AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0846640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0846640 MtrunA17_Chr5g0418241 96.970 231 7 0 1 231 1 231 8.43e-167 459
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0846640 AT1G69390.1 60.345 232 78 6 4 228 5 229 2.80e-88 260

Find 69 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATGAATCATTATTATAAA+TGG 0.210288 5_4:-27077762 Msa0846640:three_prime_UTR
CCTTACCGATGAAGCCAATT+TGG 0.232046 5_4:-27077927 Msa0846640:three_prime_UTR
TCATCCACCACTTGATATTC+TGG 0.244756 5_4:+27078107 None:intergenic
TTTCTTTGAGCGTTTAAATT+TGG 0.250395 5_4:-27078390 Msa0846640:CDS
GGAGAAAGTTCTCAGCTTCT+TGG 0.278127 5_4:+27078432 None:intergenic
AAGGACACTGGAGATATTTC+AGG 0.278153 5_4:-27078056 Msa0846640:CDS
AATGGAGGGTCCTGCATATC+TGG 0.296453 5_4:-27078566 Msa0846640:CDS
TATCAAGTGGTGGATGAAAC+TGG 0.298342 5_4:-27078101 Msa0846640:CDS
CTATCAACAATGACGATTTC+CGG 0.302005 5_4:-27080241 Msa0846640:exon
AATAACAAATATTGAGTATA+AGG 0.315113 5_4:-27078075 Msa0846640:CDS
AAACCAAACTAACAGATAAA+AGG 0.325589 5_4:+27077828 None:intergenic
CTTCTGTTCACTGTTGTTGC+AGG 0.334998 5_4:+27080292 None:intergenic
GGGGTGATTGAGGGGCAAAT+AGG 0.356199 5_4:-27080323 Msa0846640:five_prime_UTR
GTTGTCATGGTGGAACGTTT+TGG 0.358148 5_4:+27078536 None:intergenic
GTCTCTGCAGATACAGATAT+TGG 0.363379 5_4:-27078170 Msa0846640:CDS
ATATATACAGCACTCCAAAT+TGG 0.363721 5_4:+27077913 None:intergenic
TGCAAATTGAAGCTTCTGTT+AGG 0.382712 5_4:-27077887 Msa0846640:three_prime_UTR
TAGATTTGATTTCTATGTTC+CGG 0.386558 5_4:-27078021 Msa0846640:CDS
GGGTTTCAAACACTGCCTTC+TGG 0.387886 5_4:+27077948 None:intergenic
GGGCACTGTAACAGAGTAAA+TGG 0.390263 5_4:+27078145 None:intergenic
GGGTGATTGAGGGGCAAATA+GGG 0.395557 5_4:-27080322 Msa0846640:five_prime_UTR
CAAAATCAAGACATTTCATC+CGG 0.406142 5_4:+27078002 None:intergenic
AATCATCTTCAGACGTTGCT+TGG 0.438839 5_4:+27078310 None:intergenic
CCAAATTGGCTTCATCGGTA+AGG 0.447661 5_4:+27077927 None:intergenic
TTCTGGTTTAACCCGCCGTA+CGG 0.471214 5_4:+27078124 None:intergenic
GCAAATTGAAGCTTCTGTTA+GGG 0.479915 5_4:-27077886 Msa0846640:three_prime_UTR
CAAATTGGCTTCATCGGTAA+GGG 0.481861 5_4:+27077928 None:intergenic
GAAGAAGAGGGTGTGAGCGA+TGG 0.482102 5_4:+27080188 None:intergenic
AGAGGGTGTGAGCGATGGAG+TGG 0.486682 5_4:+27080193 None:intergenic
TTCATTGTTTCTTAAATGGA+GGG 0.495949 5_4:-27078580 Msa0846640:CDS
GTAAAACGACGACGTATTGA+AGG 0.497528 5_4:-27080344 Msa0846640:five_prime_UTR
