AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1106560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1106560 MtrunA17_Chr7g0238901 95.482 332 12 1 1 332 1 329 0.0 649
Msa1106560 MtrunA17_Chr4g0009941 78.824 255 54 0 78 332 1 255 1.33e-154 433
Msa1106560 MtrunA17_Chr8g0338051 30.702 228 120 8 119 325 108 318 1.42e-22 96.3
Msa1106560 MtrunA17_Chr4g0034391 35.417 96 58 2 184 275 183 278 6.02e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1106560 AT2G37660.1 71.111 315 87 2 18 332 15 325 4.22e-162 455
Msa1106560 AT5G02240.1 77.419 248 56 0 85 332 6 253 7.71e-143 404
Msa1106560 AT4G31530.1 31.105 344 189 11 4 325 1 318 1.67e-23 99.4
Msa1106560 AT4G31530.2 30.887 327 179 10 4 309 1 301 4.17e-21 92.8
Msa1106560 AT2G34460.1 31.439 264 141 11 79 328 40 277 8.75e-19 85.5
Msa1106560 AT3G18890.1 34.286 105 65 2 175 275 174 278 1.44e-11 65.9

Find 90 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCCACCAAAGAATATTTA+TGG 0.161293 7_3:-46576404 None:intergenic
TTCACCAACAAAGGACTTTA+AGG 0.161530 7_3:+46579787 Msa1106560:CDS
TTTATTGTTGTTTCTGATTA+TGG 0.163650 7_3:-46576211 None:intergenic
TAACATCATTGTTATTATTA+AGG 0.222978 7_3:-46576296 None:intergenic
AACTACTTTGATGGTTATTA+TGG 0.226847 7_3:+46576326 Msa1106560:exon
TTCTTGCTATTCTACTTCTT+TGG 0.230025 7_3:+46576470 Msa1106560:CDS
CCTTCCAAGTATATGTTTAC+TGG 0.240701 7_3:+46580144 Msa1106560:intron
AGCAAATTTACATTATGTTT+TGG 0.267641 7_3:+46579926 Msa1106560:three_prime_UTR
TGCTAGTGTAGCACTAAAAT+AGG 0.279604 7_3:-46576175 None:intergenic
AATTGTGTTGGTAGGGTCTA+TGG 0.285784 7_3:+46578922 Msa1106560:CDS
AAGAGTACTGTGCTTGTTAC+TGG 0.291951 7_3:+46576582 Msa1106560:CDS
TAACCATCCTTTGAACAGTT+TGG 0.300060 7_3:+46578958 Msa1106560:CDS
CAGTTTCTTATGCATCATTA+AGG 0.304937 7_3:+46576442 Msa1106560:CDS
TCAATTCAAGGCATTTGATT+TGG 0.316577 7_3:+46579742 Msa1106560:CDS
CCAATGCCATAAATATTCTT+TGG 0.317445 7_3:+46576398 Msa1106560:CDS
GAGCCTAATAGTACCTGTTC+AGG 0.328614 7_3:-46578504 None:intergenic
AACCATCCTTTGAACAGTTT+GGG 0.329707 7_3:+46578959 Msa1106560:CDS
GAAGAAAGCAAGCAGAAAAT+TGG 0.340025 7_3:+46578309 Msa1106560:CDS
GCATCTATACCTTGAATTGC+AGG 0.345607 7_3:-46578384 None:intergenic
GTATTCCGTATACGATTATA+AGG 0.357893 7_3:+46579137 Msa1106560:CDS
AAGAAAGGCTGAACAATATC+TGG 0.358271 7_3:+46579105 Msa1106560:CDS
TTTGGGTGATGGGAATATAT+TGG 0.358986 7_3:+46578976 Msa1106560:CDS
CTTAATGATGCATAAGAAAC+TGG 0.363992 7_3:-46576441 None:intergenic
TACTGTGTGAACTACTTTGA+TGG 0.375024 7_3:+46576317 Msa1106560:exon
ACATGAACAGCCAAGGCTTC+AGG 0.375315 7_3:+46578890 Msa1106560:intron
CTTTGAACAGTTTGGGTGAT+GGG 0.397272 7_3:+46578966 Msa1106560:CDS
GGTATCCGAGAACTCGTCAT+AGG 0.398344 7_3:+46579311 Msa1106560:CDS
CCAAAGAATATTTATGGCAT+TGG 0.399375 7_3:-46576398 None:intergenic
CCTTCCCTATGACGAGTTCT+CGG 0.402259 7_3:-46579316 None:intergenic
GTGTACCTTATAATCGTATA+CGG 0.404154 7_3:-46579142 None:intergenic
AAAGCCTTAAAGTCCTTTGT+TGG 0.407444 7_3:-46579791 None:intergenic
TTGCTTTACTCCTGAAGCCT+TGG 0.418437 7_3:-46578900 None:intergenic
GTTGGTGAACCTGTTCCCTC+AGG 0.424555 7_3:-46579773 None:intergenic
CCTCTTGCGACGTATTCGTT+TGG 0.428419 7_3:-46578273 None:intergenic
ATTGTAGGTTTGGAAAAGAA+AGG 0.432611 7_3:+46579090 Msa1106560:intron
TGTTGCAGAAGTCTGTATTC+AGG 0.433542 7_3:+46579385 Msa1106560:CDS
CCTTGAGTTGGATCAAATCC+AGG 0.435919 7_3:-46578444 None:intergenic
GAATATTTATGGCATTGGTT+AGG 0.435928 7_3:-46576393 None:intergenic
TTAGTGGTACTCCACTTGTA+AGG 0.438785 7_3:-46578416 None:intergenic
GCATCAAAACCTGAGGGAAC+AGG 0.441936 7_3:+46579764 Msa1106560:CDS
TCAAATCCAGGTTTCATTAG+TGG 0.442032 7_3:-46578432 None:intergenic
ATGATTTAAGATAAGGTAAA+GGG 0.446346 7_3:+46576103 None:intergenic
ACTGGTGCTGCTGGTCGTAC+AGG 0.446496 7_3:+46576600 Msa1106560:CDS
