AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0094180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094180 MtrunA17_Chr2g0332171 86.598 485 28 3 430 877 1 485 0.0 848
Msa0094180 MtrunA17_Chr2g0332171 65.665 466 95 7 6 407 4 468 0.0 560
Msa0094180 MtrunA17_Chr2g0332181 93.220 413 21 2 1 407 1 412 0.0 775
Msa0094180 MtrunA17_Chr2g0332181 71.365 447 105 5 432 877 5 429 0.0 610
Msa0094180 MtrunA17_Chr3g0138431 62.671 292 107 2 586 877 185 474 4.27e-121 375
Msa0094180 MtrunA17_Chr3g0138431 43.041 467 194 8 2 407 3 458 3.32e-111 349
Msa0094180 MtrunA17_Chr1g0148681 59.589 292 116 2 586 877 128 417 2.62e-111 347
Msa0094180 MtrunA17_Chr1g0148681 46.875 416 186 6 10 407 3 401 5.47e-108 338
Msa0094180 MtrunA17_Chr3g0125051 52.069 290 135 2 584 870 207 495 2.61e-94 306
Msa0094180 MtrunA17_Chr3g0125051 53.405 279 130 0 137 415 215 493 2.11e-93 303
Msa0094180 MtrunA17_Chr1g0152871 50.558 269 129 3 605 870 82 349 3.41e-86 279
Msa0094180 MtrunA17_Chr1g0152871 48.134 268 136 2 143 407 72 339 2.48e-81 266
Msa0094180 MtrunA17_Chr3g0125041 46.595 279 148 1 593 870 222 500 1.16e-83 277
Msa0094180 MtrunA17_Chr3g0125041 45.896 268 143 1 142 407 223 490 4.40e-78 262
Msa0094180 MtrunA17_Chr3g0134421 45.000 280 150 3 596 872 66 344 1.17e-71 240
Msa0094180 MtrunA17_Chr3g0134421 43.233 266 149 1 144 407 66 331 3.51e-65 222
Msa0094180 MtrunA17_Chr3g0134411 43.860 285 156 3 596 877 73 356 1.04e-69 235
Msa0094180 MtrunA17_Chr3g0134411 40.217 276 151 2 146 407 63 338 1.80e-62 215
Msa0094180 MtrunA17_Chr3g0134401 44.891 274 149 2 605 877 65 337 6.24e-69 232
Msa0094180 MtrunA17_Chr3g0134401 41.637 281 152 2 138 411 48 323 2.07e-66 225
Msa0094180 MtrunA17_Chr3g0134441 48.031 254 129 2 619 870 69 321 2.60e-66 224
Msa0094180 MtrunA17_Chr3g0134441 46.610 236 124 1 167 400 69 304 2.71e-61 211
Msa0094180 MtrunA17_Chr3g0134431 44.355 248 112 5 618 862 13 237 6.64e-54 187
Msa0094180 MtrunA17_Chr3g0134431 41.564 243 117 4 166 405 13 233 2.08e-48 172
Msa0094180 MtrunA17_Chr5g0441371 42.912 261 138 7 146 403 148 400 2.53e-51 186
Msa0094180 MtrunA17_Chr5g0441371 37.857 280 164 7 598 875 148 419 1.96e-49 180
Msa0094180 MtrunA17_Chr7g0255771 40.502 279 155 8 129 403 167 438 1.73e-50 184
Msa0094180 MtrunA17_Chr7g0255771 36.268 284 173 7 593 873 177 455 1.08e-47 176
Msa0094180 MtrunA17_Chr5g0406741 36.918 279 166 6 588 865 146 415 3.46e-48 177
Msa0094180 MtrunA17_Chr5g0406741 40.230 261 143 6 122 377 128 380 6.75e-47 173
Msa0094180 MtrunA17_Chr8g0370671 38.211 246 145 3 162 407 176 414 9.50e-45 167
Msa0094180 MtrunA17_Chr8g0370671 34.944 269 166 5 598 865 159 419 1.24e-43 164
Msa0094180 MtrunA17_Chr8g0357001 37.262 263 156 5 569 830 441 695 1.60e-43 169
Msa0094180 MtrunA17_Chr8g0357001 37.607 234 138 4 145 378 470 695 1.08e-40 160
Msa0094180 MtrunA17_Chr3g0102851 30.502 259 164 7 141 392 11 260 4.28e-23 100
Msa0094180 MtrunA17_Chr3g0102851 31.980 197 125 5 647 838 60 252 1.58e-22 99.0
Msa0094180 MtrunA17_Chr3g0103471 35.106 188 113 5 195 377 50 233 3.19e-22 97.8
Msa0094180 MtrunA17_Chr3g0103471 33.511 188 116 5 647 829 50 233 5.22e-22 97.1
Msa0094180 MtrunA17_Chr3g0102861 31.915 188 119 5 647 829 50 233 2.77e-21 95.1
Msa0094180 MtrunA17_Chr3g0102861 30.603 232 147 8 195 417 50 276 4.12e-21 94.4
Msa0094180 MtrunA17_Chr3g0102621 29.596 223 143 6 612 829 26 239 4.40e-21 94.4
Msa0094180 MtrunA17_Chr3g0102621 31.915 188 119 5 195 377 56 239 3.70e-20 91.7
Msa0094180 MtrunA17_Chr3g0102631 34.731 167 100 5 668 829 4 166 1.01e-20 91.7
Msa0094180 MtrunA17_Chr3g0102631 35.928 167 98 5 216 377 4 166 3.16e-20 90.1
Msa0094180 MtrunA17_Chr3g0102651 34.731 167 100 5 668 829 4 166 1.01e-20 91.7
Msa0094180 MtrunA17_Chr3g0102651 35.928 167 98 5 216 377 4 166 3.16e-20 90.1
Msa0094180 MtrunA17_Chr3g0102661 34.731 167 100 5 668 829 4 166 1.01e-20 91.7
Msa0094180 MtrunA17_Chr3g0102661 35.928 167 98 5 216 377 4 166 3.16e-20 90.1
Msa0094180 MtrunA17_Chr3g0102671 34.731 167 100 5 668 829 4 166 1.01e-20 91.7
Msa0094180 MtrunA17_Chr3g0102671 35.928 167 98 5 216 377 4 166 3.16e-20 90.1
Msa0094180 MtrunA17_Chr1g0161581 34.254 181 97 5 634 812 364 524 7.71e-16 81.6
Msa0094180 MtrunA17_Chr1g0161581 34.356 163 92 3 196 357 372 520 2.38e-15 80.1
Msa0094180 MtrunA17_Chr5g0418901 41.772 79 46 0 217 295 7 85 2.72e-14 69.3
Msa0094180 MtrunA17_Chr5g0418901 36.709 79 50 0 669 747 7 85 1.33e-13 67.4
Msa0094180 MtrunA17_Chr5g0398791 29.252 147 101 2 188 333 27 171 4.55e-13 68.2
Msa0094180 MtrunA17_Chr5g0398791 29.252 147 101 2 640 785 27 171 7.86e-13 67.8
Msa0094180 MtrunA17_Chr6g0462911 26.609 233 138 7 648 861 75 293 5.07e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094180 AT1G80370.1 53.229 449 186 7 445 877 19 459 4.15e-143 432
Msa0094180 AT1G80370.1 67.803 264 85 0 144 407 179 442 1.14e-124 384
Msa0094180 AT1G15570.1 51.282 468 181 13 437 877 3 450 1.92e-141 427
Msa0094180 AT1G15570.1 58.917 314 117 2 97 407 129 433 5.22e-123 379
Msa0094180 AT5G25380.4 48.736 435 196 8 446 877 31 441 1.93e-125 385
Msa0094180 AT5G25380.4 48.718 429 181 6 2 407 12 424 2.59e-121 375
Msa0094180 AT5G25380.3 48.506 435 191 7 446 877 31 435 3.93e-125 384
Msa0094180 AT5G25380.3 48.810 420 188 5 2 407 12 418 4.96e-122 376
Msa0094180 AT5G25380.1 48.506 435 191 7 446 877 31 435 3.93e-125 384
Msa0094180 AT5G25380.1 48.810 420 188 5 2 407 12 418 4.96e-122 376
Msa0094180 AT5G11300.1 64.286 280 99 1 598 877 156 434 3.14e-124 382
Msa0094180 AT5G11300.1 65.649 262 90 0 146 407 156 417 1.70e-118 367
Msa0094180 AT5G25380.2 48.810 420 188 5 2 407 12 418 2.30e-122 377
Msa0094180 AT5G25380.2 48.687 419 182 7 446 861 31 419 3.36e-120 371
Msa0094180 AT5G11300.2 46.597 382 160 7 3 362 13 372 2.81e-99 316
Msa0094180 AT5G11300.2 67.742 217 70 0 598 814 156 372 9.94e-99 315
Msa0094180 AT1G44110.1 48.814 295 149 2 583 877 164 456 7.74e-92 298
Msa0094180 AT1G44110.1 46.440 323 159 2 93 415 139 447 2.17e-91 297
Msa0094180 AT5G43080.1 50.714 280 136 2 599 877 72 350 6.15e-91 292
Msa0094180 AT5G43080.1 47.015 268 138 1 144 407 65 332 9.82e-82 267
Msa0094180 AT1G77390.1 41.429 420 201 7 474 860 16 423 2.99e-90 293
Msa0094180 AT1G77390.1 53.008 266 119 2 145 407 161 423 2.64e-86 283
Msa0094180 AT1G47210.2 49.645 282 138 3 599 877 87 367 2.27e-89 288
Msa0094180 AT1G47210.2 46.947 262 137 1 148 407 88 349 1.26e-80 265
Msa0094180 AT5G43080.2 51.071 280 130 3 599 877 72 345 2.29e-89 288
Msa0094180 AT5G43080.2 47.388 268 132 2 144 407 65 327 5.09e-80 263
Msa0094180 AT1G47230.1 48.727 275 137 3 601 872 82 355 8.92e-85 276
Msa0094180 AT1G47230.1 41.975 324 178 4 92 407 21 342 6.54e-79 260
Msa0094180 AT1G47230.2 48.551 276 137 4 601 872 82 356 4.82e-83 271
Msa0094180 AT1G47230.2 41.846 325 178 5 92 407 21 343 3.50e-77 256
Msa0094180 AT1G47220.1 48.339 271 137 2 599 867 41 310 5.01e-81 265
Msa0094180 AT1G47220.1 46.545 275 142 2 139 411 36 307 2.52e-76 252
Msa0094180 AT5G06150.1 35.689 283 172 5 592 873 159 432 7.59e-48 177
Msa0094180 AT5G06150.1 37.722 281 163 6 128 407 150 419 1.65e-46 173
Msa0094180 AT1G20610.1 32.898 383 225 12 42 407 48 415 5.14e-47 174
Msa0094180 AT1G20610.1 35.740 277 166 8 588 861 149 416 6.01e-44 165
Msa0094180 AT1G76310.1 36.042 283 170 7 590 870 152 425 4.35e-44 166
Msa0094180 AT1G76310.1 34.983 303 184 6 114 410 124 419 3.60e-42 160
Msa0094180 AT4G37490.1 35.915 284 168 8 598 875 148 423 7.47e-44 165
Msa0094180 AT4G37490.1 37.132 272 154 9 146 409 148 410 5.59e-41 156
Msa0094180 AT1G76310.2 38.819 237 136 5 590 824 152 381 3.11e-43 162
Msa0094180 AT1G76310.2 37.358 265 153 6 114 372 124 381 1.57e-41 157
Msa0094180 AT3G11520.1 34.237 295 182 5 582 873 124 409 7.29e-43 162
Msa0094180 AT3G11520.1 36.458 288 172 5 121 405 115 394 1.79e-42 160
Msa0094180 AT3G11520.2 36.047 258 154 4 582 836 124 373 3.39e-42 159
Msa0094180 AT3G11520.2 38.577 267 153 5 121 384 115 373 4.97e-42 158
Msa0094180 AT2G26760.1 33.862 378 207 12 46 403 11 365 4.54e-42 159
Msa0094180 AT2G26760.1 36.496 274 164 7 598 869 113 378 1.11e-41 157
Msa0094180 AT2G17620.1 40.149 269 149 6 147 411 153 413 1.86e-40 155
Msa0094180 AT2G17620.1 35.395 291 171 7 588 873 144 422 1.58e-39 152
Msa0094180 AT4G35620.1 38.976 254 148 3 162 415 172 418 9.34e-39 150
Msa0094180 AT4G35620.1 36.059 269 163 5 598 865 155 415 1.22e-38 150
Msa0094180 AT1G76310.3 32.797 311 170 8 590 870 152 453 1.42e-38 150
Msa0094180 AT1G76310.3 32.326 331 183 7 114 410 124 447 2.99e-37 146
Msa0094180 AT4G35620.2 42.593 216 117 3 162 377 172 380 7.20e-38 146
Msa0094180 AT4G35620.2 38.627 233 135 4 598 829 155 380 5.52e-37 144
Msa0094180 AT1G16330.1 37.339 233 138 4 146 378 380 604 1.00e-37 151
Msa0094180 AT1G16330.1 38.158 228 133 4 604 830 384 604 4.51e-37 149
Msa0094180 AT1G47210.1 55.660 106 45 1 599 702 87 192 3.71e-34 130
Msa0094180 AT1G47210.1 51.429 105 49 1 148 250 88 192 1.50e-31 122
Msa0094180 AT1G76310.4 40.113 177 103 3 590 764 152 327 3.21e-33 132
Msa0094180 AT1G76310.4 38.614 202 117 4 114 309 124 324 1.63e-31 127
Msa0094180 AT5G06150.2 37.427 171 104 2 592 761 159 327 2.29e-32 129
Msa0094180 AT5G06150.2 38.798 183 106 3 128 309 150 327 8.65e-31 124
Msa0094180 AT1G20590.1 37.107 159 94 2 673 831 63 215 3.18e-29 118
Msa0094180 AT1G20590.1 37.107 159 94 2 221 379 63 215 2.06e-27 112
Msa0094180 AT1G14750.2 36.364 165 95 5 191 351 214 372 4.37e-18 88.2
Msa0094180 AT1G14750.2 36.970 165 94 5 643 803 214 372 6.39e-18 87.8