TGGGGTGAATCCAGATATGC+AGG 0.499751 5_4:+27078556 None:intergenic
CGTATTGAAGGGGTGATTGA+GGG 0.506554 5_4:-27080332 Msa0846640:five_prime_UTR
AAAGATGTGGTTGGAAGAAG+AGG 0.512578 5_4:+27080175 None:intergenic
TATTAGTTAGAATAAAATCA+TGG 0.512591 5_4:-27077695 Msa0846640:three_prime_UTR
CTAAGAAAAGCTCCGTTGCT+AGG 0.515407 5_4:-27078337 Msa0846640:CDS
TTTCATTGTTTCTTAAATGG+AGG 0.517610 5_4:-27078581 Msa0846640:CDS
AGTTTGTAGTTGATTCTCAC+TGG 0.519979 5_4:-27077739 Msa0846640:three_prime_UTR
TCTGGTTTAACCCGCCGTAC+GGG 0.523775 5_4:+27078125 None:intergenic
GGAGGAAGAAAAGATGTGGT+TGG 0.525930 5_4:+27080166 None:intergenic
TTGAGCGTTTAAATTTGGCT+TGG 0.527703 5_4:-27078385 Msa0846640:CDS
ACGTATTGAAGGGGTGATTG+AGG 0.530806 5_4:-27080333 Msa0846640:five_prime_UTR
AGAAGCACTGAAAATCCGTT+GGG 0.545517 5_4:-27080274 Msa0846640:five_prime_UTR
TAAAACGACGACGTATTGAA+GGG 0.547390 5_4:-27080343 Msa0846640:five_prime_UTR
CAGAAGCACTGAAAATCCGT+TGG 0.550049 5_4:-27080275 Msa0846640:five_prime_UTR
GCACTCCAAATTGGCTTCAT+CGG 0.551783 5_4:+27077922 None:intergenic
TGCAGTGACTCTAATGTCAC+CGG 0.560939 5_4:+27080222 None:intergenic
TGTTACAGTGCCCGTACGGC+GGG 0.561780 5_4:-27078135 Msa0846640:CDS
ATTGCTTCGTACAGTTGTCA+TGG 0.565206 5_4:+27078523 None:intergenic
ATCAAGTGGTGGATGAAACT+GGG 0.583073 5_4:-27078100 Msa0846640:CDS
AATATTGAGTATAAGGACAC+TGG 0.585790 5_4:-27078068 Msa0846640:CDS
AACTCATATTAACAGCATCA+AGG 0.588920 5_4:+27078411 None:intergenic
AAGATGTGGTTGGAAGAAGA+GGG 0.588988 5_4:+27080176 None:intergenic
ACTCTGTTACAGTGCCCGTA+CGG 0.591809 5_4:-27078139 Msa0846640:CDS
ATTGAAGCTTCTGTTAGGGT+GGG 0.592456 5_4:-27077882 Msa0846640:three_prime_UTR
AATTGAAGCTTCTGTTAGGG+TGG 0.604482 5_4:-27077883 Msa0846640:three_prime_UTR
ATGTTGACTTCTTTGCCAGA+AGG 0.604673 5_4:-27077963 Msa0846640:three_prime_UTR
GAACGATACGATACCTTTGG+AGG 0.606285 5_4:+27080148 None:intergenic
GTATTGAAGGGGTGATTGAG+GGG 0.620739 5_4:-27080331 Msa0846640:five_prime_UTR
GATAGCTTCGTATTTCCCAA+CGG 0.621750 5_4:+27080259 None:intergenic
CTTTGGAGGAAGAAAAGATG+TGG 0.629115 5_4:+27080162 None:intergenic
CTGTTACAGTGCCCGTACGG+CGG 0.640114 5_4:-27078136 Msa0846640:CDS
TTGCTTGGCAATCCTAGCAA+CGG 0.640673 5_4:+27078325 None:intergenic
TAAACCAGAATATCAAGTGG+TGG 0.645335 5_4:-27078111 Msa0846640:CDS
GCTTCGTACAGTTGTCATGG+TGG 0.658571 5_4:+27078526 None:intergenic
AAAACGACGACGTATTGAAG+GGG 0.691642 5_4:-27080342 Msa0846640:five_prime_UTR
GGTTAAACCAGAATATCAAG+TGG 0.711520 5_4:-27078114 Msa0846640:CDS
ACTGTACGAAGCAATATGCG+TGG 0.720099 5_4:-27078515 Msa0846640:CDS
TCGATGTGAAGTAAGTGATG+AGG 0.741244 5_4:-27078276 Msa0846640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCTTTTTTCTCTAATTA+GGG - chr5_4:27077906-27077925 Msa0846640:three_prime_UTR 15.0%
!! ATTTATGTATGTATTTAGTT+TGG - chr5_4:27078132-27078151 Msa0846640:CDS 15.0%
!!! TTTAAGTTAATTATATGTGT+CGG - chr5_4:27078247-27078266 Msa0846640:CDS 15.0%
!! ATAAATATAAGCTTAAAACA+TGG + chr5_4:27078398-27078417 None:intergenic 15.0%
!!! ATGTTTTAAGCTTATATTTA+TGG - chr5_4:27078397-27078416 Msa0846640:CDS 15.0%
!!! TGTAGTTTTTGTTAAAATTT+TGG - chr5_4:27078470-27078489 Msa0846640:CDS 15.0%
!! AATAACAAATATTGAGTATA+AGG - chr5_4:27079955-27079974 Msa0846640:intron 15.0%
!! GTATGAATCATTATTATAAA+TGG - chr5_4:27080268-27080287 Msa0846640:five_prime_UTR 15.0%
!! TATTAGTTAGAATAAAATCA+TGG - chr5_4:27080335-27080354 Msa0846640:five_prime_UTR 15.0%
!! CTAATTAGAGAAAAAAGAAA+AGG + chr5_4:27077907-27077926 None:intergenic 20.0%
!!! CTTTTCTTTTTTCTCTAATT+AGG - chr5_4:27077905-27077924 Msa0846640:three_prime_UTR 20.0%
!!! TATTTTCTCTTGCAAATTAA+CGG - chr5_4:27077958-27077977 Msa0846640:three_prime_UTR 20.0%
!!! TGTTACTGTTGTTTTAATAA+TGG - chr5_4:27078053-27078072 Msa0846640:CDS 20.0%
!!! TTTTAACAAAAACTACACTT+TGG + chr5_4:27078467-27078486 None:intergenic 20.0%
!!! TTTTGTTAAAATTTTGGTAG+CGG - chr5_4:27078476-27078495 Msa0846640:CDS 20.0%
!!! CTTTGTTATAGATGTATTTT+CGG - chr5_4:27078555-27078574 Msa0846640:CDS 20.0%
!!! AACATGTGATATAATTTTCA+AGG + chr5_4:27078592-27078611 None:intergenic 20.0%
!! TGTTTGAGTAATAAAAATGA+AGG - chr5_4:27078608-27078627 Msa0846640:intron 20.0%
!! GTTTGAGTAATAAAAATGAA+GGG - chr5_4:27078609-27078628 Msa0846640:intron 20.0%
!! TTTGAGTAATAAAAATGAAG+GGG - chr5_4:27078610-27078629 Msa0846640:intron 20.0%
!! AAAGTAGAAGATATTGAATT+GGG + chr5_4:27078877-27078896 None:intergenic 20.0%
!! AAATACACTTATACATGATA+AGG - chr5_4:27078914-27078933 Msa0846640:intron 20.0%
!!! TCAAACATGTCATATTTTAT+GGG - chr5_4:27079002-27079021 Msa0846640:intron 20.0%
!!! ATATTTAATTTAGATGCTTG+TGG - chr5_4:27079307-27079326 Msa0846640:intron 20.0%
!!! AACATTTTGTAAATCTTGTA+AGG + chr5_4:27079385-27079404 None:intergenic 20.0%
!!! GATTTTCATTGTTTCTTAAA+TGG - chr5_4:27079446-27079465 Msa0846640:intron 20.0%
!!! TGTCTTGATTTTGAAATAAA+AGG - chr5_4:27080038-27080057 Msa0846640:intron 20.0%
!! TCCTATCATAAAGTTAAAAA+CGG + chr5_4:27080234-27080253 None:intergenic 20.0%
!!! AATTTCAAGTTCAGAAATGT+TGG - chr5_4:27078108-27078127 Msa0846640:CDS 25.0%
!!! TGTATGTATTTAGTTTGGTT+TGG - chr5_4:27078137-27078156 Msa0846640:CDS 25.0%
!! GACTACAGTAATTGAAATTT+TGG - chr5_4:27078353-27078372 Msa0846640:CDS 25.0%
! TGAGTTTGAAGAAATTATTG+TGG - chr5_4:27078420-27078439 Msa0846640:CDS 25.0%
! GAGTTTGAAGAAATTATTGT+GGG - chr5_4:27078421-27078440 Msa0846640:CDS 25.0%
! AATCCAAACTTGTACTAAAA+TGG - chr5_4:27078525-27078544 Msa0846640:CDS 25.0%
! TCACTATGTCCAATAATAAT+TGG - chr5_4:27078713-27078732 Msa0846640:intron 25.0%
!! GACAAATTTCTTTTGCAAAT+AGG + chr5_4:27078739-27078758 None:intergenic 25.0%
!!! CTTTGAAACAAACTTATTCT+GGG + chr5_4:27078761-27078780 None:intergenic 25.0%
!!! TTGAAAGCGTCAATTATTTT+AGG + chr5_4:27078789-27078808 None:intergenic 25.0%
! CAAAGTAGAAGATATTGAAT+TGG + chr5_4:27078878-27078897 None:intergenic 25.0%
!! GTCAAACATGTCATATTTTA+TGG - chr5_4:27079001-27079020 Msa0846640:intron 25.0%
!! CAAACATGTCATATTTTATG+GGG - chr5_4:27079003-27079022 Msa0846640:intron 25.0%
!! AAACATGTCATATTTTATGG+GGG - chr5_4:27079004-27079023 Msa0846640:intron 25.0%
! AACACATATTTCCAATCAAA+TGG + chr5_4:27079109-27079128 None:intergenic 25.0%
!! TATTTTCTCCAATTTCTCTA+AGG + chr5_4:27079154-27079173 None:intergenic 25.0%
!! CCTTTTTGATATTCAGTATA+GGG - chr5_4:27079239-27079258 Msa0846640:intron 25.0%
!! CTTTTTGATATTCAGTATAG+GGG - chr5_4:27079240-27079259 Msa0846640:intron 25.0%
! CAGAACAATTAAGATTAACA+AGG + chr5_4:27079415-27079434 None:intergenic 25.0%
!! TTTCATTGTTTCTTAAATGG+AGG - chr5_4:27079449-27079468 Msa0846640:intron 25.0%
!! TTCATTGTTTCTTAAATGGA+GGG - chr5_4:27079450-27079469 Msa0846640:intron 25.0%
! TTTCTTTGAGCGTTTAAATT+TGG - chr5_4:27079640-27079659 Msa0846640:intron 25.0%
!! TAGATTTGATTTCTATGTTC+CGG - chr5_4:27080009-27080028 Msa0846640:intron 25.0%
! AAACCAAACTAACAGATAAA+AGG + chr5_4:27080205-27080224 None:intergenic 25.0%
!!! ACCGTTTTTAACTTTATGAT+AGG - chr5_4:27080230-27080249 Msa0846640:CDS 25.0%
AATAAAAATGAAGGGGAATG+AGG - chr5_4:27078617-27078636 Msa0846640:intron 30.0%
TGTTATTGTCTACACTCTAT+AGG - chr5_4:27078664-27078683 Msa0846640:intron 30.0%
ACATAGTGAGTAATGAATTG+TGG + chr5_4:27078702-27078721 None:intergenic 30.0%
GCAAATAGGCCAATTATTAT+TGG + chr5_4:27078725-27078744 None:intergenic 30.0%
!! CCTTTGAAACAAACTTATTC+TGG + chr5_4:27078762-27078781 None:intergenic 30.0%
! CCAGAATAAGTTTGTTTCAA+AGG - chr5_4:27078759-27078778 Msa0846640:intron 30.0%
! ATTGACGCTTTCAATTTTGA+AGG - chr5_4:27078795-27078814 Msa0846640:intron 30.0%
TATCTTCTACTTTGCATCAA+CGG - chr5_4:27078884-27078903 Msa0846640:intron 30.0%
! TTTTGTTGATCTGTGTGAAA+TGG - chr5_4:27078979-27078998 Msa0846640:intron 30.0%
! AACATGTCATATTTTATGGG+GGG - chr5_4:27079005-27079024 Msa0846640:intron 30.0%
TCCACTTTATTCCATTTGAT+TGG - chr5_4:27079095-27079114 Msa0846640:intron 30.0%
TCCAATCAAATGGAATAAAG+TGG + chr5_4:27079099-27079118 None:intergenic 30.0%
! GCCTTTTTGATATTCAGTAT+AGG - chr5_4:27079238-27079257 Msa0846640:intron 30.0%
CCCTATACTGAATATCAAAA+AGG + chr5_4:27079242-27079261 None:intergenic 30.0%
TCTTAATTGTTCTGTCTAAC+AGG - chr5_4:27079421-27079440 Msa0846640:intron 30.0%
ATGAAAAATTAGAACCTCCA+AGG + chr5_4:27079565-27079584 None:intergenic 30.0%
AACTCATATTAACAGCATCA+AGG + chr5_4:27079622-27079641 None:intergenic 30.0%
AATATTGAGTATAAGGACAC+TGG - chr5_4:27079962-27079981 Msa0846640:intron 30.0%
CAAAATCAAGACATTTCATC+CGG + chr5_4:27080031-27080050 None:intergenic 30.0%
ATATATACAGCACTCCAAAT+TGG + chr5_4:27080120-27080139 None:intergenic 30.0%
! ACACCTTTTATCTGTTAGTT+TGG - chr5_4:27080199-27080218 Msa0846640:CDS 30.0%
CTATCAACAATGACGATTTC+CGG - chr5_4:27077789-27077808 Msa0846640:three_prime_UTR 35.0%
TATTATCAATGTCAGCGTTC+TGG + chr5_4:27078208-27078227 None:intergenic 35.0%
AATGAAGCACAAATACTCCT+TGG + chr5_4:27078319-27078338 None:intergenic 35.0%
!! CCACCATTTTAGTACAAGTT+TGG + chr5_4:27078531-27078550 None:intergenic 35.0%
CCAAACTTGTACTAAAATGG+TGG - chr5_4:27078528-27078547 Msa0846640:CDS 35.0%
AGAAGATATTGAATTGGGAG+TGG + chr5_4:27078872-27078891 None:intergenic 35.0%
CACTAATACTTTGGTCTAGA+GGG + chr5_4:27079058-27079077 None:intergenic 35.0%
TATGCACTCCACTAATACTT+TGG + chr5_4:27079067-27079086 None:intergenic 35.0%
! TTTCTCCAATTTCTCTAAGG+CGG + chr5_4:27079151-27079170 None:intergenic 35.0%
TTAATTTAGATGCTTGTGGC+TGG - chr5_4:27079311-27079330 Msa0846640:intron 35.0%
TTGAGCGTTTAAATTTGGCT+TGG - chr5_4:27079645-27079664 Msa0846640:intron 35.0%
! TTTTCTTAGACACTGCTGAT+GGG + chr5_4:27079682-27079701 None:intergenic 35.0%
GGTTAAACCAGAATATCAAG+TGG - chr5_4:27079916-27079935 Msa0846640:intron 35.0%
TAAACCAGAATATCAAGTGG+TGG - chr5_4:27079919-27079938 Msa0846640:intron 35.0%
TGCAAATTGAAGCTTCTGTT+AGG - chr5_4:27080143-27080162 Msa0846640:intron 35.0%
GCAAATTGAAGCTTCTGTTA+GGG - chr5_4:27080144-27080163 Msa0846640:intron 35.0%
! AGTTTGTAGTTGATTCTCAC+TGG - chr5_4:27080291-27080310 Msa0846640:five_prime_UTR 35.0%
AAAACGACGACGTATTGAAG+GGG - chr5_4:27077688-27077707 Msa0846640:three_prime_UTR 40.0%
!! AGAAGCACTGAAAATCCGTT+GGG - chr5_4:27077756-27077775 Msa0846640:three_prime_UTR 40.0%
GATAGCTTCGTATTTCCCAA+CGG + chr5_4:27077774-27077793 None:intergenic 40.0%
AAGATGTGGTTGGAAGAAGA+GGG + chr5_4:27077857-27077876 None:intergenic 40.0%
AAAGATGTGGTTGGAAGAAG+AGG + chr5_4:27077858-27077877 None:intergenic 40.0%
! CTTTGGAGGAAGAAAAGATG+TGG + chr5_4:27077871-27077890 None:intergenic 40.0%
! CACATCTTTTCTTCCTCCAA+AGG - chr5_4:27077869-27077888 Msa0846640:three_prime_UTR 40.0%
AAGGAACGATACGATACCTT+TGG + chr5_4:27077888-27077907 None:intergenic 40.0%
!!! GCAAATTAACGGTGCTGTTT+TGG - chr5_4:27077969-27077988 Msa0846640:three_prime_UTR 40.0%
GCACAAATACTCCTTGGATT+AGG + chr5_4:27078313-27078332 None:intergenic 40.0%
CCACTAATACTTTGGTCTAG+AGG + chr5_4:27079059-27079078 None:intergenic 40.0%
! CCTCTAGACCAAAGTATTAG+TGG - chr5_4:27079056-27079075 Msa0846640:intron 40.0%
!! TTCTCCAATTTCTCTAAGGC+GGG + chr5_4:27079150-27079169 None:intergenic 40.0%
AGCAACTGATCAGCATAGAA+TGG + chr5_4:27079193-27079212 None:intergenic 40.0%
TGCTGATCAGTTGCTAAAAG+AGG - chr5_4:27079198-27079217 Msa0846640:intron 40.0%
!! TTGTCATGGTGGAACGTTTT+GGG + chr5_4:27079496-27079515 None:intergenic 40.0%
ATTGCTTCGTACAGTTGTCA+TGG + chr5_4:27079510-27079529 None:intergenic 40.0%
! CTTTTCTTAGACACTGCTGA+TGG + chr5_4:27079683-27079702 None:intergenic 40.0%
AATCATCTTCAGACGTTGCT+TGG + chr5_4:27079723-27079742 None:intergenic 40.0%
TCGATGTGAAGTAAGTGATG+AGG - chr5_4:27079754-27079773 Msa0846640:intron 40.0%
GTCTCTGCAGATACAGATAT+TGG - chr5_4:27079860-27079879 Msa0846640:intron 40.0%
TCATCCACCACTTGATATTC+TGG + chr5_4:27079926-27079945 None:intergenic 40.0%
!! TATCAAGTGGTGGATGAAAC+TGG - chr5_4:27079929-27079948 Msa0846640:intron 40.0%
!! ATCAAGTGGTGGATGAAACT+GGG - chr5_4:27079930-27079949 Msa0846640:intron 40.0%
AAGGACACTGGAGATATTTC+AGG - chr5_4:27079974-27079993 Msa0846640:intron 40.0%
!! ATGTTGACTTCTTTGCCAGA+AGG - chr5_4:27080067-27080086 Msa0846640:intron 40.0%
! CAAATTGGCTTCATCGGTAA+GGG + chr5_4:27080105-27080124 None:intergenic 40.0%
AATTGAAGCTTCTGTTAGGG+TGG - chr5_4:27080147-27080166 Msa0846640:intron 40.0%
ATTGAAGCTTCTGTTAGGGT+GGG - chr5_4:27080148-27080167 Msa0846640:intron 40.0%
ACGTATTGAAGGGGTGATTG+AGG - chr5_4:27077697-27077716 Msa0846640:three_prime_UTR 45.0%
CGTATTGAAGGGGTGATTGA+GGG - chr5_4:27077698-27077717 Msa0846640:three_prime_UTR 45.0%
GTATTGAAGGGGTGATTGAG+GGG - chr5_4:27077699-27077718 Msa0846640:three_prime_UTR 45.0%
CTTCTGTTCACTGTTGTTGC+AGG + chr5_4:27077741-27077760 None:intergenic 45.0%