AGTCTTGCTCCTGCAATTCA+AGG 0.454453 7_3:+46578375 Msa1106560:CDS
ATTGTGTTGGTAGGGTCTAT+GGG 0.455246 7_3:+46578923 Msa1106560:CDS
AAGTGTTGTTGTTGTTGCTA+TGG 0.461250 7_3:+46576548 Msa1106560:CDS
AATTGCAGGAGCAAGACTTT+CGG 0.465966 7_3:-46578370 None:intergenic
GCTAGTGTAGCACTAAAATA+GGG 0.475958 7_3:-46576174 None:intergenic
CCTTTGAACAGTTTGGGTGA+TGG 0.492670 7_3:+46578965 Msa1106560:CDS
GTGCTTGTTACTGGTGCTGC+TGG 0.493811 7_3:+46576591 Msa1106560:CDS
GTAAAGCAAATTGTGTTGGT+AGG 0.500676 7_3:+46578914 Msa1106560:CDS
ATAAATATTCTTTGGTGGCA+AGG 0.501043 7_3:+46576406 Msa1106560:CDS
AGATGGTGCATACCCTGAAC+AGG 0.502612 7_3:+46578491 Msa1106560:CDS
CTAAATTGAGTCAGGGCTGG+TGG 0.503589 7_3:+46579269 Msa1106560:intron
AACTGTTCAAAGGATGGTTA+AGG 0.503693 7_3:-46578955 None:intergenic
GATGATTTAAGATAAGGTAA+AGG 0.513839 7_3:+46576102 None:intergenic
ACGTGTGATGATTTAAGATA+AGG 0.514486 7_3:+46576096 None:intergenic
TCTAGCTATGGTTCTGATGT+CGG 0.517693 7_3:-46579357 None:intergenic
ATGCCATAAATATTCTTTGG+TGG 0.518447 7_3:+46576401 Msa1106560:CDS
ATACAGACTTCTGCAACATC+AGG 0.535402 7_3:-46579380 None:intergenic
TTCACACCCTCAAAACTCCT+TGG 0.535434 7_3:-46576507 None:intergenic
GTTTACTAGGTTGACTGGAT+CGG 0.535946 7_3:+46578760 Msa1106560:intron
GAACAATATCTGGCTGACTC+TGG 0.541428 7_3:+46579115 Msa1106560:CDS
CCAAACGAATACGTCGCAAG+AGG 0.554987 7_3:+46578273 Msa1106560:CDS
AGGAGTAAAGCAAATTGTGT+TGG 0.558759 7_3:+46578910 Msa1106560:CDS
TAAAGCAAATTGTGTTGGTA+GGG 0.564893 7_3:+46578915 Msa1106560:CDS
AGCCTAATAGTACCTGTTCA+GGG 0.567506 7_3:-46578503 None:intergenic
ACCATCTTCAAAATAGAACT+CGG 0.567981 7_3:-46578475 None:intergenic
CACCCAAACTGTTCAAAGGA+TGG 0.577560 7_3:-46578961 None:intergenic
TAGTGCTACACTAGCATCAG+AGG 0.577828 7_3:+46576182 Msa1106560:five_prime_UTR
ATTCCTTGCTGCAAGTGAGT+AGG 0.581748 7_3:+46580239 Msa1106560:three_prime_UTR
TGCAACATCAGGTCTAGCTA+TGG 0.582809 7_3:-46579369 None:intergenic
CCTGGATTTGATCCAACTCA+AGG 0.583933 7_3:+46578444 Msa1106560:CDS
GTATCCGAGAACTCGTCATA+GGG 0.593785 7_3:+46579312 Msa1106560:CDS
GCTCTCATAATCCTTACAAG+TGG 0.596395 7_3:+46578405 Msa1106560:CDS
CCATCACCCAAACTGTTCAA+AGG 0.597247 7_3:-46578965 None:intergenic
TGGTTTCACTTGCATTACCA+AGG 0.600082 7_3:+46576490 Msa1106560:CDS
TGATTTGGCATCAAAACCTG+AGG 0.602928 7_3:+46579757 Msa1106560:CDS
GGGAACAGGTTCACCAACAA+AGG 0.603238 7_3:+46579778 Msa1106560:CDS
GGAGTACCACTAATGAAACC+TGG 0.613736 7_3:+46578426 Msa1106560:CDS
CCATCTTCAAAATAGAACTC+GGG 0.615847 7_3:-46578474 None:intergenic
TGGTGGTTTGCAAGACAAAG+AGG 0.615970 7_3:+46579286 Msa1106560:CDS
AATGTGGTAGCAGAAACAAA+AGG 0.616882 7_3:-46576366 None:intergenic
CCGAGAACTCGTCATAGGGA+AGG 0.618903 7_3:+46579316 Msa1106560:CDS
GATTTGGCATCAAAACCTGA+GGG 0.627143 7_3:+46579758 Msa1106560:CDS
CAAACGAATACGTCGCAAGA+GGG 0.627898 7_3:+46578274 Msa1106560:CDS
GGTGGTTTGCAAGACAAAGA+GGG 0.640822 7_3:+46579287 Msa1106560:CDS
ATGCCTACTCACTTGCAGCA+AGG 0.642804 7_3:-46580242 None:intergenic
GTGTTGGTAGGGTCTATGGG+TGG 0.700220 7_3:+46578926 Msa1106560:CDS
GGTTTGCAAGACAAAGAGGG+AGG 0.721811 7_3:+46579290 Msa1106560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACATTACATTTTAAAATTT+GGG - chr7_3:46577484-46577503 None:intergenic 10.0%
!!! ATTATGATATTTTTATTTCA+AGG + chr7_3:46578080-46578099 Msa1106560:intron 10.0%
!! TACTAAAATATGAATAAAAA+AGG - chr7_3:46578735-46578754 None:intergenic 10.0%
!!! TAACATCATTGTTATTATTA+AGG - chr7_3:46576299-46576318 None:intergenic 15.0%
!!! AGTAATATGAGTTTTAATTA+AGG + chr7_3:46576774-46576793 Msa1106560:intron 15.0%
!! TTAAAATTATTTATGAAGCA+CGG + chr7_3:46576816-46576835 Msa1106560:intron 15.0%
!! AATTAAGATTGTTAAAATTG+AGG + chr7_3:46577021-46577040 Msa1106560:intron 15.0%
!!! TTAAAATTGAGGTTTAATTT+AGG + chr7_3:46577032-46577051 Msa1106560:intron 15.0%
!! ATGATACTATCTTAAAATTT+AGG - chr7_3:46577274-46577293 None:intergenic 15.0%
!!! CTACATTACATTTTAAAATT+TGG - chr7_3:46577485-46577504 None:intergenic 15.0%
!!! CAAATTTTAAAATGTAATGT+AGG + chr7_3:46577483-46577502 Msa1106560:intron 15.0%
!! TTAAAAAAAAAAAAACGTCA+AGG + chr7_3:46577587-46577606 Msa1106560:intron 15.0%
!!! TTTGAATTTAGTTTATAAGT+AGG + chr7_3:46577892-46577911 Msa1106560:intron 15.0%
!! TTTATAAAAAGTTAAAAGAG+CGG + chr7_3:46578250-46578269 Msa1106560:CDS 15.0%
!!! TTTTAGTAATTTTGTTTACT+AGG + chr7_3:46578747-46578766 Msa1106560:intron 15.0%
!!! TTTATTGTTGTTTCTGATTA+TGG - chr7_3:46576214-46576233 None:intergenic 20.0%
!! AAATATAGGAATATAAATGC+AGG + chr7_3:46576733-46576752 Msa1106560:intron 20.0%
!! AATATAGGAATATAAATGCA+GGG + chr7_3:46576734-46576753 Msa1106560:intron 20.0%
!! TACATATTCAATATAATGCT+GGG - chr7_3:46576999-46577018 None:intergenic 20.0%
!! TTACATATTCAATATAATGC+TGG - chr7_3:46577000-46577019 None:intergenic 20.0%
!!! TTTAATTTAGGTTTAGTGAA+TGG + chr7_3:46577044-46577063 Msa1106560:intron 20.0%
!! TAAAATTAAGATTTCTGACT+TGG + chr7_3:46577075-46577094 Msa1106560:intron 20.0%
!! AAAATTAAGATTTCTGACTT+GGG + chr7_3:46577076-46577095 Msa1106560:intron 20.0%
!!! AAAATTTCTGATTTTTTGTG+TGG + chr7_3:46577129-46577148 Msa1106560:intron 20.0%
!!! AAATTTCTGATTTTTTGTGT+GGG + chr7_3:46577130-46577149 Msa1106560:intron 20.0%
!! TACTATCTTAAAATTTAGGT+TGG - chr7_3:46577270-46577289 None:intergenic 20.0%
!! GTTAGAAAATGAGTTTATAA+TGG + chr7_3:46577407-46577426 Msa1106560:intron 20.0%
!! TAGCAGTAAATTTACAAAAT+TGG + chr7_3:46577765-46577784 Msa1106560:intron 20.0%
!! CTTCAACTTTATAATATAGA+TGG - chr7_3:46578128-46578147 None:intergenic 20.0%
!!! AATTGTTTTCATAAGTTTTC+CGG + chr7_3:46578543-46578562 Msa1106560:intron 20.0%
!! TAAGCAACAATATAAGAAAA+TGG - chr7_3:46579660-46579679 None:intergenic 20.0%
!! TGTTAAACAAATTGAATCAA+GGG - chr7_3:46579701-46579720 None:intergenic 20.0%
!!! AGCAAATTTACATTATGTTT+TGG + chr7_3:46579926-46579945 Msa1106560:three_prime_UTR 20.0%
!! AACTACTTTGATGGTTATTA+TGG + chr7_3:46576326-46576345 Msa1106560:exon 25.0%
! ACTGAAATGTGTGAAAATAT+AGG + chr7_3:46576719-46576738 Msa1106560:intron 25.0%
! TTCAGTGTAATTATATGTGT+CGG + chr7_3:46576915-46576934 Msa1106560:intron 25.0%
!! AAATTAAGATTTCTGACTTG+GGG + chr7_3:46577077-46577096 Msa1106560:intron 25.0%
! CATGAAAATGAGTTTATAGT+GGG + chr7_3:46577210-46577229 Msa1106560:intron 25.0%
! GTCTCATATTAGATAAAATC+AGG + chr7_3:46577385-46577404 Msa1106560:intron 25.0%
!! AAAAGATCTTTTACTATGCA+AGG + chr7_3:46577430-46577449 Msa1106560:intron 25.0%
!!! ACATTTTAAAATTTGGGTTG+AGG - chr7_3:46577478-46577497 None:intergenic 25.0%
!! AAAAAAAAACGTCAAGGTTT+TGG + chr7_3:46577593-46577612 Msa1106560:intron 25.0%
! TGATGAAAAATTGTTCAAAC+CGG - chr7_3:46577925-46577944 None:intergenic 25.0%
! GGAAAACTTATGAAAACAAT+TGG - chr7_3:46578544-46578563 None:intergenic 25.0%
!! ATTGTTTTCATAAGTTTTCC+GGG + chr7_3:46578544-46578563 Msa1106560:intron 25.0%
! CTTATGGAAAATGTATTATG+CGG - chr7_3:46578688-46578707 None:intergenic 25.0%
!! TGTTTCGTTCTACAAAATTT+TGG + chr7_3:46579013-46579032 Msa1106560:intron 25.0%
! TTATGAGAAAAATGCATGTT+TGG + chr7_3:46579044-46579063 Msa1106560:intron 25.0%
!!! GTATGATTCCTACTTTTATT+TGG + chr7_3:46579192-46579211 Msa1106560:intron 25.0%
! CTGACTCAATTTAGAAAAAT+GGG - chr7_3:46579263-46579282 None:intergenic 25.0%
!! CATTTTTCTAAATTGAGTCA+GGG + chr7_3:46579262-46579281 Msa1106560:intron 25.0%
!!! TACGAAGTTTTGTCAAATAA+TGG - chr7_3:46579512-46579531 None:intergenic 25.0%
! CTATAACAATGTTATATTGC+TGG - chr7_3:46579588-46579607 None:intergenic 25.0%
! CTGTTAAACAAATTGAATCA+AGG - chr7_3:46579702-46579721 None:intergenic 25.0%
!! CTTGATTCAATTTGTTTAAC+AGG + chr7_3:46579700-46579719 Msa1106560:intron 25.0%
!!! AAGCACTAATAGTTGTTTTA+TGG - chr7_3:46579901-46579920 None:intergenic 25.0%
! AACATCTAGATTCATATACT+TGG - chr7_3:46580091-46580110 None:intergenic 25.0%
!! TTATCAGTAGTGTATTTTCT+AGG - chr7_3:46580193-46580212 None:intergenic 25.0%
!! GAATATTTATGGCATTGGTT+AGG - chr7_3:46576396-46576415 None:intergenic 30.0%
CCAAAGAATATTTATGGCAT+TGG - chr7_3:46576401-46576420 None:intergenic 30.0%
CCAATGCCATAAATATTCTT+TGG + chr7_3:46576398-46576417 Msa1106560:CDS 30.0%
ATGCCATAAATATTCTTTGG+TGG + chr7_3:46576401-46576420 Msa1106560:CDS 30.0%
TTGCCACCAAAGAATATTTA+TGG - chr7_3:46576407-46576426 None:intergenic 30.0%
! ATAAATATTCTTTGGTGGCA+AGG + chr7_3:46576406-46576425 Msa1106560:CDS 30.0%
CTTAATGATGCATAAGAAAC+TGG - chr7_3:46576444-46576463 None:intergenic 30.0%
CAGTTTCTTATGCATCATTA+AGG + chr7_3:46576442-46576461 Msa1106560:CDS 30.0%
!! TTCTTGCTATTCTACTTCTT+TGG + chr7_3:46576470-46576489 Msa1106560:CDS 30.0%
! AGAGAGAGAGAAAGAATTTT+TGG + chr7_3:46576649-46576668 Msa1106560:intron 30.0%
!! AATTAAGATTTCTGACTTGG+GGG + chr7_3:46577078-46577097 Msa1106560:intron 30.0%
TAAGATTCTCACATGAGATT+AGG + chr7_3:46577187-46577206 Msa1106560:intron 30.0%
GCATGAAAATGAGTTTATAG+TGG + chr7_3:46577209-46577228 Msa1106560:intron 30.0%
GCTTCCTAAAACAAAAACTT+AGG + chr7_3:46577530-46577549 Msa1106560:intron 30.0%
!!! TACGCCTAAGTTTTTGTTTT+AGG - chr7_3:46577537-46577556 None:intergenic 30.0%
TCATTAACAACAAATGCAGT+CGG - chr7_3:46577711-46577730 None:intergenic 30.0%
ATAAGAATCTACACTTACAG+AGG + chr7_3:46577835-46577854 Msa1106560:intron 30.0%
!!! GTTTTTGGTTGCAATAAAGA+AGG + chr7_3:46577857-46577876 Msa1106560:intron 30.0%
TTTATAAGTAGGATTCAGAC+CGG + chr7_3:46577903-46577922 Msa1106560:intron 30.0%
CAAAGGTTGGATCATATAAT+CGG + chr7_3:46577968-46577987 Msa1106560:intron 30.0%
AAAGGTTGGATCATATAATC+GGG + chr7_3:46577969-46577988 Msa1106560:intron 30.0%
ATGAATCATAACCTACCTTT+CGG - chr7_3:46578019-46578038 None:intergenic 30.0%
GAAGAAAGATTCATAGAATG+TGG - chr7_3:46578049-46578068 None:intergenic 30.0%
! TTTAATTGCTGTTACTTCTC+AGG + chr7_3:46578219-46578238 Msa1106560:intron 30.0%
ACCATCTTCAAAATAGAACT+CGG - chr7_3:46578478-46578497 None:intergenic 30.0%
GTAAACTTAAGCATGACTTA+TGG - chr7_3:46578704-46578723 None:intergenic 30.0%
!! ATTTTGTTTACTAGGTTGAC+TGG + chr7_3:46578755-46578774 Msa1106560:intron 30.0%
CAGAAAAATCAAATAGATGC+TGG + chr7_3:46578784-46578803 Msa1106560:CDS 30.0%
GATCTATGATTATGTCGAAA+AGG - chr7_3:46578822-46578841 None:intergenic 30.0%
! TAAAGCAAATTGTGTTGGTA+GGG + chr7_3:46578915-46578934 Msa1106560:CDS 30.0%
!!! GTTGTTTTCGTATTGATTGT+AGG + chr7_3:46579075-46579094 Msa1106560:intron 30.0%
!! TTTCGTATTGATTGTAGGTT+TGG + chr7_3:46579080-46579099 Msa1106560:intron 30.0%
ATTGTAGGTTTGGAAAAGAA+AGG + chr7_3:46579090-46579109 Msa1106560:intron 30.0%
GTATTCCGTATACGATTATA+AGG + chr7_3:46579137-46579156 Msa1106560:CDS 30.0%
GTGTACCTTATAATCGTATA+CGG - chr7_3:46579145-46579164 None:intergenic 30.0%
TATACGATTATAAGGTACAC+CGG + chr7_3:46579145-46579164 Msa1106560:intron 30.0%
TTGTTCAGTGTAATAGAAAC+CGG - chr7_3:46579167-46579186 None:intergenic 30.0%
GTTAGATGCCAAATAAAAGT+AGG - chr7_3:46579203-46579222 None:intergenic 30.0%
!! ACTTTTATTTGGCATCTAAC+TGG + chr7_3:46579203-46579222 Msa1106560:intron 30.0%
CCTGACTCAATTTAGAAAAA+TGG - chr7_3:46579264-46579283 None:intergenic 30.0%
!! CCATTTTTCTAAATTGAGTC+AGG + chr7_3:46579261-46579280 Msa1106560:intron 30.0%
!! AAAATGGTGGAATTGTGTTT+TGG - chr7_3:46579644-46579663 None:intergenic 30.0%
GCAACAATATAAGAAAATGG+TGG - chr7_3:46579657-46579676 None:intergenic 30.0%
! TGTTGCTTAACTATGTGATT+TGG + chr7_3:46579671-46579690 Msa1106560:intron 30.0%
! TTAACAGGCACTAAATTTTG+AGG + chr7_3:46579715-46579734 Msa1106560:intron 30.0%
! TCAATTCAAGGCATTTGATT+TGG + chr7_3:46579742-46579761 Msa1106560:CDS 30.0%
TTTCTCAAGTTTACAGAACT+GGG - chr7_3:46579994-46580013 None:intergenic 30.0%
TCTAGATTCATATACTTGGA+AGG - chr7_3:46580087-46580106 None:intergenic 30.0%
CAAACCAGTAAACATATACT+TGG - chr7_3:46580151-46580170 None:intergenic 30.0%
GCTAGTGTAGCACTAAAATA+GGG - chr7_3:46576177-46576196 None:intergenic 35.0%
TGCTAGTGTAGCACTAAAAT+AGG - chr7_3:46576178-46576197 None:intergenic 35.0%
TACTGTGTGAACTACTTTGA+TGG + chr7_3:46576317-46576336 Msa1106560:exon 35.0%
AATGTGGTAGCAGAAACAAA+AGG - chr7_3:46576369-46576388 None:intergenic 35.0%
!! GCATTGGTTAGGAAAAAATG+TGG - chr7_3:46576385-46576404 None:intergenic 35.0%
! AAGTGTTGTTGTTGTTGCTA+TGG + chr7_3:46576548-46576567 Msa1106560:CDS 35.0%
! GTAATTATATGTGTCGGTGT+CGG + chr7_3:46576921-46576940 Msa1106560:intron 35.0%
TGTTAGACACCACACAAAAT+CGG - chr7_3:46576950-46576969 None:intergenic 35.0%
!! ATTAAGATTTCTGACTTGGG+GGG + chr7_3:46577079-46577098 Msa1106560:intron 35.0%
! GAAAATGAGTTTATAGTGGG+AGG + chr7_3:46577213-46577232 Msa1106560:intron 35.0%
!! TCATGCTCTAGATGTTTTCT+CGG + chr7_3:46577341-46577360 Msa1106560:intron 35.0%
! ACTATGCAAGGTGATTTTGT+TGG + chr7_3:46577442-46577461 Msa1106560:intron 35.0%
! CTATGCAAGGTGATTTTGTT+GGG + chr7_3:46577443-46577462 Msa1106560:intron 35.0%
!!! CAAGGTTTTGGATATCTTTG+TGG + chr7_3:46577605-46577624 Msa1106560:intron 35.0%
TTGGTTTAGTACTCAGCTTT+CGG + chr7_3:46577784-46577803 Msa1106560:intron 35.0%
TAGCATACATTTCCAATTGG+AGG - chr7_3:46577810-46577829 None:intergenic 35.0%
CAGTAGCATACATTTCCAAT+TGG - chr7_3:46577813-46577832 None:intergenic 35.0%
! TCTACACTTACAGAGGTTTT+TGG + chr7_3:46577842-46577861 Msa1106560:intron 35.0%
!! CTTTGAAACTACACAGATCT+TGG - chr7_3:46577953-46577972 None:intergenic 35.0%
CAAGATCTGTGTAGTTTCAA+AGG + chr7_3:46577951-46577970 Msa1106560:intron 35.0%
ATCTGTGTAGTTTCAAAGGT+TGG + chr7_3:46577955-46577974 Msa1106560:intron 35.0%
TTCTTAGTAACTTACCCGAA+AGG + chr7_3:46578001-46578020 Msa1106560:intron 35.0%
TGAATCATAACCTACCTTTC+GGG - chr7_3:46578018-46578037 None:intergenic 35.0%
GAAGAAAGCAAGCAGAAAAT+TGG + chr7_3:46578309-46578328 Msa1106560:CDS 35.0%
!! GCTGCAGATGATGTTTTTAT+CGG + chr7_3:46578333-46578352 Msa1106560:CDS 35.0%
TCAAATCCAGGTTTCATTAG+TGG - chr7_3:46578435-46578454 None:intergenic 35.0%
CCATCTTCAAAATAGAACTC+GGG - chr7_3:46578477-46578496 None:intergenic 35.0%
AAATGTATTATGCGGCTGTT+TGG - chr7_3:46578680-46578699 None:intergenic 35.0%
TTTATGTACATGAACAGCCA+AGG + chr7_3:46578883-46578902 Msa1106560:intron 35.0%
AGGAGTAAAGCAAATTGTGT+TGG + chr7_3:46578910-46578929 Msa1106560:CDS 35.0%
! GTAAAGCAAATTGTGTTGGT+AGG + chr7_3:46578914-46578933 Msa1106560:CDS 35.0%
AACTGTTCAAAGGATGGTTA+AGG - chr7_3:46578958-46578977 None:intergenic 35.0%
TAACCATCCTTTGAACAGTT+TGG + chr7_3:46578958-46578977 Msa1106560:CDS 35.0%
AACCATCCTTTGAACAGTTT+GGG + chr7_3:46578959-46578978 Msa1106560:CDS 35.0%
!! TTTGGGTGATGGGAATATAT+TGG + chr7_3:46578976-46578995 Msa1106560:CDS 35.0%
AAGAAAGGCTGAACAATATC+TGG + chr7_3:46579105-46579124 Msa1106560:CDS 35.0%
! TAGATGCTATTTGACAAACC+TGG + chr7_3:46579605-46579624 Msa1106560:intron 35.0%
TTCACCAACAAAGGACTTTA+AGG + chr7_3:46579787-46579806 Msa1106560:CDS 35.0%
AAAGCCTTAAAGTCCTTTGT+TGG - chr7_3:46579794-46579813 None:intergenic 35.0%
TCAAAAACGAGTAGTGATCT+GGG - chr7_3:46579822-46579841 None:intergenic 35.0%
ATCAAAAACGAGTAGTGATC+TGG - chr7_3:46579823-46579842 None:intergenic 35.0%
GTTTCTCAAGTTTACAGAAC+TGG - chr7_3:46579995-46580014 None:intergenic 35.0%
CCAGTAAACATATACTTGGA+AGG - chr7_3:46580147-46580166 None:intergenic 35.0%
CCTTCCAAGTATATGTTTAC+TGG + chr7_3:46580144-46580163 Msa1106560:intron 35.0%
TGGTTTCACTTGCATTACCA+AGG + chr7_3:46576490-46576509 Msa1106560:CDS 40.0%
! TGCATTACCAAGGAGTTTTG+AGG + chr7_3:46576500-46576519 Msa1106560:CDS 40.0%
!! GCATTACCAAGGAGTTTTGA+GGG + chr7_3:46576501-46576520 Msa1106560:CDS 40.0%
!! AAGAGTACTGTGCTTGTTAC+TGG + chr7_3:46576582-46576601 Msa1106560:CDS 40.0%
GCAGGGTTTGTAGACTTTAT+TGG + chr7_3:46576751-46576770 Msa1106560:intron 40.0%
! TTTTGTGTGGTGTCTAACAC+AGG + chr7_3:46576951-46576970 Msa1106560:intron 40.0%
! TTATAGTGGGAGGAATGTCT+CGG + chr7_3:46577223-46577242 Msa1106560:intron 40.0%
!! CATGCTCTAGATGTTTTCTC+GGG + chr7_3:46577342-46577361 Msa1106560:intron 40.0%
AGACGAACGATGTAAATGCA+GGG + chr7_3:46577562-46577581 Msa1106560:intron 40.0%
TAGTAACTTACCCGAAAGGT+AGG + chr7_3:46578005-46578024 Msa1106560:intron 40.0%
GGCTCAAAAAATTCTACGTC+TGG + chr7_3:46578101-46578120 Msa1106560:intron 40.0%
AATTGCAGGAGCAAGACTTT+CGG - chr7_3:46578373-46578392 None:intergenic 40.0%
GCATCTATACCTTGAATTGC+AGG - chr7_3:46578387-46578406 None:intergenic 40.0%
GCTCTCATAATCCTTACAAG+TGG + chr7_3:46578405-46578424 Msa1106560:CDS 40.0%
TTAGTGGTACTCCACTTGTA+AGG - chr7_3:46578419-46578438 None:intergenic 40.0%
!! CCCGAGTTCTATTTTGAAGA+TGG + chr7_3:46578474-46578493 Msa1106560:CDS 40.0%
TACCCTGAACAGGTACTATT+AGG + chr7_3:46578501-46578520 Msa1106560:intron 40.0%
AGCCTAATAGTACCTGTTCA+GGG - chr7_3:46578506-46578525 None:intergenic 40.0%
AGGTACTATTAGGCTCTGTT+TGG + chr7_3:46578511-46578530 Msa1106560:intron 40.0%
CTAATTTCGATAAGCTCTCC+CGG - chr7_3:46578565-46578584 None:intergenic 40.0%
AACAGTCACAAGTGCTTATG+TGG + chr7_3:46578635-46578654 Msa1106560:intron 40.0%
! GTTTACTAGGTTGACTGGAT+CGG + chr7_3:46578760-46578779 Msa1106560:intron 40.0%
! AATTGTGTTGGTAGGGTCTA+TGG + chr7_3:46578922-46578941 Msa1106560:CDS 40.0%
! ATTGTGTTGGTAGGGTCTAT+GGG + chr7_3:46578923-46578942 Msa1106560:CDS 40.0%
CTTTGAACAGTTTGGGTGAT+GGG + chr7_3:46578966-46578985 Msa1106560:CDS 40.0%
TTTCTAAATTGAGTCAGGGC+TGG + chr7_3:46579266-46579285 Msa1106560:intron 40.0%
!! TCTAGCTATGGTTCTGATGT+CGG - chr7_3:46579360-46579379 None:intergenic 40.0%
ATACAGACTTCTGCAACATC+AGG - chr7_3:46579383-46579402 None:intergenic 40.0%
TGTTGCAGAAGTCTGTATTC+AGG + chr7_3:46579385-46579404 Msa1106560:CDS 40.0%
! GGTAATTAGCGGTTTGTTCA+AGG + chr7_3:46579476-46579495 Msa1106560:intron 40.0%
TTTGGTAGAGATAAAGAGCC+AGG - chr7_3:46579626-46579645 None:intergenic 40.0%
!! ACAGGCACTAAATTTTGAGG+AGG + chr7_3:46579718-46579737 Msa1106560:intron 40.0%
!! TTTTGAGGAGGCTCAATTCA+AGG + chr7_3:46579730-46579749 Msa1106560:CDS 40.0%
! TGATTTGGCATCAAAACCTG+AGG + chr7_3:46579757-46579776 Msa1106560:CDS 40.0%
GATTTGGCATCAAAACCTGA+GGG + chr7_3:46579758-46579777 Msa1106560:CDS 40.0%
TAGTGCTACACTAGCATCAG+AGG + chr7_3:46576182-46576201 Msa1106560:five_prime_UTR 45.0%
TTCACACCCTCAAAACTCCT+TGG - chr7_3:46576510-46576529 None:intergenic 45.0%
!!! AGTTTTGAGGGTGTGAAGAG+AGG + chr7_3:46576513-46576532 Msa1106560:CDS 45.0%
CATGAACACCAGACATGACA+CGG + chr7_3:46576846-46576865 Msa1106560:intron 45.0%
TATAATGCTGGGACACTCCT+CGG - chr7_3:46576988-46577007 None:intergenic 45.0%
!! GAGGAATGTCTCGGTTTTGT+AGG + chr7_3:46577232-46577251 Msa1106560:intron 45.0%
TAACCTATCCCAGATCCATC+AGG + chr7_3:46577293-46577312 Msa1106560:intron 45.0%
AACCTATCCCAGATCCATCA+GGG + chr7_3:46577294-46577313 Msa1106560:intron 45.0%
GACTTGAATGACTCGATAGC+AGG - chr7_3:46577323-46577342 None:intergenic 45.0%
! TAGATGTTTTCTCGGGCATG+AGG + chr7_3:46577349-46577368 Msa1106560:intron 45.0%
! AGATGTTTTCTCGGGCATGA+GGG + chr7_3:46577350-46577369 Msa1106560:intron 45.0%
CAGACGAACGATGTAAATGC+AGG + chr7_3:46577561-46577580 Msa1106560:intron 45.0%
GACTAATGTGACCTCAATCG+CGG - chr7_3:46577649-46577668 None:intergenic 45.0%
CAAACGAATACGTCGCAAGA+GGG + chr7_3:46578274-46578293 Msa1106560:CDS 45.0%
AGTCTTGCTCCTGCAATTCA+AGG + chr7_3:46578375-46578394 Msa1106560:CDS 45.0%
! GGAGTACCACTAATGAAACC+TGG + chr7_3:46578426-46578445 Msa1106560:CDS 45.0%
!! CCTTGAGTTGGATCAAATCC+AGG - chr7_3:46578447-46578466 None:intergenic 45.0%
CCTGGATTTGATCCAACTCA+AGG + chr7_3:46578444-46578463 Msa1106560:CDS 45.0%
! TCGGGTCTTTTTCCTTGAGT+TGG - chr7_3:46578459-46578478 None:intergenic 45.0%
GAGCCTAATAGTACCTGTTC+AGG - chr7_3:46578507-46578526 None:intergenic 45.0%
CACTTGTGACTGTTTGAGAG+AGG - chr7_3:46578629-46578648 None:intergenic 45.0%
TTGCTTTACTCCTGAAGCCT+TGG - chr7_3:46578903-46578922 None:intergenic 45.0%
CACCCAAACTGTTCAAAGGA+TGG - chr7_3:46578964-46578983 None:intergenic 45.0%
CCATCACCCAAACTGTTCAA+AGG - chr7_3:46578968-46578987 None:intergenic 45.0%
CCTTTGAACAGTTTGGGTGA+TGG + chr7_3:46578965-46578984 Msa1106560:CDS 45.0%
! GAACAATATCTGGCTGACTC+TGG + chr7_3:46579115-46579134 Msa1106560:CDS 45.0%
! TGGTGGTTTGCAAGACAAAG+AGG + chr7_3:46579286-46579305 Msa1106560:CDS 45.0%
! GGTGGTTTGCAAGACAAAGA+GGG + chr7_3:46579287-46579306 Msa1106560:CDS 45.0%
GTATCCGAGAACTCGTCATA+GGG + chr7_3:46579312-46579331 Msa1106560:CDS 45.0%
TGCAACATCAGGTCTAGCTA+TGG - chr7_3:46579372-46579391 None:intergenic 45.0%
AGTAAGCTCTCTCCAGTCAA+TGG + chr7_3:46579445-46579464 Msa1106560:intron 45.0%
TGGTAGATCGCGGTAATTAG+CGG + chr7_3:46579465-46579484 Msa1106560:intron 45.0%
ATCAGTGTCCGTGTCATGTC+TGG - chr7_3:46576857-46576876 None:intergenic 50.0%
!!! TGTCGGACACCGATTTTGTG+TGG + chr7_3:46576938-46576957 Msa1106560:intron 50.0%
CCTCTTGCGACGTATTCGTT+TGG - chr7_3:46578276-46578295 None:intergenic 50.0%
CCAAACGAATACGTCGCAAG+AGG + chr7_3:46578273-46578292 Msa1106560:CDS 50.0%
AGATGGTGCATACCCTGAAC+AGG + chr7_3:46578491-46578510 Msa1106560:CDS 50.0%
ACATGAACAGCCAAGGCTTC+AGG + chr7_3:46578890-46578909 Msa1106560:intron 50.0%
CTAAATTGAGTCAGGGCTGG+TGG + chr7_3:46579269-46579288 Msa1106560:intron 50.0%
GGTTTGCAAGACAAAGAGGG+AGG + chr7_3:46579290-46579309 Msa1106560:CDS 50.0%
GGTATCCGAGAACTCGTCAT+AGG + chr7_3:46579311-46579330 Msa1106560:CDS 50.0%
CCTTCCCTATGACGAGTTCT+CGG - chr7_3:46579319-46579338 None:intergenic 50.0%
CTCCAGTCAATGGTAGATCG+CGG + chr7_3:46579455-46579474 Msa1106560:intron 50.0%
TACCGCGATCTACCATTGAC+TGG - chr7_3:46579460-46579479 None:intergenic 50.0%
GCATCAAAACCTGAGGGAAC+AGG + chr7_3:46579764-46579783 Msa1106560:CDS 50.0%
GGGAACAGGTTCACCAACAA+AGG + chr7_3:46579778-46579797 Msa1106560:CDS 50.0%
!! GTGCTTGTTACTGGTGCTGC+TGG + chr7_3:46576591-46576610 Msa1106560:CDS 55.0%
TGCTGCTGGTCGTACAGGTT+TGG + chr7_3:46576605-46576624 Msa1106560:intron 55.0%
! GACCCTGATGGATCTGGGAT+AGG - chr7_3:46577299-46577318 None:intergenic 55.0%
! CAGGTGACCCTGATGGATCT+GGG - chr7_3:46577304-46577323 None:intergenic 55.0%
TCGATAGCAGGTGACCCTGA+TGG - chr7_3:46577311-46577330 None:intergenic 55.0%
CCTCAATCGCGGTTAGTGGT+GGG - chr7_3:46577638-46577657 None:intergenic 55.0%
ACCTCAATCGCGGTTAGTGG+TGG - chr7_3:46577639-46577658 None:intergenic 55.0%
GTGACCTCAATCGCGGTTAG+TGG - chr7_3:46577642-46577661 None:intergenic 55.0%
CTCAGCTTTCGGCCTCCAAT+TGG + chr7_3:46577795-46577814 Msa1106560:intron 55.0%
! GTGTTGGTAGGGTCTATGGG+TGG + chr7_3:46578926-46578945 Msa1106560:CDS 55.0%
CCGAGAACTCGTCATAGGGA+AGG + chr7_3:46579316-46579335 Msa1106560:CDS 55.0%
! GTTGGTGAACCTGTTCCCTC+AGG - chr7_3:46579776-46579795 None:intergenic 55.0%
!! ACTGGTGCTGCTGGTCGTAC+AGG + chr7_3:46576600-46576619 Msa1106560:CDS 60.0%
CACAGGACACGCCTAATCCG+AGG + chr7_3:46576968-46576987 Msa1106560:intron 60.0%
GCTGGGACACTCCTCGGATT+AGG - chr7_3:46576982-46577001 None:intergenic 60.0%
