Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029910 | sp|Q9SS87|SEOB_ARATH | 31.140 | 623 | 350 | 21 | 109 | 661 | 116 | 729 | 5.54e-86 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0029910 | 0.814038 | 1.888130e-51 | -8.615850e-47 |
| Msa0004880 | Msa0029910 | 0.806631 | 7.487815e-50 | -8.615850e-47 |
| Msa0007080 | Msa0029910 | 0.808579 | 2.889504e-50 | -8.615850e-47 |
| Msa0017510 | Msa0029910 | 0.824525 | 7.700176e-54 | -8.615850e-47 |
| Msa0029880 | Msa0029910 | 0.825799 | 3.848645e-54 | -8.615850e-47 |
| Msa0029890 | Msa0029910 | 0.819738 | 9.918681e-53 | -8.615850e-47 |
| Msa0029900 | Msa0029910 | 0.897061 | 2.024961e-76 | -8.615850e-47 |
| Msa0029910 | Msa0040450 | 0.810856 | 9.362772e-51 | -8.615850e-47 |
| Msa0029910 | Msa0077120 | 0.926603 | 3.737793e-91 | -8.615850e-47 |
| Msa0029910 | Msa0077130 | 0.878086 | 3.733197e-69 | -8.615850e-47 |
| Msa0029910 | Msa0077140 | 0.811636 | 6.340295e-51 | -8.615850e-47 |
| Msa0029910 | Msa0110970 | 0.823837 | 1.116902e-53 | -8.615850e-47 |
| Msa0029910 | Msa0112750 | 0.808231 | 3.428010e-50 | -8.615850e-47 |
| Msa0029910 | Msa0125090 | 0.832381 | 9.765592e-56 | -8.615850e-47 |
| Msa0029910 | Msa0125110 | 0.840540 | 8.176598e-58 | -8.615850e-47 |
| Msa0029910 | Msa0125120 | 0.876077 | 1.858899e-68 | -8.615850e-47 |
| Msa0029910 | Msa0130570 | 0.811260 | 7.653604e-51 | -8.615850e-47 |
| Msa0029910 | Msa0142200 | 0.817261 | 3.615246e-52 | -8.615850e-47 |
| Msa0029910 | Msa0153420 | 0.801624 | 8.245293e-49 | -8.615850e-47 |
| Msa0029910 | Msa0157290 | 0.823599 | 1.270017e-53 | -8.615850e-47 |
| Msa0029910 | Msa0165510 | 0.818557 | 1.842491e-52 | -8.615850e-47 |
| Msa0029910 | Msa0169860 | 0.852980 | 3.232715e-61 | -8.615850e-47 |
| Msa0029910 | Msa0169870 | 0.810156 | 1.326193e-50 | -8.615850e-47 |
| Msa0029910 | Msa0169920 | 0.967665 | 1.365746e-127 | -8.615850e-47 |
| Msa0029910 | Msa0170090 | 0.897406 | 1.450228e-76 | -8.615850e-47 |
| Msa0029910 | Msa0173990 | 0.830632 | 2.632268e-55 | -8.615850e-47 |
| Msa0029910 | Msa0191040 | 0.830184 | 3.386977e-55 | -8.615850e-47 |
| Msa0029910 | Msa0191250 | 0.818907 | 1.534447e-52 | -8.615850e-47 |
| Msa0029910 | Msa0197660 | 0.802371 | 5.790238e-49 | -8.615850e-47 |
| Msa0029910 | Msa0197930 | 0.806262 | 8.959564e-50 | -8.615850e-47 |
| Msa0029910 | Msa0205850 | 0.806390 | 8.421117e-50 | -8.615850e-47 |
| Msa0029910 | Msa0219190 | 0.816156 | 6.395066e-52 | -8.615850e-47 |
| Msa0029910 | Msa0220420 | 0.831680 | 1.455167e-55 | -8.615850e-47 |
| Msa0029910 | Msa0220580 | 0.810257 | 1.261084e-50 | -8.615850e-47 |
| Msa0029910 | Msa0221290 | 0.826722 | 2.321100e-54 | -8.615850e-47 |
| Msa0029910 | Msa0227470 | 0.823358 | 1.446245e-53 | -8.615850e-47 |
| Msa0029910 | Msa0233340 | 0.829815 | 4.166822e-55 | -8.615850e-47 |
| Msa0029910 | Msa0236440 | 0.801626 | 8.239110e-49 | -8.615850e-47 |
| Msa0029910 | Msa0239800 | 0.801246 | 9.858481e-49 | -8.615850e-47 |
| Msa0029910 | Msa0243100 | 0.818375 | 2.025741e-52 | -8.615850e-47 |
| Msa0029910 | Msa0251240 | 0.822195 | 2.697154e-53 | -8.615850e-47 |
| Msa0029910 | Msa0276920 | 0.802623 | 5.138489e-49 | -8.615850e-47 |
| Msa0029910 | Msa0277290 | 0.808440 | 3.093495e-50 | -8.615850e-47 |
| Msa0029910 | Msa0287650 | 0.824424 | 8.132735e-54 | -8.615850e-47 |
| Msa0029910 | Msa0298240 | 0.817788 | 2.749283e-52 | -8.615850e-47 |
| Msa0029910 | Msa0299550 | 0.807449 | 5.026871e-50 | -8.615850e-47 |
| Msa0029910 | Msa0306120 | 0.808833 | 2.549844e-50 | -8.615850e-47 |
| Msa0029910 | Msa0311690 | 0.808832 | 2.551543e-50 | -8.615850e-47 |
| Msa0029910 | Msa0311860 | 0.800239 | 1.582213e-48 | -8.615850e-47 |
| Msa0029910 | Msa0317510 | 0.812073 | 5.091999e-51 | -8.615850e-47 |
| Msa0029910 | Msa0323610 | 0.848625 | 5.439954e-60 | -8.615850e-47 |
| Msa0029910 | Msa0331540 | 0.816414 | 5.599383e-52 | -8.615850e-47 |
| Msa0029910 | Msa0333920 | 0.806238 | 9.064069e-50 | -8.615850e-47 |
| Msa0029910 | Msa0334040 | 0.817955 | 2.521069e-52 | -8.615850e-47 |
| Msa0029910 | Msa0373960 | 0.802671 | 5.021759e-49 | -8.615850e-47 |
| Msa0029910 | Msa0374850 | 0.800299 | 1.538218e-48 | -8.615850e-47 |
| Msa0029910 | Msa0385390 | 0.819547 | 1.096662e-52 | -8.615850e-47 |
| Msa0029910 | Msa0407780 | 0.808943 | 2.415223e-50 | -8.615850e-47 |
| Msa0029910 | Msa0407900 | 0.800598 | 1.337179e-48 | -8.615850e-47 |
| Msa0029910 | Msa0407920 | 0.819599 | 1.067133e-52 | -8.615850e-47 |
| Msa0029910 | Msa0410650 | 0.801657 | 8.120057e-49 | -8.615850e-47 |
| Msa0029910 | Msa0415320 | 0.800288 | 1.546372e-48 | -8.615850e-47 |
| Msa0029910 | Msa0419820 | 0.813753 | 2.181595e-51 | -8.615850e-47 |
| Msa0029910 | Msa0451400 | 0.800131 | 1.664056e-48 | -8.615850e-47 |
| Msa0029910 | Msa0452920 | 0.827038 | 1.950418e-54 | -8.615850e-47 |
| Msa0029910 | Msa0469260 | 0.803587 | 3.246214e-49 | -8.615850e-47 |
| Msa0029910 | Msa0483650 | 0.820470 | 6.745651e-53 | -8.615850e-47 |
| Msa0029910 | Msa0484780 | 0.830976 | 2.168375e-55 | -8.615850e-47 |
| Msa0029910 | Msa0499480 | 0.815694 | 8.107144e-52 | -8.615850e-47 |
| Msa0029910 | Msa0503540 | 0.815402 | 9.414344e-52 | -8.615850e-47 |
| Msa0029910 | Msa0503580 | 0.803915 | 2.775896e-49 | -8.615850e-47 |
| Msa0029910 | Msa0517330 | 0.803408 | 3.535940e-49 | -8.615850e-47 |
| Msa0029910 | Msa0520700 | 0.803699 | 3.077382e-49 | -8.615850e-47 |
| Msa0029910 | Msa0523460 | 0.803719 | 3.048790e-49 | -8.615850e-47 |
| Msa0029910 | Msa0534590 | 0.819248 | 1.283253e-52 | -8.615850e-47 |
| Msa0029910 | Msa0590800 | 0.811219 | 7.809999e-51 | -8.615850e-47 |
| Msa0029910 | Msa0626280 | 0.800883 | 1.169120e-48 | -8.615850e-47 |
| Msa0029910 | Msa0631120 | 0.825379 | 4.841700e-54 | -8.615850e-47 |
| Msa0029910 | Msa0641360 | 0.821896 | 3.163881e-53 | -8.615850e-47 |
| Msa0029910 | Msa0657970 | 0.801475 | 8.846687e-49 | -8.615850e-47 |
| Msa0029910 | Msa0662240 | 0.817238 | 3.658672e-52 | -8.615850e-47 |
| Msa0029910 | Msa0667050 | 0.804806 | 1.809720e-49 | -8.615850e-47 |
| Msa0029910 | Msa0669340 | 0.804909 | 1.722335e-49 | -8.615850e-47 |
| Msa0029910 | Msa0682550 | 0.824235 | 9.007449e-54 | -8.615850e-47 |
| Msa0029910 | Msa0702350 | 0.803119 | 4.058336e-49 | -8.615850e-47 |
| Msa0029910 | Msa0727710 | 0.800690 | 1.280588e-48 | -8.615850e-47 |
| Msa0029910 | Msa0737190 | 0.822159 | 2.749063e-53 | -8.615850e-47 |
| Msa0029910 | Msa0741900 | 0.823284 | 1.504925e-53 | -8.615850e-47 |
| Msa0029910 | Msa0742180 | 0.816675 | 4.894786e-52 | -8.615850e-47 |
| Msa0029910 | Msa0756630 | -0.802412 | 5.680045e-49 | -8.615850e-47 |
| Msa0029910 | Msa0789660 | 0.814489 | 1.500848e-51 | -8.615850e-47 |
| Msa0029910 | Msa0819680 | 0.814442 | 1.537193e-51 | -8.615850e-47 |
| Msa0029910 | Msa0829620 | 0.813077 | 3.071419e-51 | -8.615850e-47 |
| Msa0029910 | Msa0862100 | 0.811168 | 8.012855e-51 | -8.615850e-47 |
| Msa0029910 | Msa0867890 | 0.820859 | 5.489173e-53 | -8.615850e-47 |
| Msa0029910 | Msa0880140 | 0.824192 | 9.218909e-54 | -8.615850e-47 |
| Msa0029910 | Msa0895790 | 0.802250 | 6.132732e-49 | -8.615850e-47 |
| Msa0029910 | Msa0941820 | 0.824674 | 7.103070e-54 | -8.615850e-47 |
| Msa0029910 | Msa0961690 | 0.809006 | 2.341478e-50 | -8.615850e-47 |
| Msa0029910 | Msa0964840 | 0.800813 | 1.208730e-48 | -8.615850e-47 |
| Msa0029910 | Msa0966420 | 0.811855 | 5.681923e-51 | -8.615850e-47 |
| Msa0029910 | Msa0973250 | 0.807360 | 5.249676e-50 | -8.615850e-47 |
| Msa0029910 | Msa0979510 | 0.815265 | 1.010076e-51 | -8.615850e-47 |
| Msa0029910 | Msa1033560 | 0.805298 | 1.428021e-49 | -8.615850e-47 |
| Msa0029910 | Msa1034680 | 0.823799 | 1.140482e-53 | -8.615850e-47 |
| Msa0029910 | Msa1042670 | 0.819041 | 1.430273e-52 | -8.615850e-47 |
| Msa0029910 | Msa1070690 | 0.802184 | 6.327926e-49 | -8.615850e-47 |
| Msa0029910 | Msa1073340 | 0.824039 | 1.001676e-53 | -8.615850e-47 |
| Msa0029910 | Msa1079590 | 0.807426 | 5.083660e-50 | -8.615850e-47 |
| Msa0029910 | Msa1081570 | 0.802868 | 4.573034e-49 | -8.615850e-47 |
| Msa0029910 | Msa1082500 | 0.841237 | 5.366520e-58 | -8.615850e-47 |
| Msa0029910 | Msa1096210 | 0.802055 | 6.727837e-49 | -8.615850e-47 |
| Msa0029910 | Msa1104000 | 0.804141 | 2.491029e-49 | -8.615850e-47 |
| Msa0029910 | Msa1113850 | 0.810135 | 1.339568e-50 | -8.615850e-47 |
| Msa0029910 | Msa1127140 | 0.804524 | 2.072916e-49 | -8.615850e-47 |
| Msa0029910 | Msa1160400 | 0.820951 | 5.229550e-53 | -8.615850e-47 |
| Msa0029910 | Msa1169990 | 0.821134 | 4.744626e-53 | -8.615850e-47 |
| Msa0029910 | Msa1172670 | 0.812438 | 4.239681e-51 | -8.615850e-47 |
| Msa0029910 | Msa1179280 | 0.821875 | 3.200377e-53 | -8.615850e-47 |
| Msa0029910 | Msa1179520 | 0.817867 | 2.639703e-52 | -8.615850e-47 |
| Msa0029910 | Msa1214880 | 0.811480 | 6.855737e-51 | -8.615850e-47 |
| Msa0029910 | Msa1214890 | 0.824182 | 9.272852e-54 | -8.615850e-47 |
| Msa0029910 | Msa1218480 | 0.812048 | 5.157326e-51 | -8.615850e-47 |
| Msa0029910 | Msa1228190 | 0.820326 | 7.275486e-53 | -8.615850e-47 |
| Msa0029910 | Msa1233560 | 0.819922 | 9.002358e-53 | -8.615850e-47 |
| Msa0029910 | Msa1260610 | 0.807137 | 5.855629e-50 | -8.615850e-47 |
| Msa0029910 | Msa1266960 | 0.800995 | 1.109349e-48 | -8.615850e-47 |
| Msa0029910 | Msa1271260 | 0.837813 | 4.166133e-57 | -8.615850e-47 |
| Msa0029910 | Msa1278840 | 0.819172 | 1.335097e-52 | -8.615850e-47 |
| Msa0029910 | Msa1289280 | 0.821644 | 3.618182e-53 | -8.615850e-47 |
| Msa0029910 | Msa1305510 | 0.818557 | 1.841915e-52 | -8.615850e-47 |
| Msa0029910 | Msa1305870 | 0.806219 | 9.147518e-50 | -8.615850e-47 |
| Msa0029910 | Msa1313970 | 0.819467 | 1.143765e-52 | -8.615850e-47 |
| Msa0029910 | Msa1316540 | 0.806143 | 9.492445e-50 | -8.615850e-47 |
| Msa0029910 | Msa1331910 | 0.827858 | 1.239950e-54 | -8.615850e-47 |
| Msa0029910 | Msa1420060 | 0.821974 | 3.035616e-53 | -8.615850e-47 |
| Msa0029910 | Msa1429420 | 0.805942 | 1.046051e-49 | -8.615850e-47 |
| Msa0029910 | Msa1438250 | 0.821322 | 4.293284e-53 | -8.615850e-47 |
| Msa0029910 | Msa1453250 | 0.802767 | 4.798545e-49 | -8.615850e-47 |
| Msa0029910 | Msa1457430 | 0.801816 | 7.532299e-49 | -8.615850e-47 |
| Msa0029910 | Msa1464160 | 0.803858 | 2.852015e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029910 | MtrunA17_Chr1g0186851 | 96.114 | 669 | 26 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1323 |
| Msa0029910 | MtrunA17_Chr1g0186861 | 81.777 | 664 | 119 | 1 | 1 | 662 | 1 | 664 | 0.0 | 1122 |
| Msa0029910 | MtrunA17_Chr1g0187041 | 76.762 | 667 | 153 | 1 | 1 | 665 | 1 | 667 | 0.0 | 1030 |
| Msa0029910 | MtrunA17_Chr1g0186911 | 83.096 | 562 | 95 | 0 | 101 | 662 | 1 | 562 | 0.0 | 966 |
| Msa0029910 | MtrunA17_Chr1g0186841 | 58.383 | 668 | 270 | 6 | 5 | 669 | 9 | 671 | 0.0 | 798 |
| Msa0029910 | MtrunA17_Chr1g0165791 | 34.933 | 667 | 410 | 9 | 20 | 668 | 25 | 685 | 2.45e-142 | 431 |
| Msa0029910 | MtrunA17_Chr7g0226571 | 33.862 | 694 | 400 | 19 | 24 | 663 | 25 | 713 | 2.78e-110 | 349 |
| Msa0029910 | MtrunA17_Chr1g0187001 | 31.947 | 673 | 397 | 16 | 20 | 668 | 11 | 646 | 4.55e-102 | 325 |
| Msa0029910 | MtrunA17_Chr1g0186991 | 30.700 | 671 | 406 | 17 | 20 | 663 | 31 | 669 | 1.07e-98 | 317 |
| Msa0029910 | MtrunA17_Chr8g0381301 | 30.484 | 702 | 428 | 22 | 13 | 660 | 8 | 703 | 1.58e-94 | 307 |
| Msa0029910 | MtrunA17_Chr3g0116601 | 31.679 | 685 | 413 | 20 | 23 | 659 | 27 | 704 | 1.83e-94 | 306 |
| Msa0029910 | MtrunA17_Chr1g0186981 | 29.955 | 671 | 410 | 14 | 20 | 666 | 34 | 668 | 2.54e-93 | 303 |
| Msa0029910 | MtrunA17_Chr1g0186901 | 76.699 | 103 | 22 | 1 | 1 | 101 | 1 | 103 | 1.28e-45 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029910 | AT3G01680.1 | 31.140 | 623 | 350 | 21 | 109 | 661 | 116 | 729 | 5.63e-87 | 288 |
| Msa0029910 | AT3G01670.2 | 25.282 | 708 | 438 | 22 | 22 | 659 | 158 | 844 | 1.19e-52 | 195 |
| Msa0029910 | AT3G01670.1 | 25.282 | 708 | 438 | 22 | 22 | 659 | 134 | 820 | 1.46e-52 | 194 |
| Msa0029910 | AT1G67790.1 | 24.378 | 603 | 398 | 19 | 96 | 657 | 79 | 664 | 1.99e-39 | 154 |
Find 155 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTGAGTATGGAGATTTC+TGG | 0.121043 | 1_1:+55669470 | Msa0029910:CDS |
| TTCTTTATATGATCATAAAT+TGG | 0.139133 | 1_1:-55670479 | None:intergenic |
| GGAAATTATGGAAGTGTTTA+AGG | 0.152492 | 1_1:+55670210 | Msa0029910:CDS |
| AAAACATCGCAATGAAATTT+TGG | 0.167607 | 1_1:+55669585 | Msa0029910:CDS |
| TATGTACTTGATACCTTTAA+TGG | 0.197622 | 1_1:-55670624 | None:intergenic |
| CATTGATTCTTCTTTGGATT+TGG | 0.201689 | 1_1:-55670768 | None:intergenic |
| CATCACTTTGCACCCATTAA+AGG | 0.204242 | 1_1:+55670611 | Msa0029910:CDS |
| AATTCCCAGTTGATGTATAT+TGG | 0.204655 | 1_1:+55669725 | Msa0029910:CDS |
| ACATTGATATAAATATTAAA+TGG | 0.221988 | 1_1:+55670828 | Msa0029910:CDS |
| GAAAAGTCTGTCATCATTTA+TGG | 0.229545 | 1_1:+55670975 | Msa0029910:CDS |
| CAAATGTGGTTAACAACTTT+TGG | 0.237806 | 1_1:+55671117 | Msa0029910:CDS |
| TTGTGTCATTGATTCTTCTT+TGG | 0.239627 | 1_1:-55670774 | None:intergenic |
| AGGCAGAATTTATCTCATTT+TGG | 0.249523 | 1_1:+55669960 | Msa0029910:CDS |
| CTTGATTATGCCTAATGATT+TGG | 0.255438 | 1_1:-55669527 | None:intergenic |
| TCAAACCCCGACGGAAATTA+TGG | 0.258203 | 1_1:+55670198 | Msa0029910:CDS |
| CCATCATAGATGGGAGCTTT+TGG | 0.260268 | 1_1:-55670256 | None:intergenic |
| ATTCCATATGATTCAAGTTT+GGG | 0.287868 | 1_1:+55670724 | Msa0029910:CDS |
| CAAAAGTTGTTAACCACATT+TGG | 0.289864 | 1_1:-55671116 | None:intergenic |
| TCAAAATTGAGATGTCTTCT+TGG | 0.293163 | 1_1:-55670454 | None:intergenic |
| CATTCCATATGATTCAAGTT+TGG | 0.299165 | 1_1:+55670723 | Msa0029910:CDS |
| AAAATTACTCTTGTGGGTTA+TGG | 0.300184 | 1_1:-55666038 | None:intergenic |
| TCCAGCTCTTGCACCAGCTT+TGG | 0.314260 | 1_1:+55669699 | Msa0029910:CDS |
| GCTCATCAGACATGGTTAAA+TGG | 0.320274 | 1_1:-55666147 | None:intergenic |
| ATTCCCAGTTGATGTATATT+GGG | 0.322317 | 1_1:+55669726 | Msa0029910:CDS |
| TCACAAATGCAACTAGAATA+AGG | 0.336343 | 1_1:+55671712 | Msa0029910:three_prime_UTR |
| GAAAGATGTGGCGATCAATA+AGG | 0.338625 | 1_1:+55671325 | Msa0029910:CDS |
| CATGTCTGATGAGCACATTT+TGG | 0.345477 | 1_1:+55666156 | Msa0029910:CDS |
| CTCCCCAAACTTGAATCATA+TGG | 0.346723 | 1_1:-55670727 | None:intergenic |
| CATTGGCCTTATCGCCGTTA+TGG | 0.358368 | 1_1:-55671508 | None:intergenic |
| ATAACCCAATATACATCAAC+TGG | 0.359445 | 1_1:-55669730 | None:intergenic |
| AAAACCTGTCAAACTATTCA+TGG | 0.362097 | 1_1:+55669413 | Msa0029910:CDS |
| ATTCAAGTTTGGGGAGTAAA+GGG | 0.363993 | 1_1:+55670734 | Msa0029910:CDS |
| ACTCATGGCTACATTGCTTA+AGG | 0.368571 | 1_1:-55671662 | None:intergenic |
| TCTTCTTTGGATTTGGAGTA+AGG | 0.371960 | 1_1:-55670761 | None:intergenic |
| GTTGAGACTCCAAGCAAAAT+AGG | 0.374745 | 1_1:-55671091 | None:intergenic |
| CTAGAGATTCCCAATATTGC+TGG | 0.376689 | 1_1:+55671413 | Msa0029910:CDS |
| TCTTTATATGATCATAAATT+GGG | 0.380456 | 1_1:-55670478 | None:intergenic |
| TCCATTGCGCGGTGACAATC+TGG | 0.382744 | 1_1:-55671461 | None:intergenic |
| TTTAGTCGAACCATCATAGA+TGG | 0.384861 | 1_1:-55670266 | None:intergenic |
| ATGTACTTGATACCTTTAAT+GGG | 0.385849 | 1_1:-55670623 | None:intergenic |
| TATGATCATATAAAGAAAAC+TGG | 0.388913 | 1_1:+55670485 | Msa0029910:CDS |
| CAGACATGGTTAAATGGTTA+TGG | 0.390652 | 1_1:-55666141 | None:intergenic |
| TGCACTAAAATTACTCTTGT+GGG | 0.397684 | 1_1:-55666044 | None:intergenic |
| GGACTCAACACAAGAAATAA+AGG | 0.400912 | 1_1:-55670674 | None:intergenic |
| CATCAAATTTAGTGTCACTA+TGG | 0.409076 | 1_1:-55666201 | None:intergenic |
| CTTTCTTACAAGAATGAGAC+TGG | 0.413501 | 1_1:+55671215 | Msa0029910:CDS |
| TCTGGACACTCGATAAAATC+TGG | 0.418484 | 1_1:-55671443 | None:intergenic |
| AACAAACACTGTTACACAAC+TGG | 0.424421 | 1_1:+55671181 | Msa0029910:CDS |
| CTCATGGCTACATTGCTTAA+GGG | 0.430820 | 1_1:-55671661 | None:intergenic |
| ATTGTGACTTCTGTTGATCA+TGG | 0.431318 | 1_1:+55671263 | Msa0029910:CDS |
| TAAAGGTATCAAGTACATAA+AGG | 0.437070 | 1_1:+55670628 | Msa0029910:CDS |
| ATTTAAGTTATCTGTTCTAA+AGG | 0.438062 | 1_1:+55671779 | Msa0029910:three_prime_UTR |
| GAACCACTTGCCAAATCATT+AGG | 0.438307 | 1_1:+55669517 | Msa0029910:CDS |
| TGGCAAGTGGTTCTGTTGGT+TGG | 0.443588 | 1_1:-55669507 | None:intergenic |
| GATTCAAGTTTGGGGAGTAA+AGG | 0.451419 | 1_1:+55670733 | Msa0029910:CDS |
| GTTCTTGTTCATTTCAACTC+TGG | 0.451654 | 1_1:+55670424 | Msa0029910:CDS |
| TAAGGCCAATGGCAAGCATT+AGG | 0.453416 | 1_1:+55671520 | Msa0029910:CDS |
| TCATTCCATTCCTCCACAAT+GGG | 0.453843 | 1_1:-55670533 | None:intergenic |
| CTTTGAAGTCAAAGATGCCT+TGG | 0.456421 | 1_1:+55670579 | Msa0029910:CDS |
| AGAAGTCACAATAGACCCTT+TGG | 0.457140 | 1_1:-55671252 | None:intergenic |
| CAACATGGGTTGAACGTGTA+AGG | 0.459385 | 1_1:-55666255 | None:intergenic |
| TAATAGCGGCATCATTTGCT+AGG | 0.464096 | 1_1:-55671046 | None:intergenic |
| AAAGATGTGGCGATCAATAA+GGG | 0.468286 | 1_1:+55671326 | Msa0029910:CDS |
| TCCAAAGCTGGTGCAAGAGC+TGG | 0.468376 | 1_1:-55669700 | None:intergenic |
| TCAGGGACATCAAGGAGGTC+TGG | 0.469377 | 1_1:+55667337 | Msa0029910:intron |
| AACTATTCATGGGTTGCAAA+AGG | 0.472460 | 1_1:+55669424 | Msa0029910:CDS |
| CATTGATATAAATATTAAAT+GGG | 0.472794 | 1_1:+55670829 | Msa0029910:CDS |
| TATAATTATCAGGGACATCA+AGG | 0.473246 | 1_1:+55667329 | Msa0029910:intron |
| CATTGAAATCATCATTGAGT+TGG | 0.474539 | 1_1:+55669642 | Msa0029910:CDS |
| GGAGCTCAAGAATTTGATCA+AGG | 0.477807 | 1_1:+55669606 | Msa0029910:CDS |
| CAACCCATGAATAGTTTGAC+AGG | 0.478125 | 1_1:-55669417 | None:intergenic |
| TTGTAAGCTATTTCCTCACC+TGG | 0.482226 | 1_1:-55669370 | None:intergenic |
| TTATATCAATGTCAGCCAGC+AGG | 0.486824 | 1_1:-55670817 | None:intergenic |
| CAGTGTTCGAGTTTGACAAA+TGG | 0.491766 | 1_1:+55671303 | Msa0029910:CDS |
| AGAATTTGATCAAGGCAACT+TGG | 0.494238 | 1_1:+55669614 | Msa0029910:CDS |
| TCACAATGCACTATACAGAT+TGG | 0.496814 | 1_1:+55670026 | Msa0029910:CDS |
| AGCTACAAGTGTTGCCATAA+CGG | 0.504999 | 1_1:+55671494 | Msa0029910:CDS |
| CGGGTGGATTAATGTTATCC+AGG | 0.514317 | 1_1:-55667364 | None:intergenic |
| GTGTTGCCATAACGGCGATA+AGG | 0.515751 | 1_1:+55671502 | Msa0029910:CDS |
| ACACTTCCATAATTTCCGTC+GGG | 0.516308 | 1_1:-55670204 | None:intergenic |
| CAGCAATATTGGGAATCTCT+AGG | 0.518330 | 1_1:-55671412 | None:intergenic |
| CCAAAAGCTCCCATCTATGA+TGG | 0.519285 | 1_1:+55670256 | Msa0029910:CDS |
| CAGAGTATAACAAGTTACTC+AGG | 0.520550 | 1_1:+55670167 | Msa0029910:CDS |
| ACTGGGAATTGTTCCAAAGC+TGG | 0.521352 | 1_1:-55669712 | None:intergenic |
| GTGCACTAAAATTACTCTTG+TGG | 0.523282 | 1_1:-55666045 | None:intergenic |
| TCAAGGAGGTCTGGACCACC+TGG | 0.524704 | 1_1:+55667346 | Msa0029910:CDS |
| CAATGACACAAGAATTAATG+TGG | 0.525892 | 1_1:+55670786 | Msa0029910:CDS |
| ATCATTCCATTCCTCCACAA+TGG | 0.531780 | 1_1:-55670534 | None:intergenic |
| AATGTGGGTTGATTCCCTGC+TGG | 0.532892 | 1_1:+55670802 | Msa0029910:CDS |
| CAACAATTCACTAAGTATGC+TGG | 0.534554 | 1_1:+55671020 | Msa0029910:CDS |
| CTGAGCAACAATTGCAACAA+TGG | 0.536652 | 1_1:-55669758 | None:intergenic |
| ATGCCTAATGATTTGGCAAG+TGG | 0.539047 | 1_1:-55669520 | None:intergenic |
| GATTTGGCAAGTGGTTCTGT+TGG | 0.544476 | 1_1:-55669511 | None:intergenic |
| TATATCAATGTCAGCCAGCA+GGG | 0.546119 | 1_1:-55670816 | None:intergenic |
| CAGATGTCATGCAAGGCACC+AGG | 0.546738 | 1_1:+55669352 | Msa0029910:intron |
| ATGGAGGTAAAGATAAGGAA+TGG | 0.549099 | 1_1:+55670994 | Msa0029910:CDS |
| AGCGGTGAAGTGAAGCTAGC+GGG | 0.554507 | 1_1:-55667383 | None:intergenic |
| TTGTGACTTCTGTTGATCAT+GGG | 0.554557 | 1_1:+55671264 | Msa0029910:CDS |
| CATTTATGGAGGTAAAGATA+AGG | 0.555548 | 1_1:+55670989 | Msa0029910:CDS |
| CAATGATAATGCAAGACTCA+TGG | 0.555837 | 1_1:-55671677 | None:intergenic |
| AACACTTCCATAATTTCCGT+CGG | 0.557817 | 1_1:-55670205 | None:intergenic |
| ACATCATAATCAGCAAATTG+AGG | 0.559555 | 1_1:+55669994 | Msa0029910:CDS |
| TCCAGATTGTCACCGCGCAA+TGG | 0.563294 | 1_1:+55671460 | Msa0029910:CDS |
| GGGTTCCCATTGTGGAGGAA+TGG | 0.565612 | 1_1:+55670528 | Msa0029910:CDS |
| CTTCTTTGGATTTGGAGTAA+GGG | 0.567493 | 1_1:-55670760 | None:intergenic |
| AGCTACCTAATGCTTGCCAT+TGG | 0.572796 | 1_1:-55671525 | None:intergenic |
| AAAATGCAATAATTAAACAT+AGG | 0.573094 | 1_1:-55671580 | None:intergenic |
| AAACCTGTCAAACTATTCAT+GGG | 0.575469 | 1_1:+55669414 | Msa0029910:CDS |
| AATAGCGGCATCATTTGCTA+GGG | 0.575747 | 1_1:-55671045 | None:intergenic |
| CAAAATGTGCTCATCAGACA+TGG | 0.576873 | 1_1:-55666155 | None:intergenic |
| GCTTCAGGCTTCGAAAGTTG+AGG | 0.577864 | 1_1:-55669556 | None:intergenic |
| TGTGAATAAGTGATCGCACT+AGG | 0.578637 | 1_1:-55666096 | None:intergenic |
| GGGTGGGCAATTGTAACCAA+AGG | 0.579885 | 1_1:+55671236 | Msa0029910:CDS |
| GAACCCACACAATCTTGTGT+TGG | 0.580807 | 1_1:-55670511 | None:intergenic |
| TGATGTAGAATCTTTCCTTG+TGG | 0.585970 | 1_1:-55670695 | None:intergenic |
| TGATGGTTCGACTAAAACAC+TGG | 0.587238 | 1_1:+55670273 | Msa0029910:CDS |
| TTTCTTGTGTTGAGTCCACA+AGG | 0.590992 | 1_1:+55670680 | Msa0029910:CDS |
| TTAGTCGAACCATCATAGAT+GGG | 0.591512 | 1_1:-55670265 | None:intergenic |
| GCCAGAAATCTCCATACTCA+AGG | 0.592198 | 1_1:-55669471 | None:intergenic |
| GATTGTGTGGGTTCCCATTG+TGG | 0.593856 | 1_1:+55670520 | Msa0029910:CDS |
| GAAGCCAACACAAGATTGTG+TGG | 0.598027 | 1_1:+55670507 | Msa0029910:CDS |
| GGTGGGCAATTGTAACCAAA+GGG | 0.598470 | 1_1:+55671237 | Msa0029910:CDS |
| GTCATGCAAGGCACCAGGTG+AGG | 0.600067 | 1_1:+55669357 | Msa0029910:CDS |
| GTGCGATCACTTATTCACAT+TGG | 0.606075 | 1_1:+55666100 | Msa0029910:CDS |
| CAACTCGCGTCATGACATCA+AGG | 0.608552 | 1_1:+55669672 | Msa0029910:CDS |
| TTACAAGAATGAGACTGGGT+GGG | 0.613509 | 1_1:+55671220 | Msa0029910:CDS |
| TTCCATATGATTCAAGTTTG+GGG | 0.613604 | 1_1:+55670725 | Msa0029910:CDS |
| GCAGAACGTTATCAACAACA+TGG | 0.615403 | 1_1:-55666270 | None:intergenic |
| CACTTCCATAATTTCCGTCG+GGG | 0.623012 | 1_1:-55670203 | None:intergenic |
| AATGACACAAGAATTAATGT+GGG | 0.631951 | 1_1:+55670787 | Msa0029910:CDS |
| TTTGAAGCAAATTAACTCTG+AGG | 0.632146 | 1_1:+55667412 | Msa0029910:CDS |
| CCAGAAATCTCCATACTCAA+GGG | 0.637724 | 1_1:-55669470 | None:intergenic |
| TTTCTTACAAGAATGAGACT+GGG | 0.638297 | 1_1:+55671216 | Msa0029910:CDS |
| CATAACGGCGATAAGGCCAA+TGG | 0.641863 | 1_1:+55671509 | Msa0029910:CDS |
| CTTACAAGAATGAGACTGGG+TGG | 0.646290 | 1_1:+55671219 | Msa0029910:CDS |
| GGAGTCTCAACAGCCAAATG+TGG | 0.652213 | 1_1:+55671103 | Msa0029910:CDS |
| AGGTATCAAGTACATAAAGG+AGG | 0.656067 | 1_1:+55670631 | Msa0029910:CDS |
| AAGTCTGTCATCATTTATGG+AGG | 0.656284 | 1_1:+55670978 | Msa0029910:CDS |
| GTTTGACAAATGGAAAGATG+TGG | 0.658966 | 1_1:+55671313 | Msa0029910:CDS |
| ATGATGGCAGATGTCATGCA+AGG | 0.660192 | 1_1:+55669345 | Msa0029910:intron |
| AGTCTTCGTCTGCTTAATAG+CGG | 0.660331 | 1_1:-55671060 | None:intergenic |
| AAGTGATGCAAAACATACCA+AGG | 0.663117 | 1_1:-55670596 | None:intergenic |
| TAACCCAATATACATCAACT+GGG | 0.665391 | 1_1:-55669729 | None:intergenic |
| TAGGTGAGAGCAAATATGAA+CGG | 0.669677 | 1_1:-55671393 | None:intergenic |
| AAGCCAACACAAGATTGTGT+GGG | 0.670390 | 1_1:+55670508 | Msa0029910:CDS |
| CAGCGGTGAAGTGAAGCTAG+CGG | 0.681552 | 1_1:-55667384 | None:intergenic |
| TAATAAACACTTCCATTGCG+CGG | 0.681677 | 1_1:-55671472 | None:intergenic |
| CAGAACGTTATCAACAACAT+GGG | 0.681953 | 1_1:-55666269 | None:intergenic |
| ATTTAGAGAACATCATCACA+AGG | 0.686779 | 1_1:+55671361 | Msa0029910:CDS |
| GTGGATTAATGTTATCCAGG+TGG | 0.687073 | 1_1:-55667361 | None:intergenic |
| TGTGTGGGTTCCCATTGTGG+AGG | 0.687282 | 1_1:+55670523 | Msa0029910:CDS |
| GAAGCTCTTTCAAACCCCGA+CGG | 0.688404 | 1_1:+55670189 | Msa0029910:CDS |
| GGTGAAGTGAAGCTAGCGGG+TGG | 0.717129 | 1_1:-55667380 | None:intergenic |
| AATTATCAGGGACATCAAGG+AGG | 0.721162 | 1_1:+55667332 | Msa0029910:intron |
| ATTTGCTTCAAAGTACACAG+CGG | 0.765745 | 1_1:-55667401 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTACGATATTTTTTT+CGG | - | chr1_1:55668228-55668247 | None:intergenic | 10.0% |
| !! | TTAAAAAATTTAAGAGTTTA+AGG | + | chr1_1:55668394-55668413 | Msa0029910:intron | 10.0% |
| !!! | TTATAAGTAATTTTTTTTGT+AGG | + | chr1_1:55668453-55668472 | Msa0029910:intron | 10.0% |
| !!! | TATAAGTAATTTTTTTTGTA+GGG | + | chr1_1:55668454-55668473 | Msa0029910:intron | 10.0% |
| !!! | TTCAATTTTTTTTAAAAACA+TGG | - | chr1_1:55669095-55669114 | None:intergenic | 10.0% |
| !!! | TTTTAAAAAAAATTGAAGAA+AGG | + | chr1_1:55669098-55669117 | Msa0029910:intron | 10.0% |
| !!! | ATATGTTTTTATAATTAAAC+AGG | + | chr1_1:55670370-55670389 | Msa0029910:intron | 10.0% |
| !! | ACATTGATATAAATATTAAA+TGG | + | chr1_1:55670828-55670847 | Msa0029910:CDS | 10.0% |
| !! | CATTGATATAAATATTAAAT+GGG | + | chr1_1:55670829-55670848 | Msa0029910:CDS | 10.0% |
| !! | AGTTATTTGTCTTTAATTAT+AGG | - | chr1_1:55667305-55667324 | None:intergenic | 15.0% |
| !!! | ATAACTTGTTTATAATTATC+AGG | + | chr1_1:55667319-55667338 | Msa0029910:intron | 15.0% |
| !!! | TAACTTGTTTATAATTATCA+GGG | + | chr1_1:55667320-55667339 | Msa0029910:intron | 15.0% |
| !!! | TTGTTTCTTATTTTAATTGT+GGG | - | chr1_1:55667618-55667637 | None:intergenic | 15.0% |
| !!! | TTTGTTTCTTATTTTAATTG+TGG | - | chr1_1:55667619-55667638 | None:intergenic | 15.0% |
| !! | ATATGTCATTGATAAAAAAA+AGG | - | chr1_1:55667721-55667740 | None:intergenic | 15.0% |
| !!! | TACTATTTTCAAATTTCTTT+GGG | - | chr1_1:55667860-55667879 | None:intergenic | 15.0% |
| !! | AAAGCTATTAAAATTAAGTA+AGG | - | chr1_1:55668483-55668502 | None:intergenic | 15.0% |
| !! | AAGCATAAATTAAACAAATT+TGG | - | chr1_1:55668144-55668163 | None:intergenic | 15.0% |
| !! | AGATATAAGTAACAAAAATA+TGG | - | chr1_1:55668263-55668282 | None:intergenic | 15.0% |
| !! | AAAGCTATTAAAATTAAGTA+AGG | + | chr1_1:55668483-55668502 | Msa0029910:intron | 15.0% |
| !!! | TATTTTGTTATATTGAAGAA+AGG | + | chr1_1:55669062-55669081 | Msa0029910:intron | 15.0% |
| !!! | TTTCATGAATTTGTTTAATA+TGG | - | chr1_1:55669190-55669209 | None:intergenic | 15.0% |
| !! | ATATTAAACAAATTCATGAA+AGG | + | chr1_1:55669189-55669208 | Msa0029910:intron | 15.0% |
| !! | ACATTTATATTGTATAATGA+TGG | + | chr1_1:55669329-55669348 | Msa0029910:intron | 15.0% |
| !! | TAAATAATTTCCATCAATAT+GGG | - | chr1_1:55670132-55670151 | None:intergenic | 15.0% |
| !! | TTAAATAATTTCCATCAATA+TGG | - | chr1_1:55670133-55670152 | None:intergenic | 15.0% |
| !!! | ATATCTTAATTTAGTTTCAT+TGG | + | chr1_1:55670308-55670327 | Msa0029910:intron | 15.0% |
| !! | TCTTTATATGATCATAAATT+GGG | - | chr1_1:55670481-55670500 | None:intergenic | 15.0% |
| !! | TTCTTTATATGATCATAAAT+TGG | - | chr1_1:55670482-55670501 | None:intergenic | 15.0% |
| !! | AAAATGCAATAATTAAACAT+AGG | - | chr1_1:55671583-55671602 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTCTGAATCAATA+TGG | + | chr1_1:55666069-55666088 | Msa0029910:exon | 20.0% |
| !!! | CTACTATTTTCAAATTTCTT+TGG | - | chr1_1:55667861-55667880 | None:intergenic | 20.0% |
| !! | AAGAAATTTGAAAATAGTAG+TGG | + | chr1_1:55667861-55667880 | Msa0029910:intron | 20.0% |
| !!! | GATACAAAAAAGTATGTAAT+GGG | - | chr1_1:55667906-55667925 | None:intergenic | 20.0% |
| !!! | AGATACAAAAAAGTATGTAA+TGG | - | chr1_1:55667907-55667926 | None:intergenic | 20.0% |
| !! | CTTCATTTACTAAAAGTAAA+TGG | - | chr1_1:55667952-55667971 | None:intergenic | 20.0% |
| !!! | TTTACTTTTAGTAAATGAAG+AGG | + | chr1_1:55667952-55667971 | Msa0029910:intron | 20.0% |
| !! | TTGAAATTAAGGAGTTAAAA+GGG | - | chr1_1:55667998-55668017 | None:intergenic | 20.0% |
| !!! | TTTTAACTCCTTAATTTCAA+GGG | + | chr1_1:55667998-55668017 | Msa0029910:intron | 20.0% |
| !! | ATATTTAACCCTTGAAATTA+AGG | - | chr1_1:55668009-55668028 | None:intergenic | 20.0% |
| !!! | GTTTTTCAACAATTTTTTAC+AGG | + | chr1_1:55668174-55668193 | Msa0029910:intron | 20.0% |
| !!! | TAAACAAAATTTGTTTTAGC+AGG | + | chr1_1:55668422-55668441 | Msa0029910:intron | 20.0% |
| !!! | AAACAAAATTTGTTTTAGCA+GGG | + | chr1_1:55668423-55668442 | Msa0029910:intron | 20.0% |
| !!! | TTTTTCTTTGTTTCAATTGT+GGG | - | chr1_1:55668820-55668839 | None:intergenic | 20.0% |
| !! | TTTAGACTTCTAAATATGTT+GGG | - | chr1_1:55668904-55668923 | None:intergenic | 20.0% |
| !!! | TTTTAGACTTCTAAATATGT+TGG | - | chr1_1:55668905-55668924 | None:intergenic | 20.0% |
| !!! | TAAACTATAAAGTTTTCAGA+AGG | - | chr1_1:55669298-55669317 | None:intergenic | 20.0% |
| !! | ACTTGATTATAAACAAAACA+AGG | - | chr1_1:55669863-55669882 | None:intergenic | 20.0% |
| !!! | TAGTTACAATTTTTTTTTCC+AGG | + | chr1_1:55669931-55669950 | Msa0029910:intron | 20.0% |
| !!! | AGTTACAATTTTTTTTTCCA+GGG | + | chr1_1:55669932-55669951 | Msa0029910:intron | 20.0% |
| !!! | TGTTTAAGGTTTTAATTTTC+TGG | + | chr1_1:55670224-55670243 | Msa0029910:CDS | 20.0% |
| !! | TTTATGTTTAAGTATGTACA+AGG | + | chr1_1:55670332-55670351 | Msa0029910:intron | 20.0% |
| !! | TATGATCATATAAAGAAAAC+TGG | + | chr1_1:55670485-55670504 | Msa0029910:CDS | 20.0% |
| !! | TTGTAATTTCATGTTATCTT+TGG | + | chr1_1:55670937-55670956 | Msa0029910:intron | 20.0% |
| !!! | TTTCTTCTTAGTTTTCTTTA+TGG | + | chr1_1:55671600-55671619 | Msa0029910:three_prime_UTR | 20.0% |
| !!! | ATTTAAGTTATCTGTTCTAA+AGG | + | chr1_1:55671779-55671798 | Msa0029910:three_prime_UTR | 20.0% |
| !!! | AATCTTTTTTCAACATTGCT+GGG | + | chr1_1:55666227-55666246 | Msa0029910:CDS | 25.0% |
| !!! | TAGAAAAGTTGGTAGAAAAT+AGG | + | chr1_1:55666957-55666976 | Msa0029910:intron | 25.0% |
| !! | TTTTCGAATGATTTCTCTAA+TGG | - | chr1_1:55667092-55667111 | None:intergenic | 25.0% |
| ! | ATTAGAGAAATCATTCGAAA+AGG | + | chr1_1:55667091-55667110 | Msa0029910:intron | 25.0% |
| !! | CCAACTTTTAATATATCTCT+CGG | + | chr1_1:55667259-55667278 | Msa0029910:intron | 25.0% |
| ! | CTTGAAATTAAGGAGTTAAA+AGG | - | chr1_1:55667999-55668018 | None:intergenic | 25.0% |
| !!! | CTTTTAACTCCTTAATTTCA+AGG | + | chr1_1:55667997-55668016 | Msa0029910:intron | 25.0% |
| !! | TCAAGGGTTAAATATGTTTT+TGG | + | chr1_1:55668014-55668033 | Msa0029910:intron | 25.0% |
| ! | AAACAAATTTGGATTGAGTA+AGG | - | chr1_1:55668133-55668152 | None:intergenic | 25.0% |
| !!! | TTTTACGATATTTTTTTCGG+AGG | - | chr1_1:55668225-55668244 | None:intergenic | 25.0% |
| !! | TTAGAAGGTTGCAATTTTAT+AGG | + | chr1_1:55668513-55668532 | Msa0029910:intron | 25.0% |
| !! | TAGAAGGTTGCAATTTTATA+GGG | + | chr1_1:55668514-55668533 | Msa0029910:intron | 25.0% |
| !!! | TTTTTTAACATGTACCCTTA+GGG | - | chr1_1:55668595-55668614 | None:intergenic | 25.0% |
| !!! | TTTTTTTAACATGTACCCTT+AGG | - | chr1_1:55668596-55668615 | None:intergenic | 25.0% |
| ! | AAAAAAGAACAACTTTGCAT+TGG | + | chr1_1:55668617-55668636 | Msa0029910:intron | 25.0% |
| !!! | GTTTTTCTTTGTTTCAATTG+TGG | - | chr1_1:55668821-55668840 | None:intergenic | 25.0% |
| ! | AAACCTTATCCATAAAGATT+TGG | + | chr1_1:55668837-55668856 | Msa0029910:intron | 25.0% |
| !!! | ATAAAGTTTTGATGAGTTCA+AGG | + | chr1_1:55668988-55669007 | Msa0029910:intron | 25.0% |
| ! | TTCAATGAAGATCTTTCTTA+AGG | + | chr1_1:55669220-55669239 | Msa0029910:intron | 25.0% |
| ! | TCAATGAAGATCTTTCTTAA+GGG | + | chr1_1:55669221-55669240 | Msa0029910:intron | 25.0% |
| !!! | AATAGTTTGACAGGTTTTTT+AGG | - | chr1_1:55669411-55669430 | None:intergenic | 25.0% |
| !! | AAAACATCGCAATGAAATTT+TGG | + | chr1_1:55669585-55669604 | Msa0029910:CDS | 25.0% |
| ! | GGAAGAAAATACTTCAATTT+GGG | - | chr1_1:55670111-55670130 | None:intergenic | 25.0% |
| ! | ATGTACTTGATACCTTTAAT+GGG | - | chr1_1:55670626-55670645 | None:intergenic | 25.0% |
| ! | TATGTACTTGATACCTTTAA+TGG | - | chr1_1:55670627-55670646 | None:intergenic | 25.0% |
| !!! | TAAAGGTATCAAGTACATAA+AGG | + | chr1_1:55670628-55670647 | Msa0029910:CDS | 25.0% |
| !! | ATTCCATATGATTCAAGTTT+GGG | + | chr1_1:55670724-55670743 | Msa0029910:CDS | 25.0% |
| ! | AATGACACAAGAATTAATGT+GGG | + | chr1_1:55670787-55670806 | Msa0029910:CDS | 25.0% |
| ! | ATATTAAATGGGTACGTATT+CGG | + | chr1_1:55670840-55670859 | Msa0029910:intron | 25.0% |
| !! | TTATCTTTGGAAATTGAAGA+AGG | + | chr1_1:55670950-55670969 | Msa0029910:intron | 25.0% |
| ! | AAGATTTTGTGTGTTTTGTG+TGG | - | chr1_1:55666008-55666027 | None:intergenic | 30.0% |
| ! | AAAATTACTCTTGTGGGTTA+TGG | - | chr1_1:55666041-55666060 | None:intergenic | 30.0% |
| TGCACTAAAATTACTCTTGT+GGG | - | chr1_1:55666047-55666066 | None:intergenic | 30.0% | |
| ! | CATCAAATTTAGTGTCACTA+TGG | - | chr1_1:55666204-55666223 | None:intergenic | 30.0% |
| !!! | GAATCTTTTTTCAACATTGC+TGG | + | chr1_1:55666226-55666245 | Msa0029910:CDS | 30.0% |
| TGAAATGTAACTTCAGCAAA+AGG | + | chr1_1:55666489-55666508 | Msa0029910:intron | 30.0% | |
| ATATCTAAACCGTGTAACTT+GGG | - | chr1_1:55666561-55666580 | None:intergenic | 30.0% | |
| TTACACGGTTTAGATATCTT+GGG | + | chr1_1:55666564-55666583 | Msa0029910:intron | 30.0% | |
| !!! | TTCTCCGTCATTTTTTACTA+TGG | - | chr1_1:55666591-55666610 | None:intergenic | 30.0% |
| ! | TCTACCAACTTTTCTACTAT+AGG | - | chr1_1:55666953-55666972 | None:intergenic | 30.0% |
| TTGATCTACTCTTCTTACAA+CGG | - | chr1_1:55667023-55667042 | None:intergenic | 30.0% | |
| TGTAAGAAGAGTAGATCAAA+TGG | + | chr1_1:55667024-55667043 | Msa0029910:intron | 30.0% | |
| ATTTCTCTAATGGTTCTCTT+AGG | - | chr1_1:55667082-55667101 | None:intergenic | 30.0% | |
| AATCATTCGAAAAGGTTTAG+AGG | + | chr1_1:55667099-55667118 | Msa0029910:intron | 30.0% | |
| ! | CAATGAGTTGGATCTAAATA+TGG | + | chr1_1:55667123-55667142 | Msa0029910:intron | 30.0% |
| CCGAGAGATATATTAAAAGT+TGG | - | chr1_1:55667262-55667281 | None:intergenic | 30.0% | |
| TATAATTATCAGGGACATCA+AGG | + | chr1_1:55667329-55667348 | Msa0029910:intron | 30.0% | |
| ! | TTTGAAGCAAATTAACTCTG+AGG | + | chr1_1:55667412-55667431 | Msa0029910:CDS | 30.0% |
| ! | ATTGTTATTAGAGAGAGCAA+AGG | - | chr1_1:55667590-55667609 | None:intergenic | 30.0% |
| TTGCTCTCTCTAATAACAAT+TGG | + | chr1_1:55667590-55667609 | Msa0029910:intron | 30.0% | |
| ATCTCTCCAAATAGAAGAAA+TGG | - | chr1_1:55667832-55667851 | None:intergenic | 30.0% | |
| ! | TAGAAGGTCGCAATTTTATA+GGG | - | chr1_1:55668041-55668060 | None:intergenic | 30.0% |
| ! | TTAGAAGGTCGCAATTTTAT+AGG | - | chr1_1:55668042-55668061 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTAGA+AGG | - | chr1_1:55668498-55668517 | None:intergenic | 30.0% | |
| !!! | GAGTGCAGAAATTTTTTGTA+GGG | - | chr1_1:55668101-55668120 | None:intergenic | 30.0% |
| !!! | TGAGTGCAGAAATTTTTTGT+AGG | - | chr1_1:55668102-55668121 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTAGA+AGG | + | chr1_1:55668498-55668517 | Msa0029910:intron | 30.0% | |
| TCCTTAACTAATTGAAGCTA+GGG | - | chr1_1:55668557-55668576 | None:intergenic | 30.0% | |
| ATCCTTAACTAATTGAAGCT+AGG | - | chr1_1:55668558-55668577 | None:intergenic | 30.0% | |
| TCATATTAACTAATGCCCTA+AGG | + | chr1_1:55668577-55668596 | Msa0029910:intron | 30.0% | |
| CATATTAACTAATGCCCTAA+GGG | + | chr1_1:55668578-55668597 | Msa0029910:intron | 30.0% | |
| GTACCAAATCTTTATGGATA+AGG | - | chr1_1:55668843-55668862 | None:intergenic | 30.0% | |
| GAATTGGTACCAAATCTTTA+TGG | - | chr1_1:55668849-55668868 | None:intergenic | 30.0% | |
| TAAATATGTTGGGATGATCT+TGG | - | chr1_1:55668894-55668913 | None:intergenic | 30.0% | |
| ! | AAGTTTTCAGAAGGATGTTT+TGG | - | chr1_1:55669289-55669308 | None:intergenic | 30.0% |
| AAAACCTGTCAAACTATTCA+TGG | + | chr1_1:55669413-55669432 | Msa0029910:CDS | 30.0% | |
| AAACCTGTCAAACTATTCAT+GGG | + | chr1_1:55669414-55669433 | Msa0029910:CDS | 30.0% | |
| CTTGATTATGCCTAATGATT+TGG | - | chr1_1:55669530-55669549 | None:intergenic | 30.0% | |
| CATTGAAATCATCATTGAGT+TGG | + | chr1_1:55669642-55669661 | Msa0029910:CDS | 30.0% | |
| ! | AATTCCCAGTTGATGTATAT+TGG | + | chr1_1:55669725-55669744 | Msa0029910:CDS | 30.0% |
| ! | ATTCCCAGTTGATGTATATT+GGG | + | chr1_1:55669726-55669745 | Msa0029910:CDS | 30.0% |
| TAACCCAATATACATCAACT+GGG | - | chr1_1:55669732-55669751 | None:intergenic | 30.0% | |
| ATAACCCAATATACATCAAC+TGG | - | chr1_1:55669733-55669752 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTCCAGGGATAAG+AGG | + | chr1_1:55669940-55669959 | Msa0029910:intron | 30.0% |
| ! | AGGCAGAATTTATCTCATTT+TGG | + | chr1_1:55669960-55669979 | Msa0029910:CDS | 30.0% |
| ACATCATAATCAGCAAATTG+AGG | + | chr1_1:55669994-55670013 | Msa0029910:CDS | 30.0% | |
| ! | GATTATAGCTTGACACATTT+TGG | + | chr1_1:55670050-55670069 | Msa0029910:intron | 30.0% |
| GGGAAGAAAATACTTCAATT+TGG | - | chr1_1:55670112-55670131 | None:intergenic | 30.0% | |
| ! | GTATTTTCTTCCCATATTGA+TGG | + | chr1_1:55670119-55670138 | Msa0029910:intron | 30.0% |
| !! | GGAAATTATGGAAGTGTTTA+AGG | + | chr1_1:55670210-55670229 | Msa0029910:CDS | 30.0% |
| TGTTTAAGTATGTACAAGGT+TGG | + | chr1_1:55670336-55670355 | Msa0029910:intron | 30.0% | |
| TCAAAATTGAGATGTCTTCT+TGG | - | chr1_1:55670457-55670476 | None:intergenic | 30.0% | |
| ! | CATTCCATATGATTCAAGTT+TGG | + | chr1_1:55670723-55670742 | Msa0029910:CDS | 30.0% |
| ! | TTCCATATGATTCAAGTTTG+GGG | + | chr1_1:55670725-55670744 | Msa0029910:CDS | 30.0% |
| !! | CATTGATTCTTCTTTGGATT+TGG | - | chr1_1:55670771-55670790 | None:intergenic | 30.0% |
| !! | TTGTGTCATTGATTCTTCTT+TGG | - | chr1_1:55670777-55670796 | None:intergenic | 30.0% |
| CAATGACACAAGAATTAATG+TGG | + | chr1_1:55670786-55670805 | Msa0029910:CDS | 30.0% | |
| GAAAAGTCTGTCATCATTTA+TGG | + | chr1_1:55670975-55670994 | Msa0029910:CDS | 30.0% | |
| ! | TTCAATTGACCTATTTTGCT+TGG | + | chr1_1:55671082-55671101 | Msa0029910:CDS | 30.0% |
| CAAAAGTTGTTAACCACATT+TGG | - | chr1_1:55671119-55671138 | None:intergenic | 30.0% | |
| ! | CAAATGTGGTTAACAACTTT+TGG | + | chr1_1:55671117-55671136 | Msa0029910:CDS | 30.0% |
| !! | GGTTAACAACTTTTGGAAAA+AGG | + | chr1_1:55671124-55671143 | Msa0029910:CDS | 30.0% |
| TTTCTTACAAGAATGAGACT+GGG | + | chr1_1:55671216-55671235 | Msa0029910:CDS | 30.0% | |
| ATTTAGAGAACATCATCACA+AGG | + | chr1_1:55671361-55671380 | Msa0029910:CDS | 30.0% | |
| ! | GGAATTTTTCCAGCAATATT+GGG | - | chr1_1:55671425-55671444 | None:intergenic | 30.0% |
| ! | TGGAATTTTTCCAGCAATAT+TGG | - | chr1_1:55671426-55671445 | None:intergenic | 30.0% |
| TCACAAATGCAACTAGAATA+AGG | + | chr1_1:55671712-55671731 | Msa0029910:three_prime_UTR | 30.0% | |
| GTGCACTAAAATTACTCTTG+TGG | - | chr1_1:55666048-55666067 | None:intergenic | 35.0% | |
| CAGACATGGTTAAATGGTTA+TGG | - | chr1_1:55666144-55666163 | None:intergenic | 35.0% | |
| CAGAACGTTATCAACAACAT+GGG | - | chr1_1:55666272-55666291 | None:intergenic | 35.0% | |
| ATATCATACCCCAAGTTACA+CGG | + | chr1_1:55666549-55666568 | Msa0029910:intron | 35.0% | |
| TATCTAAACCGTGTAACTTG+GGG | - | chr1_1:55666560-55666579 | None:intergenic | 35.0% | |
| GATATCTAAACCGTGTAACT+TGG | - | chr1_1:55666562-55666581 | None:intergenic | 35.0% | |
| GTTACACGGTTTAGATATCT+TGG | + | chr1_1:55666563-55666582 | Msa0029910:intron | 35.0% | |
| GGGTCCATAGTAAAAAATGA+CGG | + | chr1_1:55666584-55666603 | Msa0029910:intron | 35.0% | |
| ! | AAAGTACCACTTAAGCTGAA+AGG | + | chr1_1:55666689-55666708 | Msa0029910:intron | 35.0% |
| AACTTTCCTTTCAGCTTAAG+TGG | - | chr1_1:55666698-55666717 | None:intergenic | 35.0% | |
| AGACTAGACATGATAGGATT+AGG | + | chr1_1:55666837-55666856 | Msa0029910:intron | 35.0% | |
| AGCACCTATAGTAGAAAAGT+TGG | + | chr1_1:55666946-55666965 | Msa0029910:intron | 35.0% | |
| TGGTAGAAAATAGGCTTAGA+TGG | + | chr1_1:55666966-55666985 | Msa0029910:intron | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | + | chr1_1:55666971-55666990 | Msa0029910:intron | 35.0% | |
| AAGAAGAGTAGATCAAATGG+AGG | + | chr1_1:55667027-55667046 | Msa0029910:intron | 35.0% | |
| AATCAGGTTAAAAGAGGTAG+AGG | + | chr1_1:55667052-55667071 | Msa0029910:intron | 35.0% | |
| ! | TGGTTTTTGATAGAACACTC+TGG | + | chr1_1:55667143-55667162 | Msa0029910:intron | 35.0% |
| ATTTGCTTCAAAGTACACAG+CGG | - | chr1_1:55667404-55667423 | None:intergenic | 35.0% | |
| !! | AAGACTAAGAGCATCTCTAA+TGG | + | chr1_1:55667523-55667542 | Msa0029910:intron | 35.0% |
| GGAGAGACTAATAAATGTAG+AGG | - | chr1_1:55667811-55667830 | None:intergenic | 35.0% | |
| GTCTCTCCATTTCTTCTATT+TGG | + | chr1_1:55667823-55667842 | Msa0029910:intron | 35.0% | |
| ! | CAAGTTTAGAGCACTATGAA+AGG | - | chr1_1:55668360-55668379 | None:intergenic | 35.0% |
| GCTAGGGTTAAATATGTTTC+TGG | - | chr1_1:55668541-55668560 | None:intergenic | 35.0% | |
| ACCCTAGCTTCAATTAGTTA+AGG | + | chr1_1:55668553-55668572 | Msa0029910:intron | 35.0% | |
| TCCTTAACATGTGTTCATCA+AGG | + | chr1_1:55668709-55668728 | Msa0029910:intron | 35.0% | |
| CCTTAACATGTGTTCATCAA+GGG | + | chr1_1:55668710-55668729 | Msa0029910:intron | 35.0% | |
| ! | GGAAAGGACAAAAGAGTTTT+CGG | - | chr1_1:55668751-55668770 | None:intergenic | 35.0% |
| ! | TTTGAAGCGATTTCAAAGGA+AGG | - | chr1_1:55668772-55668791 | None:intergenic | 35.0% |
| ! | TGTGTTTGAAGCGATTTCAA+AGG | - | chr1_1:55668776-55668795 | None:intergenic | 35.0% |
| ! | TTGTGGGCTAATTTGAGAAA+AGG | - | chr1_1:55668804-55668823 | None:intergenic | 35.0% |
| ! | AACTATTCATGGGTTGCAAA+AGG | + | chr1_1:55669424-55669443 | Msa0029910:CDS | 35.0% |
| !!! | CGATGTTTTTTCAATGCTTC+AGG | - | chr1_1:55669574-55669593 | None:intergenic | 35.0% |
| AGAATTTGATCAAGGCAACT+TGG | + | chr1_1:55669614-55669633 | Msa0029910:CDS | 35.0% | |
| TCACAATGCACTATACAGAT+TGG | + | chr1_1:55670026-55670045 | Msa0029910:CDS | 35.0% | |
| CAGAGTATAACAAGTTACTC+AGG | + | chr1_1:55670167-55670186 | Msa0029910:CDS | 35.0% | |
| AACACTTCCATAATTTCCGT+CGG | - | chr1_1:55670208-55670227 | None:intergenic | 35.0% | |
| TTAGTCGAACCATCATAGAT+GGG | - | chr1_1:55670268-55670287 | None:intergenic | 35.0% | |
| TTTAGTCGAACCATCATAGA+TGG | - | chr1_1:55670269-55670288 | None:intergenic | 35.0% | |
| !! | TATCGAAGTGCTGAAAAAGA+AGG | + | chr1_1:55670397-55670416 | Msa0029910:CDS | 35.0% |
| GTTCTTGTTCATTTCAACTC+TGG | + | chr1_1:55670424-55670443 | Msa0029910:CDS | 35.0% | |
| AAGTGATGCAAAACATACCA+AGG | - | chr1_1:55670599-55670618 | None:intergenic | 35.0% | |
| AGGTATCAAGTACATAAAGG+AGG | + | chr1_1:55670631-55670650 | Msa0029910:CDS | 35.0% | |
| GGACTCAACACAAGAAATAA+AGG | - | chr1_1:55670677-55670696 | None:intergenic | 35.0% | |
| TGATGTAGAATCTTTCCTTG+TGG | - | chr1_1:55670698-55670717 | None:intergenic | 35.0% | |
| ! | ATTCAAGTTTGGGGAGTAAA+GGG | + | chr1_1:55670734-55670753 | Msa0029910:CDS | 35.0% |
| ! | CTTCTTTGGATTTGGAGTAA+GGG | - | chr1_1:55670763-55670782 | None:intergenic | 35.0% |
| ! | TCTTCTTTGGATTTGGAGTA+AGG | - | chr1_1:55670764-55670783 | None:intergenic | 35.0% |
| ! | TCTTTGGAAATTGAAGAAGG+AGG | + | chr1_1:55670953-55670972 | Msa0029910:intron | 35.0% |
| CAACAATTCACTAAGTATGC+TGG | + | chr1_1:55671020-55671039 | Msa0029910:CDS | 35.0% | |
| !! | GTTTGTTTTCTCATGCATCT+TGG | - | chr1_1:55671168-55671187 | None:intergenic | 35.0% |
| AACAAACACTGTTACACAAC+TGG | + | chr1_1:55671181-55671200 | Msa0029910:CDS | 35.0% | |
| CTTTCTTACAAGAATGAGAC+TGG | + | chr1_1:55671215-55671234 | Msa0029910:CDS | 35.0% | |
| ATTGTGACTTCTGTTGATCA+TGG | + | chr1_1:55671263-55671282 | Msa0029910:CDS | 35.0% | |
| TTGTGACTTCTGTTGATCAT+GGG | + | chr1_1:55671264-55671283 | Msa0029910:CDS | 35.0% | |
| GTTTGACAAATGGAAAGATG+TGG | + | chr1_1:55671313-55671332 | Msa0029910:CDS | 35.0% | |
| AAAGATGTGGCGATCAATAA+GGG | + | chr1_1:55671326-55671345 | Msa0029910:CDS | 35.0% | |
| TAGGTGAGAGCAAATATGAA+CGG | - | chr1_1:55671396-55671415 | None:intergenic | 35.0% | |
| TAATAAACACTTCCATTGCG+CGG | - | chr1_1:55671475-55671494 | None:intergenic | 35.0% | |
| ! | CAATGATAATGCAAGACTCA+TGG | - | chr1_1:55671680-55671699 | None:intergenic | 35.0% |
| TGTGAATAAGTGATCGCACT+AGG | - | chr1_1:55666099-55666118 | None:intergenic | 40.0% | |
| GTGCGATCACTTATTCACAT+TGG | + | chr1_1:55666100-55666119 | Msa0029910:CDS | 40.0% | |
| GCTCATCAGACATGGTTAAA+TGG | - | chr1_1:55666150-55666169 | None:intergenic | 40.0% | |
| CAAAATGTGCTCATCAGACA+TGG | - | chr1_1:55666158-55666177 | None:intergenic | 40.0% | |
| ! | CATGTCTGATGAGCACATTT+TGG | + | chr1_1:55666156-55666175 | Msa0029910:CDS | 40.0% |
| GCAGAACGTTATCAACAACA+TGG | - | chr1_1:55666273-55666292 | None:intergenic | 40.0% | |
| ! | GCAGATGATATAGTCTTGCT+TGG | + | chr1_1:55666371-55666390 | Msa0029910:intron | 40.0% |
| AACTTCAGCAAAAGGAGAAG+TGG | + | chr1_1:55666497-55666516 | Msa0029910:intron | 40.0% | |
| ACTTCAGCAAAAGGAGAAGT+GGG | + | chr1_1:55666498-55666517 | Msa0029910:intron | 40.0% | |
| GTACATCATCGTATTCAAGC+CGG | + | chr1_1:55666623-55666642 | Msa0029910:intron | 40.0% | |
| TACATCATCGTATTCAAGCC+GGG | + | chr1_1:55666624-55666643 | Msa0029910:intron | 40.0% | |
| GTGGTAAGACTAGACATGAT+AGG | + | chr1_1:55666831-55666850 | Msa0029910:intron | 40.0% | |
| TCTTCTTACAACGGCATCTA+CGG | - | chr1_1:55667014-55667033 | None:intergenic | 40.0% | |
| AGATCAAATGGAGGAGAATC+AGG | + | chr1_1:55667036-55667055 | Msa0029910:intron | 40.0% | |
| GAGGAGAATCAGGTTAAAAG+AGG | + | chr1_1:55667046-55667065 | Msa0029910:intron | 40.0% | |
| AGGTTTAGAGGTCAATGAGT+TGG | + | chr1_1:55667111-55667130 | Msa0029910:intron | 40.0% | |
| AATTATCAGGGACATCAAGG+AGG | + | chr1_1:55667332-55667351 | Msa0029910:intron | 40.0% | |
| ! | GTGGATTAATGTTATCCAGG+TGG | - | chr1_1:55667364-55667383 | None:intergenic | 40.0% |
| ! | AATGGGTTCTACCACTAAGT+GGG | - | chr1_1:55667889-55667908 | None:intergenic | 40.0% |
| !! | TAATGGGTTCTACCACTAAG+TGG | - | chr1_1:55667890-55667909 | None:intergenic | 40.0% |
| CCCTTGATGAACACATGTTA+AGG | - | chr1_1:55668713-55668732 | None:intergenic | 40.0% | |
| AGCGATTTCAAAGGAAGGAA+AGG | - | chr1_1:55668767-55668786 | None:intergenic | 40.0% | |
| TTAGAGCTGTAGCGAAGAAT+TGG | - | chr1_1:55668865-55668884 | None:intergenic | 40.0% | |
| AGATGCGCAACTAGATTAGT+TGG | - | chr1_1:55669037-55669056 | None:intergenic | 40.0% | |
| ! | TTGTAAGCTATTTCCTCACC+TGG | - | chr1_1:55669373-55669392 | None:intergenic | 40.0% |
| CAACCCATGAATAGTTTGAC+AGG | - | chr1_1:55669420-55669439 | None:intergenic | 40.0% | |
| CCAGAAATCTCCATACTCAA+GGG | - | chr1_1:55669473-55669492 | None:intergenic | 40.0% | |
| GAACCACTTGCCAAATCATT+AGG | + | chr1_1:55669517-55669536 | Msa0029910:CDS | 40.0% | |
| ! | ATGCCTAATGATTTGGCAAG+TGG | - | chr1_1:55669523-55669542 | None:intergenic | 40.0% |
| GGAGCTCAAGAATTTGATCA+AGG | + | chr1_1:55669606-55669625 | Msa0029910:CDS | 40.0% | |
| CTGAGCAACAATTGCAACAA+TGG | - | chr1_1:55669761-55669780 | None:intergenic | 40.0% | |
| !! | AGCACTGATGTGATACATCA+TGG | + | chr1_1:55669822-55669841 | Msa0029910:intron | 40.0% |
| TAAATTCTGCCTCTTATCCC+TGG | - | chr1_1:55669952-55669971 | None:intergenic | 40.0% | |
| ACACTTCCATAATTTCCGTC+GGG | - | chr1_1:55670207-55670226 | None:intergenic | 40.0% | |
| TGATGGTTCGACTAAAACAC+TGG | + | chr1_1:55670273-55670292 | Msa0029910:CDS | 40.0% | |
| AAGCCAACACAAGATTGTGT+GGG | + | chr1_1:55670508-55670527 | Msa0029910:CDS | 40.0% | |
| TCATTCCATTCCTCCACAAT+GGG | - | chr1_1:55670536-55670555 | None:intergenic | 40.0% | |
| ATCATTCCATTCCTCCACAA+TGG | - | chr1_1:55670537-55670556 | None:intergenic | 40.0% | |
| !! | CTTTGAAGTCAAAGATGCCT+TGG | + | chr1_1:55670579-55670598 | Msa0029910:CDS | 40.0% |
| CATCACTTTGCACCCATTAA+AGG | + | chr1_1:55670611-55670630 | Msa0029910:CDS | 40.0% | |
| TTTCTTGTGTTGAGTCCACA+AGG | + | chr1_1:55670680-55670699 | Msa0029910:CDS | 40.0% | |
| CTCCCCAAACTTGAATCATA+TGG | - | chr1_1:55670730-55670749 | None:intergenic | 40.0% | |
| ! | GATTCAAGTTTGGGGAGTAA+AGG | + | chr1_1:55670733-55670752 | Msa0029910:CDS | 40.0% |
| TATATCAATGTCAGCCAGCA+GGG | - | chr1_1:55670819-55670838 | None:intergenic | 40.0% | |
| TTATATCAATGTCAGCCAGC+AGG | - | chr1_1:55670820-55670839 | None:intergenic | 40.0% | |
| ! | AATAGCGGCATCATTTGCTA+GGG | - | chr1_1:55671048-55671067 | None:intergenic | 40.0% |
| TAATAGCGGCATCATTTGCT+AGG | - | chr1_1:55671049-55671068 | None:intergenic | 40.0% | |
| AGTCTTCGTCTGCTTAATAG+CGG | - | chr1_1:55671063-55671082 | None:intergenic | 40.0% | |
| GTTGAGACTCCAAGCAAAAT+AGG | - | chr1_1:55671094-55671113 | None:intergenic | 40.0% | |
| TTACAAGAATGAGACTGGGT+GGG | + | chr1_1:55671220-55671239 | Msa0029910:CDS | 40.0% | |
| AGAAGTCACAATAGACCCTT+TGG | - | chr1_1:55671255-55671274 | None:intergenic | 40.0% | |
| ! | CAGTGTTCGAGTTTGACAAA+TGG | + | chr1_1:55671303-55671322 | Msa0029910:CDS | 40.0% |
| GAAAGATGTGGCGATCAATA+AGG | + | chr1_1:55671325-55671344 | Msa0029910:CDS | 40.0% | |
| CAGCAATATTGGGAATCTCT+AGG | - | chr1_1:55671415-55671434 | None:intergenic | 40.0% | |
| CTAGAGATTCCCAATATTGC+TGG | + | chr1_1:55671413-55671432 | Msa0029910:CDS | 40.0% | |
| TCTGGACACTCGATAAAATC+TGG | - | chr1_1:55671446-55671465 | None:intergenic | 40.0% | |
| ! | AGCTACAAGTGTTGCCATAA+CGG | + | chr1_1:55671494-55671513 | Msa0029910:CDS | 40.0% |
| CTCATGGCTACATTGCTTAA+GGG | - | chr1_1:55671664-55671683 | None:intergenic | 40.0% | |
| ACTCATGGCTACATTGCTTA+AGG | - | chr1_1:55671665-55671684 | None:intergenic | 40.0% | |
| ! | CAACATGGGTTGAACGTGTA+AGG | - | chr1_1:55666258-55666277 | None:intergenic | 45.0% |
| TAAACGAGAGGCTAGAGACT+TGG | + | chr1_1:55666411-55666430 | Msa0029910:intron | 45.0% | |
| TCTACCTTGGAGGTGAAAGT+TGG | + | chr1_1:55666521-55666540 | Msa0029910:intron | 45.0% | |
| ATCTCCAACTTTCACCTCCA+AGG | - | chr1_1:55666528-55666547 | None:intergenic | 45.0% | |
| TCTTCTCCATTTCAACCACC+CGG | - | chr1_1:55666645-55666664 | None:intergenic | 45.0% | |
| TTGAAATGGAGAAGAGCCTC+AGG | + | chr1_1:55666650-55666669 | Msa0029910:intron | 45.0% | |
| CTTATCGCACAAAACACCTG+AGG | - | chr1_1:55666669-55666688 | None:intergenic | 45.0% | |
| ACCGGCAATGTTGTATGGTA+CGG | + | chr1_1:55666736-55666755 | Msa0029910:intron | 45.0% | |
| TCCGTACCATACAACATTGC+CGG | - | chr1_1:55666740-55666759 | None:intergenic | 45.0% | |
| TGTTGTATGGTACGGAGTGT+TGG | + | chr1_1:55666744-55666763 | Msa0029910:intron | 45.0% | |
| ! | GTTGTATGGTACGGAGTGTT+GGG | + | chr1_1:55666745-55666764 | Msa0029910:intron | 45.0% |
| CGCTTACTTTACTCTCGTGT+TGG | - | chr1_1:55666781-55666800 | None:intergenic | 45.0% | |
| CGAGAGTAAAGTAAGCGTAG+CGG | + | chr1_1:55666784-55666803 | Msa0029910:intron | 45.0% | |
| CTCTCTCTCTCTCTCTCTAA+TGG | - | chr1_1:55666870-55666889 | None:intergenic | 45.0% | |
| CTTCTTACAACGGCATCTAC+GGG | - | chr1_1:55667013-55667032 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr1_1:55667192-55667211 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr1_1:55667193-55667212 | None:intergenic | 45.0% |
| ! | TCAAGCCTTATCCCACTAAG+TGG | - | chr1_1:55667194-55667213 | None:intergenic | 45.0% |
| !! | CGGGTGGATTAATGTTATCC+AGG | - | chr1_1:55667367-55667386 | None:intergenic | 45.0% |
| ! | TAGTAGTGGAACCCACTTAG+TGG | + | chr1_1:55667875-55667894 | Msa0029910:intron | 45.0% |
| ATGATGGCAGATGTCATGCA+AGG | + | chr1_1:55669345-55669364 | Msa0029910:intron | 45.0% | |
| !! | TCTGCTTTTGCCCTTGAGTA+TGG | + | chr1_1:55669460-55669479 | Msa0029910:CDS | 45.0% |
| CCCTTGAGTATGGAGATTTC+TGG | + | chr1_1:55669470-55669489 | Msa0029910:CDS | 45.0% | |
| GCCAGAAATCTCCATACTCA+AGG | - | chr1_1:55669474-55669493 | None:intergenic | 45.0% | |
| ! | GATTTGGCAAGTGGTTCTGT+TGG | - | chr1_1:55669514-55669533 | None:intergenic | 45.0% |
| ACTGGGAATTGTTCCAAAGC+TGG | - | chr1_1:55669715-55669734 | None:intergenic | 45.0% | |
| TCAAACCCCGACGGAAATTA+TGG | + | chr1_1:55670198-55670217 | Msa0029910:CDS | 45.0% | |
| CACTTCCATAATTTCCGTCG+GGG | - | chr1_1:55670206-55670225 | None:intergenic | 45.0% | |
| ! | CCATCATAGATGGGAGCTTT+TGG | - | chr1_1:55670259-55670278 | None:intergenic | 45.0% |
| CCAAAAGCTCCCATCTATGA+TGG | + | chr1_1:55670256-55670275 | Msa0029910:CDS | 45.0% | |
| GAAGCCAACACAAGATTGTG+TGG | + | chr1_1:55670507-55670526 | Msa0029910:CDS | 45.0% | |
| GAACCCACACAATCTTGTGT+TGG | - | chr1_1:55670514-55670533 | None:intergenic | 45.0% | |
| CTTACAAGAATGAGACTGGG+TGG | + | chr1_1:55671219-55671238 | Msa0029910:CDS | 45.0% | |
| GGTGGGCAATTGTAACCAAA+GGG | + | chr1_1:55671237-55671256 | Msa0029910:CDS | 45.0% | |
| TAAGGCCAATGGCAAGCATT+AGG | + | chr1_1:55671520-55671539 | Msa0029910:CDS | 45.0% | |
| AGCTACCTAATGCTTGCCAT+TGG | - | chr1_1:55671528-55671547 | None:intergenic | 45.0% | |
| CAAGCATTAGGTAGCTTCAC+TGG | + | chr1_1:55671532-55671551 | Msa0029910:intron | 45.0% | |
| !! | TAGGTAGCTTCACTGGTCTT+TGG | + | chr1_1:55671539-55671558 | Msa0029910:intron | 45.0% |
| !! | AATAAAATGAAAAAAAAAAA+TGG | - | chr1_1:55666323-55666342 | None:intergenic | 5.0% |
| !!! | TGTTATAATTTTATTTTAAA+TGG | - | chr1_1:55668945-55668964 | None:intergenic | 5.0% |
| ! | TAGTCTTGCTTGGTGAGTCG+AGG | + | chr1_1:55666381-55666400 | Msa0029910:intron | 50.0% |
| ! | AGTCTTGCTTGGTGAGTCGA+GGG | + | chr1_1:55666382-55666401 | Msa0029910:intron | 50.0% |
| ! | AGGCAAGCCTTAGAAGCGTA+TGG | + | chr1_1:55666434-55666453 | Msa0029910:intron | 50.0% |
| ACTCCGTCTTGCTTCTACTC+AGG | - | chr1_1:55666466-55666485 | None:intergenic | 50.0% | |
| AAGGAGAAGTGGGTCTACCT+TGG | + | chr1_1:55666508-55666527 | Msa0029910:intron | 50.0% | |
| ATCATCGTATTCAAGCCGGG+TGG | + | chr1_1:55666627-55666646 | Msa0029910:intron | 50.0% | |
| TTCAAGCCGGGTGGTTGAAA+TGG | + | chr1_1:55666636-55666655 | Msa0029910:intron | 50.0% | |
| CTATCGAACAGCAGTCAGAC+CGG | + | chr1_1:55666718-55666737 | Msa0029910:intron | 50.0% | |
| GTCAGACCGGCAATGTTGTA+TGG | + | chr1_1:55666731-55666750 | Msa0029910:intron | 50.0% | |
| ! | AAGTAAGCGTAGCGGAGATG+AGG | + | chr1_1:55666792-55666811 | Msa0029910:intron | 50.0% |
| AGGATGTTGCGTTGGATGAG+TGG | + | chr1_1:55666812-55666831 | Msa0029910:intron | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr1_1:55666872-55666891 | Msa0029910:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | + | chr1_1:55666873-55666892 | Msa0029910:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr1_1:55667188-55667207 | None:intergenic | 50.0% | |
| ! | TGGCAAGTGGTTCTGTTGGT+TGG | - | chr1_1:55669510-55669529 | None:intergenic | 50.0% |
| GCTTCAGGCTTCGAAAGTTG+AGG | - | chr1_1:55669559-55669578 | None:intergenic | 50.0% | |
| CAACTCGCGTCATGACATCA+AGG | + | chr1_1:55669672-55669691 | Msa0029910:CDS | 50.0% | |
| GAAGCTCTTTCAAACCCCGA+CGG | + | chr1_1:55670189-55670208 | Msa0029910:CDS | 50.0% | |
| GATTGTGTGGGTTCCCATTG+TGG | + | chr1_1:55670520-55670539 | Msa0029910:CDS | 50.0% | |
| !! | AATGTGGGTTGATTCCCTGC+TGG | + | chr1_1:55670802-55670821 | Msa0029910:CDS | 50.0% |
| GGAGTCTCAACAGCCAAATG+TGG | + | chr1_1:55671103-55671122 | Msa0029910:CDS | 50.0% | |
| GGGTGGGCAATTGTAACCAA+AGG | + | chr1_1:55671236-55671255 | Msa0029910:CDS | 50.0% | |
| GTGTTGCCATAACGGCGATA+AGG | + | chr1_1:55671502-55671521 | Msa0029910:CDS | 50.0% | |
| !! | CATTGGCCTTATCGCCGTTA+TGG | - | chr1_1:55671511-55671530 | None:intergenic | 50.0% |
| CATAACGGCGATAAGGCCAA+TGG | + | chr1_1:55671509-55671528 | Msa0029910:CDS | 50.0% | |
| !! | GCTTCACTGGTCTTTGGCAT+TGG | + | chr1_1:55671545-55671564 | Msa0029910:intron | 50.0% |
| CGAGGGAGGAGTTAAACGAG+AGG | + | chr1_1:55666399-55666418 | Msa0029910:intron | 55.0% | |
| ACGAGAGGCTAGAGACTTGG+AGG | + | chr1_1:55666414-55666433 | Msa0029910:intron | 55.0% | |
| GCGGAAGCCATACGCTTCTA+AGG | - | chr1_1:55666444-55666463 | None:intergenic | 55.0% | |
| CCGTCTTGCTTCTACTCAGG+CGG | - | chr1_1:55666463-55666482 | None:intergenic | 55.0% | |
| CCGCCTGAGTAGAAGCAAGA+CGG | + | chr1_1:55666460-55666479 | Msa0029910:intron | 55.0% | |
| GAGAAGTGGGTCTACCTTGG+AGG | + | chr1_1:55666511-55666530 | Msa0029910:intron | 55.0% | |
| !! | GTATGGTACGGAGTGTTGGG+TGG | + | chr1_1:55666748-55666767 | Msa0029910:intron | 55.0% |
| CGGAGATGAGGATGTTGCGT+TGG | + | chr1_1:55666804-55666823 | Msa0029910:intron | 55.0% | |
| AGAGAGAGAGAGAGAGAGGG+AGG | + | chr1_1:55666922-55666941 | Msa0029910:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr1_1:55667180-55667199 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr1_1:55667179-55667198 | Msa0029910:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr1_1:55667180-55667199 | Msa0029910:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr1_1:55667186-55667205 | Msa0029910:intron | 55.0% | |
| TCAGGGACATCAAGGAGGTC+TGG | + | chr1_1:55667337-55667356 | Msa0029910:intron | 55.0% | |
| AGCGGTGAAGTGAAGCTAGC+GGG | - | chr1_1:55667386-55667405 | None:intergenic | 55.0% | |
| CAGCGGTGAAGTGAAGCTAG+CGG | - | chr1_1:55667387-55667406 | None:intergenic | 55.0% | |
| ! | CAGATGTCATGCAAGGCACC+AGG | + | chr1_1:55669352-55669371 | Msa0029910:intron | 55.0% |
| TCCAGCTCTTGCACCAGCTT+TGG | + | chr1_1:55669699-55669718 | Msa0029910:CDS | 55.0% | |
| TCCAAAGCTGGTGCAAGAGC+TGG | - | chr1_1:55669703-55669722 | None:intergenic | 55.0% | |
| TGTGTGGGTTCCCATTGTGG+AGG | + | chr1_1:55670523-55670542 | Msa0029910:CDS | 55.0% | |
| GGGTTCCCATTGTGGAGGAA+TGG | + | chr1_1:55670528-55670547 | Msa0029910:CDS | 55.0% | |
| TCCAGATTGTCACCGCGCAA+TGG | + | chr1_1:55671460-55671479 | Msa0029910:CDS | 55.0% | |
| TCCATTGCGCGGTGACAATC+TGG | - | chr1_1:55671464-55671483 | None:intergenic | 55.0% | |
| ! | CTTGCTTGGTGAGTCGAGGG+AGG | + | chr1_1:55666385-55666404 | Msa0029910:intron | 60.0% |
| TCAAGGAGGTCTGGACCACC+TGG | + | chr1_1:55667346-55667365 | Msa0029910:CDS | 60.0% | |
| GGTGAAGTGAAGCTAGCGGG+TGG | - | chr1_1:55667383-55667402 | None:intergenic | 60.0% | |
| ! | GTCATGCAAGGCACCAGGTG+AGG | + | chr1_1:55669357-55669376 | Msa0029910:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 55665999 | 55671807 | 55665999 | ID=Msa0029910;Name=Msa0029910 |
| chr1_1 | mRNA | 55665999 | 55671807 | 55665999 | ID=Msa0029910-mRNA-1;Parent=Msa0029910;Name=Msa0029910-mRNA-1;_AED=0.06;_eAED=0.06;_QI=89|1|1|1|0.71|0.87|8|246|669 |
| chr1_1 | exon | 55665999 | 55666294 | 55665999 | ID=Msa0029910-mRNA-1:exon:16607;Parent=Msa0029910-mRNA-1 |
| chr1_1 | exon | 55667341 | 55667433 | 55667341 | ID=Msa0029910-mRNA-1:exon:16608;Parent=Msa0029910-mRNA-1 |
| chr1_1 | exon | 55669355 | 55669803 | 55669355 | ID=Msa0029910-mRNA-1:exon:16609;Parent=Msa0029910-mRNA-1 |
| chr1_1 | exon | 55669953 | 55670047 | 55669953 | ID=Msa0029910-mRNA-1:exon:16610;Parent=Msa0029910-mRNA-1 |
| chr1_1 | exon | 55670161 | 55670294 | 55670161 | ID=Msa0029910-mRNA-1:exon:16611;Parent=Msa0029910-mRNA-1 |
| chr1_1 | exon | 55670392 | 55670850 | 55670392 | ID=Msa0029910-mRNA-1:exon:16612;Parent=Msa0029910-mRNA-1 |
| chr1_1 | exon | 55670969 | 55671541 | 55670969 | ID=Msa0029910-mRNA-1:exon:16613;Parent=Msa0029910-mRNA-1 |
| chr1_1 | exon | 55671562 | 55671807 | 55671562 | ID=Msa0029910-mRNA-1:exon:16614;Parent=Msa0029910-mRNA-1 |
| chr1_1 | five_prime_UTR | 55665999 | 55666087 | 55665999 | ID=Msa0029910-mRNA-1:five_prime_utr;Parent=Msa0029910-mRNA-1 |
| chr1_1 | CDS | 55666088 | 55666294 | 55666088 | ID=Msa0029910-mRNA-1:cds;Parent=Msa0029910-mRNA-1 |
| chr1_1 | CDS | 55667341 | 55667433 | 55667341 | ID=Msa0029910-mRNA-1:cds;Parent=Msa0029910-mRNA-1 |
| chr1_1 | CDS | 55669355 | 55669803 | 55669355 | ID=Msa0029910-mRNA-1:cds;Parent=Msa0029910-mRNA-1 |
| chr1_1 | CDS | 55669953 | 55670047 | 55669953 | ID=Msa0029910-mRNA-1:cds;Parent=Msa0029910-mRNA-1 |
| chr1_1 | CDS | 55670161 | 55670294 | 55670161 | ID=Msa0029910-mRNA-1:cds;Parent=Msa0029910-mRNA-1 |
| chr1_1 | CDS | 55670392 | 55670850 | 55670392 | ID=Msa0029910-mRNA-1:cds;Parent=Msa0029910-mRNA-1 |
| chr1_1 | CDS | 55670969 | 55671541 | 55670969 | ID=Msa0029910-mRNA-1:cds;Parent=Msa0029910-mRNA-1 |
| chr1_1 | three_prime_UTR | 55671562 | 55671807 | 55671562 | ID=Msa0029910-mRNA-1:three_prime_utr;Parent=Msa0029910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