Msa0094180 AT1G14750.1 36.364 165 95 5 191 351 382 540 8.16e-18 88.6
Msa0094180 AT1G14750.1 36.970 165 94 5 643 803 382 540 9.88e-18 88.2
Msa0094180 AT1G14750.3 36.364 165 95 5 191 351 382 540 1.37e-17 87.8
Msa0094180 AT1G14750.3 36.970 165 94 5 643 803 382 540 1.59e-17 87.8
Msa0094180 AT1G14750.4 36.364 165 94 6 191 351 214 371 6.92e-17 84.3
Msa0094180 AT1G14750.4 36.970 165 93 6 643 803 214 371 9.15e-17 84.0
Msa0094180 AT1G34460.2 26.984 189 113 4 572 759 228 392 3.03e-16 83.2
Msa0094180 AT1G34460.2 29.474 190 108 4 119 307 228 392 1.19e-15 81.3
Msa0094180 AT1G34460.4 26.984 189 113 4 572 759 228 392 3.03e-16 83.2
Msa0094180 AT1G34460.4 29.474 190 108 4 119 307 228 392 1.19e-15 81.3
Msa0094180 AT1G34460.9 29.952 207 111 6 102 307 208 381 3.05e-16 83.2
Msa0094180 AT1G34460.9 27.368 190 114 4 572 759 214 381 3.33e-16 82.8
Msa0094180 AT1G34460.5 29.952 207 111 6 102 307 222 395 3.57e-16 82.8
Msa0094180 AT1G34460.5 27.368 190 114 4 572 759 228 395 3.79e-16 82.8
Msa0094180 AT1G34460.7 27.368 190 114 4 572 759 228 395 3.57e-16 82.8
Msa0094180 AT1G34460.7 29.952 207 111 6 102 307 222 395 4.29e-16 82.8
Msa0094180 AT1G34460.6 27.368 190 114 4 572 759 228 395 3.62e-16 82.8
Msa0094180 AT1G34460.6 29.952 207 111 6 102 307 222 395 3.81e-16 82.8
Msa0094180 AT1G34460.3 27.368 190 114 4 572 759 228 395 3.62e-16 82.8
Msa0094180 AT1G34460.3 29.952 207 111 6 102 307 222 395 3.81e-16 82.8
Msa0094180 AT1G34460.8 27.368 190 114 4 572 759 228 395 3.62e-16 82.8
Msa0094180 AT1G34460.8 29.952 207 111 6 102 307 222 395 3.81e-16 82.8
Msa0094180 AT1G34460.1 27.368 190 114 4 572 759 228 395 3.62e-16 82.8
Msa0094180 AT1G34460.1 29.952 207 111 6 102 307 222 395 3.81e-16 82.8

Find 186 sgRNAs with CRISPR-Local

Find 562 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTGCATCGGCCTTGTTTC+TGG 0.105679 1_2:-77300654 Msa0094180:CDS
TCATATATTAGTTACAAATT+AGG 0.192669 1_2:+77300136 None:intergenic
CATATATTAGTTACAAATTA+GGG 0.195696 1_2:+77300137 None:intergenic
CATCTTCAAAACATTGTTTC+AGG 0.218882 1_2:+77307106 None:intergenic
AACATTGTTTCAAGCAGTTT+TGG 0.255031 1_2:+77300195 None:intergenic
TTCGGAATCACTATCTTTCT+TGG 0.272855 1_2:+77309466 None:intergenic
AGGTAACATTTCTGAACTTT+TGG 0.274606 1_2:-77302331 Msa0094180:CDS
AACATTGTTTCAGGTAGTTT+TGG 0.279837 1_2:+77307115 None:intergenic
TGAGGTTCCATCCGTTTCTT+TGG 0.292203 1_2:-77309707 Msa0094180:CDS
TGCTTCTGATCCTGAGTTCC+TGG 0.293978 1_2:+77303070 None:intergenic
TCAATATCAGCATCTATATT+AGG 0.311471 1_2:+77309413 None:intergenic
TGTCAGGTGCTTATATGATT+TGG 0.315926 1_2:-77302626 Msa0094180:intron
TGGAAGACAATGCACCTCTT+AGG 0.323329 1_2:-77302606 Msa0094180:CDS
TTGTACGGATCGCAGGTAAA+TGG 0.323643 1_2:+77307264 None:intergenic
TCCAAGCATGCGTGCAATAC+TGG 0.323972 1_2:-77301954 Msa0094180:CDS
AGAGACTGCTCTTTCTGAAT+TGG 0.337008 1_2:+77309840 None:intergenic
GGAGTACTTGGCAAATTATC+TGG 0.338660 1_2:-77307587 Msa0094180:CDS
CGTGCGCGAGTTAATCTAAC+TGG 0.339024 1_2:+77309946 None:intergenic
TGTACTGTTTCCATGAAGTT+AGG 0.339878 1_2:+77301989 None:intergenic
GAACTAACACTGTTGAACTA+TGG 0.345406 1_2:-77300704 Msa0094180:CDS
GAATTAACACTGATGAACTA+TGG 0.348703 1_2:-77307562 Msa0094180:CDS
TGTGCCTTACCTTGCCTTGT+CGG 0.349412 1_2:+77307237 None:intergenic
CAAAGGTTGGATTCAAATCT+AGG 0.350662 1_2:-77299809 Msa0094180:three_prime_UTR
TAGATTTGAATCCAACCTTT+GGG 0.352152 1_2:+77299811 None:intergenic
CAAATCTGATGCTTTGTAAG+AGG 0.356045 1_2:+77300481 None:intergenic
CAAATCTGATGCTTTGTAAG+AGG 0.356045 1_2:+77307337 None:intergenic
TTCAGAAATGTTACCTCTCT+TGG 0.357627 1_2:+77302338 None:intergenic
TGACTGACAGGTACTAAATA+TGG 0.361866 1_2:-77307933 Msa0094180:intron
CCTGGTGCTACCTCCTTCAT+TGG 0.361989 1_2:+77303088 None:intergenic
ATCTGAAATCAAGACATTCT+AGG 0.364711 1_2:+77299937 None:intergenic
CTAGATTTGAATCCAACCTT+TGG 0.370381 1_2:+77299810 None:intergenic
GCATCTATGTCAGCGACATC+TGG 0.374347 1_2:+77302294 None:intergenic
TGTACTGTTTCCATGAAGTT+AGG 0.376714 1_2:+77308841 None:intergenic
GAAGCACCTGAGGAAAGTTT+TGG 0.385906 1_2:+77300997 None:intergenic
GCAGAAATCTTCAACATTGT+TGG 0.389732 1_2:+77308064 None:intergenic
TGAATCCAACCTTTGGGGTC+AGG 0.391190 1_2:+77299817 None:intergenic
TCCTTCTATGATTGCTGCAT+CGG 0.395163 1_2:-77300666 Msa0094180:CDS
TCGCTGTATATCTCATTGAT+TGG 0.398394 1_2:-77301604 Msa0094180:CDS
ATACATTTAGTGACCTTATG+AGG 0.398898 1_2:-77300007 Msa0094180:three_prime_UTR
AAGGCCTCATCCTAACTTCA+TGG 0.399286 1_2:-77308851 Msa0094180:CDS
TGATTGACAGGTAGTAAAAC+TGG 0.408227 1_2:-77301068 Msa0094180:intron
AAGGCCTTATCCTAACTTCA+TGG 0.409072 1_2:-77301999 Msa0094180:CDS
TAGCGTTGAGTTGGAGTACT+TGG 0.415812 1_2:-77307599 Msa0094180:CDS
TTTGTTTGTGTGTAGCTCAA+TGG 0.418666 1_2:-77300237 Msa0094180:intron
CCTTCGAGTTCTCAAAAGAA+AGG 0.422294 1_2:-77302514 Msa0094180:intron
TTGAAGTCTGTGTCTTTCAA+TGG 0.425367 1_2:+77308530 None:intergenic
ATCAGTATCGCACGCATGGC+TGG 0.428189 1_2:+77308805 None:intergenic
ACCAGTATTGCACGCATGCT+TGG 0.435719 1_2:+77301953 None:intergenic
AGGAGAGTTGCCACCATTGA+AGG 0.439636 1_2:-77309902 Msa0094180:CDS
GTTGAAACATTGAGTTGATC+CGG 0.442711 1_2:+77309730 None:intergenic
GCTGTGGCTTTAAGTACAAC+TGG 0.444956 1_2:-77303121 Msa0094180:CDS
GCCGATGCAGCAATCATAGA+AGG 0.448359 1_2:+77300665 None:intergenic
CCTTTGATTTCTCAAGCTAA+AGG 0.448884 1_2:-77309628 Msa0094180:intron
GTTGCTGCTTTAAGTGCAAC+AGG 0.450764 1_2:-77309922 Msa0094180:CDS
TCTGAATGCGCCCAAGGGTC+CGG 0.454651 1_2:-77309441 Msa0094180:CDS
AAGAGTGTCAGTTCGAAAGC+TGG 0.455549 1_2:-77309976 Msa0094180:CDS
CGGCCTTGTTTCTGGCAAGA+TGG 0.455722 1_2:-77300646 Msa0094180:CDS
GAGCAGATGGTTCAGATGTC+TGG 0.462944 1_2:+77309653 None:intergenic
GCAGATGCAGCAATCATAGA+AGG 0.465891 1_2:+77307523 None:intergenic
AACATTGAGTTGATCCGGCT+TGG 0.467189 1_2:+77309735 None:intergenic
TTTGAAACATGAGGTTGAGC+AGG 0.469242 1_2:+77302739 None:intergenic
CTTGGGCGCATTCAGAAGTT+CGG 0.469750 1_2:+77309448 None:intergenic
GTTTCCATGAAGTTAGGATA+AGG 0.469825 1_2:+77301995 None:intergenic
TGTGCTACATCATCCTTCAA+TGG 0.470617 1_2:+77309889 None:intergenic
ATTAGGAATATCCGGACCCT+TGG 0.473636 1_2:+77309430 None:intergenic
TGCATTGTCTTCCAAAGAAA+CGG 0.477476 1_2:+77309696 None:intergenic
ATAAGCAAGAACCCCTCATA+AGG 0.481248 1_2:+77299994 None:intergenic
AAGAGTGTCACTCTGAAAGC+TGG 0.489355 1_2:-77303175 Msa0094180:CDS
CTGCCGTGTTTCTTGCAAGA+TGG 0.490738 1_2:-77307504 Msa0094180:CDS
GCATCTATATTAGGAATATC+CGG 0.492431 1_2:+77309422 None:intergenic
TAGAATGTCTTGATTTCAGA+TGG 0.493368 1_2:-77299935 Msa0094180:three_prime_UTR
AAGCAGATATTCTAGACGTC+TGG 0.493768 1_2:+77302539 None:intergenic
TGCGTGCAATACTGGTTGAT+TGG 0.494915 1_2:-77301946 Msa0094180:CDS
TGCGTGCGATACTGATTGAT+TGG 0.495650 1_2:-77308798 Msa0094180:CDS
AAAAGAGAGACTTCAGCTGC+TGG 0.496709 1_2:-77301558 Msa0094180:CDS
GAGGCATAGTGTTCAAGAGT+TGG 0.504331 1_2:+77300500 None:intergenic
GAGGCATAGTGTTCAAGAGT+TGG 0.504331 1_2:+77307356 None:intergenic
TCAACCTCATGTTTCAAATG+AGG 0.507462 1_2:-77302734 Msa0094180:CDS
AATTCGTGTTCAGGTTTCTG+AGG 0.508757 1_2:-77301657 Msa0094180:intron
TGGCCACCAATCAGATTTGA+AGG 0.509110 1_2:+77309673 None:intergenic
TTGTGTGTACTTCTTGCGGA+TGG 0.510973 1_2:+77300394 None:intergenic
ATAACTGCTAGGCTAAGAAA+AGG 0.512626 1_2:-77302774 Msa0094180:intron
TACATTTAGTGACCTTATGA+GGG 0.512739 1_2:-77300006 Msa0094180:three_prime_UTR
GGTGCTACCTCCTTCATTGG+TGG 0.514272 1_2:+77303091 None:intergenic
GAAGATGAAGATGAAGATGA+TGG 0.515374 1_2:-77307090 Msa0094180:CDS
AGAGCAGTCTCTGATGATAC+AGG 0.515559 1_2:-77309829 Msa0094180:CDS
TAAGAAGAGGGCAGCTCTTG+AGG 0.519194 1_2:-77309797 Msa0094180:CDS
TCTTGCGGATGGAGGCTAAA+GGG 0.521671 1_2:+77300405 None:intergenic
TTAGGAATATCCGGACCCTT+GGG 0.522039 1_2:+77309431 None:intergenic
GTTTCTTGCAAGATGGACAT+TGG 0.525644 1_2:-77307497 Msa0094180:CDS
AATGCACCTTCAAATCTGAT+TGG 0.526829 1_2:-77309679 Msa0094180:CDS
AAACAATGTTCTGAATATGA+TGG 0.530961 1_2:-77300182 Msa0094180:exon
CGAACTTCTGAATGCGCCCA+AGG 0.533501 1_2:-77309447 Msa0094180:CDS
GAAAACAAAGCTGACCAAGC+CGG 0.533977 1_2:-77309749 Msa0094180:CDS
GCATTCCTGACCCCAAAGGT+TGG 0.535284 1_2:-77299822 Msa0094180:three_prime_UTR
CTTTCTGAATTGGTGCCTTG+CGG 0.536646 1_2:+77309850 None:intergenic
AGCAAATAGTTGATATGAAG+AGG 0.537833 1_2:+77301027 None:intergenic
TCAACAGTGTTAGTTCAGCC+AGG 0.538431 1_2:+77300711 None:intergenic
TGGACAGTTACCACCAATGA+AGG 0.540275 1_2:-77303101 Msa0094180:CDS
CTGCCCTCTTCTTACGCGGA+AGG 0.543488 1_2:+77309806 None:intergenic
ATCAATCAGTATCGCACGCA+TGG 0.544275 1_2:+77308801 None:intergenic
ACTGATTGATTGGCTTGTAG+AGG 0.548043 1_2:-77308788 Msa0094180:intron
CCAATGAAGGAGGTAGCACC+AGG 0.548598 1_2:-77303088 Msa0094180:CDS
TGGATCAGTCAAGGCACCCA+TGG 0.548884 1_2:-77307477 Msa0094180:CDS
GGAGGTAGCACCAGGAACTC+AGG 0.550797 1_2:-77303080 Msa0094180:CDS
CTACTACCAAAACTTTCCTC+AGG 0.552988 1_2:-77301003 Msa0094180:intron
GCAGAGACCTAGCATTGAGT+TGG 0.555323 1_2:-77300750 Msa0094180:intron
GGAGTACTTGACAAATTACC+TGG 0.556611 1_2:-77300729 Msa0094180:CDS
TAGATCAGTCAAGCCACCCA+TGG 0.558247 1_2:-77300619 Msa0094180:CDS
ATTCGTGTTCAGGTTTCTGA+GGG 0.558900 1_2:-77301656 Msa0094180:intron
GCACCTTCAAATCTGATTGG+TGG 0.558942 1_2:-77309676 Msa0094180:CDS
GAAATCAAAGGCTGAGCAGA+TGG 0.560517 1_2:+77309640 None:intergenic
GCAGACACCTAGCGTTGAGT+TGG 0.562475 1_2:-77307608 Msa0094180:intron
GGTGGTAGCTCAGCAGCTGA+TGG 0.562864 1_2:+77302709 None:intergenic
GCTGGCATTCCTGACCCCAA+AGG 0.566725 1_2:-77299826 Msa0094180:three_prime_UTR
TTGGGGTCAGGAATGCCAGC+AGG 0.566814 1_2:+77299829 None:intergenic
TGGTTGACACTAATCCTAAG+AGG 0.567872 1_2:+77302592 None:intergenic
CAGGCCTTCCGCGTAAGAAG+AGG 0.568368 1_2:-77309810 Msa0094180:CDS
AAGTACTCCAACTCAATGCT+AGG 0.568980 1_2:+77300743 None:intergenic
CATATATATCAGCAGCATAG+TGG 0.569484 1_2:+77302244 None:intergenic
TTCTTGCGGATGGAGGCTAA+AGG 0.569640 1_2:+77300404 None:intergenic
TGTCTTGTGTGTACTTCTTG+CGG 0.570627 1_2:+77300390 None:intergenic
TACAAAATACCGACAAGGCA+AGG 0.570855 1_2:-77307246 Msa0094180:intron
AAAGAGAGACTTCAGCTGCT+GGG 0.571332 1_2:-77301557 Msa0094180:CDS
CAAATTGTTGCAGCCAAGAG+AGG 0.574326 1_2:-77302351 Msa0094180:CDS
ACTGGTTGATTGGCTTGTTG+AGG 0.574506 1_2:-77301936 Msa0094180:intron
AGATAACACATACACAAAAG+AGG 0.576077 1_2:-77301372 Msa0094180:CDS
AGCGGCACAAGCTTCCTACA+AGG 0.577919 1_2:-77300865 Msa0094180:intron
AGGCCTTCCGCGTAAGAAGA+GGG 0.579585 1_2:-77309809 Msa0094180:CDS
CCTTTAGCTTGAGAAATCAA+AGG 0.586000 1_2:+77309628 None:intergenic
AGCAGCACAAGCTTCATACC+AGG 0.588146 1_2:-77307721 Msa0094180:intron
ATTGACTCGTGCTCAAGCTG+TGG 0.588861 1_2:-77303137 Msa0094180:CDS
TGTGTACTTCTTGCGGATGG+AGG 0.588900 1_2:+77300397 None:intergenic
TGTCAGTTCGAAAGCTGGAG+AGG 0.591229 1_2:-77309971 Msa0094180:CDS
AAGTACTCCAACTCAACGCT+AGG 0.591270 1_2:+77307601 None:intergenic
GTTTCCATGAAGTTAGGATG+AGG 0.594344 1_2:+77308847 None:intergenic
TGTCACTCTGAAAGCTGGAG+AGG 0.595520 1_2:-77303170 Msa0094180:CDS
GCATAGTGGCTGCATAGTTG+AGG 0.597253 1_2:+77302258 None:intergenic
GCATAGAAGCTGCATAGTTG+AGG 0.597397 1_2:+77309386 None:intergenic
ATGGACAAATGATGAATGCA+AGG 0.598852 1_2:-77300163 Msa0094180:three_prime_UTR
TGACCACTTGCGTGTTGCTG+AGG 0.600917 1_2:-77302223 Msa0094180:intron
CTGCTAGGCTAAGAAAAGGA+AGG 0.601072 1_2:-77302770 Msa0094180:intron
TGACAGCTTGCGTATTGCTG+AGG 0.601154 1_2:-77309351 Msa0094180:intron
AGACGTCTAGAATATCTGCT+TGG 0.603052 1_2:-77302537 Msa0094180:CDS
GGATCAGTCAAGGCACCCAT+GGG 0.607489 1_2:-77307476 Msa0094180:intron
TGTCCATCTTGCCAGAAACA+AGG 0.608796 1_2:+77300643 None:intergenic
TTGTCTTCCAAAGAAACGGA+TGG 0.609534 1_2:+77309700 None:intergenic
AGATCAGTCAAGCCACCCAT+GGG 0.610846 1_2:-77300618 Msa0094180:intron
GAACTTCTGAATGCGCCCAA+GGG 0.612674 1_2:-77309446 Msa0094180:CDS
AGACACAGACTTCAACTGCT+AGG 0.621260 1_2:-77308522 Msa0094180:CDS
TGAAGATTTCTGCGTCATGA+CGG 0.623881 1_2:-77308054 Msa0094180:CDS
TCGTAGGAGGTTTCTTCGAG+CGG 0.626601 1_2:-77300883 Msa0094180:intron
ATGCAGCAATCATAGAAGGA+AGG 0.626634 1_2:+77300669 None:intergenic
CAAGAAGTACACACAAGACA+AGG 0.627309 1_2:-77300387 Msa0094180:intron
GAAAGTCAGAAGCATCCGCA+AGG 0.630629 1_2:-77309865 Msa0094180:CDS
AGATTTGAATCCAACCTTTG+GGG 0.631950 1_2:+77299812 None:intergenic
ACATTTAGTGACCTTATGAG+GGG 0.634986 1_2:-77300005 Msa0094180:three_prime_UTR
AGCAGAAGTCTTCAATACGA+GGG 0.635042 1_2:+77301402 None:intergenic
GATGGACATTGGATCAGTCA+AGG 0.635091 1_2:-77307486 Msa0094180:CDS
CTAGGCTAAGAAAAGGAAGG+TGG 0.643309 1_2:-77302767 Msa0094180:intron
TCAACTCAATGTTTCAACTG+AGG 0.644508 1_2:-77309725 Msa0094180:CDS
CAAGATGTCACTAACAATTG+CGG 0.646916 1_2:-77302974 Msa0094180:CDS
AATTTGTAATGCAAGAACTG+TGG 0.650868 1_2:+77307310 None:intergenic
GGAACCTCATTTGAAACATG+AGG 0.651658 1_2:+77302730 None:intergenic
AAACCTCAGCAACACGCAAG+TGG 0.651996 1_2:+77302220 None:intergenic
ATATATTAGTTACAAATTAG+GGG 0.659537 1_2:+77300138 None:intergenic
TGTCCATCTTGCAAGAAACA+CGG 0.659587 1_2:+77307501 None:intergenic
GTGCGCGAGTTAATCTAACT+GGG 0.661597 1_2:+77309947 None:intergenic
GATTATTGTCTGTGCCACAC+TGG 0.662377 1_2:+77302572 None:intergenic
GAAATGCACCAACCCATGGG+TGG 0.663317 1_2:+77300606 None:intergenic
AAGCAGAAGTCTTCAATACG+AGG 0.666457 1_2:+77301401 None:intergenic
GCAGAAGTCTTCAATACGAG+GGG 0.667503 1_2:+77301403 None:intergenic
CATGTGTACTGTGTCACAGT+AGG 0.668727 1_2:-77300112 Msa0094180:three_prime_UTR
GCTACATCATCCTTCAATGG+TGG 0.671170 1_2:+77309892 None:intergenic
AGGATTAGTGTCAACCAGTG+TGG 0.677691 1_2:-77302586 Msa0094180:CDS
ATCCGTACAAAATACCGACA+AGG 0.678358 1_2:-77307251 Msa0094180:CDS
CAAGCTGTCATATATATCAG+CGG 0.679296 1_2:+77309364 None:intergenic
TAACACATACACAAAAGAGG+AGG 0.680647 1_2:-77301369 Msa0094180:intron
AGGAATGCCAGCAGGATACG+CGG 0.687594 1_2:+77299837 None:intergenic
ACAGTTACCACCAATGAAGG+AGG 0.688615 1_2:-77303098 Msa0094180:CDS
GGACAACACATACACAAGAG+AGG 0.694746 1_2:-77308033 Msa0094180:CDS
CAACACATACACAAGAGAGG+AGG 0.700452 1_2:-77308030 Msa0094180:intron
TGGACAAATGATGAATGCAA+GGG 0.702925 1_2:-77300162 Msa0094180:three_prime_UTR
AGAGCTGCCCTCTTCTTACG+CGG 0.717770 1_2:+77309802 None:intergenic
AATCTATGAGATATACAGTG+AGG 0.733889 1_2:+77308571 None:intergenic
AATCAATGAGATATACAGCG+AGG 0.756631 1_2:+77301606 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAATTAAATATAAAA+GGG + chr1_2:77306358-77306377 None:intergenic 0.0%
!! AATTAAAAATTAAATATAAA+AGG + chr1_2:77306359-77306378 None:intergenic 0.0%
!!! GTTTATTATTTTTTTTTTCT+TGG - chr1_2:77301355-77301374 Msa0094180:intron 10.0%
!! TTATACATTAGTAAAAAATA+TGG + chr1_2:77303711-77303730 None:intergenic 10.0%
!! TAGATAATTAAAGATATTAA+CGG - chr1_2:77303814-77303833 Msa0094180:intron 10.0%
!! CAAAAATAACAAAATTTATT+TGG - chr1_2:77304827-77304846 Msa0094180:intron 10.0%
!!! TATTTATTAAATCTGTTTTT+TGG - chr1_2:77305549-77305568 Msa0094180:intron 10.0%
!!! TGTTTTATTGTTATTATTTT+TGG - chr1_2:77306038-77306057 Msa0094180:intron 10.0%
!! ATTAACATATTAAAAATTCA+AGG - chr1_2:77306147-77306166 Msa0094180:intron 10.0%
!! TTAACATATTAAAAATTCAA+GGG - chr1_2:77306148-77306167 Msa0094180:intron 10.0%
!!! TTGTTAAATTTTATTGTTTT+TGG - chr1_2:77306383-77306402 Msa0094180:intron 10.0%
!!! TTTTTGTATATAATACCATT+GGG + chr1_2:77300499-77300518 None:intergenic 15.0%
!! TATTATATACAAAAACAGAA+AGG - chr1_2:77300504-77300523 Msa0094180:CDS 15.0%
!! TTTATAAAATGCATAACAAT+CGG - chr1_2:77300730-77300749 Msa0094180:CDS 15.0%
!!! ATTAAAAAATACCAGAATTT+TGG - chr1_2:77303339-77303358 Msa0094180:intron 15.0%
!!! TTAAAAAATACCAGAATTTT+GGG - chr1_2:77303340-77303359 Msa0094180:intron 15.0%
!!! AAGATTATTTTTGTTTTCAA+GGG + chr1_2:77303375-77303394 None:intergenic 15.0%
!! AAAAAAACTTTCCTATATTA+AGG + chr1_2:77304038-77304057 None:intergenic 15.0%
!!! AGAAAAAAACATATCTTTTA+AGG - chr1_2:77304085-77304104 Msa0094180:intron 15.0%
!!! GTTTGTCTTTTTAATATTAA+TGG - chr1_2:77304149-77304168 Msa0094180:intron 15.0%
!!! AGTAAGAAATGATTTTTTTT+TGG + chr1_2:77304330-77304349 None:intergenic 15.0%
!! TTACTATAAAGATCTAAATT+GGG - chr1_2:77304345-77304364 Msa0094180:intron 15.0%
!! AAATAGAATGAAAGAATAAA+TGG - chr1_2:77304768-77304787 Msa0094180:intron 15.0%
!! ATAAATCATAGAAAAAATGT+TGG + chr1_2:77305316-77305335 None:intergenic 15.0%
!! ATAAAAGAAAGATAAATAGT+TGG + chr1_2:77305524-77305543 None:intergenic 15.0%
!!! TTTTTTATTAACTTCATTCT+GGG - chr1_2:77305796-77305815 Msa0094180:intron 15.0%
!! TTAAAAGAGGAAAAAAAAAA+TGG - chr1_2:77305863-77305882 Msa0094180:intron 15.0%
!! TAAAAGAGGAAAAAAAAAAT+GGG - chr1_2:77305864-77305883 Msa0094180:intron 15.0%
!!! ATATTTTAAAATAGGAAACT+TGG - chr1_2:77305917-77305936 Msa0094180:intron 15.0%
!!! AAAAACAGAAGTATAAATTA+AGG + chr1_2:77309188-77309207 None:intergenic 15.0%
!! ATATATTAGTTACAAATTAG+GGG + chr1_2:77309589-77309608 None:intergenic 15.0%
!! CATATATTAGTTACAAATTA+GGG + chr1_2:77309590-77309609 None:intergenic 15.0%
!! TCATATATTAGTTACAAATT+AGG + chr1_2:77309591-77309610 None:intergenic 15.0%
!! CTCATATATTACAAAAATGT+TGG + chr1_2:77300140-77300159 None:intergenic 20.0%
!! TCTTGTAATTTCAACATAAA+GGG + chr1_2:77300441-77300460 None:intergenic 20.0%
!! TTCTTGTAATTTCAACATAA+AGG + chr1_2:77300442-77300461 None:intergenic 20.0%
!!! TTTTGTATATAATACCATTG+GGG + chr1_2:77300498-77300517 None:intergenic 20.0%
!!! GTTTTTGTATATAATACCAT+TGG + chr1_2:77300500-77300519 None:intergenic 20.0%
!!! TAAGCATAATGGAATTTTTT+TGG + chr1_2:77301406-77301425 None:intergenic 20.0%
!! CACATAATTTATGAATATCT+AGG + chr1_2:77301773-77301792 None:intergenic 20.0%
!! TAGTCTTCATTAAAAAGAAA+AGG - chr1_2:77301906-77301925 Msa0094180:intron 20.0%
!! ATATATCAGTTACAAATTAG+GGG + chr1_2:77302687-77302706 None:intergenic 20.0%
!! CATATATCAGTTACAAATTA+GGG + chr1_2:77302688-77302707 None:intergenic 20.0%
!! TCATATATCAGTTACAAATT+AGG + chr1_2:77302689-77302708 None:intergenic 20.0%
!!! ATTTTATGACCTATTTGTTT+AGG - chr1_2:77302818-77302837 Msa0094180:intron 20.0%
!!! TTTTATGACCTATTTGTTTA+GGG - chr1_2:77302819-77302838 Msa0094180:intron 20.0%
!!! TTTTTGCAATAATATTTCAC+TGG - chr1_2:77303034-77303053 Msa0094180:CDS 20.0%
!!! ATAAACATAACAGGATTTTA+TGG + chr1_2:77303306-77303325 None:intergenic 20.0%
!! TAAAATCCTGTTATGTTTAT+AGG - chr1_2:77303306-77303325 Msa0094180:intron 20.0%
!!! AGATTATTTTTGTTTTCAAG+GGG + chr1_2:77303374-77303393 None:intergenic 20.0%
!!! CAAGATTATTTTTGTTTTCA+AGG + chr1_2:77303376-77303395 None:intergenic 20.0%
!!! TATTTGGTTTTTCAAAATCA+TGG - chr1_2:77303428-77303447 Msa0094180:intron 20.0%
!! AAAATATTAGAGACTTAGTT+TGG + chr1_2:77303906-77303925 None:intergenic 20.0%
!!! GTCTCTAATATTTTAAATTG+AGG - chr1_2:77303912-77303931 Msa0094180:intron 20.0%
!! ATCTTTCTAATATAATGAGT+TGG - chr1_2:77303943-77303962 Msa0094180:intron 20.0%
!! TCTTTCTAATATAATGAGTT+GGG - chr1_2:77303944-77303963 Msa0094180:intron 20.0%
!!! GATTTAACATTTTAATACTG+AGG + chr1_2:77303981-77304000 None:intergenic 20.0%
!! AAAAGACAAACATTAAATGA+AGG + chr1_2:77304140-77304159 None:intergenic 20.0%
!! TATTTCGTTCTTATTATAAG+AGG + chr1_2:77304208-77304227 None:intergenic 20.0%
!!! AAGAAATGATTTTTTTTTGG+TGG + chr1_2:77304327-77304346 None:intergenic 20.0%
!! CTTACTATAAAGATCTAAAT+TGG - chr1_2:77304344-77304363 Msa0094180:intron 20.0%
!!! TTTGTTTGACTTTATTGTTA+TGG + chr1_2:77304391-77304410 None:intergenic 20.0%
!! AACAAAATTATTCTCCAAAA+TGG + chr1_2:77304659-77304678 None:intergenic 20.0%
!! AATGAAAGAATAAATGGTTA+AGG - chr1_2:77304774-77304793 Msa0094180:intron 20.0%
!! ATGAAAGAATAAATGGTTAA+GGG - chr1_2:77304775-77304794 Msa0094180:intron 20.0%
!!! ACAAAATTTATTTGGTTTCT+TGG - chr1_2:77304835-77304854 Msa0094180:intron 20.0%
!! ATAATATACTAGTAGTAAGT+AGG + chr1_2:77305219-77305238 None:intergenic 20.0%
!!! ATTGGTTCAAATTTATGTAT+AGG + chr1_2:77305376-77305395 None:intergenic 20.0%
!!! GTTTTTTATTAACTTCATTC+TGG - chr1_2:77305795-77305814 Msa0094180:intron 20.0%
!! TAAAATTGATGAATGCATTA+AGG - chr1_2:77306242-77306261 Msa0094180:intron 20.0%
!! TTTAAACACAGAAAATGTAA+AGG + chr1_2:77306411-77306430 None:intergenic 20.0%
!! AAACAAGAACAATTTGATAT+TGG + chr1_2:77306830-77306849 None:intergenic 20.0%
!!! ATATCAAATTGTTCTTGTTT+TGG - chr1_2:77306830-77306849 Msa0094180:intron 20.0%
!! AAAAAATGACTTTAGTTAGT+TGG - chr1_2:77307313-77307332 Msa0094180:CDS 20.0%
!! AACTAATATAATACACATCA+AGG + chr1_2:77308009-77308028 None:intergenic 20.0%
!!! CTCTTTTTCAATACAATTTT+TGG + chr1_2:77308153-77308172 None:intergenic 20.0%
!! ATGAGCATTATTAAACATAA+TGG + chr1_2:77308255-77308274 None:intergenic 20.0%
!! TAGTCATTAGATTTCATTTA+GGG - chr1_2:77308529-77308548 Msa0094180:CDS 20.0%
!!! CATATTTTTGTAAAGACTAT+TGG + chr1_2:77308775-77308794 None:intergenic 20.0%
!! TTTCTTTGAGTAATTTCATA+AGG + chr1_2:77309159-77309178 None:intergenic 20.0%
!! AGTTATGTTACAAAGTAAAT+AGG + chr1_2:77309434-77309453 None:intergenic 20.0%
!!! AACTTTTGTGTTGCTATTTT+TGG - chr1_2:77300208-77300227 Msa0094180:CDS 25.0%
!!! ACTTTTGTGTTGCTATTTTT+GGG - chr1_2:77300209-77300228 Msa0094180:CDS 25.0%
! TCAATATCAGCATCTATATT+AGG + chr1_2:77300314-77300333 None:intergenic 25.0%
! ATTTCAACATAAAGGGATAT+TGG + chr1_2:77300434-77300453 None:intergenic 25.0%
! TATATAGCCATTGATAAGAA+TGG + chr1_2:77300531-77300550 None:intergenic 25.0%
!! AAGTTGCAAATTTTTCTTAG+GGG + chr1_2:77300585-77300604 None:intergenic 25.0%
!! CAAGTTGCAAATTTTTCTTA+GGG + chr1_2:77300586-77300605 None:intergenic 25.0%
!!! TCAAGTTGCAAATTTTTCTT+AGG + chr1_2:77300587-77300606 None:intergenic 25.0%
! CAGCTGAAAAATAAAATGTT+TGG + chr1_2:77300848-77300867 None:intergenic 25.0%
! ATTCATAGTTTCATAATCTC+TGG - chr1_2:77301290-77301309 Msa0094180:intron 25.0%
! TTGATGTTCACAATATGAAA+AGG - chr1_2:77301326-77301345 Msa0094180:intron 25.0%
! CTTCTTTCATATATGATTGA+AGG - chr1_2:77301618-77301637 Msa0094180:CDS 25.0%
!!! TGTGAAACTTTTGTTATTGT+TGG - chr1_2:77301745-77301764 Msa0094180:intron 25.0%
!!! AGGAACTTTTATGTGTTATT+TGG - chr1_2:77301926-77301945 Msa0094180:intron 25.0%
! TCATCATGATCATAATGTAT+AGG + chr1_2:77302547-77302566 None:intergenic 25.0%
! ATAGACATACAACTTAAGAA+TGG + chr1_2:77302775-77302794 None:intergenic 25.0%
! TTTAAACTATCTTCAAACCA+AGG - chr1_2:77303086-77303105 Msa0094180:CDS 25.0%
!!! AAAAATCTATCAAGTTGAAC+AGG - chr1_2:77303109-77303128 Msa0094180:CDS 25.0%
! CTTTATCCTATAAACATAAC+AGG + chr1_2:77303315-77303334 None:intergenic 25.0%
! CTGTTATGTTTATAGGATAA+AGG - chr1_2:77303313-77303332 Msa0094180:intron 25.0%
! TTGCTGATATTATCATTTGT+CGG - chr1_2:77303393-77303412 Msa0094180:intron 25.0%
!! CTCAATAAACACTAGTTTAA+TGG + chr1_2:77303537-77303556 None:intergenic 25.0%
!! GAAAATTGTCGAATCAATTT+TGG + chr1_2:77303589-77303608 None:intergenic 25.0%
!!! TTTTTTGTCGACACTAAATT+GGG + chr1_2:77303618-77303637 None:intergenic 25.0%
!!! ATTTTTTGTCGACACTAAAT+TGG + chr1_2:77303619-77303638 None:intergenic 25.0%
!!! ATTGGACATGTATTTTGAAA+CGG + chr1_2:77303652-77303671 None:intergenic 25.0%
! CTTTCTAATATAATGAGTTG+GGG - chr1_2:77303945-77303964 Msa0094180:intron 25.0%
! AACAATGCATAAAATATGCA+AGG - chr1_2:77304283-77304302 Msa0094180:intron 25.0%
! TTATAGAAAAGCTAGAAGTT+AGG + chr1_2:77304589-77304608 None:intergenic 25.0%
! AATGGACAAGTATTATGAAA+CGG + chr1_2:77304641-77304660 None:intergenic 25.0%
!! TTCATAATACTTGTCCATTT+TGG - chr1_2:77304642-77304661 Msa0094180:intron 25.0%
! TGTTACATTGAAACTTGAAA+GGG + chr1_2:77304695-77304714 None:intergenic 25.0%
! ATGTTACATTGAAACTTGAA+AGG + chr1_2:77304696-77304715 None:intergenic 25.0%
! TCTCTACAATAAATATGGAA+GGG + chr1_2:77304742-77304761 None:intergenic 25.0%
! TTCTCTCTCTACAATAAATA+TGG + chr1_2:77304747-77304766 None:intergenic 25.0%
!! TTCAAAATACATGTCCATTT+TGG + chr1_2:77304875-77304894 None:intergenic 25.0%
!!! AATGGACATGTATTTTGAAA+CGG - chr1_2:77304876-77304895 Msa0094180:intron 25.0%
! AAAGAAGGAGAATTGATAAA+GGG + chr1_2:77304946-77304965 None:intergenic 25.0%
! TAAAGAAGGAGAATTGATAA+AGG + chr1_2:77304947-77304966 None:intergenic 25.0%
! TAAAAGAGGATTGATAAAGA+AGG + chr1_2:77304961-77304980 None:intergenic 25.0%
! AAAATAGACATAGCTAAAAG+AGG + chr1_2:77304975-77304994 None:intergenic 25.0%
!! TGAGAGAATTGATTTATGTT+TGG + chr1_2:77305081-77305100 None:intergenic 25.0%
! GGATTATTGGAACTTATTTA+TGG + chr1_2:77305198-77305217 None:intergenic 25.0%
!! ATGTCATTTAGTAAACTCAT+GGG - chr1_2:77305247-77305266 Msa0094180:intron 25.0%
! AGGAGTAGTAAAATAAAAGA+TGG + chr1_2:77305274-77305293 None:intergenic 25.0%
! TGATAAAATGAGCTTAAAAG+AGG - chr1_2:77305850-77305869 Msa0094180:intron 25.0%
!!! AGGAAAAAAAAAATGGGTTA+AGG - chr1_2:77305870-77305889 Msa0094180:intron 25.0%
! CATTTCAGCAACATAAAAAT+GGG + chr1_2:77305987-77306006 None:intergenic 25.0%
! TCATTTCAGCAACATAAAAA+TGG + chr1_2:77305988-77306007 None:intergenic 25.0%
!! AATGTTTGGATGTCAAATTT+TGG + chr1_2:77306079-77306098 None:intergenic 25.0%
!!! ATCCAAACATTTTTGTTTCA+TGG - chr1_2:77306088-77306107 Msa0094180:intron 25.0%
! AACCATGAAACAAAAATGTT+TGG + chr1_2:77306093-77306112 None:intergenic 25.0%
! TTCTTTGATGTTACTATTGT+TGG - chr1_2:77306276-77306295 Msa0094180:intron 25.0%
! TCTTTGATGTTACTATTGTT+GGG - chr1_2:77306277-77306296 Msa0094180:intron 25.0%
! TGCAGATAGTAACATAAAAA+TGG - chr1_2:77306332-77306351 Msa0094180:intron 25.0%
! ATATCTTCCTCATAAAAAGA+GGG - chr1_2:77306719-77306738 Msa0094180:intron 25.0%
!!! CTTTTTTATTCCCATACTAA+TGG - chr1_2:77306902-77306921 Msa0094180:intron 25.0%
! ACAATGTACTACAAAAATAG+AGG + chr1_2:77307240-77307259 None:intergenic 25.0%
!! TCTTGAACAGATTTCTTTTA+TGG + chr1_2:77307284-77307303 None:intergenic 25.0%
!!! AACTTAGTTGTGGTTATTTT+TGG - chr1_2:77307339-77307358 Msa0094180:CDS 25.0%
!! TTAAACATAATGGAACACAA+GGG + chr1_2:77308245-77308264 None:intergenic 25.0%
!! ATTAAACATAATGGAACACA+AGG + chr1_2:77308246-77308265 None:intergenic 25.0%
! AAATGAAATCTAATGACTAG+AGG + chr1_2:77308528-77308547 None:intergenic 25.0%
! CTAGTCATTAGATTTCATTT+AGG - chr1_2:77308528-77308547 Msa0094180:CDS 25.0%
!!! TATTCAATGTATTGATTGAC+AGG - chr1_2:77308644-77308663 Msa0094180:intron 25.0%
!! TTTTTGTAAAGACTATTGGA+CGG + chr1_2:77308771-77308790 None:intergenic 25.0%
! CAATTATCTTAGTACATTCT+TGG - chr1_2:77308816-77308835 Msa0094180:CDS 25.0%
! TTTGAGTAATTTCATAAGGA+AGG + chr1_2:77309155-77309174 None:intergenic 25.0%
!! AAACAATGTTCTGAATATGA+TGG - chr1_2:77309542-77309561 Msa0094180:intron 25.0%
! ACTTCTAGCAAAATGAAAAA+AGG - chr1_2:77309963-77309982 Msa0094180:CDS 25.0%
! CTTCTAGCAAAATGAAAAAA+GGG - chr1_2:77309964-77309983 Msa0094180:CDS 25.0%
GCATCTATATTAGGAATATC+CGG + chr1_2:77300305-77300324 None:intergenic 30.0%
TGGTATACACAATAATGACA+GGG + chr1_2:77300414-77300433 None:intergenic 30.0%
TTGGTATACACAATAATGAC+AGG + chr1_2:77300415-77300434 None:intergenic 30.0%
TCAAAGTTCATCACAGTAAA+GGG + chr1_2:77300633-77300652 None:intergenic 30.0%
AAAATGTTTGGCAAACAACA+CGG + chr1_2:77300836-77300855 None:intergenic 30.0%
!! TTATTTTTCAGCTGTCAAGA+AGG - chr1_2:77300854-77300873 Msa0094180:intron 30.0%
ATCTAAACATCAAAGTCAGA+GGG + chr1_2:77301024-77301043 None:intergenic 30.0%
!!! TTGTGTTGAACTTTGTTTTC+AGG - chr1_2:77301093-77301112 Msa0094180:intron 30.0%
AATCTATGAGATATACAGTG+AGG + chr1_2:77301156-77301175 None:intergenic 30.0%
TGAATTAGTAACAAGGATTC+TGG + chr1_2:77301447-77301466 None:intergenic 30.0%
TCCTTGTTACTAATTCAAGA+TGG - chr1_2:77301450-77301469 Msa0094180:intron 30.0%
TCCATCTTGAATTAGTAACA+AGG + chr1_2:77301454-77301473 None:intergenic 30.0%
AATAGAGTTATATGTTGCCA+GGG + chr1_2:77301492-77301511 None:intergenic 30.0%
AAATAGAGTTATATGTTGCC+AGG + chr1_2:77301493-77301512 None:intergenic 30.0%
AAGTACAAATGTCACACTAT+AGG + chr1_2:77301582-77301601 None:intergenic 30.0%
TCATAAATTATGTGACTGAC+AGG - chr1_2:77301779-77301798 Msa0094180:intron 30.0%
!! CTGAGAAAATGTTTTGTTGT+GGG + chr1_2:77301858-77301877 None:intergenic 30.0%
CAATTATCTTAGCACATTCT+TGG - chr1_2:77301960-77301979 Msa0094180:CDS 30.0%
AGTCATACTCAATACAAATC+TGG + chr1_2:77302072-77302091 None:intergenic 30.0%
GAATTAACACTGATGAACTA+TGG - chr1_2:77302162-77302181 Msa0094180:intron 30.0%
AATTTGTAATGCAAGAACTG+TGG + chr1_2:77302417-77302436 None:intergenic 30.0%
!! AACATTGTTTCAGGTAGTTT+TGG + chr1_2:77302612-77302631 None:intergenic 30.0%
CATCTTCAAAACATTGTTTC+AGG + chr1_2:77302621-77302640 None:intergenic 30.0%
ACATACAACTTAAGAATGGT+TGG + chr1_2:77302771-77302790 None:intergenic 30.0%
AATAACTATAAAACTCGCAG+AGG + chr1_2:77302982-77303001 None:intergenic 30.0%
! CAACTTGATAGATTTTTCCT+TGG + chr1_2:77303106-77303125 None:intergenic 30.0%
!!! CAAATATCGCATTTTTTCGA+AGG - chr1_2:77303132-77303151 Msa0094180:CDS 30.0%
!! TTTAACTCTTGGCTTTAAAC+TGG + chr1_2:77303172-77303191 None:intergenic 30.0%
! AACATAACAGGATTTTATGG+TGG + chr1_2:77303303-77303322 None:intergenic 30.0%
TGCTGATATTATCATTTGTC+GGG - chr1_2:77303394-77303413 Msa0094180:intron 30.0%
ATAGTGCACATTGCAAAAAT+TGG + chr1_2:77303670-77303689 None:intergenic 30.0%
TAACGGTCAAAATTATGCAT+TGG - chr1_2:77303831-77303850 Msa0094180:intron 30.0%
!! CTTGGACATGTATTTTGAAA+CGG - chr1_2:77303872-77303891 Msa0094180:intron 30.0%
AACTTTCCTATATTAAGGAC+AGG + chr1_2:77304033-77304052 None:intergenic 30.0%
TGCATAAAATATGCAAGGTT+CGG - chr1_2:77304288-77304307 Msa0094180:intron 30.0%
TATAAAGATCTAAATTGGGC+CGG - chr1_2:77304349-77304368 Msa0094180:intron 30.0%
TGGAGTAAAGATTATCTTTC+CGG + chr1_2:77304371-77304390 None:intergenic 30.0%
TCCATATCTCAAAATCTGTA+GGG - chr1_2:77304423-77304442 Msa0094180:intron 30.0%
!!! TTTTTGGCTAGAATTGCTTT+TGG + chr1_2:77304496-77304515 None:intergenic 30.0%
CTCTCTACAATAAATATGGA+AGG + chr1_2:77304743-77304762 None:intergenic 30.0%
TTACTGCAATTTCTCCAAAA+TGG - chr1_2:77304858-77304877 Msa0094180:intron 30.0%
GGGCAATAAAGGAAAATAAT+AGG + chr1_2:77304926-77304945 None:intergenic 30.0%
GAATTGATAAAGGGCAATAA+AGG + chr1_2:77304937-77304956 None:intergenic 30.0%
CTAGTAGTAAGTAGGATTAT+TGG + chr1_2:77305211-77305230 None:intergenic 30.0%
! CATGTCATTTAGTAAACTCA+TGG - chr1_2:77305246-77305265 Msa0094180:intron 30.0%
ACACTTTGTATACAGTTGAT+TGG + chr1_2:77305394-77305413 None:intergenic 30.0%
! GACTTTTTATCTTCCTTCAA+TGG - chr1_2:77305715-77305734 Msa0094180:intron 30.0%
TTTATTAACTTCATTCTGGG+TGG - chr1_2:77305799-77305818 Msa0094180:intron 30.0%
TTATTAACTTCATTCTGGGT+GGG - chr1_2:77305800-77305819 Msa0094180:intron 30.0%
TTTCTGGGTTATTCTGATTT+GGG - chr1_2:77305823-77305842 Msa0094180:intron 30.0%
! GAAACTTGGACAACATTTTA+AGG - chr1_2:77305931-77305950 Msa0094180:intron 30.0%
GACAAAACAAACAACATACA+TGG + chr1_2:77306016-77306035 None:intergenic 30.0%
TCTATTGTTCTATGTGCATT+TGG - chr1_2:77306173-77306192 Msa0094180:intron 30.0%
! TTGAGTATCCAAAGTTCTTT+TGG - chr1_2:77306501-77306520 Msa0094180:intron 30.0%
CCAAAAATCCAAAAGAACTT+TGG + chr1_2:77306512-77306531 None:intergenic 30.0%
! CCAAAGTTCTTTTGGATTTT+TGG - chr1_2:77306509-77306528 Msa0094180:intron 30.0%
!!! TGAAAGTGCTCTTTTTGAAT+TGG + chr1_2:77306691-77306710 None:intergenic 30.0%
CATATCTTCCTCATAAAAAG+AGG - chr1_2:77306718-77306737 Msa0094180:intron 30.0%
CTTAAATCCAACTGAAATTC+AGG - chr1_2:77306794-77306813 Msa0094180:intron 30.0%
!! TTGGTCTTGAAATGTATTGA+AGG - chr1_2:77306849-77306868 Msa0094180:intron 30.0%
AAGGATTCATATCTCAATAG+TGG - chr1_2:77306868-77306887 Msa0094180:intron 30.0%
!! TTCATATCTCAATAGTGGAT+AGG - chr1_2:77306873-77306892 Msa0094180:intron 30.0%
AGTCTTAGAACCATTAGTAT+GGG + chr1_2:77306915-77306934 None:intergenic 30.0%
! TAGTCTTAGAACCATTAGTA+TGG + chr1_2:77306916-77306935 None:intergenic 30.0%
CTAGCAGTTATAAAAGTAAC+AGG + chr1_2:77306941-77306960 None:intergenic 30.0%
!!! CTGTTACTTTTATAACTGCT+AGG - chr1_2:77306939-77306958 Msa0094180:intron 30.0%
! AGGTAACATTTCTGAACTTT+TGG - chr1_2:77307393-77307412 Msa0094180:intron 30.0%
GACAAACAGCTTAGAATAAA+AGG + chr1_2:77307678-77307697 None:intergenic 30.0%
AACTTGGAAGTTTGAATATG+CGG + chr1_2:77307850-77307869 None:intergenic 30.0%
TCATATTGTTCAGCAAAACT+TGG + chr1_2:77307866-77307885 None:intergenic 30.0%
! TAAACATAATGGAACACAAG+GGG + chr1_2:77308244-77308263 None:intergenic 30.0%
AGATAACACATACACAAAAG+AGG - chr1_2:77308352-77308371 Msa0094180:intron 30.0%
! TGATTATTACTAAAGTGCCA+AGG - chr1_2:77308418-77308437 Msa0094180:intron 30.0%
! AGCAAATAGTTGATATGAAG+AGG + chr1_2:77308700-77308719 None:intergenic 30.0%
TGTACTAAGATAATTGCAAG+AGG + chr1_2:77308812-77308831 None:intergenic 30.0%
AGAAATGCTCAATACAAATC+TGG + chr1_2:77308928-77308947 None:intergenic 30.0%
!! CTCTGCATGTTTTATTCAAT+TGG + chr1_2:77308960-77308979 None:intergenic 30.0%
! AACATTGTTTCAAGCAGTTT+TGG + chr1_2:77309532-77309551 None:intergenic 30.0%
ATACATTTAGTGACCTTATG+AGG - chr1_2:77309717-77309736 Msa0094180:CDS 30.0%
TACATTTAGTGACCTTATGA+GGG - chr1_2:77309718-77309737 Msa0094180:CDS 30.0%
! ATCTGAAATCAAGACATTCT+AGG + chr1_2:77309790-77309809 None:intergenic 30.0%
TAGAATGTCTTGATTTCAGA+TGG - chr1_2:77309789-77309808 Msa0094180:intron 30.0%
TAGATTTGAATCCAACCTTT+GGG + chr1_2:77309916-77309935 None:intergenic 30.0%
CAAAATGAAAAAAGGGATTG+AGG - chr1_2:77309971-77309990 Msa0094180:CDS 30.0%
GGATGTCACTAACATTTATC+AGG - chr1_2:77299948-77299967 Msa0094180:three_prime_UTR 35.0%
!! GTTGAAACATTGAGTTGATC+CGG + chr1_2:77299997-77300016 None:intergenic 35.0%
TCAACTCAATGTTTCAACTG+AGG - chr1_2:77299999-77300018 Msa0094180:three_prime_UTR 35.0%
TGCATTGTCTTCCAAAGAAA+CGG + chr1_2:77300031-77300050 None:intergenic 35.0%
AATGCACCTTCAAATCTGAT+TGG - chr1_2:77300045-77300064 Msa0094180:three_prime_UTR 35.0%
!! CCTTTAGCTTGAGAAATCAA+AGG + chr1_2:77300099-77300118 None:intergenic 35.0%
! CCTTTGATTTCTCAAGCTAA+AGG - chr1_2:77300096-77300115 Msa0094180:three_prime_UTR 35.0%
TTCGGAATCACTATCTTTCT+TGG + chr1_2:77300261-77300280 None:intergenic 35.0%
CAAGCTGTCATATATATCAG+CGG + chr1_2:77300363-77300382 None:intergenic 35.0%
!! ACTCATTTTAACATCCCCAA+TGG - chr1_2:77300481-77300500 Msa0094180:CDS 35.0%
GAAAGGTCCATTCTTATCAA+TGG - chr1_2:77300521-77300540 Msa0094180:intron 35.0%
CTCAAAGTTCATCACAGTAA+AGG + chr1_2:77300634-77300653 None:intergenic 35.0%
AAGGCAAGATCAAAGAGAAA+CGG + chr1_2:77300808-77300827 None:intergenic 35.0%
TGTACTGTTTCCATGAAGTT+AGG + chr1_2:77300886-77300905 None:intergenic 35.0%
TCTAAACATCAAAGTCAGAG+GGG + chr1_2:77301023-77301042 None:intergenic 35.0%
CATCTAAACATCAAAGTCAG+AGG + chr1_2:77301025-77301044 None:intergenic 35.0%
! GTGTCTTTCAATGGAGTTTT+TGG + chr1_2:77301188-77301207 None:intergenic 35.0%
TTGAAGTCTGTGTCTTTCAA+TGG + chr1_2:77301197-77301216 None:intergenic 35.0%
CTTGAATTTGAGAACTTACG+AGG + chr1_2:77301248-77301267 None:intergenic 35.0%
CTCGTAAGTTCTCAAATTCA+AGG - chr1_2:77301246-77301265 Msa0094180:intron 35.0%
GATTTATCTTATTCATCCCC+TGG - chr1_2:77301472-77301491 Msa0094180:intron 35.0%
ATAGAGTTATATGTTGCCAG+GGG + chr1_2:77301491-77301510 None:intergenic 35.0%
TGCTACATTGTAGAACAAGA+AGG + chr1_2:77301523-77301542 None:intergenic 35.0%
GCAGAAATCTTCAACATTGT+TGG + chr1_2:77301663-77301682 None:intergenic 35.0%
TGACTGACAGGTACTAAATA+TGG - chr1_2:77301791-77301810 Msa0094180:intron 35.0%
!! CCTGAGAAAATGTTTTGTTG+TGG + chr1_2:77301859-77301878 None:intergenic 35.0%
! CCACAACAAAACATTTTCTC+AGG - chr1_2:77301856-77301875 Msa0094180:intron 35.0%
! ACATTTTCTCAGGTACTTCT+TGG - chr1_2:77301866-77301885 Msa0094180:intron 35.0%
TGTGCTAAGATAATTGCAAG+AGG + chr1_2:77301956-77301975 None:intergenic 35.0%
TAGCACATTCTTGGTTTCTT+AGG - chr1_2:77301969-77301988 Msa0094180:CDS 35.0%
!!! GTGTCTGCAATTTTTTCAGT+TGG + chr1_2:77302104-77302123 None:intergenic 35.0%
AAAGATAAACACCAACCCAT+GGG + chr1_2:77302266-77302285 None:intergenic 35.0%
TTGAGTGATGTAACTTCGTA+TGG + chr1_2:77302301-77302320 None:intergenic 35.0%
TACGAAGTTACATCACTCAA+AGG - chr1_2:77302301-77302320 Msa0094180:CDS 35.0%
CAAATCTGATGCTTTGTAAG+AGG + chr1_2:77302390-77302409 None:intergenic 35.0%
TTATGTTTCCTCAGAAATCC+TGG - chr1_2:77302520-77302539 Msa0094180:CDS 35.0%
TGATCATAATGTATAGGACC+AGG + chr1_2:77302541-77302560 None:intergenic 35.0%
GAAGATGAAGATGAAGATGA+TGG - chr1_2:77302634-77302653 Msa0094180:intron 35.0%
ACAACTTAAGAATGGTTGGA+GGG + chr1_2:77302767-77302786 None:intergenic 35.0%
TACAACTTAAGAATGGTTGG+AGG + chr1_2:77302768-77302787 None:intergenic 35.0%
AGCAAGAACCCTAAACAAAT+AGG + chr1_2:77302830-77302849 None:intergenic 35.0%
GAATGAATCCAAGACATTCT+TGG + chr1_2:77302895-77302914 None:intergenic 35.0%
!!! TCTCGAACTGTTTTAACTCT+TGG + chr1_2:77303183-77303202 None:intergenic 35.0%
CGAGATCCCATATTCAAATT+CGG - chr1_2:77303198-77303217 Msa0094180:intron 35.0%
CTTCGTCCGAATTTGAATAT+GGG + chr1_2:77303207-77303226 None:intergenic 35.0%
GCTGATATTATCATTTGTCG+GGG - chr1_2:77303395-77303414 Msa0094180:intron 35.0%
!!! GACATGTATTTTGAAACGGA+GGG + chr1_2:77303876-77303895 None:intergenic 35.0%
!!! GACATGTATTTTGAAACGGA+TGG - chr1_2:77303876-77303895 Msa0094180:intron 35.0%
TTCCTATATTAAGGACAGGA+GGG + chr1_2:77304029-77304048 None:intergenic 35.0%
TTTCCTATATTAAGGACAGG+AGG + chr1_2:77304030-77304049 None:intergenic 35.0%
GCATAAAATATGCAAGGTTC+GGG - chr1_2:77304289-77304308 Msa0094180:intron 35.0%
CTCCATATCTCAAAATCTGT+AGG - chr1_2:77304422-77304441 Msa0094180:intron 35.0%
!! CAAACCAAACACGTTGTTTT+TGG + chr1_2:77304512-77304531 None:intergenic 35.0%
CAAAAACAACGTGTTTGGTT+TGG - chr1_2:77304510-77304529 Msa0094180:intron 35.0%
AGTTAGGATTTGTAGCTTCA+TGG + chr1_2:77304573-77304592 None:intergenic 35.0%
!!! GACATGTATTTTGAAACGGA+GGG - chr1_2:77303876-77303895 Msa0094180:intron 35.0%
! GATAGTCTCTTGATAACACT+AGG + chr1_2:77305294-77305313 None:intergenic 35.0%
TTATCTTCCTTCAATGGAAC+TGG - chr1_2:77305721-77305740 Msa0094180:intron 35.0%
! GTTTCTGGGTTATTCTGATT+TGG - chr1_2:77305822-77305841 Msa0094180:intron 35.0%
TCTATGTGCATTTGGAAACA+TGG - chr1_2:77306181-77306200 Msa0094180:intron 35.0%
TGTGATTGCTTCAAACATCA+AGG - chr1_2:77306212-77306231 Msa0094180:intron 35.0%
GAACTTTGGATACTCAATCT+TGG + chr1_2:77306498-77306517 None:intergenic 35.0%
! TTTTGGATCTTGTAGAGATG+AGG - chr1_2:77306526-77306545 Msa0094180:intron 35.0%
!!! CTTTTTGAATTGGCTCTAAG+TGG + chr1_2:77306681-77306700 None:intergenic 35.0%
! AGAATTGCCCTCTTTTTATG+AGG + chr1_2:77306729-77306748 None:intergenic 35.0%
CAAGATGTCACTAACAATTG+CGG - chr1_2:77306750-77306769 Msa0094180:intron 35.0%
ATTGCGGCGTAAATACAAAA+AGG - chr1_2:77306766-77306785 Msa0094180:intron 35.0%
TATGCAACCTGAATTTCAGT+TGG + chr1_2:77306804-77306823 None:intergenic 35.0%
ATAACTGCTAGGCTAAGAAA+AGG - chr1_2:77306950-77306969 Msa0094180:intron 35.0%
TCAACCTCATGTTTCAAATG+AGG - chr1_2:77306990-77307009 Msa0094180:intron 35.0%
ATATAAGCACCTGACATCTT+CGG + chr1_2:77307094-77307113 None:intergenic 35.0%
TGTCAGGTGCTTATATGATT+TGG - chr1_2:77307098-77307117 Msa0094180:CDS 35.0%
! TAGTTGGTGTAACTTAGTTG+TGG - chr1_2:77307329-77307348 Msa0094180:CDS 35.0%
TTCAGAAATGTTACCTCTCT+TGG + chr1_2:77307389-77307408 None:intergenic 35.0%
CATATATATCAGCAGCATAG+TGG + chr1_2:77307483-77307502 None:intergenic 35.0%
TGGTAGAGACAATAATGACA+GGG + chr1_2:77307542-77307561 None:intergenic 35.0%
TTGGTAGAGACAATAATGAC+AGG + chr1_2:77307543-77307562 None:intergenic 35.0%
!! TCTCTACCAATGTTGCTTTA+TGG - chr1_2:77307553-77307572 Msa0094180:CDS 35.0%
TATGTGCCATAAAGCAACAT+TGG + chr1_2:77307562-77307581 None:intergenic 35.0%
GCACATAGTTATGAAATGCA+TGG - chr1_2:77307575-77307594 Msa0094180:CDS 35.0%
!!! CATTTTTTCAGCTGTCAAGA+AGG - chr1_2:77307706-77307725 Msa0094180:intron 35.0%
GTTTCCATGAAGTTAGGATA+AGG + chr1_2:77307732-77307751 None:intergenic 35.0%
TGTACTGTTTCCATGAAGTT+AGG + chr1_2:77300886-77300905 None:intergenic 35.0%
TGAACACGAATTCAACACAT+GGG + chr1_2:77308059-77308078 None:intergenic 35.0%
AATCAATGAGATATACAGCG+AGG + chr1_2:77308121-77308140 None:intergenic 35.0%
TCGCTGTATATCTCATTGAT+TGG - chr1_2:77308120-77308139 Msa0094180:intron 35.0%
TAACACATACACAAAAGAGG+AGG - chr1_2:77308355-77308374 Msa0094180:intron 35.0%
CTGAAAGTAGCAGTTTCATA+TGG - chr1_2:77308457-77308476 Msa0094180:intron 35.0%
CTTTGTAATGTCAGAGTATG+TGG - chr1_2:77308595-77308614 Msa0094180:CDS 35.0%
TGATTGACAGGTAGTAAAAC+TGG - chr1_2:77308656-77308675 Msa0094180:intron 35.0%
TAGTACATTCTTGGTTTCGT+AGG - chr1_2:77308825-77308844 Msa0094180:CDS 35.0%
! GATCGATCTTTTTACCTTGT+AGG + chr1_2:77308876-77308895 None:intergenic 35.0%
ACAAGGTAAAAAGATCGATC+TGG - chr1_2:77308876-77308895 Msa0094180:intron 35.0%
CAAGGTAAAAAGATCGATCT+GGG - chr1_2:77308877-77308896 Msa0094180:intron 35.0%
AATACAAATCTGGCATGTCA+TGG + chr1_2:77308918-77308937 None:intergenic 35.0%
GAACTAACACTGTTGAACTA+TGG - chr1_2:77309020-77309039 Msa0094180:intron 35.0%
CAAATCTGATGCTTTGTAAG+AGG + chr1_2:77302390-77302409 None:intergenic 35.0%
AAGACAAGGTATGTCAGAAA+GGG - chr1_2:77309351-77309370 Msa0094180:intron 35.0%
TTTGTTTGTGTGTAGCTCAA+TGG - chr1_2:77309487-77309506 Msa0094180:CDS 35.0%
ATGGACAAATGATGAATGCA+AGG - chr1_2:77309561-77309580 Msa0094180:intron 35.0%
TGGACAAATGATGAATGCAA+GGG - chr1_2:77309562-77309581 Msa0094180:intron 35.0%
ACATTTAGTGACCTTATGAG+GGG - chr1_2:77309719-77309738 Msa0094180:CDS 35.0%
AGATTTGAATCCAACCTTTG+GGG + chr1_2:77309915-77309934 None:intergenic 35.0%
CTAGATTTGAATCCAACCTT+TGG + chr1_2:77309917-77309936 None:intergenic 35.0%
CAAAGGTTGGATTCAAATCT+AGG - chr1_2:77309915-77309934 Msa0094180:CDS 35.0%
TGTGCTACATCATCCTTCAA+TGG + chr1_2:77299838-77299857 None:intergenic 40.0%
AGAGACTGCTCTTTCTGAAT+TGG + chr1_2:77299887-77299906 None:intergenic 40.0%
TTGTCTTCCAAAGAAACGGA+TGG + chr1_2:77300027-77300046 None:intergenic 40.0%
AAAGAGAAACGGTTGCAGAA+AGG + chr1_2:77300797-77300816 None:intergenic 40.0%
GTTTCCATGAAGTTAGGATG+AGG + chr1_2:77300880-77300899 None:intergenic 40.0%
!! ACTGATTGATTGGCTTGTAG+AGG - chr1_2:77300936-77300955 Msa0094180:intron 40.0%
ACTATGAATGAGAACACGAG+CGG + chr1_2:77301279-77301298 None:intergenic 40.0%
TCTTCTCAGCGTAAGCATAA+TGG + chr1_2:77301417-77301436 None:intergenic 40.0%
TGAAGATTTCTGCGTCATGA+CGG - chr1_2:77301670-77301689 Msa0094180:intron 40.0%
CACATTCTTGGTTTCTTAGG+AGG - chr1_2:77301972-77301991 Msa0094180:CDS 40.0%
TCAAGTAAACAGCATTGCCA+CGG + chr1_2:77302042-77302061 None:intergenic 40.0%
! GGAGTACTTGGCAAATTATC+TGG - chr1_2:77302137-77302156 Msa0094180:intron 40.0%
TGTCCATCTTGCAAGAAACA+CGG + chr1_2:77302226-77302245 None:intergenic 40.0%
GTTTCTTGCAAGATGGACAT+TGG - chr1_2:77302227-77302246 Msa0094180:CDS 40.0%
GAAAGATAAACACCAACCCA+TGG + chr1_2:77302267-77302286 None:intergenic 40.0%
GTGATGTAACTTCGTATGGA+AGG + chr1_2:77302297-77302316 None:intergenic 40.0%
ATCCGTACAAAATACCGACA+AGG - chr1_2:77302473-77302492 Msa0094180:intron 40.0%
! TGCCTTGTCGGTATTTTGTA+CGG + chr1_2:77302478-77302497 None:intergenic 40.0%
TACAAAATACCGACAAGGCA+AGG - chr1_2:77302478-77302497 Msa0094180:intron 40.0%
ATGATCTGTACAAGTCACAG+AGG - chr1_2:77302708-77302727 Msa0094180:intron 40.0%
TGATCTGTACAAGTCACAGA+GGG - chr1_2:77302709-77302728 Msa0094180:CDS 40.0%
! TGTTTAGGGTTCTTGCTTAG+TGG - chr1_2:77302833-77302852 Msa0094180:intron 40.0%
CTTGGCAAAATGCTTCATTC+TGG + chr1_2:77302877-77302896 None:intergenic 40.0%
! GCATTTTGCCAAGAATGTCT+TGG - chr1_2:77302884-77302903 Msa0094180:intron 40.0%
CCTTCGTCCGAATTTGAATA+TGG + chr1_2:77303208-77303227 None:intergenic 40.0%
CCATATTCAAATTCGGACGA+AGG - chr1_2:77303205-77303224 Msa0094180:intron 40.0%
!! TCGGGGTATTGTACTCTATT+TGG - chr1_2:77303412-77303431 Msa0094180:intron 40.0%
!! TTGATTCGACAATTTTCCCG+CGG - chr1_2:77303592-77303611 Msa0094180:intron 40.0%
!!! GGACATGTATTTTGAAACGG+AGG + chr1_2:77303875-77303894 None:intergenic 40.0%
! ATGCATTGGCATATGTGAAG+TGG - chr1_2:77303845-77303864 Msa0094180:intron 40.0%
CATATGTGAAGTGGTTGACT+TGG - chr1_2:77303854-77303873 Msa0094180:intron 40.0%
TATTAAGGACAGGAGGGATA+GGG + chr1_2:77304023-77304042 None:intergenic 40.0%
ATATTAAGGACAGGAGGGAT+AGG + chr1_2:77304024-77304043 None:intergenic 40.0%
ATCCCTCCTGTCCTTAATAT+AGG - chr1_2:77304024-77304043 Msa0094180:intron 40.0%
!!! GCCCTACAGATTTTGAGATA+TGG + chr1_2:77304427-77304446 None:intergenic 40.0%
!! GTAGAGAATTGCTTTTGGCT+GGG + chr1_2:77304469-77304488 None:intergenic 40.0%
!! TGTAGAGAATTGCTTTTGGC+TGG + chr1_2:77304470-77304489 None:intergenic 40.0%
! GCACTGTAGAGAATTGCTTT+TGG + chr1_2:77304474-77304493 None:intergenic 40.0%
CTAGCCAAAAACAACGTGTT+TGG - chr1_2:77304505-77304524 Msa0094180:intron 40.0%
!! TCATGGAGAATTGCTTTTGG+AGG + chr1_2:77304556-77304575 None:intergenic 40.0%
! GCTTCATGGAGAATTGCTTT+TGG + chr1_2:77304559-77304578 None:intergenic 40.0%
GGACAAGTATTATGAAACGG+AGG + chr1_2:77304638-77304657 None:intergenic 40.0%
!!! GGACATGTATTTTGAAACGG+AGG - chr1_2:77303875-77303894 Msa0094180:intron 40.0%
AGTGAGATTACGTGTGTGTT+TGG + chr1_2:77305173-77305192 None:intergenic 40.0%
GTGAAAGCGGGATAGTTATT+TGG + chr1_2:77305594-77305613 None:intergenic 40.0%
TTCTTCACCAGTTCCATTGA+AGG + chr1_2:77305731-77305750 None:intergenic 40.0%
AAGTTTGCAGCATAGATCTC+AGG - chr1_2:77305749-77305768 Msa0094180:intron 40.0%
! TTTGAAACATGAGGTTGAGC+AGG + chr1_2:77306988-77307007 None:intergenic 40.0%
! GGAACCTCATTTGAAACATG+AGG + chr1_2:77306997-77307016 None:intergenic 40.0%
!!! GGTTTTGAGTCAGCTATGAA+CGG + chr1_2:77307039-77307058 None:intergenic 40.0%
! GTTCATAGCTGACTCAAAAC+CGG - chr1_2:77307038-77307057 Msa0094180:intron 40.0%
TTAGATCATCCGAAGATGTC+AGG - chr1_2:77307082-77307101 Msa0094180:intron 40.0%
TGGTTGACACTAATCCTAAG+AGG + chr1_2:77307135-77307154 None:intergenic 40.0%
AAGCAGATATTCTAGACGTC+TGG + chr1_2:77307188-77307207 None:intergenic 40.0%
! AGACGTCTAGAATATCTGCT+TGG - chr1_2:77307187-77307206 Msa0094180:intron 40.0%
!! CCTTTCTTTTGAGAACTCGA+AGG + chr1_2:77307213-77307232 None:intergenic 40.0%
! CCTTCGAGTTCTCAAAAGAA+AGG - chr1_2:77307210-77307229 Msa0094180:intron 40.0%
! AAGGCCTTATCCTAACTTCA+TGG - chr1_2:77307725-77307744 Msa0094180:CDS 40.0%
CTGAACACGAATTCAACACA+TGG + chr1_2:77308060-77308079 None:intergenic 40.0%
CATGTGTTGAATTCGTGTTC+AGG - chr1_2:77308058-77308077 Msa0094180:CDS 40.0%
! AATTCGTGTTCAGGTTTCTG+AGG - chr1_2:77308067-77308086 Msa0094180:CDS 40.0%
! ATTCGTGTTCAGGTTTCTGA+GGG - chr1_2:77308068-77308087 Msa0094180:CDS 40.0%
AGCAGAAGTCTTCAATACGA+GGG + chr1_2:77308325-77308344 None:intergenic 40.0%
AAGCAGAAGTCTTCAATACG+AGG + chr1_2:77308326-77308345 None:intergenic 40.0%
GTTTCGATGTATGCTTTCCT+TGG + chr1_2:77308438-77308457 None:intergenic 40.0%
!! CTGAGGAAAGTTTTGGTAGT+AGG + chr1_2:77308723-77308742 None:intergenic 40.0%
CTACTACCAAAACTTTCCTC+AGG - chr1_2:77308721-77308740 Msa0094180:intron 40.0%
ACTATTGGACGGTAGAAGAA+AGG + chr1_2:77308760-77308779 None:intergenic 40.0%
TACATTCTTGGTTTCGTAGG+AGG - chr1_2:77308828-77308847 Msa0094180:CDS 40.0%
AAGTACTCCAACTCAATGCT+AGG + chr1_2:77308984-77309003 None:intergenic 40.0%
! GGAGTACTTGACAAATTACC+TGG - chr1_2:77308995-77309014 Msa0094180:intron 40.0%
ATGCAGCAATCATAGAAGGA+AGG + chr1_2:77302200-77302219 None:intergenic 40.0%
TCCTTCTATGATTGCTGCAT+CGG - chr1_2:77302200-77302219 Msa0094180:intron 40.0%
AAAGAAATGCACCAACCCAT+GGG + chr1_2:77309124-77309143 None:intergenic 40.0%
TGTCTTGTGTGTACTTCTTG+CGG + chr1_2:77309337-77309356 None:intergenic 40.0%
! CAAGAAGTACACACAAGACA+AGG - chr1_2:77309337-77309356 Msa0094180:intron 40.0%
CAAGACAAGGTATGTCAGAA+AGG - chr1_2:77309350-77309369 Msa0094180:intron 40.0%
ATAAGCAAGAACCCCTCATA+AGG + chr1_2:77309733-77309752 None:intergenic 40.0%
!! AAGAGTGTCAGTTCGAAAGC+TGG - chr1_2:77299748-77299767 Msa0094180:three_prime_UTR 45.0%
GTGCGCGAGTTAATCTAACT+GGG + chr1_2:77299780-77299799 None:intergenic 45.0%
!! GTTGCTGCTTTAAGTGCAAC+AGG - chr1_2:77299802-77299821 Msa0094180:three_prime_UTR 45.0%
GCTACATCATCCTTCAATGG+TGG + chr1_2:77299835-77299854 None:intergenic 45.0%
! CTTTCTGAATTGGTGCCTTG+CGG + chr1_2:77299877-77299896 None:intergenic 45.0%
AGAGCAGTCTCTGATGATAC+AGG - chr1_2:77299895-77299914 Msa0094180:three_prime_UTR 45.0%
GAAAACAAAGCTGACCAAGC+CGG - chr1_2:77299975-77299994 Msa0094180:three_prime_UTR 45.0%
!! AACATTGAGTTGATCCGGCT+TGG + chr1_2:77299992-77300011 None:intergenic 45.0%
TGAGGTTCCATCCGTTTCTT+TGG - chr1_2:77300017-77300036 Msa0094180:three_prime_UTR 45.0%
GCACCTTCAAATCTGATTGG+TGG - chr1_2:77300048-77300067 Msa0094180:three_prime_UTR 45.0%
TGGCCACCAATCAGATTTGA+AGG + chr1_2:77300054-77300073 None:intergenic 45.0%
GAAATCAAAGGCTGAGCAGA+TGG + chr1_2:77300087-77300106 None:intergenic 45.0%
TTAGGAATATCCGGACCCTT+GGG + chr1_2:77300296-77300315 None:intergenic 45.0%
ATTAGGAATATCCGGACCCT+TGG + chr1_2:77300297-77300316 None:intergenic 45.0%
GCATAGAAGCTGCATAGTTG+AGG + chr1_2:77300341-77300360 None:intergenic 45.0%
GGCAAACAACACGGCATAAA+AGG + chr1_2:77300827-77300846 None:intergenic 45.0%
AAGGCCTCATCCTAACTTCA+TGG - chr1_2:77300873-77300892 Msa0094180:CDS 45.0%
ATCAATCAGTATCGCACGCA+TGG + chr1_2:77300926-77300945 None:intergenic 45.0%
! TGCGTGCGATACTGATTGAT+TGG - chr1_2:77300926-77300945 Msa0094180:intron 45.0%
AAAGTCAGAGGGGAATCAGA+AGG + chr1_2:77301013-77301032 None:intergenic 45.0%
AGACACAGACTTCAACTGCT+AGG - chr1_2:77301202-77301221 Msa0094180:intron 45.0%
GGACAACACATACACAAGAG+AGG - chr1_2:77301691-77301710 Msa0094180:intron 45.0%
CAACACATACACAAGAGAGG+AGG - chr1_2:77301694-77301713 Msa0094180:intron 45.0%
! CACGGATCAATCTTTTCACC+TGG + chr1_2:77302024-77302043 None:intergenic 45.0%
CAGGTGAAAAGATTGATCCG+TGG - chr1_2:77302022-77302041 Msa0094180:intron 45.0%
AAGTACTCCAACTCAACGCT+AGG + chr1_2:77302126-77302145 None:intergenic 45.0%
!! TAGCGTTGAGTTGGAGTACT+TGG - chr1_2:77302125-77302144 Msa0094180:intron 45.0%
GCAGATGCAGCAATCATAGA+AGG + chr1_2:77302204-77302223 None:intergenic 45.0%
GATGGACATTGGATCAGTCA+AGG - chr1_2:77302238-77302257 Msa0094180:CDS 45.0%
GAGGCATAGTGTTCAAGAGT+TGG + chr1_2:77302371-77302390 None:intergenic 45.0%
TTGTACGGATCGCAGGTAAA+TGG + chr1_2:77302463-77302482 None:intergenic 45.0%
AATACCGACAAGGCAAGGTA+AGG - chr1_2:77302483-77302502 Msa0094180:intron 45.0%
GTATAGGACCAGGATTTCTG+AGG + chr1_2:77302531-77302550 None:intergenic 45.0%
!! ATGATGGACACGTGAATGCA+AGG - chr1_2:77302650-77302669 Msa0094180:intron 45.0%
! TGATGGACACGTGAATGCAA+GGG - chr1_2:77302651-77302670 Msa0094180:intron 45.0%
GGATGTGTCTCCCAAAATTC+TGG + chr1_2:77303353-77303372 None:intergenic 45.0%
ATTAAGGACAGGAGGGATAG+GGG + chr1_2:77304022-77304041 None:intergenic 45.0%
CAAAATCTGTAGGGCCTGTT+TGG - chr1_2:77304432-77304451 Msa0094180:intron 45.0%
AGTGAGTGAGTGAGTGAAAG+CGG + chr1_2:77305607-77305626 None:intergenic 45.0%
! TTCATTCTGGGTGGGTTTCT+GGG - chr1_2:77305808-77305827 Msa0094180:intron 45.0%
!! AAGAGTGTCACTCTGAAAGC+TGG - chr1_2:77306549-77306568 Msa0094180:intron 45.0%
!! GCTGTGGCTTTAAGTACAAC+TGG - chr1_2:77306603-77306622 Msa0094180:intron 45.0%
TGGACAGTTACCACCAATGA+AGG - chr1_2:77306623-77306642 Msa0094180:intron 45.0%
ACAGTTACCACCAATGAAGG+AGG - chr1_2:77306626-77306645 Msa0094180:intron 45.0%
CTGCTAGGCTAAGAAAAGGA+AGG - chr1_2:77306954-77306973 Msa0094180:intron 45.0%
CTAGGCTAAGAAAAGGAAGG+TGG - chr1_2:77306957-77306976 Msa0094180:intron 45.0%
TTTGAGTCAGCTATGAACGG+TGG + chr1_2:77307036-77307055 None:intergenic 45.0%
CTCAAAACCGGTGAGTTCAA+TGG - chr1_2:77307050-77307069 Msa0094180:intron 45.0%
CGCATTTCCATTGAACTCAC+CGG + chr1_2:77307060-77307079 None:intergenic 45.0%
CGGTGAGTTCAATGGAAATG+CGG - chr1_2:77307058-77307077 Msa0094180:intron 45.0%
TGGAAGACAATGCACCTCTT+AGG - chr1_2:77307118-77307137 Msa0094180:CDS 45.0%
! AGGATTAGTGTCAACCAGTG+TGG - chr1_2:77307138-77307157 Msa0094180:intron 45.0%
GATTATTGTCTGTGCCACAC+TGG + chr1_2:77307155-77307174 None:intergenic 45.0%
CAAATTGTTGCAGCCAAGAG+AGG - chr1_2:77307373-77307392 Msa0094180:intron 45.0%
! TGCGTGCAATACTGGTTGAT+TGG - chr1_2:77307778-77307797 Msa0094180:intron 45.0%
!! ACTGGTTGATTGGCTTGTTG+AGG - chr1_2:77307788-77307807 Msa0094180:intron 45.0%
AAAAGAGAGACTTCAGCTGC+TGG - chr1_2:77308166-77308185 Msa0094180:intron 45.0%
AAAGAGAGACTTCAGCTGCT+GGG - chr1_2:77308167-77308186 Msa0094180:intron 45.0%
CTTGGAGTTGAGAACTTACG+AGG + chr1_2:77308213-77308232 None:intergenic 45.0%
CTCGTAAGTTCTCAACTCCA+AGG - chr1_2:77308211-77308230 Msa0094180:intron 45.0%
GTTCTCAACTCCAAGGAAGT+TGG - chr1_2:77308218-77308237 Msa0094180:intron 45.0%
GCAGAAGTCTTCAATACGAG+GGG + chr1_2:77308324-77308343 None:intergenic 45.0%
!! GAAGCACCTGAGGAAAGTTT+TGG + chr1_2:77308730-77308749 None:intergenic 45.0%
TCAACAGTGTTAGTTCAGCC+AGG + chr1_2:77309016-77309035 None:intergenic 45.0%
TGTCCATCTTGCCAGAAACA+AGG + chr1_2:77309084-77309103 None:intergenic 45.0%
GAAAGAAATGCACCAACCCA+TGG + chr1_2:77309125-77309144 None:intergenic 45.0%
GAGGCATAGTGTTCAAGAGT+TGG + chr1_2:77302371-77302390 None:intergenic 45.0%
TTGTGTGTACTTCTTGCGGA+TGG + chr1_2:77309333-77309352 None:intergenic 45.0%
CATGTGTACTGTGTCACAGT+AGG - chr1_2:77309612-77309631 Msa0094180:intron 45.0%
! TTTTTAACCGCGTATCCTGC+TGG - chr1_2:77309880-77309899 Msa0094180:CDS 45.0%
!!! TTTATTATTTTTTTTTTCTT+GGG - chr1_2:77301356-77301375 Msa0094180:intron 5.0%
!!! TTTTTTTTTAAAAAACAAAT+TGG - chr1_2:77304051-77304070 Msa0094180:intron 5.0%
!!! TTTTATACATATTTTAAAAT+AGG - chr1_2:77305909-77305928 Msa0094180:intron 5.0%
TGTCAGTTCGAAAGCTGGAG+AGG - chr1_2:77299753-77299772 Msa0094180:three_prime_UTR 50.0%
CGTGCGCGAGTTAATCTAAC+TGG + chr1_2:77299781-77299800 None:intergenic 50.0%
AGGAGAGTTGCCACCATTGA+AGG - chr1_2:77299822-77299841 Msa0094180:three_prime_UTR 50.0%
!! GAAAGTCAGAAGCATCCGCA+AGG - chr1_2:77299859-77299878 Msa0094180:three_prime_UTR 50.0%
TAAGAAGAGGGCAGCTCTTG+AGG - chr1_2:77299927-77299946 Msa0094180:three_prime_UTR 50.0%
GAGCAGATGGTTCAGATGTC+TGG + chr1_2:77300074-77300093 None:intergenic 50.0%
CTTGGGCGCATTCAGAAGTT+CGG + chr1_2:77300279-77300298 None:intergenic 50.0%
GAACTTCTGAATGCGCCCAA+GGG - chr1_2:77300278-77300297 Msa0094180:intron 50.0%
TGACAGCTTGCGTATTGCTG+AGG - chr1_2:77300373-77300392 Msa0094180:intron 50.0%
AGCAGCACAAGCTTCATACC+AGG - chr1_2:77302003-77302022 Msa0094180:CDS 50.0%
CTGCCGTGTTTCTTGCAAGA+TGG - chr1_2:77302220-77302239 Msa0094180:intron 50.0%
! CGGTATTTTGTACGGATCGC+AGG + chr1_2:77302470-77302489 None:intergenic 50.0%
TGTGCCTTACCTTGCCTTGT+CGG + chr1_2:77302490-77302509 None:intergenic 50.0%
GTGAGTGAGTGAGTGAAAGC+GGG + chr1_2:77305606-77305625 None:intergenic 50.0%
! CTTCATTCTGGGTGGGTTTC+TGG - chr1_2:77305807-77305826 Msa0094180:intron 50.0%
! TGTCACTCTGAAAGCTGGAG+AGG - chr1_2:77306554-77306573 Msa0094180:intron 50.0%
!! ATTGACTCGTGCTCAAGCTG+TGG - chr1_2:77306587-77306606 Msa0094180:intron 50.0%
TGCTTCTGATCCTGAGTTCC+TGG + chr1_2:77306657-77306676 None:intergenic 50.0%
GCATCTATGTCAGCGACATC+TGG + chr1_2:77307433-77307452 None:intergenic 50.0%
GCATAGTGGCTGCATAGTTG+AGG + chr1_2:77307469-77307488 None:intergenic 50.0%
AAACCTCAGCAACACGCAAG+TGG + chr1_2:77307507-77307526 None:intergenic 50.0%
TCCAAGCATGCGTGCAATAC+TGG - chr1_2:77307770-77307789 Msa0094180:intron 50.0%
ACCAGTATTGCACGCATGCT+TGG + chr1_2:77307774-77307793 None:intergenic 50.0%
TCGTAGGAGGTTTCTTCGAG+CGG - chr1_2:77308841-77308860 Msa0094180:CDS 50.0%
! GCAGAGACCTAGCATTGAGT+TGG - chr1_2:77308974-77308993 Msa0094180:intron 50.0%
GCCGATGCAGCAATCATAGA+AGG + chr1_2:77309062-77309081 None:intergenic 50.0%
TAGATCAGTCAAGCCACCCA+TGG - chr1_2:77309105-77309124 Msa0094180:intron 50.0%
AGATCAGTCAAGCCACCCAT+GGG - chr1_2:77309106-77309125 Msa0094180:intron 50.0%
TCTTGCGGATGGAGGCTAAA+GGG + chr1_2:77309322-77309341 None:intergenic 50.0%
TTCTTGCGGATGGAGGCTAA+AGG + chr1_2:77309323-77309342 None:intergenic 50.0%
TGTGTACTTCTTGCGGATGG+AGG + chr1_2:77309330-77309349 None:intergenic 50.0%
!! TGAATCCAACCTTTGGGGTC+AGG + chr1_2:77309910-77309929 None:intergenic 50.0%
AGGCCTTCCGCGTAAGAAGA+GGG - chr1_2:77299915-77299934 Msa0094180:three_prime_UTR 55.0%
AGAGCTGCCCTCTTCTTACG+CGG + chr1_2:77299925-77299944 None:intergenic 55.0%
CGAACTTCTGAATGCGCCCA+AGG - chr1_2:77300277-77300296 Msa0094180:intron 55.0%
ATCAGTATCGCACGCATGGC+TGG + chr1_2:77300922-77300941 None:intergenic 55.0%
! GCAGACACCTAGCGTTGAGT+TGG - chr1_2:77302116-77302135 Msa0094180:intron 55.0%
! TGGATCAGTCAAGGCACCCA+TGG - chr1_2:77302247-77302266 Msa0094180:CDS 55.0%
! GGATCAGTCAAGGCACCCAT+GGG - chr1_2:77302248-77302267 Msa0094180:CDS 55.0%
GGACACGTGAATGCAAGGGA+CGG - chr1_2:77302655-77302674 Msa0094180:intron 55.0%
GACACGTGAATGCAAGGGAC+GGG - chr1_2:77302656-77302675 Msa0094180:intron 55.0%
TCGACACTAAATTGGGCCGC+GGG + chr1_2:77303611-77303630 None:intergenic 55.0%
GTCGACACTAAATTGGGCCG+CGG + chr1_2:77303612-77303631 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr1_2:77304259-77304278 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr1_2:77304256-77304275 Msa0094180:intron 55.0%
GGGCAGAAGCTGAACCAAAC+AGG + chr1_2:77304449-77304468 None:intergenic 55.0%
! GGTGCTACCTCCTTCATTGG+TGG + chr1_2:77306636-77306655 None:intergenic 55.0%
!! CCTGGTGCTACCTCCTTCAT+TGG + chr1_2:77306639-77306658 None:intergenic 55.0%
CCAATGAAGGAGGTAGCACC+AGG - chr1_2:77306636-77306655 Msa0094180:intron 55.0%
! TGACCACTTGCGTGTTGCTG+AGG - chr1_2:77307501-77307520 Msa0094180:CDS 55.0%
ACACAAGGGGCCAACTTCCT+TGG + chr1_2:77308231-77308250 None:intergenic 55.0%
!! AGGTTGACGAGAAGCACCTG+AGG + chr1_2:77308740-77308759 None:intergenic 55.0%
AGCGGCACAAGCTTCCTACA+AGG - chr1_2:77308859-77308878 Msa0094180:CDS 55.0%
!! TGCTGCATCGGCCTTGTTTC+TGG - chr1_2:77309070-77309089 Msa0094180:intron 55.0%
!! CGGCCTTGTTTCTGGCAAGA+TGG - chr1_2:77309078-77309097 Msa0094180:intron 55.0%
GAAATGCACCAACCCATGGG+TGG + chr1_2:77309121-77309140 None:intergenic 55.0%
AGGAATGCCAGCAGGATACG+CGG + chr1_2:77309890-77309909 None:intergenic 55.0%
GCATTCCTGACCCCAAAGGT+TGG - chr1_2:77309902-77309921 Msa0094180:CDS 55.0%
CAGGCCTTCCGCGTAAGAAG+AGG - chr1_2:77299914-77299933 Msa0094180:three_prime_UTR 60.0%
CTGCCCTCTTCTTACGCGGA+AGG + chr1_2:77299921-77299940 None:intergenic 60.0%
TCTGAATGCGCCCAAGGGTC+CGG - chr1_2:77300283-77300302 Msa0094180:intron 60.0%
! CAGTCAAGGCACCCATGGGT+TGG - chr1_2:77302252-77302271 Msa0094180:CDS 60.0%
ACGTGAATGCAAGGGACGGG+CGG - chr1_2:77302659-77302678 Msa0094180:intron 60.0%
GGAGGTAGCACCAGGAACTC+AGG - chr1_2:77306644-77306663 Msa0094180:intron 60.0%
GGTGGTAGCTCAGCAGCTGA+TGG + chr1_2:77307018-77307037 None:intergenic 60.0%
CAGTCAAGCCACCCATGGGT+TGG - chr1_2:77309110-77309129 Msa0094180:intron 60.0%
TTGGGGTCAGGAATGCCAGC+AGG + chr1_2:77309898-77309917 None:intergenic 60.0%
GCTGGCATTCCTGACCCCAA+AGG - chr1_2:77309898-77309917 Msa0094180:CDS 60.0%
CGTGAATGCAAGGGACGGGC+GGG - chr1_2:77302660-77302679 Msa0094180:intron 65.0%
GACAGGAGGGATAGGGGCTG+CGG + chr1_2:77304016-77304035 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 77299736 77310010 77299736 ID=Msa0094180;Name=Msa0094180
chr1_2 mRNA 77299736 77310010 77299736 ID=Msa0094180-mRNA-1;Parent=Msa0094180;Name=Msa0094180-mRNA-1;_AED=0.18;_eAED=0.19;_QI=0|0.72|0.65|1|0.81|0.73|23|455|877
chr1_2 exon 77299736 77300244 77299736 ID=Msa0094180-mRNA-1:exon:27427;Parent=Msa0094180-mRNA-1
chr1_2 exon 77300388 77300525 77300388 ID=Msa0094180-mRNA-1:exon:27426;Parent=Msa0094180-mRNA-1
chr1_2 exon 77300619 77300768 77300619 ID=Msa0094180-mRNA-1:exon:27425;Parent=Msa0094180-mRNA-1
chr1_2 exon 77300866 77300899 77300866 ID=Msa0094180-mRNA-1:exon:27424;Parent=Msa0094180-mRNA-1
chr1_2 exon 77301004 77301080 77301004 ID=Msa0094180-mRNA-1:exon:27423;Parent=Msa0094180-mRNA-1
chr1_2 exon 77301370 77301445 77301370 ID=Msa0094180-mRNA-1:exon:27422;Parent=Msa0094180-mRNA-1
chr1_2 exon 77301533 77301666 77301533 ID=Msa0094180-mRNA-1:exon:27421;Parent=Msa0094180-mRNA-1
chr1_2 exon 77301937 77302029 77301937 ID=Msa0094180-mRNA-1:exon:27420;Parent=Msa0094180-mRNA-1
chr1_2 exon 77302224 77302378 77302224 ID=Msa0094180-mRNA-1:exon:27419;Parent=Msa0094180-mRNA-1
chr1_2 exon 77302515 77302642 77302515 ID=Msa0094180-mRNA-1:exon:27418;Parent=Msa0094180-mRNA-1
chr1_2 exon 77302709 77302785 77302709 ID=Msa0094180-mRNA-1:exon:27417;Parent=Msa0094180-mRNA-1
chr1_2 exon 77302973 77303203 77302973 ID=Msa0094180-mRNA-1:exon:27416;Parent=Msa0094180-mRNA-1
chr1_2 exon 77307086 77307151 77307086 ID=Msa0094180-mRNA-1:exon:27415;Parent=Msa0094180-mRNA-1
chr1_2 exon 77307247 77307381 77307247 ID=Msa0094180-mRNA-1:exon:27414;Parent=Msa0094180-mRNA-1
chr1_2 exon 77307477 77307626 77307477 ID=Msa0094180-mRNA-1:exon:27413;Parent=Msa0094180-mRNA-1
chr1_2 exon 77307722 77307755 77307722 ID=Msa0094180-mRNA-1:exon:27412;Parent=Msa0094180-mRNA-1
chr1_2 exon 77307869 77307945 77307869 ID=Msa0094180-mRNA-1:exon:27411;Parent=Msa0094180-mRNA-1
chr1_2 exon 77308031 77308106 77308031 ID=Msa0094180-mRNA-1:exon:27410;Parent=Msa0094180-mRNA-1
chr1_2 exon 77308498 77308631 77308498 ID=Msa0094180-mRNA-1:exon:27409;Parent=Msa0094180-mRNA-1
chr1_2 exon 77308789 77308881 77308789 ID=Msa0094180-mRNA-1:exon:27408;Parent=Msa0094180-mRNA-1
chr1_2 exon 77309352 77309509 77309352 ID=Msa0094180-mRNA-1:exon:27407;Parent=Msa0094180-mRNA-1
chr1_2 exon 77309629 77309776 77309629 ID=Msa0094180-mRNA-1:exon:27406;Parent=Msa0094180-mRNA-1
chr1_2 exon 77309795 77310010 77309795 ID=Msa0094180-mRNA-1:exon:27405;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77309795 77310010 77309795 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77309629 77309776 77309629 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77309352 77309509 77309352 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77308789 77308881 77308789 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77308498 77308631 77308498 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77308031 77308106 77308031 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77307869 77307945 77307869 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77307722 77307755 77307722 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77307477 77307626 77307477 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77307247 77307381 77307247 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77307086 77307151 77307086 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77302973 77303203 77302973 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77302709 77302785 77302709 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77302515 77302642 77302515 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77302224 77302378 77302224 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77301937 77302029 77301937 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77301533 77301666 77301533 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77301370 77301445 77301370 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77301004 77301080 77301004 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77300866 77300899 77300866 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77300619 77300768 77300619 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77300388 77300525 77300388 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 CDS 77300191 77300244 77300191 ID=Msa0094180-mRNA-1:cds;Parent=Msa0094180-mRNA-1
chr1_2 three_prime_UTR 77299736 77300190 77299736 ID=Msa0094180-mRNA-1:three_prime_utr;Parent=Msa0094180-mRNA-1
Gene Sequence

>Msa0094180

ATGAAGAAAGATAAGAGTGTCAGTTCGAAAGCTGGAGAGGTCCCAGTTAGATTAACTCGCGCACGAGTTGCTGCTTTAAGTGCAACAGGAGAGTTGCCACCATTGAAGGATGATGTAGCACAAGAAAGTCAGAAGCATCCGCAAGGCACCAATTCAGAAAGAGCAGTCTCTGATGATACAGGCCTTCCGCGTAAGAAGAGGGCAGCTCTTGAGGATGCTAAGAAAACAAAGCTGACCAAGCCGGATCAACTCAATGTTTCAACTGAGGTTCCATCCGTTTCTTTGGAAGACAATGCACCTTCAAATCTGATTGGTGGCCAGACATCTGAACCATCTGCTCAGCCTTTGATTTCTCAAGCTAAAGCAGCTTCACAAACTGATGCAGCCAAGAAAGATAGTGATTCCGAACTTCTGAATGCGCCCAAGGGTCCGGATATTCCTAATATAGATGCTGATATTGAAGATCCTCAACTATGCAGCTTCTATGCCGCTGATATATATGACAGCTTGCGTATTGCTGAGCTGTCAAGAAGGCCTCATCCTAACTTCATGGAAACAGTACAGCGAGATATAACTCCAGCCATGCGTGCGATACTGATTGATTGGCTTGTAGAGGTTTCTGAGCAATTCAATTTGCAAGCAAACACTCTCTACCTCACTGTATATCTCATAGATTTGTTTCTCTCCAAAAACTCCATTGAAAGACACAGACTTCAACTGCTAGGCATCACTTGCATGCTAATTGCCTCGAAGTACGAAGAAATTAATGCCAACAATGTTGAAGATTTCTGCGTCATGACGGACAACACATACACAAGAGAGGAGGTACTAAATATGGAGATTCAAGTGTTGAAGTCATCTGCATATCAACTGTTCGCTCCCACAACAAAACATTTTCTCAGGAGGTTTCTTCGAGCAGCACAAGCTTCATACCAGACACCTAGCGTTGAGTTGGAGTACTTGGCAAATTATCTGGCTGAATTAACACTGATGAACTATGGTTTCTTAAATTTCTTTCCTTCTATGATTGCTGCATCTGCCGTGTTTCTTGCAAGATGGACATTGGATCAGTCAAGGCACCCATGGAATCCAACTCTTGAACACTATGCCTCTTACAAAGCATCAGATTTGAAAGCCACAGTTCTTGCATTACAAATTTTACAGCTGAATAGCGATGATTGCCATTTACCTGCGATCCGTACAAAATACCGACAAGGCAAGCAGTTTTATCTTCACCAAAACTACCTGAAACAATGTTTTGAAGATGAAGATGAAGATGATGGACACATGAGGAAGAGTGTCACTCTGAAAGCTGGAGAGGTTTCAAGTCGATTGACTCGTGCTCAAGCTGTGGCTTTAAGTACAACTGGACAGTTACCACCAATGAAGGAGGTAGCACCAGGAACTCAGGATCAGAAGCAGCCACTTAGAGCCAATTCAAAAAGAGCACTTTCAGATGTTACATATCTTCCTCATAAAAAGAGGGCAATTCTTCAAGATGTCACTAACAATTGCGGCGCTAAGAAAAGGAAGGTGGCTAAGCCTGCTCAACCTCATGTTTCAAATGAGGTTCCATCAGCTGCTGAGCTACCACCGTGCTTATATGATTTGGAAGACAATGCACCTCTTAGGATTAGTGTCAACCAGTGTGGCACAGACAATAATCTGCTTCAGAGCCAGACGTCTAGAATATCTGCTTGGCCTTCGAGTTCTCAAAAGAAAGCTTCACAAATTGTTGCAGCCAAGAGAGGTAACATTTCTGAACTTTTGGATGTGTCAAAGCATCCAGATGTCGCTGACATAGATGCTGATTTTGAAGATCCTCAACTATGCAGCCACTATGCTGCTGATATATATGACCACTTGCGTGTTGCTGAGCTGTCAAGAAGGCCTTATCCTAACTTCATGGAAACAGTACAGCAAGATATCACTCCAAGCATGCGTGCAATACTGGTTGATTGGCTTGTTGAGGTTTCTGAGGGATACAAATTGCAAGCAAACACTCTTTACCTCGCTGTATATCTCATTGATTGGTTTCTCTCCAAAAATTGTATTGAAAAAGAGAGACTTCAGCTGCTGGGCATTACTTGCATGCTAATTGCCTCAAAATACGAAGAAATTAACGCCCCTCGTATTGAAGACTTCTGCTTCATCACAGATAACACATACACAAAAGAGGAGGTAGTAAAACTGGAATCTCTAGTGCTGAAGTCCTCTTCATATCAACTATTTGCTCCTACTACCAAAACTTTCCTCAGGAGGTTTCTTCGAGCGGCACAAGCTTCCTACAAGAGACCTAGCATTGAGTTGGAGTACTTGACAAATTACCTGGCTGAACTAACACTGTTGAACTATGGTTTCTTAAATTTCCTTCCTTCTATGATTGCTGCATCGGCCTTGTTTCTGGCAAGATGGACATTAGATCAGTCAAGCCACCCATGGAATCCAACTCTTGAACACTATGCCTCTTACAAAGCATCAGATTTGAAAGCTACAGTTCTTGCATTACAAGATCTACAACTGAATAGTAATGATGACTGCCCTTTAGCCTCCATCCGCAAGAAGTACACACAAGACAAGCTCAATGGTGTAGCAGCTTTATCTTCACCAAAACTGCTTGAAACAATGTTCTGA
Protein sequence

>Msa0094180

MKKDKSVSSKAGEVPVRLTRARVAALSATGELPPLKDDVAQESQKHPQGTNSERAVSDDTGLPRKKRAALEDAKKTKLTKPDQLNVSTEVPSVSLEDNAPSNLIGGQTSEPSAQPLISQAKAASQTDAAKKDSDSELLNAPKGPDIPNIDADIEDPQLCSFYAADIYDSLRIAELSRRPHPNFMETVQRDITPAMRAILIDWLVEVSEQFNLQANTLYLTVYLIDLFLSKNSIERHRLQLLGITCMLIASKYEEINANNVEDFCVMTDNTYTREEVLNMEIQVLKSSAYQLFAPTTKHFLRRFLRAAQASYQTPSVELEYLANYLAELTLMNYGFLNFFPSMIAASAVFLARWTLDQSRHPWNPTLEHYASYKASDLKATVLALQILQLNSDDCHLPAIRTKYRQGKQFYLHQNYLKQCFEDEDEDDGHMRKSVTLKAGEVSSRLTRAQAVALSTTGQLPPMKEVAPGTQDQKQPLRANSKRALSDVTYLPHKKRAILQDVTNNCGAKKRKVAKPAQPHVSNEVPSAAELPPCLYDLEDNAPLRISVNQCGTDNNLLQSQTSRISAWPSSSQKKASQIVAAKRGNISELLDVSKHPDVADIDADFEDPQLCSHYAADIYDHLRVAELSRRPYPNFMETVQQDITPSMRAILVDWLVEVSEGYKLQANTLYLAVYLIDWFLSKNCIEKERLQLLGITCMLIASKYEEINAPRIEDFCFITDNTYTKEEVVKLESLVLKSSSYQLFAPTTKTFLRRFLRAAQASYKRPSIELEYLTNYLAELTLLNYGFLNFLPSMIAASALFLARWTLDQSSHPWNPTLEHYASYKASDLKATVLALQDLQLNSNDDCPLASIRKKYTQDKLNGVAALSSPKLLETMF*