! GCAGGTGACCCTGATGGATC+TGG - chr7_3:46577305-46577324 None:intergenic 60.0%
!! CGCGGTTAGTGGTGGGTTTG+TGG - chr7_3:46577631-46577650 None:intergenic 60.0%
CCCACCACTAACCGCGATTG+AGG + chr7_3:46577635-46577654 Msa1106560:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 46576109 46580260 46576109 ID=Msa1106560;Name=Msa1106560
chr7_3 mRNA 46576109 46580260 46576109 ID=Msa1106560-mRNA-1;Parent=Msa1106560;Name=Msa1106560-mRNA-1;_AED=0.12;_eAED=0.12;_QI=227|1|1|1|0.85|0.75|8|241|332
chr7_3 exon 46576109 46576621 46576109 ID=Msa1106560-mRNA-1:exon:9538;Parent=Msa1106560-mRNA-1
chr7_3 exon 46578241 46578512 46578241 ID=Msa1106560-mRNA-1:exon:9539;Parent=Msa1106560-mRNA-1
chr7_3 exon 46578769 46578805 46578769 ID=Msa1106560-mRNA-1:exon:9540;Parent=Msa1106560-mRNA-1
chr7_3 exon 46578900 46578997 46578900 ID=Msa1106560-mRNA-1:exon:9541;Parent=Msa1106560-mRNA-1
chr7_3 exon 46579097 46579158 46579097 ID=Msa1106560-mRNA-1:exon:9542;Parent=Msa1106560-mRNA-1
chr7_3 exon 46579283 46579406 46579283 ID=Msa1106560-mRNA-1:exon:9543;Parent=Msa1106560-mRNA-1
chr7_3 exon 46579722 46579974 46579722 ID=Msa1106560-mRNA-1:exon:9544;Parent=Msa1106560-mRNA-1
chr7_3 exon 46580153 46580260 46580153 ID=Msa1106560-mRNA-1:exon:9545;Parent=Msa1106560-mRNA-1
chr7_3 five_prime_UTR 46576109 46576335 46576109 ID=Msa1106560-mRNA-1:five_prime_utr;Parent=Msa1106560-mRNA-1
chr7_3 CDS 46576336 46576621 46576336 ID=Msa1106560-mRNA-1:cds;Parent=Msa1106560-mRNA-1
chr7_3 CDS 46578241 46578512 46578241 ID=Msa1106560-mRNA-1:cds;Parent=Msa1106560-mRNA-1
chr7_3 CDS 46578769 46578805 46578769 ID=Msa1106560-mRNA-1:cds;Parent=Msa1106560-mRNA-1
chr7_3 CDS 46578900 46578997 46578900 ID=Msa1106560-mRNA-1:cds;Parent=Msa1106560-mRNA-1
chr7_3 CDS 46579097 46579158 46579097 ID=Msa1106560-mRNA-1:cds;Parent=Msa1106560-mRNA-1
chr7_3 CDS 46579283 46579406 46579283 ID=Msa1106560-mRNA-1:cds;Parent=Msa1106560-mRNA-1
chr7_3 CDS 46579722 46579841 46579722 ID=Msa1106560-mRNA-1:cds;Parent=Msa1106560-mRNA-1
chr7_3 three_prime_UTR 46579842 46579974 46579842 ID=Msa1106560-mRNA-1:three_prime_utr;Parent=Msa1106560-mRNA-1
chr7_3 three_prime_UTR 46580153 46580260 46580153 ID=Msa1106560-mRNA-1:three_prime_utr;Parent=Msa1106560-mRNA-1
Gene Sequence

>Msa1106560

ATGGTTATTATGGCTACTACTACACGTGTTCCTTTTGTTTCTGCTACCACATTTTTTCCTAACCAATGCCATAAATATTCTTTGGTGGCAAGGACAATTCATTCACCAGTTTCTTATGCATCATTAAGGCTTTCTTCTTGCTATTCTACTTCTTTGGTTTCACTTGCATTACCAAGGAGTTTTGAGGGTGTGAAGAGAGGTGCAAATAGAAGAAGTGTTGTTGTTGTTGCTATGGCTGAGAATTCAAAGAGTACTGTGCTTGTTACTGGTGCTGCTGGTCGTACAGGTCAAATAGTTTATAAAAAGTTAAAAGAGCGGCCAAACGAATACGTCGCAAGAGGGTTAGTTAGAACAGAAGAAAGCAAGCAGAAAATTGGTGCTGCAGATGATGTTTTTATCGGTGATATAAGAGATACCGAAAGTCTTGCTCCTGCAATTCAAGGTATAGATGCTCTCATAATCCTTACAAGTGGAGTACCACTAATGAAACCTGGATTTGATCCAACTCAAGGAAAAAGACCCGAGTTCTATTTTGAAGATGGTGCATACCCTGAACAGGTTGACTGGATCGGACAGAAAAATCAAATAGATGCTGCCAAGGCTTCAGGAGTAAAGCAAATTGTGTTGGTAGGGTCTATGGGTGGAACAGACCTTAACCATCCTTTGAACAGTTTGGGTGATGGGAATATATTGGTTTGGAAAAGAAAGGCTGAACAATATCTGGCTGACTCTGGTATTCCGTATACGATTATAAGGGCTGGTGGTTTGCAAGACAAAGAGGGAGGTATCCGAGAACTCGTCATAGGGAAGGATGATGAGCTTCTAAAGACCGACATCAGAACCATAGCTAGACCTGATGTTGCAGAAGTCTGTATTCAGGCACTAAATTTTGAGGAGGCTCAATTCAAGGCATTTGATTTGGCATCAAAACCTGAGGGAACAGGTTCACCAACAAAGGACTTTAAGGCTTTATTTTCCCAGATCACTACTCGTTTTTGA

Protein sequence

>Msa1106560

MVIMATTTRVPFVSATTFFPNQCHKYSLVARTIHSPVSYASLRLSSCYSTSLVSLALPRSFEGVKRGANRRSVVVVAMAENSKSTVLVTGAAGRTGQIVYKKLKERPNEYVARGLVRTEESKQKIGAADDVFIGDIRDTESLAPAIQGIDALIILTSGVPLMKPGFDPTQGKRPEFYFEDGAYPEQVDWIGQKNQIDAAKASGVKQIVLVGSMGGTDLNHPLNSLGDGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELVIGKDDELLKTDIRTIARPDVAEVCIQALNFEEAQFKAFDLASKPEGTGSPTKDFKALFSQITTRF*