!! CAGAAGCACTGAAAATCCGT+TGG - chr5_4:27077755-27077774 Msa0846640:three_prime_UTR 45.0%
TGCAGTGACTCTAATGTCAC+CGG + chr5_4:27077811-27077830 None:intergenic 45.0%
GGAGGAAGAAAAGATGTGGT+TGG + chr5_4:27077867-27077886 None:intergenic 45.0%
GAACGATACGATACCTTTGG+AGG + chr5_4:27077885-27077904 None:intergenic 45.0%
TGAAGCAACAACTCAGACAC+CGG - chr5_4:27078179-27078198 Msa0846640:CDS 45.0%
ACTCAATACGTATCCGACAC+CGG - chr5_4:27078282-27078301 Msa0846640:CDS 45.0%
AGTTCCCGCCTTAGAGAAAT+TGG - chr5_4:27079143-27079162 Msa0846640:intron 45.0%
!! TGTCATGGTGGAACGTTTTG+GGG + chr5_4:27079495-27079514 None:intergenic 45.0%
!! GTTGTCATGGTGGAACGTTT+TGG + chr5_4:27079497-27079516 None:intergenic 45.0%
ACTGTACGAAGCAATATGCG+TGG - chr5_4:27079515-27079534 Msa0846640:intron 45.0%
!!! AAGCCTGTTTTTGCAGTCCT+TGG - chr5_4:27079545-27079564 Msa0846640:intron 45.0%
GGAGAAAGTTCTCAGCTTCT+TGG + chr5_4:27079601-27079620 None:intergenic 45.0%
CTAAGAAAAGCTCCGTTGCT+AGG - chr5_4:27079693-27079712 Msa0846640:intron 45.0%
TTGCTTGGCAATCCTAGCAA+CGG + chr5_4:27079708-27079727 None:intergenic 45.0%
! GCGTGCTCTATCAGATTTTG+TGG - chr5_4:27079805-27079824 Msa0846640:intron 45.0%
! GGGCACTGTAACAGAGTAAA+TGG + chr5_4:27079888-27079907 None:intergenic 45.0%
! CCAAATTGGCTTCATCGGTA+AGG + chr5_4:27080106-27080125 None:intergenic 45.0%
CCTTACCGATGAAGCCAATT+TGG - chr5_4:27080103-27080122 Msa0846640:intron 45.0%
! GCACTCCAAATTGGCTTCAT+CGG + chr5_4:27080111-27080130 None:intergenic 45.0%
!! TTAATATTAATTTATAGAAA+TGG + chr5_4:27078840-27078859 None:intergenic 5.0%
GGGTGATTGAGGGGCAAATA+GGG - chr5_4:27077708-27077727 Msa0846640:three_prime_UTR 50.0%
AATGTCAGCGTTCTGGTGTC+CGG + chr5_4:27078201-27078220 None:intergenic 50.0%
CTCAATACGTATCCGACACC+GGG - chr5_4:27078283-27078302 Msa0846640:CDS 50.0%
AATGGAGGGTCCTGCATATC+TGG - chr5_4:27079464-27079483 Msa0846640:intron 50.0%
TGGGGTGAATCCAGATATGC+AGG + chr5_4:27079477-27079496 None:intergenic 50.0%
GCTTCGTACAGTTGTCATGG+TGG + chr5_4:27079507-27079526 None:intergenic 50.0%
CCTCCAAGGACTGCAAAAAC+AGG + chr5_4:27079551-27079570 None:intergenic 50.0%
!!! CCTGTTTTTGCAGTCCTTGG+AGG - chr5_4:27079548-27079567 Msa0846640:intron 50.0%
ACTCTGTTACAGTGCCCGTA+CGG - chr5_4:27079891-27079910 Msa0846640:intron 50.0%
!! TTCTGGTTTAACCCGCCGTA+CGG + chr5_4:27079909-27079928 None:intergenic 50.0%
GGGTTTCAAACACTGCCTTC+TGG + chr5_4:27080085-27080104 None:intergenic 50.0%
GGGGTGATTGAGGGGCAAAT+AGG - chr5_4:27077707-27077726 Msa0846640:three_prime_UTR 55.0%
