGGTATAGGGATGGACCCATCCAGTGTTTCATCAAAAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTTGCCTCAGTCCTGCATTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGTACCAGAAGAACGACTTGCACAGAGTATGTTATATCAATGGATGCAGATAACATATCAAGATCCAGTAACACTTACATCGGAAAGCTTAGGTCTAATTTTCTTGGAACCAAGTTCATAATTTATGATACACAGCCTCCCTATAACAATGCTCAGCTGGCTCCTCCTGGACGCAGCCGTAGATTCAACTCGAAAAAAGTTTCACCAAAGGTCCCTAGTGGCAGTTACAACATCGCCCAGGTCACCTATGAGTTGAATGTCCTTGGTACTAGAGGCCCACGAAGGATGAATTGCACTATGCACTCAATCCCCGCTTCATCCCTCGAGCCTGGTGGTGTTGTCCCAGGCCAGCCAGAGCTCATTCCCCGCAATCTTGAGGATTCTTTCCGTAGTTTATCCTTTGCACGATCGATCGATAACTCAACTGAGTTTAGCAGCTGTAGGTTCTCAGATATAATGGGAGCTGGCAATGAAGACGAGGAGGAGGGGAAGGAGAGACCTCTAGTTCTTAAGAACAAGTCTCCTAGATGGCATGAACAACTGCAATGTTGGTGCCTTAACTTTAGGGGACGTGTGACTGTTGCGTCTGTTAAGAACTTTCAGCTGATCGCTGCAGCACAGCCTGCACCTGTCGCTCCTCATGCCGCAACAGGACCTGCTCCGTCGCAGCCAGCACAGTCAGACCATGACAAGATTATTCTTCAGTTCGGTAAAGTCGGCAAGGATATGTTTACGATGGACTATCGATACCCTCTCTCGGCCTTTCAGGCTTTTGCGATATGTTTGACTAGCTTTGACACAAAACTTGCATGTGAATAG

Protein sequence

>Msa0526640

MSFRSIVRDVRDGFGSLSRRSFEVRLPGHQRGKSRSSVHELHDQPPVIQNSPWASLPPELLRDVIKRLEATESTWPGRKHVVACAAVCKSWREMCKEIVNTLEYCGKITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQLAPPGRSRRFNSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMHSIPASSLEPGGVVPGQPELIPRNLEDSFRSLSFARSIDNSTEFSSCRFSDIMGAGNEDEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAQPAPVAPHAATGPAPSQPAQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE*