AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0171200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171200 MtrunA17_Chr1g0150541 95.433 832 36 2 1 831 1 831 0.0 1645
Msa0171200 MtrunA17_Chr2g0313171 52.011 373 176 2 121 491 403 774 8.21e-125 398
Msa0171200 MtrunA17_Chr5g0412381 53.371 356 160 3 162 515 405 756 2.09e-124 397
Msa0171200 MtrunA17_Chr5g0427301 51.852 378 177 3 136 510 497 872 1.34e-123 397
Msa0171200 MtrunA17_Chr3g0133061 52.925 359 168 1 136 494 539 896 2.45e-123 398
Msa0171200 MtrunA17_Chr4g0074041 40.705 312 171 7 181 486 92 395 1.14e-64 232
Msa0171200 MtrunA17_Chr2g0312901 36.524 397 236 10 179 566 20 409 2.96e-61 219
Msa0171200 MtrunA17_Chr6g0458441 37.855 317 176 11 177 486 123 425 5.12e-55 201
Msa0171200 MtrunA17_Chr6g0458421 36.741 313 185 8 177 486 25 327 1.61e-53 195
Msa0171200 MtrunA17_Chr6g0458431 36.593 317 180 10 177 486 90 392 1.38e-51 191
Msa0171200 MtrunA17_Chr5g0411271 31.707 369 215 9 139 486 97 449 1.01e-49 187
Msa0171200 MtrunA17_Chr8g0366721 31.935 310 182 9 182 486 213 498 1.21e-41 160
Msa0171200 MtrunA17_Chr8g0365831 32.288 319 183 12 182 486 165 464 9.34e-36 142
Msa0171200 MtrunA17_Chr3g0123951 30.408 319 184 8 182 470 24 334 9.83e-33 130
Msa0171200 MtrunA17_Chr8g0382161 29.467 319 187 9 182 470 24 334 1.35e-31 127
Msa0171200 MtrunA17_Chr1g0149991 28.161 348 198 11 182 484 182 522 2.37e-30 127
Msa0171200 MtrunA17_Chr4g0062561 30.449 312 185 9 182 486 254 540 4.16e-28 121
Msa0171200 MtrunA17_Chr4g0062561 29.043 303 185 10 199 492 577 858 1.97e-21 100
Msa0171200 MtrunA17_Chr1g0148321 27.647 340 209 11 142 467 67 383 3.28e-24 109
Msa0171200 MtrunA17_Chr2g0322211 37.255 153 90 3 339 488 714 863 3.62e-22 102
Msa0171200 MtrunA17_Chr4g0062491 26.471 306 191 11 221 512 35 320 2.82e-20 92.8
Msa0171200 MtrunA17_Chr3g0138791 27.090 299 186 10 180 467 106 383 4.39e-20 96.3
Msa0171200 MtrunA17_Chr4g0064671 26.016 246 126 7 291 484 2 243 1.60e-19 89.4
Msa0171200 MtrunA17_Chr1g0189101 35.714 168 96 5 339 502 762 921 2.08e-18 90.5
Msa0171200 MtrunA17_Chr7g0267641 27.935 247 152 9 262 494 710 944 1.90e-17 87.4
Msa0171200 MtrunA17_Chr7g0255591 29.245 212 141 6 282 487 693 901 6.27e-16 82.4
Msa0171200 MtrunA17_Chr3g0121291 37.121 132 62 4 373 486 941 1069 2.06e-14 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171200 AT2G24640.1 63.619 514 167 6 6 513 5 504 0.0 676
Msa0171200 AT4G31670.1 63.860 487 164 3 6 492 5 479 0.0 652
Msa0171200 AT2G24640.2 74.251 334 84 1 180 513 3 334 0.0 544
Msa0171200 AT1G17110.3 50.521 384 185 1 160 543 417 795 4.42e-128 406
Msa0171200 AT1G17110.1 50.521 384 185 1 160 543 417 795 4.42e-128 406
Msa0171200 AT1G17110.2 50.521 384 185 1 160 543 421 799 4.51e-128 407
Msa0171200 AT4G24560.1 50.575 348 170 2 161 508 523 868 4.61e-115 374
Msa0171200 AT5G65450.1 52.870 331 151 3 162 491 311 637 1.13e-108 350
Msa0171200 AT5G65450.2 52.870 331 151 3 162 491 330 656 3.47e-108 349
Msa0171200 AT5G57990.1 38.636 308 182 5 181 486 107 409 9.32e-63 227
Msa0171200 AT3G14400.1 37.791 344 191 8 170 499 13 347 1.52e-60 218
Msa0171200 AT5G46740.1 34.251 327 197 9 171 486 149 468 2.08e-44 172
Msa0171200 AT4G17895.1 32.911 316 192 10 182 490 177 479 2.23e-38 153
Msa0171200 AT5G46740.2 36.681 229 134 6 262 486 38 259 7.35e-34 137
Msa0171200 AT2G22310.1 29.430 316 190 8 182 470 24 333 4.09e-33 132
Msa0171200 AT4G39910.1 28.660 321 191 8 182 470 24 338 1.29e-31 127
Msa0171200 AT2G22310.3 28.383 303 184 8 195 470 5 301 1.93e-28 117
Msa0171200 AT2G22310.2 28.094 299 182 8 199 470 4 296 5.16e-27 113
Msa0171200 AT5G10790.2 27.596 366 197 12 182 489 49 404 1.14e-23 105
Msa0171200 AT5G10790.1 27.596 366 197 12 182 489 178 533 5.54e-23 104
Msa0171200 AT3G49600.2 26.000 300 187 10 180 467 105 381 3.47e-20 97.1
Msa0171200 AT3G49600.1 26.000 300 187 10 180 467 105 381 3.47e-20 97.1
Msa0171200 AT3G49600.3 26.000 300 187 10 180 467 105 381 3.67e-20 96.7
Msa0171200 AT5G22030.1 37.013 154 90 4 339 488 720 870 4.68e-20 96.3
Msa0171200 AT5G22030.2 37.013 154 90 4 339 488 762 912 5.16e-20 96.3
Msa0171200 AT4G10590.4 35.673 171 100 5 339 505 745 909 9.07e-19 92.0
Msa0171200 AT4G10590.3 35.673 171 100 5 339 505 745 909 9.07e-19 92.0
Msa0171200 AT4G10590.1 35.673 171 100 5 339 505 745 909 9.07e-19 92.0
Msa0171200 AT4G10590.2 35.673 171 100 5 339 505 745 909 9.07e-19 92.0
Msa0171200 AT4G10570.1 35.088 171 101 5 339 505 746 910 7.63e-18 89.4
Msa0171200 AT1G32850.1 34.194 155 95 4 339 489 731 882 1.79e-16 84.7
Msa0171200 AT1G04860.1 36.719 128 64 4 373 486 832 956 3.14e-15 80.9
Msa0171200 AT2G40930.1 32.704 159 99 5 333 486 760 915 4.78e-14 77.0
Msa0171200 AT2G40930.2 32.704 159 99 5 333 486 760 915 4.78e-14 77.0
Msa0171200 AT3G11910.3 24.611 321 192 14 177 477 196 486 1.04e-13 75.9
Msa0171200 AT3G11910.1 24.611 321 192 14 177 477 196 486 1.04e-13 75.9
Msa0171200 AT3G11910.4 24.611 321 192 14 177 477 195 485 1.08e-13 75.9
Msa0171200 AT3G11910.2 24.611 321 192 14 177 477 195 485 1.08e-13 75.9
Msa0171200 AT5G06600.3 25.077 323 188 15 177 477 197 487 1.12e-13 75.9
Msa0171200 AT5G06600.2 25.077 323 188 15 177 477 196 486 1.31e-13 75.5
Msa0171200 AT5G06600.1 25.077 323 188 15 177 477 197 487 1.32e-13 75.5
Msa0171200 AT2G32780.1 37.121 132 62 5 373 486 954 1082 2.27e-13 74.7

Find 214 sgRNAs with CRISPR-Local

Find 435 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAAATTGTGTTCTAAATT+TGG 0.084163 1_4:-55842075 None:intergenic
AAGGCAATTGTAAGAATATT+TGG 0.129076 1_4:-55838572 None:intergenic
GGCAACTAATGGTGTGTTTA+AGG 0.166498 1_4:+55836370 Msa0171200:CDS
CCTAATATCGGTGGTACTTT+AGG 0.209819 1_4:+55837513 Msa0171200:CDS
CTACGTTGAATTGTGATTCT+AGG 0.218939 1_4:-55835436 None:intergenic
AATTTGTTAAACTATTTAAC+TGG 0.221244 1_4:+55837065 Msa0171200:CDS
GTGTTTAAGGCTTCTGCTGC+TGG 0.231659 1_4:+55836383 Msa0171200:CDS
TAAAAGAAAATTACATCTTT+AGG 0.232918 1_4:-55836473 None:intergenic
TCTGCTACATCAAGGATTTC+AGG 0.234092 1_4:+55839041 Msa0171200:CDS
AATCTGCTATTCCGTGAATT+TGG 0.239552 1_4:-55841903 None:intergenic
TGTGATTGTGATTGTGATTT+GGG 0.246282 1_4:+55835366 Msa0171200:five_prime_UTR
CATATATGCTATTGTATAAA+AGG 0.253275 1_4:+55839242 Msa0171200:CDS
AGATTTGATTGATGTGGATA+TGG 0.257969 1_4:+55840284 Msa0171200:CDS
ACCGCTCTTGTAATCGCTAT+TGG 0.263025 1_4:+55835516 Msa0171200:CDS
TTTCTTCTGTTCTATAAATC+AGG 0.263651 1_4:-55835290 None:intergenic
CAACAGTCGCATTGGAATTC+CGG 0.278181 1_4:+55836287 Msa0171200:CDS
TCTGTTTGCCTTGATGAATT+TGG 0.280351 1_4:+55837723 Msa0171200:CDS
CCAGAAGAAACCTTTGATTC+TGG 0.284036 1_4:-55839802 None:intergenic
TAGCTTAACCAGTGCAGATT+TGG 0.296940 1_4:+55841961 Msa0171200:three_prime_UTR
TTGTGATTGTGATTGTGATT+TGG 0.298722 1_4:+55835365 Msa0171200:five_prime_UTR
TCGAAATGTGGAGGAAGATT+TGG 0.318936 1_4:+55840440 Msa0171200:CDS
AATTGCCTTGAAAAGATTCC+AGG 0.322192 1_4:+55838586 Msa0171200:CDS
CCTAAAGTACCACCGATATT+AGG 0.326433 1_4:-55837513 None:intergenic
ATCGGTGGTACTTTAGGTTA+TGG 0.331235 1_4:+55837519 Msa0171200:CDS
GCTAACGACGATGCATATTA+TGG 0.332647 1_4:+55840498 Msa0171200:CDS
GCTAACGACGATGCATATTA+TGG 0.332647 1_4:+55842019 Msa0171200:three_prime_UTR
CAAGAATTGAAGGTTTCTTC+TGG 0.335200 1_4:+55839955 Msa0171200:CDS
ATTCAAACTACCGAATCTTC+AGG 0.340313 1_4:+55839658 Msa0171200:CDS
CCGGATGAAACCTTCAATTC+TGG 0.349146 1_4:-55840105 None:intergenic
ATCTTCAACAACATGAGAAA+TGG 0.349453 1_4:-55840265 None:intergenic
CCTTTCAAATGTGAAGGCCT+TGG 0.352877 1_4:+55839738 Msa0171200:CDS
TTTCAGGCATTTGTAATGAT+TGG 0.354105 1_4:+55837403 Msa0171200:intron
TTAAGAAATTACATTCATTT+CGG 0.357403 1_4:-55837311 None:intergenic
AGCTGTCCCTTCTAACCTTC+AGG 0.361138 1_4:+55837755 Msa0171200:CDS
TTTACAACGGGAGCACTTCT+TGG 0.364394 1_4:-55835691 None:intergenic
TAAGGTTGCTTGTGTGGAAT+TGG 0.364996 1_4:+55839198 Msa0171200:intron
CGTTTAGCTTCGGAATTCAA+TGG 0.369885 1_4:-55840000 None:intergenic
AGTTAAGAACACCGGGCATT+GGG 0.372286 1_4:-55835629 None:intergenic
GCCGCTTGTTGCCTACTTGT+TGG 0.374111 1_4:+55837278 Msa0171200:CDS
GTTGTAAAGGCGTTCGATAT+TGG 0.375635 1_4:+55835706 Msa0171200:CDS
ACTCTCAAATGTGAAGGATT+TGG 0.377040 1_4:+55840041 Msa0171200:CDS
ATTGGAGGAGGTGCTTTCTC+AGG 0.377052 1_4:+55839216 Msa0171200:CDS
GGGCTAAGATTTAAAGTCTC+AGG 0.378765 1_4:-55838920 None:intergenic
AACAGTCGCATTGGAATTCC+GGG 0.387892 1_4:+55836288 Msa0171200:CDS
ACATCTTTAGGCTTCTTGAT+AGG 0.387941 1_4:-55836461 None:intergenic
TGTTTAAGGCTTCTGCTGCT+GGG 0.390727 1_4:+55836384 Msa0171200:CDS
ACACCATTAGTTGCCCCATT+TGG 0.392340 1_4:-55836362 None:intergenic
AAGCATTTAACATATCAATA+TGG 0.393717 1_4:-55839000 None:intergenic
CTATCTCGTTTGCCTAATAT+CGG 0.393985 1_4:+55837501 Msa0171200:CDS
GCTGGGTCTTGTCCTTCTCC+AGG 0.397149 1_4:+55840363 Msa0171200:CDS
CCAGAATCAAAGGTTTCTTC+TGG 0.404756 1_4:+55839802 Msa0171200:CDS
ACAGAAAAGGACAGAGGAAA+TGG 0.411132 1_4:+55840603 Msa0171200:CDS
TCAAGGATTTCAGGGGAAAC+TGG 0.412917 1_4:+55839050 Msa0171200:CDS
ACTGTTAAAGAGTGGCTTGA+TGG 0.417050 1_4:+55838261 Msa0171200:CDS
AGCTTCTGAGTTCAATTCAA+TGG 0.418219 1_4:-55839842 None:intergenic
CAGCCTGAAGTCTCTTCTAT+AGG 0.419780 1_4:-55840312 None:intergenic
ATTGGGGAGGTGGGAGAAGA+AGG 0.422557 1_4:-55835612 None:intergenic
GCTGCTGTTTGGCAGGTGTC+AGG 0.425121 1_4:+55838508 Msa0171200:intron
ATATCGAACGCCTTTACAAC+GGG 0.425342 1_4:-55835703 None:intergenic
GTATTTAACTCGGCTCCAAA+TGG 0.425765 1_4:+55836347 Msa0171200:CDS
ATTTCAGGGGAAACTGGTAT+AGG 0.426965 1_4:+55839056 Msa0171200:CDS
TACATGCAGAGTGGGAGGTT+TGG 0.427282 1_4:+55838872 Msa0171200:intron
ATTCGGTAGTTTGAATTTGA+AGG 0.428268 1_4:-55839651 None:intergenic
CGAACAGTGGAAGTGGAACC+TGG 0.429811 1_4:+55839694 Msa0171200:CDS
CTAGTGGTTACGGTACTTCC+AGG 0.430005 1_4:+55836438 Msa0171200:CDS
AGTTTAACAAATTCATCATA+AGG 0.431172 1_4:-55837055 None:intergenic
AACACCGGGCATTGGGGAGG+TGG 0.435518 1_4:-55835622 None:intergenic
TCTCCAGCTTCACTCATGTA+AGG 0.436136 1_4:-55838941 None:intergenic
GCTCCAAATGGGGCAACTAA+TGG 0.437343 1_4:+55836359 Msa0171200:CDS
AGGTGTACTGCCCGACCATC+AGG 0.437934 1_4:+55839628 Msa0171200:intron
TATTTAACTCGGCTCCAAAT+GGG 0.439240 1_4:+55836348 Msa0171200:CDS
CATTTCTAAGGTTGCTTGTG+TGG 0.445065 1_4:+55839192 Msa0171200:intron
GACTCTTGAATTGTGGAAAC+AGG 0.446722 1_4:+55837113 Msa0171200:CDS
CTTCATGTGGAGTAGCAGAT+TGG 0.451994 1_4:-55840542 None:intergenic
TACGTTGAATTGTGATTCTA+GGG 0.454479 1_4:-55835435 None:intergenic
CTGTTAAAGAGTGGCTTGAT+GGG 0.454725 1_4:+55838262 Msa0171200:CDS
AATTTGAAGGCCTGATGGTC+GGG 0.458437 1_4:-55839638 None:intergenic
TCTCCCACCTCCCCAATGCC+CGG 0.458535 1_4:+55835618 Msa0171200:CDS
TGTTGCCTACTTGTTGGAGA+AGG 0.460863 1_4:+55837284 Msa0171200:CDS
GTTGTCTCCTGAAGGTTAGA+AGG 0.461570 1_4:-55837762 None:intergenic
TGATATTAGTCCAGAATTGA+AGG 0.462584 1_4:+55840095 Msa0171200:CDS
TCTTCAACAACATGAGAAAT+GGG 0.467804 1_4:-55840264 None:intergenic
GACTTGACAGTTGAAATTCA+TGG 0.470241 1_4:+55838201 Msa0171200:CDS
CAAGATGATACTGGTGTGGC+TGG 0.472932 1_4:+55840345 Msa0171200:CDS
CTGCTACATCAAGGATTTCA+GGG 0.473698 1_4:+55839042 Msa0171200:CDS
TAATATTAGTCAAGAATTGA+AGG 0.477301 1_4:+55839945 Msa0171200:CDS
GATGTCTAACCTCAGATTGA+AGG 0.479128 1_4:-55837812 None:intergenic
TCAACGTAGATGCTTGTAAT+CGG 0.479652 1_4:+55835450 Msa0171200:exon
AAATTCACGGAATAGCAGAT+TGG 0.485471 1_4:+55841905 Msa0171200:three_prime_UTR
GAGCGGTGAATATGAATTGA+AGG 0.486940 1_4:-55835500 None:intergenic
AGACCTATAGAAGAGACTTC+AGG 0.487841 1_4:+55840309 Msa0171200:CDS
CAGAATGTCAACAGTCGCAT+TGG 0.488151 1_4:+55836279 Msa0171200:CDS
ACTATTTAACTGGGACAAGC+CGG 0.489316 1_4:+55837075 Msa0171200:CDS
GAGTTAAGAACACCGGGCAT+TGG 0.490369 1_4:-55835630 None:intergenic
AGACTGCTCTCGTTTAGCTT+CGG 0.490718 1_4:-55840010 None:intergenic
TTCAAACTACCGAATCTTCA+GGG 0.492835 1_4:+55839659 Msa0171200:CDS
AGCTTCGGAATTCAATGGAA+TGG 0.494486 1_4:-55839995 None:intergenic
GTTGCCTACTTGTTGGAGAA+GGG 0.495969 1_4:+55837285 Msa0171200:CDS
TGGAGATGCTGCCTCGTTGG+AGG 0.497630 1_4:+55838221 Msa0171200:CDS
TTTAGGCTTCTTGATAGGCC+TGG 0.501943 1_4:-55836456 None:intergenic
GAAGCGCAAACAGCACAAAC+AGG 0.506304 1_4:-55835660 None:intergenic
AGCCCTTACATGAGTGAAGC+TGG 0.509985 1_4:+55838938 Msa0171200:CDS
GCGCAAGATCAAGATGATAC+TGG 0.513020 1_4:+55840336 Msa0171200:CDS
GGTTGCTTGTGTGGAATTGG+AGG 0.513299 1_4:+55839201 Msa0171200:intron
TCTAAATTTGGCTTGCACAT+TGG 0.514422 1_4:-55842063 None:intergenic
AGGAAATGGAATTAAGAAAG+TGG 0.515604 1_4:+55840617 Msa0171200:CDS
GTTTAAGGCTTCTGCTGCTG+GGG 0.516084 1_4:+55836385 Msa0171200:CDS
CCAGAATTGAAGGTTTCATC+CGG 0.517764 1_4:+55840105 Msa0171200:CDS
AGAAATTACATTCATTTCGG+TGG 0.518618 1_4:-55837308 None:intergenic
AAACGAGATAGAATATTCAT+TGG 0.521393 1_4:-55837489 None:intergenic
CCTTGTGGACTCTTGAATTG+TGG 0.523172 1_4:+55837106 Msa0171200:CDS
TCATGGAGATGCTGCCTCGT+TGG 0.523431 1_4:+55838218 Msa0171200:CDS
GATTTGATTGATGTGGATAT+GGG 0.526237 1_4:+55840285 Msa0171200:CDS
AAAAGAGCGAACAGTGGAAG+TGG 0.526891 1_4:+55839687 Msa0171200:CDS
AAGAAGTGCTCCCGTTGTAA+AGG 0.526930 1_4:+55835693 Msa0171200:CDS
GAAAATATGTATAAATGTGA+GGG 0.527072 1_4:+55838285 Msa0171200:CDS
GGCTAAGATTTAAAGTCTCA+GGG 0.529508 1_4:-55838919 None:intergenic
TGCTTCCTATCCCACAGAAA+AGG 0.530729 1_4:+55840590 Msa0171200:CDS
TGGTGGTCGCCTTCAATCTG+AGG 0.532511 1_4:+55837803 Msa0171200:CDS
CTATTTAACTGGGACAAGCC+GGG 0.536675 1_4:+55837076 Msa0171200:CDS
TGCTTGTGTGGAATTGGAGG+AGG 0.537419 1_4:+55839204 Msa0171200:CDS
ACAACGGGAGCACTTCTTGG+TGG 0.537857 1_4:-55835688 None:intergenic
TTTCTCCACCAAATTCATCA+AGG 0.540291 1_4:-55837731 None:intergenic
AAGGATTTGGCTTGCAGTAG+AGG 0.541242 1_4:+55840054 Msa0171200:CDS
GTTTGCCTTGATGAATTTGG+TGG 0.542148 1_4:+55837726 Msa0171200:CDS
GCACTGGTACCTAGTGGTTA+CGG 0.542766 1_4:+55836428 Msa0171200:CDS
GACGATGCATATTATGGCAA+TGG 0.543723 1_4:+55840504 Msa0171200:CDS
GACGATGCATATTATGGCAA+TGG 0.543723 1_4:+55842025 Msa0171200:three_prime_UTR
TGTATCTTCCAAATCTGCAC+TGG 0.545729 1_4:-55841969 None:intergenic
TCATTACATCTGCTACATCA+AGG 0.545852 1_4:+55839033 Msa0171200:CDS
AAATCAGTATGAAAGTATGA+TGG 0.546011 1_4:+55838179 Msa0171200:CDS
GAATTTGAAGGCCTGATGGT+CGG 0.546387 1_4:-55839639 None:intergenic
ACACCGGGCATTGGGGAGGT+GGG 0.548171 1_4:-55835621 None:intergenic
AGCGGATAAGTTAATAATGT+AGG 0.548228 1_4:+55840647 Msa0171200:CDS
AAAGTCATGTTGAAAGAGCA+AGG 0.548323 1_4:+55837445 Msa0171200:CDS
AAGAGCAAGGCTAAGTTCAC+AGG 0.548821 1_4:+55837458 Msa0171200:CDS
AGTCCACAAGGAGGAAATCC+CGG 0.549196 1_4:-55837094 None:intergenic
TGATATTAGTCCAGAATCAA+AGG 0.549744 1_4:+55839792 Msa0171200:CDS
AGGATCGAATTTGATTGCAC+TGG 0.551144 1_4:+55836412 Msa0171200:CDS
TGTTGAAGATTTGATTGATG+TGG 0.552841 1_4:+55840278 Msa0171200:CDS
CGGTGCCAATGTATTTAACT+CGG 0.553052 1_4:+55836337 Msa0171200:CDS
TACATGAGTGAAGCTGGAGA+TGG 0.554559 1_4:+55838944 Msa0171200:CDS
GATTCTGGACTAATATCAGA+TGG 0.557858 1_4:-55839787 None:intergenic
ATTTGTTAAACTATTTAACT+GGG 0.558747 1_4:+55837066 Msa0171200:CDS
CCAAGGCCTTCACATTTGAA+AGG 0.559724 1_4:-55839738 None:intergenic
TGGAGCCGAGTTAAATACAT+TGG 0.560300 1_4:-55836342 None:intergenic
ATCAGTTTACTGTTAAAGAG+TGG 0.561460 1_4:+55838253 Msa0171200:CDS
TTGGAGGAGGTGCTTTCTCA+GGG 0.561855 1_4:+55839217 Msa0171200:CDS
TTCAATAGATTATCGAAATG+TGG 0.567333 1_4:+55840428 Msa0171200:CDS
GTCAGGACTATGTAAAGGCA+TGG 0.569704 1_4:+55838525 Msa0171200:CDS
AAGCCGGGATTTCCTCCTTG+TGG 0.571221 1_4:+55837091 Msa0171200:CDS
GTTTGAATTTGAAGGCCTGA+TGG 0.572545 1_4:-55839643 None:intergenic
GGAAAATATGTATAAATGTG+AGG 0.576041 1_4:+55838284 Msa0171200:CDS
AACAGCACAAACAGGCTCAT+CGG 0.576494 1_4:-55835652 None:intergenic
CTCCAGCTTCACTCATGTAA+GGG 0.583020 1_4:-55838940 None:intergenic
AGAAGACTCGTAATCATAGC+CGG 0.583786 1_4:-55840124 None:intergenic
GGCTTGCAGTAGAGATTGTG+AGG 0.586486 1_4:+55839909 Msa0171200:CDS
GGCTTGCAGTAGAGGTTGTG+AGG 0.586486 1_4:+55840062 Msa0171200:CDS
TGAATGCCTTTCAAATGTGA+AGG 0.588206 1_4:+55839732 Msa0171200:CDS
TCTTGACTAATATTATCAGA+TGG 0.589574 1_4:-55839937 None:intergenic
CAGGTGTCAGGACTATGTAA+AGG 0.591503 1_4:+55838520 Msa0171200:intron
CTGGAAGTACCGTAACCACT+AGG 0.593348 1_4:-55836437 None:intergenic
AAGAACACCGGGCATTGGGG+AGG 0.596034 1_4:-55835625 None:intergenic
TTGTAATCGGTGGTGTATCG+TGG 0.596551 1_4:+55835463 Msa0171200:CDS
AATTCTGGACTAATATCAGA+TGG 0.597678 1_4:-55840090 None:intergenic
CTCATCGGAGTTAAGAACAC+CGG 0.597915 1_4:-55835637 None:intergenic
CCACAATTCAAGAGTCCACA+AGG 0.598367 1_4:-55837106 None:intergenic
AATATCGAACGCCTTTACAA+CGG 0.598805 1_4:-55835704 None:intergenic
GTATAGGATTGATGACTCAA+AGG 0.599011 1_4:+55839072 Msa0171200:CDS
GGATTGCAATAGAGATTGTG+AGG 0.599183 1_4:+55839759 Msa0171200:CDS
GCTACTCCACATGAAGATGC+TGG 0.600337 1_4:+55840549 Msa0171200:CDS
TTTAAGGCTTCTGCTGCTGG+GGG 0.600788 1_4:+55836386 Msa0171200:CDS
TGTTGTACATGCAGAGTGGG+AGG 0.601756 1_4:+55838867 Msa0171200:intron
TTGTCTCCTGAAGGTTAGAA+GGG 0.606448 1_4:-55837761 None:intergenic
GAAGTCGACGCTAATTTCGA+AGG 0.607230 1_4:+55835579 Msa0171200:CDS
ACAATCTCTATTGCAATCCA+AGG 0.607278 1_4:-55839755 None:intergenic
ACTCTCAAATGTGAAGGTGT+TGG 0.608500 1_4:+55839888 Msa0171200:CDS
TCATTTGGTAAACCTGGAGA+AGG 0.610432 1_4:-55840375 None:intergenic
TCATCGGAGTTAAGAACACC+GGG 0.610855 1_4:-55835636 None:intergenic
GGATAATGGTTGTCTCCTGA+AGG 0.611966 1_4:-55837770 None:intergenic
AAGATGATACTGGTGTGGCT+GGG 0.612233 1_4:+55840346 Msa0171200:CDS
AGGATGCTCACGAGTTCATG+AGG 0.612750 1_4:+55837550 Msa0171200:CDS
TGTTAAAGAGTGGCTTGATG+GGG 0.613216 1_4:+55838263 Msa0171200:CDS
GACTTCGAAGTATTTAGAAG+CGG 0.613603 1_4:-55835562 None:intergenic
GTGGCCCTTCTCCAACAAGT+AGG 0.614253 1_4:-55837289 None:intergenic
GTTAAGAACACCGGGCATTG+GGG 0.614434 1_4:-55835628 None:intergenic
AGCTAAAAGAGAGCAGTCTG+AGG 0.617289 1_4:+55839861 Msa0171200:CDS
TGTAATCGGTGGTGTATCGT+GGG 0.618092 1_4:+55835464 Msa0171200:CDS
TCCAACAAGTAGGCAACAAG+CGG 0.618914 1_4:-55837279 None:intergenic
AATAGATTATCGAAATGTGG+AGG 0.625891 1_4:+55840431 Msa0171200:CDS
TTTAGGTTATGGAAGACAAG+AGG 0.626868 1_4:+55837530 Msa0171200:CDS
AAGATTTAAAGTCTCAGGGA+AGG 0.629675 1_4:-55838915 None:intergenic
ATTTAACTCGGCTCCAAATG+GGG 0.631267 1_4:+55836349 Msa0171200:CDS
TCCAATAGCGATTACAAGAG+CGG 0.633349 1_4:-55835517 None:intergenic
TCTCGTTTGCCTAATATCGG+TGG 0.635704 1_4:+55837504 Msa0171200:CDS
ACGTAGATGCTTGTAATCGG+TGG 0.640137 1_4:+55835453 Msa0171200:exon
GGACACACTCTCAAATGTGA+AGG 0.640467 1_4:+55840035 Msa0171200:CDS
GTGATTGTGATTGTGATTTG+GGG 0.640769 1_4:+55835367 Msa0171200:five_prime_UTR
TTCGGAATTCAATGGAATGG+AGG 0.641913 1_4:-55839992 None:intergenic
TTGATTGCACTGGTACCTAG+TGG 0.650467 1_4:+55836422 Msa0171200:CDS
TAAGAAAGTGGAAATATCAG+CGG 0.652441 1_4:+55840629 Msa0171200:CDS
GGACACACTCTCAAATGTGA+AGG 0.654382 1_4:+55839882 Msa0171200:CDS
AAAATATGTATAAATGTGAG+GGG 0.663025 1_4:+55838286 Msa0171200:CDS
AGAGTACCAGCATCTTCATG+TGG 0.664519 1_4:-55840555 None:intergenic
TGTGGGATAGGAAGCAACAC+CGG 0.677681 1_4:-55840583 None:intergenic
TGCTACATCAAGGATTTCAG+GGG 0.678694 1_4:+55839043 Msa0171200:CDS
AGCTAAACGAGAGCAGTCTG+CGG 0.683742 1_4:+55840014 Msa0171200:CDS
AGATTTGGAAGATACAGATG+CGG 0.692292 1_4:+55840455 Msa0171200:CDS
AGATCAAGATGATACTGGTG+TGG 0.712390 1_4:+55840341 Msa0171200:CDS
GAATGTAAAAGAGCGAACAG+TGG 0.713953 1_4:+55839681 Msa0171200:CDS
TATCCCACAGAAAAGGACAG+AGG 0.718301 1_4:+55840597 Msa0171200:CDS
AGATTTGGAAGATACATATG+CGG 0.719261 1_4:+55841976 Msa0171200:three_prime_UTR
CAATTCAAGAGTCCACAAGG+AGG 0.738078 1_4:-55837103 None:intergenic
ATCTAGACATTCCTCCAACG+AGG 0.743248 1_4:-55838232 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTAAAATATTTTTTT+AGG + chr1_4:55837679-55837698 Msa0171200:intron 0.0%
!!! AAATCTAAAATTTATATCTT+AGG - chr1_4:55838053-55838072 None:intergenic 10.0%
!!! TTATAATAACTATTTTTGTT+TGG + chr1_4:55838393-55838412 Msa0171200:intron 10.0%
!!! GATTTAATTTATCATTATTG+TGG + chr1_4:55835831-55835850 Msa0171200:intron 15.0%
!! CAATAATAATGATGAATTAA+GGG - chr1_4:55836099-55836118 None:intergenic 15.0%
!! ACAATAATAATGATGAATTA+AGG - chr1_4:55836100-55836119 None:intergenic 15.0%
!! TAAAAGAAAATTACATCTTT+AGG - chr1_4:55836476-55836495 None:intergenic 15.0%
!! TTCGTAAAAAACTAAATTAT+TGG + chr1_4:55836711-55836730 Msa0171200:intron 15.0%
!!! TTTGTCTATATTTTGTTTAT+AGG + chr1_4:55836964-55836983 Msa0171200:intron 15.0%
!!! TTGTCTATATTTTGTTTATA+GGG + chr1_4:55836965-55836984 Msa0171200:intron 15.0%
!!! AATTTGTTAAACTATTTAAC+TGG + chr1_4:55837065-55837084 Msa0171200:CDS 15.0%
!!! ATTTGTTAAACTATTTAACT+GGG + chr1_4:55837066-55837085 Msa0171200:CDS 15.0%
!! TTAAGAAATTACATTCATTT+CGG - chr1_4:55837314-55837333 None:intergenic 15.0%
!!! TTAACTTCTTTTTTTCATAA+TGG + chr1_4:55837335-55837354 Msa0171200:intron 15.0%
!! TTACATCTATAATAAAATAG+AGG + chr1_4:55837891-55837910 Msa0171200:intron 15.0%
!! TTATTATTGTGAAACTAAAT+AGG + chr1_4:55838128-55838147 Msa0171200:intron 15.0%
!! CTATTTAGTTATACAATAAA+CGG + chr1_4:55838323-55838342 Msa0171200:intron 15.0%
!!! TTTTCTCATGTTTTTTTTTT+TGG + chr1_4:55838842-55838861 Msa0171200:intron 15.0%
!!! TTTCTCATGTTTTTTTTTTT+GGG + chr1_4:55838843-55838862 Msa0171200:intron 15.0%
!! AAATAGTAAAAAGTTTCATT+GGG - chr1_4:55839107-55839126 None:intergenic 15.0%
!! AAAATAGTAAAAAGTTTCAT+TGG - chr1_4:55839108-55839127 None:intergenic 15.0%
!!! CTTTTTACTATTTTTCTTTT+TGG + chr1_4:55839114-55839133 Msa0171200:intron 15.0%
!!! AAATCAAAAAAGTGTCATTA+TGG - chr1_4:55835816-55835835 None:intergenic 20.0%
!!! ATGATTATGATTAGTTGTTT+TGG + chr1_4:55835859-55835878 Msa0171200:intron 20.0%
!!! GTTGTTTTGTTTTGTTTATT+TGG + chr1_4:55835956-55835975 Msa0171200:intron 20.0%
!!! ACTAGTTGTTTTGATTTTTT+TGG + chr1_4:55836138-55836157 Msa0171200:intron 20.0%
!! GTTATGTGTTTGTAATAATT+AGG + chr1_4:55836160-55836179 Msa0171200:intron 20.0%
!! GTTTGTAATAATTAGGAATT+AGG + chr1_4:55836167-55836186 Msa0171200:intron 20.0%
!!! TTTAAGATCTGAATTTAGTT+TGG + chr1_4:55836225-55836244 Msa0171200:intron 20.0%
!! AAAAAATGCAAAAGTAATAG+CGG + chr1_4:55836317-55836336 Msa0171200:CDS 20.0%
!!! AAGCACAATATTTGTAATTT+TGG - chr1_4:55837021-55837040 None:intergenic 20.0%
!! AGTTTAACAAATTCATCATA+AGG - chr1_4:55837058-55837077 None:intergenic 20.0%
!! AGATAATCCAAAACTAAATA+TGG - chr1_4:55837651-55837670 None:intergenic 20.0%
!!! TAAAATTAACAGTTTGTTGT+TGG + chr1_4:55837844-55837863 Msa0171200:intron 20.0%
!! TATAATAAAATAGAGGCTAA+AGG + chr1_4:55837898-55837917 Msa0171200:intron 20.0%
!! TAACTTCTTAAGTTAAATGT+GGG - chr1_4:55837973-55837992 None:intergenic 20.0%
!! ATTGCATAGAAATCAAATAT+TGG - chr1_4:55838010-55838029 None:intergenic 20.0%
!! GAAAATATGTATAAATGTGA+GGG + chr1_4:55838285-55838304 Msa0171200:CDS 20.0%
!! AAAATATGTATAAATGTGAG+GGG + chr1_4:55838286-55838305 Msa0171200:CDS 20.0%
!! CGTTTATTGTATAACTAAAT+AGG - chr1_4:55838325-55838344 None:intergenic 20.0%
!! TGTTTATTAATTGAATGTAG+AGG + chr1_4:55838348-55838367 Msa0171200:intron 20.0%
!! AAGCATTTAACATATCAATA+TGG - chr1_4:55839003-55839022 None:intergenic 20.0%
!!! ATGTTAAATGCTTCATTTTT+TGG + chr1_4:55839010-55839029 Msa0171200:CDS 20.0%
!! CATATATGCTATTGTATAAA+AGG + chr1_4:55839242-55839261 Msa0171200:CDS 20.0%
!! TTTCTAAGTGCTAAAATTTA+AGG - chr1_4:55839424-55839443 None:intergenic 20.0%
!! TAATATTAGTCAAGAATTGA+AGG + chr1_4:55839945-55839964 Msa0171200:CDS 20.0%
!!! ATTATTAAGAAAGTTGTTTC+TGG + chr1_4:55840958-55840977 Msa0171200:intron 20.0%
!!! GTAATCTTAAATGTGTTATT+AGG + chr1_4:55841341-55841360 Msa0171200:intron 20.0%
!!! AATTTTCTCATAAATCTCTT+GGG + chr1_4:55841366-55841385 Msa0171200:intron 20.0%
!!! TGAAAAGTGATTTTTTTTTG+TGG + chr1_4:55841389-55841408 Msa0171200:intron 20.0%
!!! CTTTTTTATTGTGTTTCTTT+TGG + chr1_4:55841501-55841520 Msa0171200:intron 20.0%
!! TTTTCATTGATCGTGAATTA+GGG - chr1_4:55835414-55835433 None:intergenic 25.0%
!! TTTTTCATTGATCGTGAATT+AGG - chr1_4:55835415-55835434 None:intergenic 25.0%
!! CAACGATTTTTAAATATAGC+AGG - chr1_4:55835785-55835804 None:intergenic 25.0%
! GGTTAATTGATTATTGTGAT+TGG + chr1_4:55835880-55835899 Msa0171200:intron 25.0%
! TGTTTAAGAGAAAGCAAAAA+AGG + chr1_4:55836027-55836046 Msa0171200:intron 25.0%
!!! TTTTTGTTGTGTTAGAATAC+TGG + chr1_4:55836065-55836084 Msa0171200:intron 25.0%
! TTATAGGGTTAAATCTTGTA+TGG + chr1_4:55836980-55836999 Msa0171200:intron 25.0%
!! TTACAAATATTGTGCTTTTC+AGG + chr1_4:55837024-55837043 Msa0171200:intron 25.0%
! TCATTATTAACTGAGATATG+AGG + chr1_4:55837178-55837197 Msa0171200:intron 25.0%
! CATTATTAACTGAGATATGA+GGG + chr1_4:55837179-55837198 Msa0171200:intron 25.0%
! AAACGAGATAGAATATTCAT+TGG - chr1_4:55837492-55837511 None:intergenic 25.0%
!! TACCATTTCAATTTTTGTAG+TGG + chr1_4:55837591-55837610 Msa0171200:intron 25.0%
! ATCCACTACAAAAATTGAAA+TGG - chr1_4:55837596-55837615 None:intergenic 25.0%
! TCCAAAACTAAATATGGAAT+AGG - chr1_4:55837645-55837664 None:intergenic 25.0%
! CTAACTTCTTAAGTTAAATG+TGG - chr1_4:55837974-55837993 None:intergenic 25.0%
! GAAATCAAATATTGGCAATT+GGG - chr1_4:55838002-55838021 None:intergenic 25.0%
! AGAAATCAAATATTGGCAAT+TGG - chr1_4:55838003-55838022 None:intergenic 25.0%
! TGATTTCTATGCAATCTTTA+TGG + chr1_4:55838015-55838034 Msa0171200:intron 25.0%
!! AAATCAGTATGAAAGTATGA+TGG + chr1_4:55838179-55838198 Msa0171200:CDS 25.0%
! GGAAAATATGTATAAATGTG+AGG + chr1_4:55838284-55838303 Msa0171200:CDS 25.0%
! AAGGCAATTGTAAGAATATT+TGG - chr1_4:55838575-55838594 None:intergenic 25.0%
! ACATAGAAACTTGAAACTTA+AGG + chr1_4:55838795-55838814 Msa0171200:intron 25.0%
! AAAAACTGAATATATCACGT+TGG - chr1_4:55839314-55839333 None:intergenic 25.0%
! TAAGTTATTCAAATAACCAG+AGG - chr1_4:55839468-55839487 None:intergenic 25.0%
! TGAATAACTTACAGTTTATC+TGG + chr1_4:55839477-55839496 Msa0171200:intron 25.0%
! TCTTGACTAATATTATCAGA+TGG - chr1_4:55839940-55839959 None:intergenic 25.0%
!! ACCAAATGATTTTTCTTTCT+TGG + chr1_4:55840389-55840408 Msa0171200:CDS 25.0%
! TCCAAGAAAGAAAAATCATT+TGG - chr1_4:55840393-55840412 None:intergenic 25.0%
! TTCAATAGATTATCGAAATG+TGG + chr1_4:55840428-55840447 Msa0171200:CDS 25.0%
! TATCATTTATATCCCATCAT+CGG + chr1_4:55840697-55840716 Msa0171200:intron 25.0%
!!! AGTTGGGAAATTTTTTTTCT+GGG + chr1_4:55840732-55840751 Msa0171200:intron 25.0%
! AAAAGTTAAAATGAGATCCA+AGG - chr1_4:55840777-55840796 None:intergenic 25.0%
!!! CTCATTTTAACTTTTCTAGA+TGG + chr1_4:55840782-55840801 Msa0171200:intron 25.0%
! TTCTTTATGTACAGAATGAA+GGG - chr1_4:55840862-55840881 None:intergenic 25.0%
! TTTCTTTATGTACAGAATGA+AGG - chr1_4:55840863-55840882 None:intergenic 25.0%
! ATTTGTACAATCATAGTATC+AGG - chr1_4:55840999-55841018 None:intergenic 25.0%
! AAATACATGGCAAAAAAATG+TGG - chr1_4:55841070-55841089 None:intergenic 25.0%
! ATTCATAAGCAATGAATGTT+TGG + chr1_4:55841230-55841249 Msa0171200:intron 25.0%
!! GAATTTTCTCATAAATCTCT+TGG + chr1_4:55841365-55841384 Msa0171200:intron 25.0%
! TTTGTGGTCAAATAATCTAA+TGG + chr1_4:55841405-55841424 Msa0171200:intron 25.0%
! AATACAAATATGTGAACTCA+TGG + chr1_4:55841797-55841816 Msa0171200:intron 25.0%
TTGTGATTGTGATTGTGATT+TGG + chr1_4:55835359-55835378 Msa0171200:five_prime_UTR 30.0%
TGTGATTGTGATTGTGATTT+GGG + chr1_4:55835366-55835385 Msa0171200:five_prime_UTR 30.0%
TACGTTGAATTGTGATTCTA+GGG - chr1_4:55835438-55835457 None:intergenic 30.0%
! TGGTTAACTGATTGTTGATT+AGG + chr1_4:55835976-55835995 Msa0171200:intron 30.0%
! CTGATTGTTGATTAGGAATT+AGG + chr1_4:55835983-55836002 Msa0171200:intron 30.0%
!!! TTTGCATTTTTTCTTATGCC+CGG - chr1_4:55836309-55836328 None:intergenic 30.0%
AAATATAGACAAAGTCACCA+AGG - chr1_4:55836957-55836976 None:intergenic 30.0%
AGAAATTACATTCATTTCGG+TGG - chr1_4:55837311-55837330 None:intergenic 30.0%
TTTCAGGCATTTGTAATGAT+TGG + chr1_4:55837403-55837422 Msa0171200:intron 30.0%
!! GCCTATTCCATATTTAGTTT+TGG + chr1_4:55837641-55837660 Msa0171200:intron 30.0%
! ACCATTATCCAACACATTTT+TGG + chr1_4:55837783-55837802 Msa0171200:CDS 30.0%
ACCAAAAATGTGTTGGATAA+TGG - chr1_4:55837787-55837806 None:intergenic 30.0%
!! ATTATCCAACACATTTTTGG+TGG + chr1_4:55837786-55837805 Msa0171200:CDS 30.0%
!! ATTAACAGTTTGTTGTTGGA+AGG + chr1_4:55837848-55837867 Msa0171200:intron 30.0%
TTCTTAAGTTAAATGTGGGA+AGG - chr1_4:55837969-55837988 None:intergenic 30.0%
AAGATTAAGACAGAAGCAAA+TGG - chr1_4:55838102-55838121 None:intergenic 30.0%
ATCAGTTTACTGTTAAAGAG+TGG + chr1_4:55838253-55838272 Msa0171200:CDS 30.0%
!! TTTTTGTTTGGAACTTTGAG+TGG + chr1_4:55838405-55838424 Msa0171200:intron 30.0%
CAGCATAACATGTTAAAAGA+CGG - chr1_4:55838492-55838511 None:intergenic 30.0%
! TTTTAGTATCCTCATTTGTG+TGG + chr1_4:55839164-55839183 Msa0171200:intron 30.0%
TCTGGTGTTTGTTTAAAGAA+TGG + chr1_4:55839495-55839514 Msa0171200:intron 30.0%
ATGGTTACGATATTTGATGT+TGG + chr1_4:55839514-55839533 Msa0171200:intron 30.0%
TGGTTACGATATTTGATGTT+GGG + chr1_4:55839515-55839534 Msa0171200:intron 30.0%
!!! TGTAATTCTTGTTTTGATCC+TGG + chr1_4:55839603-55839622 Msa0171200:intron 30.0%
ATTCGGTAGTTTGAATTTGA+AGG - chr1_4:55839654-55839673 None:intergenic 30.0%
! TTTTACATTCCCTGAAGATT+CGG - chr1_4:55839671-55839690 None:intergenic 30.0%
TGATATTAGTCCAGAATCAA+AGG + chr1_4:55839792-55839811 Msa0171200:CDS 30.0%
AATTCTGGACTAATATCAGA+TGG - chr1_4:55840093-55840112 None:intergenic 30.0%
TGATATTAGTCCAGAATTGA+AGG + chr1_4:55840095-55840114 Msa0171200:CDS 30.0%
TCTTCAACAACATGAGAAAT+GGG - chr1_4:55840267-55840286 None:intergenic 30.0%
ATCTTCAACAACATGAGAAA+TGG - chr1_4:55840268-55840287 None:intergenic 30.0%
TGTTGAAGATTTGATTGATG+TGG + chr1_4:55840278-55840297 Msa0171200:CDS 30.0%
AGATTTGATTGATGTGGATA+TGG + chr1_4:55840284-55840303 Msa0171200:CDS 30.0%
GATTTGATTGATGTGGATAT+GGG + chr1_4:55840285-55840304 Msa0171200:CDS 30.0%
GAAAAATCATTTGGTAAACC+TGG - chr1_4:55840384-55840403 None:intergenic 30.0%
AATAGATTATCGAAATGTGG+AGG + chr1_4:55840431-55840450 Msa0171200:CDS 30.0%
AGGAAATGGAATTAAGAAAG+TGG + chr1_4:55840617-55840636 Msa0171200:CDS 30.0%
TAAGAAAGTGGAAATATCAG+CGG + chr1_4:55840629-55840648 Msa0171200:CDS 30.0%
AGCGGATAAGTTAATAATGT+AGG + chr1_4:55840647-55840666 Msa0171200:CDS 30.0%
!!! GAGTTGGGAAATTTTTTTTC+TGG + chr1_4:55840731-55840750 Msa0171200:intron 30.0%
!!! GTTGGGAAATTTTTTTTCTG+GGG + chr1_4:55840733-55840752 Msa0171200:intron 30.0%
AATGATAGAGCATAATTCCT+TGG + chr1_4:55840827-55840846 Msa0171200:intron 30.0%
!! GTTTCTGGTACAAAATACTT+TGG + chr1_4:55840973-55840992 Msa0171200:intron 30.0%
TTCACAATTTGAAGAACAGT+GGG + chr1_4:55841030-55841049 Msa0171200:intron 30.0%
! TTTTGCCATGTATTTATAGC+AGG + chr1_4:55841075-55841094 Msa0171200:intron 30.0%
TGGCTAGAAATTCACATTTA+AGG + chr1_4:55841425-55841444 Msa0171200:intron 30.0%
! CACATTTAAGGTGATTAAGT+CGG + chr1_4:55841437-55841456 Msa0171200:intron 30.0%
CCACATATAATTCTTAAACG+TGG - chr1_4:55841535-55841554 None:intergenic 30.0%
CCACGTTTAAGAATTATATG+TGG + chr1_4:55841532-55841551 Msa0171200:intron 30.0%
GAAGTCATTTCAGTTATATG+TGG + chr1_4:55841708-55841727 Msa0171200:intron 30.0%
! CTACCTATGTGATTTTTCTA+CGG - chr1_4:55841745-55841764 None:intergenic 30.0%
!! CACAATTTTAGCCAAATTCA+CGG + chr1_4:55841892-55841911 Msa0171200:intron 30.0%
AGATTTGGAAGATACATATG+CGG + chr1_4:55841976-55841995 Msa0171200:three_prime_UTR 30.0%
GTGATTGTGATTGTGATTTG+GGG + chr1_4:55835367-55835386 Msa0171200:five_prime_UTR 35.0%
CTACGTTGAATTGTGATTCT+AGG - chr1_4:55835439-55835458 None:intergenic 35.0%
TCAACGTAGATGCTTGTAAT+CGG + chr1_4:55835450-55835469 Msa0171200:exon 35.0%
! GACTTCGAAGTATTTAGAAG+CGG - chr1_4:55835565-55835584 None:intergenic 35.0%
AATATCGAACGCCTTTACAA+CGG - chr1_4:55835707-55835726 None:intergenic 35.0%
TTGTGTTAGAATACTGGTAG+TGG + chr1_4:55836071-55836090 Msa0171200:intron 35.0%
TATTTAACTCGGCTCCAAAT+GGG + chr1_4:55836348-55836367 Msa0171200:CDS 35.0%
ACATCTTTAGGCTTCTTGAT+AGG - chr1_4:55836464-55836483 None:intergenic 35.0%
! TTATTATCCCTTGTTGTCGA+AGG + chr1_4:55836525-55836544 Msa0171200:intron 35.0%
TAAAACATCTTAGCACCTCA+AGG - chr1_4:55836561-55836580 None:intergenic 35.0%
! ACTTTCTAATCATGCTGCTT+GGG - chr1_4:55836787-55836806 None:intergenic 35.0%
AACTTTCTAATCATGCTGCT+TGG - chr1_4:55836788-55836807 None:intergenic 35.0%
! AGTTAGATGACTGAGCTTTT+TGG + chr1_4:55836804-55836823 Msa0171200:intron 35.0%
CTAAAGTTCGATCATGAGAA+GGG - chr1_4:55837143-55837162 None:intergenic 35.0%
!! TTGTAGTTGTTTTGCGAATG+TGG + chr1_4:55837230-55837249 Msa0171200:intron 35.0%
! CTAGTGCTTATGTTTGTTGA+CGG + chr1_4:55837375-55837394 Msa0171200:intron 35.0%
!!! TTTGTTGACGGTGTTTTTTC+AGG + chr1_4:55837387-55837406 Msa0171200:intron 35.0%
AAAGTCATGTTGAAAGAGCA+AGG + chr1_4:55837445-55837464 Msa0171200:CDS 35.0%
CTATCTCGTTTGCCTAATAT+CGG + chr1_4:55837501-55837520 Msa0171200:CDS 35.0%
! TTTAGGTTATGGAAGACAAG+AGG + chr1_4:55837530-55837549 Msa0171200:CDS 35.0%
TGGATTGTACATTAACTGTC+TGG + chr1_4:55837611-55837630 Msa0171200:intron 35.0%
GGATTGTACATTAACTGTCT+GGG + chr1_4:55837612-55837631 Msa0171200:intron 35.0%
TCTGTTTGCCTTGATGAATT+TGG + chr1_4:55837723-55837742 Msa0171200:CDS 35.0%
TTTCTCCACCAAATTCATCA+AGG - chr1_4:55837734-55837753 None:intergenic 35.0%
ATGTTCTCCAGGGTTATTAA+AGG + chr1_4:55837923-55837942 Msa0171200:intron 35.0%
TGTTCTCCAGGGTTATTAAA+GGG + chr1_4:55837924-55837943 Msa0171200:intron 35.0%
ATTAAGACAGAAGCAAATGG+TGG - chr1_4:55838099-55838118 None:intergenic 35.0%
GACTTGACAGTTGAAATTCA+TGG + chr1_4:55838201-55838220 Msa0171200:CDS 35.0%
ATGTATAAATGTGAGGGGTA+AGG + chr1_4:55838291-55838310 Msa0171200:intron 35.0%
TAACATGTTATGCTGCTGTT+TGG + chr1_4:55838497-55838516 Msa0171200:intron 35.0%
AATTGCCTTGAAAAGATTCC+AGG + chr1_4:55838586-55838605 Msa0171200:CDS 35.0%
TAGAACATATTACTCAGACC+TGG - chr1_4:55838607-55838626 None:intergenic 35.0%
!! TGTTTGTTGTCAGATGCTTT+AGG + chr1_4:55838632-55838651 Msa0171200:intron 35.0%
ATATCACATGAAGCACAAAG+GGG - chr1_4:55838700-55838719 None:intergenic 35.0%
CATATCACATGAAGCACAAA+GGG - chr1_4:55838701-55838720 None:intergenic 35.0%
TCATATCACATGAAGCACAA+AGG - chr1_4:55838702-55838721 None:intergenic 35.0%
TCAAGTTTCTATGTGTTAGC+AGG - chr1_4:55838789-55838808 None:intergenic 35.0%
! AAGATTTAAAGTCTCAGGGA+AGG - chr1_4:55838918-55838937 None:intergenic 35.0%
! GGCTAAGATTTAAAGTCTCA+GGG - chr1_4:55838922-55838941 None:intergenic 35.0%
TCATTACATCTGCTACATCA+AGG + chr1_4:55839033-55839052 Msa0171200:CDS 35.0%
! GTATAGGATTGATGACTCAA+AGG + chr1_4:55839072-55839091 Msa0171200:CDS 35.0%
AATGTAATGCCACACAAATG+AGG - chr1_4:55839176-55839195 None:intergenic 35.0%
TGTGTGGCATTACATTTCTA+AGG + chr1_4:55839180-55839199 Msa0171200:intron 35.0%
!! CCAAAGAAAATTTTGAGGGA+AGG - chr1_4:55839271-55839290 None:intergenic 35.0%
! CCTTCCCTCAAAATTTTCTT+TGG + chr1_4:55839268-55839287 Msa0171200:intron 35.0%
TGAATATATCACGTTGGCAA+GGG - chr1_4:55839308-55839327 None:intergenic 35.0%
AGAGCAAATGCAGTATGTAT+TGG - chr1_4:55839399-55839418 None:intergenic 35.0%
AATAACCAGAGGTCTCAAAT+AGG - chr1_4:55839457-55839476 None:intergenic 35.0%
ATTCAAACTACCGAATCTTC+AGG + chr1_4:55839658-55839677 Msa0171200:CDS 35.0%
TTCAAACTACCGAATCTTCA+GGG + chr1_4:55839659-55839678 Msa0171200:CDS 35.0%
TGAATGCCTTTCAAATGTGA+AGG + chr1_4:55839732-55839751 Msa0171200:CDS 35.0%
ACAATCTCTATTGCAATCCA+AGG - chr1_4:55839758-55839777 None:intergenic 35.0%
GATTCTGGACTAATATCAGA+TGG - chr1_4:55839790-55839809 None:intergenic 35.0%
AGCTTCTGAGTTCAATTCAA+TGG - chr1_4:55839845-55839864 None:intergenic 35.0%
CAAGAATTGAAGGTTTCTTC+TGG + chr1_4:55839955-55839974 Msa0171200:CDS 35.0%
ACTCTCAAATGTGAAGGATT+TGG + chr1_4:55840041-55840060 Msa0171200:CDS 35.0%
AGATTTGGAAGATACAGATG+CGG + chr1_4:55840455-55840474 Msa0171200:CDS 35.0%
!! TTCTGGGGTTTCTTAATTTG+TGG + chr1_4:55840748-55840767 Msa0171200:intron 35.0%
!! TCTGGGGTTTCTTAATTTGT+GGG + chr1_4:55840749-55840768 Msa0171200:intron 35.0%
!! TTCTTAATTTGTGGGAACCT+TGG + chr1_4:55840757-55840776 Msa0171200:intron 35.0%
GATTGTACAAATTCATGCAC+AGG + chr1_4:55841007-55841026 Msa0171200:intron 35.0%
GTTCACAATTTGAAGAACAG+TGG + chr1_4:55841029-55841048 Msa0171200:intron 35.0%
TGACTCCTGCTATAAATACA+TGG - chr1_4:55841083-55841102 None:intergenic 35.0%
! ATTATTTCTCTAGGTTTCCG+AGG - chr1_4:55841198-55841217 None:intergenic 35.0%
TTGTCTAAGCATGTGATTCA+TGG + chr1_4:55841274-55841293 Msa0171200:intron 35.0%
CAAGTTGTACGTGAATTGTT+TGG - chr1_4:55841661-55841680 None:intergenic 35.0%
CGTAGAAAAATCACATAGGT+AGG + chr1_4:55841743-55841762 Msa0171200:intron 35.0%
AAATATGTGAACTCATGGAG+AGG + chr1_4:55841802-55841821 Msa0171200:intron 35.0%
CTCACATACTCAACAAAATG+GGG - chr1_4:55841858-55841877 None:intergenic 35.0%
GCTCACATACTCAACAAAAT+GGG - chr1_4:55841859-55841878 None:intergenic 35.0%
AGCTCACATACTCAACAAAA+TGG - chr1_4:55841860-55841879 None:intergenic 35.0%
AATCTGCTATTCCGTGAATT+TGG - chr1_4:55841906-55841925 None:intergenic 35.0%
AAATTCACGGAATAGCAGAT+TGG + chr1_4:55841905-55841924 Msa0171200:three_prime_UTR 35.0%
!! TCTAAATTTGGCTTGCACAT+TGG - chr1_4:55842066-55842085 None:intergenic 35.0%
GAGCGGTGAATATGAATTGA+AGG - chr1_4:55835503-55835522 None:intergenic 40.0%
TCCAATAGCGATTACAAGAG+CGG - chr1_4:55835520-55835539 None:intergenic 40.0%
ATATCGAACGCCTTTACAAC+GGG - chr1_4:55835706-55835725 None:intergenic 40.0%
!! GTTGTAAAGGCGTTCGATAT+TGG + chr1_4:55835706-55835725 Msa0171200:CDS 40.0%
! CGGTGCCAATGTATTTAACT+CGG + chr1_4:55836337-55836356 Msa0171200:CDS 40.0%
TGGAGCCGAGTTAAATACAT+TGG - chr1_4:55836345-55836364 None:intergenic 40.0%
GTATTTAACTCGGCTCCAAA+TGG + chr1_4:55836347-55836366 Msa0171200:CDS 40.0%
ATTTAACTCGGCTCCAAATG+GGG + chr1_4:55836349-55836368 Msa0171200:CDS 40.0%
GGCAACTAATGGTGTGTTTA+AGG + chr1_4:55836370-55836389 Msa0171200:CDS 40.0%
AGGATCGAATTTGATTGCAC+TGG + chr1_4:55836412-55836431 Msa0171200:CDS 40.0%
! TAAGATGTTTTACTGCCTCG+AGG + chr1_4:55836569-55836588 Msa0171200:intron 40.0%
TCACTTAAGTGAGTGCTCTT+TGG - chr1_4:55836602-55836621 None:intergenic 40.0%
! CTTTCTAATCATGCTGCTTG+GGG - chr1_4:55836786-55836805 None:intergenic 40.0%
GGAAAACCTTGTCAGTTCAA+GGG - chr1_4:55836874-55836893 None:intergenic 40.0%
! CAGAAACCTCATGTTGGTTA+AGG - chr1_4:55836916-55836935 None:intergenic 40.0%
ATGAGGTTTCTGACCCTTTA+TGG + chr1_4:55836924-55836943 Msa0171200:intron 40.0%
ACTATTTAACTGGGACAAGC+CGG + chr1_4:55837075-55837094 Msa0171200:CDS 40.0%
GACTCTTGAATTGTGGAAAC+AGG + chr1_4:55837113-55837132 Msa0171200:CDS 40.0%
GCTAAAGTTCGATCATGAGA+AGG - chr1_4:55837144-55837163 None:intergenic 40.0%
! AACTGAGATATGAGGGTACA+TGG + chr1_4:55837186-55837205 Msa0171200:intron 40.0%
! CCTAAAGTACCACCGATATT+AGG - chr1_4:55837516-55837535 None:intergenic 40.0%
CCTAATATCGGTGGTACTTT+AGG + chr1_4:55837513-55837532 Msa0171200:CDS 40.0%
! ATCGGTGGTACTTTAGGTTA+TGG + chr1_4:55837519-55837538 Msa0171200:CDS 40.0%
GTTTGCCTTGATGAATTTGG+TGG + chr1_4:55837726-55837745 Msa0171200:CDS 40.0%
TTGTCTCCTGAAGGTTAGAA+GGG - chr1_4:55837764-55837783 None:intergenic 40.0%
GATGTCTAACCTCAGATTGA+AGG - chr1_4:55837815-55837834 None:intergenic 40.0%
GCTAAAGGTTATGTTCTCCA+GGG + chr1_4:55837913-55837932 Msa0171200:intron 40.0%
CCAATTCCCTTTAATAACCC+TGG - chr1_4:55837933-55837952 None:intergenic 40.0%
CCAGGGTTATTAAAGGGAAT+TGG + chr1_4:55837930-55837949 Msa0171200:intron 40.0%
ACTGTTAAAGAGTGGCTTGA+TGG + chr1_4:55838261-55838280 Msa0171200:CDS 40.0%
CTGTTAAAGAGTGGCTTGAT+GGG + chr1_4:55838262-55838281 Msa0171200:CDS 40.0%
TGTTAAAGAGTGGCTTGATG+GGG + chr1_4:55838263-55838282 Msa0171200:CDS 40.0%
! TTGTTTGGAACTTTGAGTGG+TGG + chr1_4:55838408-55838427 Msa0171200:intron 40.0%
! TCAGACCTGGAATCTTTTCA+AGG - chr1_4:55838594-55838613 None:intergenic 40.0%
! GGGCTAAGATTTAAAGTCTC+AGG - chr1_4:55838923-55838942 None:intergenic 40.0%
TCTGCTACATCAAGGATTTC+AGG + chr1_4:55839041-55839060 Msa0171200:CDS 40.0%
CTGCTACATCAAGGATTTCA+GGG + chr1_4:55839042-55839061 Msa0171200:CDS 40.0%
TGCTACATCAAGGATTTCAG+GGG + chr1_4:55839043-55839062 Msa0171200:CDS 40.0%
ATTTCAGGGGAAACTGGTAT+AGG + chr1_4:55839056-55839075 Msa0171200:CDS 40.0%
!! CATTTCTAAGGTTGCTTGTG+TGG + chr1_4:55839192-55839211 Msa0171200:intron 40.0%
TAAGGTTGCTTGTGTGGAAT+TGG + chr1_4:55839198-55839217 Msa0171200:intron 40.0%
GAATATATCACGTTGGCAAG+GGG - chr1_4:55839307-55839326 None:intergenic 40.0%
CTGAATATATCACGTTGGCA+AGG - chr1_4:55839309-55839328 None:intergenic 40.0%
GCCAATTACTCTGAGTGAAA+TGG + chr1_4:55839578-55839597 Msa0171200:intron 40.0%
GCCATTTCACTCAGAGTAAT+TGG - chr1_4:55839582-55839601 None:intergenic 40.0%
!!! TTCTTGTTTTGATCCTGGAC+AGG + chr1_4:55839608-55839627 Msa0171200:intron 40.0%
GTTTGAATTTGAAGGCCTGA+TGG - chr1_4:55839646-55839665 None:intergenic 40.0%
GAATGTAAAAGAGCGAACAG+TGG + chr1_4:55839681-55839700 Msa0171200:CDS 40.0%
GGATTGCAATAGAGATTGTG+AGG + chr1_4:55839759-55839778 Msa0171200:CDS 40.0%
CCAGAAGAAACCTTTGATTC+TGG - chr1_4:55839805-55839824 None:intergenic 40.0%
CCAGAATCAAAGGTTTCTTC+TGG + chr1_4:55839802-55839821 Msa0171200:CDS 40.0%
! ACTCTCAAATGTGAAGGTGT+TGG + chr1_4:55839888-55839907 Msa0171200:CDS 40.0%
TTCGGAATTCAATGGAATGG+AGG - chr1_4:55839995-55840014 None:intergenic 40.0%
AGCTTCGGAATTCAATGGAA+TGG - chr1_4:55839998-55840017 None:intergenic 40.0%
! CGTTTAGCTTCGGAATTCAA+TGG - chr1_4:55840003-55840022 None:intergenic 40.0%
CCAGAATTGAAGGTTTCATC+CGG + chr1_4:55840105-55840124 Msa0171200:CDS 40.0%
AGAAGACTCGTAATCATAGC+CGG - chr1_4:55840127-55840146 None:intergenic 40.0%
AGACCTATAGAAGAGACTTC+AGG + chr1_4:55840309-55840328 Msa0171200:CDS 40.0%
AGATCAAGATGATACTGGTG+TGG + chr1_4:55840341-55840360 Msa0171200:CDS 40.0%
TCATTTGGTAAACCTGGAGA+AGG - chr1_4:55840378-55840397 None:intergenic 40.0%
TCGAAATGTGGAGGAAGATT+TGG + chr1_4:55840440-55840459 Msa0171200:CDS 40.0%
GCTAACGACGATGCATATTA+TGG + chr1_4:55840498-55840517 Msa0171200:CDS 40.0%
GACGATGCATATTATGGCAA+TGG + chr1_4:55840504-55840523 Msa0171200:CDS 40.0%
! GATGCTGGTACTCTATTTTC+CGG + chr1_4:55840564-55840583 Msa0171200:CDS 40.0%
! TTTCCTCTGTCCTTTTCTGT+GGG - chr1_4:55840603-55840622 None:intergenic 40.0%
! ATTTCCTCTGTCCTTTTCTG+TGG - chr1_4:55840604-55840623 None:intergenic 40.0%
ACAGAAAAGGACAGAGGAAA+TGG + chr1_4:55840603-55840622 Msa0171200:CDS 40.0%
TATATCCCATCATCGGAAAG+AGG + chr1_4:55840704-55840723 Msa0171200:intron 40.0%
GTACAGAATGAAGGGCAATA+AGG - chr1_4:55840854-55840873 None:intergenic 40.0%
! AGCTAACTTGTCAACACACA+TGG + chr1_4:55841158-55841177 Msa0171200:intron 40.0%
! CTGAGCGTCATTATTTCTCT+AGG - chr1_4:55841207-55841226 None:intergenic 40.0%
CTAGAGAAATAATGACGCTC+AGG + chr1_4:55841205-55841224 Msa0171200:intron 40.0%
GGTGATTAAGTCGGAAATTC+AGG + chr1_4:55841446-55841465 Msa0171200:intron 40.0%
! CCTATGTGATTTTTCTACGG+CGG - chr1_4:55841742-55841761 None:intergenic 40.0%
TAGCTTAACCAGTGCAGATT+TGG + chr1_4:55841961-55841980 Msa0171200:three_prime_UTR 40.0%
TGTATCTTCCAAATCTGCAC+TGG - chr1_4:55841972-55841991 None:intergenic 40.0%
GCTAACGACGATGCATATTA+TGG + chr1_4:55840498-55840517 Msa0171200:CDS 40.0%
GACGATGCATATTATGGCAA+TGG + chr1_4:55840504-55840523 Msa0171200:CDS 40.0%
ACGTAGATGCTTGTAATCGG+TGG + chr1_4:55835453-55835472 Msa0171200:exon 45.0%
TTGTAATCGGTGGTGTATCG+TGG + chr1_4:55835463-55835482 Msa0171200:CDS 45.0%
TGTAATCGGTGGTGTATCGT+GGG + chr1_4:55835464-55835483 Msa0171200:CDS 45.0%
ACCGCTCTTGTAATCGCTAT+TGG + chr1_4:55835516-55835535 Msa0171200:CDS 45.0%
GAAGTCGACGCTAATTTCGA+AGG + chr1_4:55835579-55835598 Msa0171200:CDS 45.0%
AGTTAAGAACACCGGGCATT+GGG - chr1_4:55835632-55835651 None:intergenic 45.0%
TCATCGGAGTTAAGAACACC+GGG - chr1_4:55835639-55835658 None:intergenic 45.0%
CTCATCGGAGTTAAGAACAC+CGG - chr1_4:55835640-55835659 None:intergenic 45.0%
AACAGCACAAACAGGCTCAT+CGG - chr1_4:55835655-55835674 None:intergenic 45.0%
!! TTTACAACGGGAGCACTTCT+TGG - chr1_4:55835694-55835713 None:intergenic 45.0%
!! AAGAAGTGCTCCCGTTGTAA+AGG + chr1_4:55835693-55835712 Msa0171200:CDS 45.0%
TTTGGCTGTGTGTGTTGTGT+TGG + chr1_4:55836243-55836262 Msa0171200:intron 45.0%
CTGTTGACATTCTGTTGAGC+TGG - chr1_4:55836273-55836292 None:intergenic 45.0%
CAGAATGTCAACAGTCGCAT+TGG + chr1_4:55836279-55836298 Msa0171200:CDS 45.0%
CAACAGTCGCATTGGAATTC+CGG + chr1_4:55836287-55836306 Msa0171200:CDS 45.0%
AACAGTCGCATTGGAATTCC+GGG + chr1_4:55836288-55836307 Msa0171200:CDS 45.0%
ACACCATTAGTTGCCCCATT+TGG - chr1_4:55836365-55836384 None:intergenic 45.0%
! TGTTTAAGGCTTCTGCTGCT+GGG + chr1_4:55836384-55836403 Msa0171200:CDS 45.0%
! TTGATTGCACTGGTACCTAG+TGG + chr1_4:55836422-55836441 Msa0171200:CDS 45.0%
TTTAGGCTTCTTGATAGGCC+TGG - chr1_4:55836459-55836478 None:intergenic 45.0%
CACTTCACCTTCGACAACAA+GGG - chr1_4:55836535-55836554 None:intergenic 45.0%
AAACCTTGTCAGTTCAAGGG+AGG - chr1_4:55836871-55836890 None:intergenic 45.0%
GGGAAAACCTTGTCAGTTCA+AGG - chr1_4:55836875-55836894 None:intergenic 45.0%
! GAACTGACAAGGTTTTCCCT+AGG + chr1_4:55836876-55836895 Msa0171200:intron 45.0%
AAGGGTCAGAAACCTCATGT+TGG - chr1_4:55836922-55836941 None:intergenic 45.0%
CCAAGGCAAGGAACCATAAA+GGG - chr1_4:55836940-55836959 None:intergenic 45.0%
ACCAAGGCAAGGAACCATAA+AGG - chr1_4:55836941-55836960 None:intergenic 45.0%
TAGACAAAGTCACCAAGGCA+AGG - chr1_4:55836952-55836971 None:intergenic 45.0%
CTATTTAACTGGGACAAGCC+GGG + chr1_4:55837076-55837095 Msa0171200:CDS 45.0%
CAATTCAAGAGTCCACAAGG+AGG - chr1_4:55837106-55837125 None:intergenic 45.0%
CCACAATTCAAGAGTCCACA+AGG - chr1_4:55837109-55837128 None:intergenic 45.0%
CCTTGTGGACTCTTGAATTG+TGG + chr1_4:55837106-55837125 Msa0171200:CDS 45.0%
TCCAACAAGTAGGCAACAAG+CGG - chr1_4:55837282-55837301 None:intergenic 45.0%
! TGTTGCCTACTTGTTGGAGA+AGG + chr1_4:55837284-55837303 Msa0171200:CDS 45.0%
! GTTGCCTACTTGTTGGAGAA+GGG + chr1_4:55837285-55837304 Msa0171200:CDS 45.0%
AAGAGCAAGGCTAAGTTCAC+AGG + chr1_4:55837458-55837477 Msa0171200:CDS 45.0%
TCTCGTTTGCCTAATATCGG+TGG + chr1_4:55837504-55837523 Msa0171200:CDS 45.0%
GTTGTCTCCTGAAGGTTAGA+AGG - chr1_4:55837765-55837784 None:intergenic 45.0%
! GGATAATGGTTGTCTCCTGA+AGG - chr1_4:55837773-55837792 None:intergenic 45.0%
GGCTAAAGGTTATGTTCTCC+AGG + chr1_4:55837912-55837931 Msa0171200:intron 45.0%
ATCTAGACATTCCTCCAACG+AGG - chr1_4:55838235-55838254 None:intergenic 45.0%
! ATGTTATGCTGCTGTTTGGC+AGG + chr1_4:55838501-55838520 Msa0171200:intron 45.0%
CAGGTGTCAGGACTATGTAA+AGG + chr1_4:55838520-55838539 Msa0171200:intron 45.0%
GTCAGGACTATGTAAAGGCA+TGG + chr1_4:55838525-55838544 Msa0171200:CDS 45.0%
GGATGTTGTACATGCAGAGT+GGG + chr1_4:55838864-55838883 Msa0171200:intron 45.0%
CTCCAGCTTCACTCATGTAA+GGG - chr1_4:55838943-55838962 None:intergenic 45.0%
TCTCCAGCTTCACTCATGTA+AGG - chr1_4:55838944-55838963 None:intergenic 45.0%
TACATGAGTGAAGCTGGAGA+TGG + chr1_4:55838944-55838963 Msa0171200:CDS 45.0%
TCAAGGATTTCAGGGGAAAC+TGG + chr1_4:55839050-55839069 Msa0171200:CDS 45.0%
! TTCCACCTATTTGAGACCTC+TGG + chr1_4:55839449-55839468 Msa0171200:intron 45.0%
AACCAGAGGTCTCAAATAGG+TGG - chr1_4:55839454-55839473 None:intergenic 45.0%
AATTTGAAGGCCTGATGGTC+GGG - chr1_4:55839641-55839660 None:intergenic 45.0%
GAATTTGAAGGCCTGATGGT+CGG - chr1_4:55839642-55839661 None:intergenic 45.0%
AAAAGAGCGAACAGTGGAAG+TGG + chr1_4:55839687-55839706 Msa0171200:CDS 45.0%
!! TCAGCTTGTTCAGTTTTGCC+AGG - chr1_4:55839715-55839734 None:intergenic 45.0%
CCAAGGCCTTCACATTTGAA+AGG - chr1_4:55839741-55839760 None:intergenic 45.0%
CCTTTCAAATGTGAAGGCCT+TGG + chr1_4:55839738-55839757 Msa0171200:CDS 45.0%
AGCTAAAAGAGAGCAGTCTG+AGG + chr1_4:55839861-55839880 Msa0171200:CDS 45.0%
GGACACACTCTCAAATGTGA+AGG + chr1_4:55839882-55839901 Msa0171200:CDS 45.0%
! AGACTGCTCTCGTTTAGCTT+CGG - chr1_4:55840013-55840032 None:intergenic 45.0%
GGACACACTCTCAAATGTGA+AGG + chr1_4:55839882-55839901 Msa0171200:CDS 45.0%
!! AAGGATTTGGCTTGCAGTAG+AGG + chr1_4:55840054-55840073 Msa0171200:CDS 45.0%
CCGGATGAAACCTTCAATTC+TGG - chr1_4:55840108-55840127 None:intergenic 45.0%
CAGCCTGAAGTCTCTTCTAT+AGG - chr1_4:55840315-55840334 None:intergenic 45.0%
GCGCAAGATCAAGATGATAC+TGG + chr1_4:55840336-55840355 Msa0171200:CDS 45.0%
AAGATGATACTGGTGTGGCT+GGG + chr1_4:55840346-55840365 Msa0171200:CDS 45.0%
CTTCATGTGGAGTAGCAGAT+TGG - chr1_4:55840545-55840564 None:intergenic 45.0%
! AGAGTACCAGCATCTTCATG+TGG - chr1_4:55840558-55840577 None:intergenic 45.0%
TGCTTCCTATCCCACAGAAA+AGG + chr1_4:55840590-55840609 Msa0171200:CDS 45.0%
! TCTGTCCTTTTCTGTGGGAT+AGG - chr1_4:55840598-55840617 None:intergenic 45.0%
TATCCCACAGAAAAGGACAG+AGG + chr1_4:55840597-55840616 Msa0171200:CDS 45.0%