! GAAGAAGAGGGTGTGAGCGA+TGG + chr5_4:27077845-27077864 None:intergenic 55.0%
! CTCCTTGGATTAGGCTGTCC+CGG + chr5_4:27078304-27078323 None:intergenic 55.0%
! TCTGGTTTAACCCGCCGTAC+GGG + chr5_4:27079908-27079927 None:intergenic 55.0%
! AGAGGGTGTGAGCGATGGAG+TGG + chr5_4:27077840-27077859 None:intergenic 60.0%
GGATTAGGCTGTCCCGGTGT+CGG + chr5_4:27078298-27078317 None:intergenic 60.0%
CACCGGGACAGCCTAATCCA+AGG - chr5_4:27078299-27078318 Msa0846640:CDS 60.0%
CTGTTACAGTGCCCGTACGG+CGG - chr5_4:27079894-27079913 Msa0846640:intron 60.0%
TGTTACAGTGCCCGTACGGC+GGG - chr5_4:27079895-27079914 Msa0846640:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 27077688 27080364 27077688 ID=Msa0846640;Name=Msa0846640
chr5_4 mRNA 27077688 27080364 27077688 ID=Msa0846640-mRNA-1;Parent=Msa0846640;Name=Msa0846640-mRNA-1;_AED=0.06;_eAED=0.06;_QI=110|1|1|1|1|1|2|319|231
chr5_4 exon 27077688 27078609 27077688 ID=Msa0846640-mRNA-1:exon:10496;Parent=Msa0846640-mRNA-1
chr5_4 exon 27080162 27080364 27080162 ID=Msa0846640-mRNA-1:exon:10495;Parent=Msa0846640-mRNA-1
chr5_4 five_prime_UTR 27080255 27080364 27080255 ID=Msa0846640-mRNA-1:five_prime_utr;Parent=Msa0846640-mRNA-1
chr5_4 CDS 27080162 27080254 27080162 ID=Msa0846640-mRNA-1:cds;Parent=Msa0846640-mRNA-1
chr5_4 CDS 27078007 27078609 27078007 ID=Msa0846640-mRNA-1:cds;Parent=Msa0846640-mRNA-1
chr5_4 three_prime_UTR 27077688 27078006 27077688 ID=Msa0846640-mRNA-1:three_prime_utr;Parent=Msa0846640-mRNA-1
Gene Sequence

>Msa0846640

ATGACGATTTCCGGTGACATTAGAGTCACTGCAACTCTTCCACTCCATCGCTCACACCCTCTTCTTCCAACCACATCTTTTCTTCCTCCAAAGGTCGATTTTCATTGTTTCTTAAATGGAGGGTCCTGCATATCTGGATTCACCCCAAAACGTTCCACCATGACAACTGTACGAAGCAATATGCGTGGCAATCACAAGCCTGTTTTTGCAGTCCTTGGAGGTTCTAATTTTTCATCAAAGTCAGTTAACCAAGAAGCTGAGAACTTTCTCCTTGATGCTGTTAATATGAGTTTCTTTGAGCGTTTAAATTTGGCTTGGAAGATTGTTTTCCCATCAGCAGTGTCTAAGAAAAGCTCCGTTGCTAGGATTGCCAAGCAACGTCTGAAGATGATTTTGTTCTCTGATCGATGTGAAGTAAGTGATGAGGCAAAGCAAAAAATAGTTAGCAACATTGTGCGTGCTCTATCAGATTTTGTGGAAATAGAATCACAAGATAAAGTTCAGTTGAGTGTCTCTGCAGATACAGATATTGGAACCATTTACTCTGTTACAGTGCCCGTACGGCGGGTTAAACCAGAATATCAAGTGGTGGATGAAACTGGGACAATAACAAATATTGAGTATAAGGACACTGGAGATATTTCAGGTTCTGTCGATGTTAGATTTGATTTCTATGTTCCGGATGAAATGTCTTGA

Protein sequence

>Msa0846640

MTISGDIRVTATLPLHRSHPLLPTTSFLPPKVDFHCFLNGGSCISGFTPKRSTMTTVRSNMRGNHKPVFAVLGGSNFSSKSVNQEAENFLLDAVNMSFFERLNLAWKIVFPSAVSKKSSVARIAKQRLKMILFSDRCEVSDEAKQKIVSNIVRALSDFVEIESQDKVQLSVSADTDIGTIYSVTVPVRRVKPEYQVVDETGTITNIEYKDTGDISGSVDVRFDFYVPDEMS*