ATGAAGGGCAATAAGGACCA+AGG - chr1_4:55840847-55840866 None:intergenic 45.0%
GTTATAGCATGCATGAGCTG+TGG - chr1_4:55841479-55841498 None:intergenic 45.0%
CCGCCGTAGAAAAATCACAT+AGG + chr1_4:55841739-55841758 Msa0171200:intron 45.0%
GTGAACTCATGGAGAGGAAT+AGG + chr1_4:55841808-55841827 Msa0171200:intron 45.0%
! GTTAAGAACACCGGGCATTG+GGG - chr1_4:55835631-55835650 None:intergenic 50.0%
GAGTTAAGAACACCGGGCAT+TGG - chr1_4:55835633-55835652 None:intergenic 50.0%
GAAGCGCAAACAGCACAAAC+AGG - chr1_4:55835663-55835682 None:intergenic 50.0%
GCTCCAAATGGGGCAACTAA+TGG + chr1_4:55836359-55836378 Msa0171200:CDS 50.0%
! GTGTTTAAGGCTTCTGCTGC+TGG + chr1_4:55836383-55836402 Msa0171200:CDS 50.0%
! GTTTAAGGCTTCTGCTGCTG+GGG + chr1_4:55836385-55836404 Msa0171200:CDS 50.0%
! TTTAAGGCTTCTGCTGCTGG+GGG + chr1_4:55836386-55836405 Msa0171200:CDS 50.0%
! GCACTGGTACCTAGTGGTTA+CGG + chr1_4:55836428-55836447 Msa0171200:CDS 50.0%
!! CTGGAAGTACCGTAACCACT+AGG - chr1_4:55836440-55836459 None:intergenic 50.0%
CTAGTGGTTACGGTACTTCC+AGG + chr1_4:55836438-55836457 Msa0171200:CDS 50.0%
GCACTTCACCTTCGACAACA+AGG - chr1_4:55836536-55836555 None:intergenic 50.0%
GAAGGTGAAGTGCATCCTTG+AGG + chr1_4:55836543-55836562 Msa0171200:intron 50.0%
ATGCCTCCCTTGAACTGACA+AGG + chr1_4:55836865-55836884 Msa0171200:intron 50.0%
GCAGCTCCTTAACCAACATG+AGG + chr1_4:55836907-55836926 Msa0171200:intron 50.0%
CCCTTTATGGTTCCTTGCCT+TGG + chr1_4:55836937-55836956 Msa0171200:intron 50.0%
AGTCCACAAGGAGGAAATCC+CGG - chr1_4:55837097-55837116 None:intergenic 50.0%
AGGATGCTCACGAGTTCATG+AGG + chr1_4:55837550-55837569 Msa0171200:CDS 50.0%
AGCTGTCCCTTCTAACCTTC+AGG + chr1_4:55837755-55837774 Msa0171200:CDS 50.0%
GGCGACCACCAAAAATGTGT+TGG - chr1_4:55837794-55837813 None:intergenic 50.0%
GGGATGTTGTACATGCAGAG+TGG + chr1_4:55838863-55838882 Msa0171200:intron 50.0%
TGTTGTACATGCAGAGTGGG+AGG + chr1_4:55838867-55838886 Msa0171200:intron 50.0%
TACATGCAGAGTGGGAGGTT+TGG + chr1_4:55838872-55838891 Msa0171200:intron 50.0%
AGCCCTTACATGAGTGAAGC+TGG + chr1_4:55838938-55838957 Msa0171200:CDS 50.0%
GGTTGCTTGTGTGGAATTGG+AGG + chr1_4:55839201-55839220 Msa0171200:intron 50.0%
TGCTTGTGTGGAATTGGAGG+AGG + chr1_4:55839204-55839223 Msa0171200:CDS 50.0%
!! ATTGGAGGAGGTGCTTTCTC+AGG + chr1_4:55839216-55839235 Msa0171200:CDS 50.0%
!! TTGGAGGAGGTGCTTTCTCA+GGG + chr1_4:55839217-55839236 Msa0171200:CDS 50.0%
GGCTTGCAGTAGAGATTGTG+AGG + chr1_4:55839909-55839928 Msa0171200:CDS 50.0%
AGCTAAACGAGAGCAGTCTG+CGG + chr1_4:55840014-55840033 Msa0171200:CDS 50.0%
CAAGATGATACTGGTGTGGC+TGG + chr1_4:55840345-55840364 Msa0171200:CDS 50.0%
GCTACTCCACATGAAGATGC+TGG + chr1_4:55840549-55840568 Msa0171200:CDS 50.0%
TGTGGGATAGGAAGCAACAC+CGG - chr1_4:55840586-55840605 None:intergenic 50.0%
ATCCCATCATCGGAAAGAGG+TGG + chr1_4:55840707-55840726 Msa0171200:intron 50.0%
CACCACCTCTTTCCGATGAT+GGG - chr1_4:55840712-55840731 None:intergenic 50.0%
TCACCACCTCTTTCCGATGA+TGG - chr1_4:55840713-55840732 None:intergenic 50.0%
ATCGGAAAGAGGTGGTGAGT+TGG + chr1_4:55840715-55840734 Msa0171200:intron 50.0%
TCGGAAAGAGGTGGTGAGTT+GGG + chr1_4:55840716-55840735 Msa0171200:intron 50.0%
TGGTCGTGAACTCACTACCT+CGG + chr1_4:55841178-55841197 Msa0171200:intron 50.0%
ATTGGGGAGGTGGGAGAAGA+AGG - chr1_4:55835615-55835634 None:intergenic 55.0%
!! ACAACGGGAGCACTTCTTGG+TGG - chr1_4:55835691-55835710 None:intergenic 55.0%
CTCTTTGGCATCTCTCCTCG+AGG - chr1_4:55836587-55836606 None:intergenic 55.0%
! TCAAGGGAGGCATATGCGCT+TGG - chr1_4:55836858-55836877 None:intergenic 55.0%
! AGGTTTTCCCTAGGCACCAG+AGG + chr1_4:55836885-55836904 Msa0171200:intron 55.0%
GTTGGTTAAGGAGCTGCCTC+TGG - chr1_4:55836904-55836923 None:intergenic 55.0%
AAGCCGGGATTTCCTCCTTG+TGG + chr1_4:55837091-55837110 Msa0171200:CDS 55.0%
! GCCGCTTGTTGCCTACTTGT+TGG + chr1_4:55837278-55837297 Msa0171200:CDS 55.0%
GTGGCCCTTCTCCAACAAGT+AGG - chr1_4:55837292-55837311 None:intergenic 55.0%
TGGTGGTCGCCTTCAATCTG+AGG + chr1_4:55837803-55837822 Msa0171200:CDS 55.0%
TCATGGAGATGCTGCCTCGT+TGG + chr1_4:55838218-55838237 Msa0171200:CDS 55.0%
CGAACAGTGGAAGTGGAACC+TGG + chr1_4:55839694-55839713 Msa0171200:CDS 55.0%
GGCTTGCAGTAGAGGTTGTG+AGG + chr1_4:55840062-55840081 Msa0171200:CDS 55.0%
!! AAGAACACCGGGCATTGGGG+AGG - chr1_4:55835628-55835647 None:intergenic 60.0%
GCTTCTGCTGCTGGGGGTAA+AGG + chr1_4:55836392-55836411 Msa0171200:CDS 60.0%
TGGAGATGCTGCCTCGTTGG+AGG + chr1_4:55838221-55838240 Msa0171200:CDS 60.0%
! GCTGCTGTTTGGCAGGTGTC+AGG + chr1_4:55838508-55838527 Msa0171200:intron 60.0%
AGGTGTACTGCCCGACCATC+AGG + chr1_4:55839628-55839647 Msa0171200:intron 60.0%
! GCTGGGTCTTGTCCTTCTCC+AGG + chr1_4:55840363-55840382 Msa0171200:CDS 60.0%
TCTCCCACCTCCCCAATGCC+CGG + chr1_4:55835618-55835637 Msa0171200:CDS 65.0%
!! ACACCGGGCATTGGGGAGGT+GGG - chr1_4:55835624-55835643 None:intergenic 65.0%
!! AACACCGGGCATTGGGGAGG+TGG - chr1_4:55835625-55835644 None:intergenic 65.0%
GGAGCTGCCTCTGGTGCCTA+GGG - chr1_4:55836895-55836914 None:intergenic 65.0%
AGGAGCTGCCTCTGGTGCCT+AGG - chr1_4:55836896-55836915 None:intergenic 65.0%
GTCGGGCAGTACACCTGTCC+AGG - chr1_4:55839624-55839643 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 55835293 55842085 55835293 ID=Msa0171200;Name=Msa0171200
chr1_4 mRNA 55835293 55842085 55835293 ID=Msa0171200-mRNA-1;Parent=Msa0171200;Name=Msa0171200-mRNA-1;_AED=0.11;_eAED=0.11;_QI=166|1|1|1|0.90|0.83|12|194|831
chr1_4 exon 55835293 55835727 55835293 ID=Msa0171200-mRNA-1:exon:16752;Parent=Msa0171200-mRNA-1
chr1_4 exon 55836274 55836481 55836274 ID=Msa0171200-mRNA-1:exon:16753;Parent=Msa0171200-mRNA-1
chr1_4 exon 55837046 55837134 55837046 ID=Msa0171200-mRNA-1:exon:16754;Parent=Msa0171200-mRNA-1
chr1_4 exon 55837236 55837321 55837236 ID=Msa0171200-mRNA-1:exon:16755;Parent=Msa0171200-mRNA-1
chr1_4 exon 55837409 55837571 55837409 ID=Msa0171200-mRNA-1:exon:16756;Parent=Msa0171200-mRNA-1
chr1_4 exon 55837701 55837824 55837701 ID=Msa0171200-mRNA-1:exon:16757;Parent=Msa0171200-mRNA-1
chr1_4 exon 55838150 55838307 55838150 ID=Msa0171200-mRNA-1:exon:16758;Parent=Msa0171200-mRNA-1
chr1_4 exon 55838523 55838607 55838523 ID=Msa0171200-mRNA-1:exon:16759;Parent=Msa0171200-mRNA-1
chr1_4 exon 55838881 55839093 55838881 ID=Msa0171200-mRNA-1:exon:16760;Parent=Msa0171200-mRNA-1
chr1_4 exon 55839202 55839263 55839202 ID=Msa0171200-mRNA-1:exon:16761;Parent=Msa0171200-mRNA-1
chr1_4 exon 55839630 55840679 55839630 ID=Msa0171200-mRNA-1:exon:16762;Parent=Msa0171200-mRNA-1
chr1_4 exon 55841903 55842085 55841903 ID=Msa0171200-mRNA-1:exon:16763;Parent=Msa0171200-mRNA-1
chr1_4 five_prime_UTR 55835293 55835458 55835293 ID=Msa0171200-mRNA-1:five_prime_utr;Parent=Msa0171200-mRNA-1
chr1_4 CDS 55835459 55835727 55835459 ID=Msa0171200-mRNA-1:cds;Parent=Msa0171200-mRNA-1
chr1_4 CDS 55836274 55836481 55836274 ID=Msa0171200-mRNA-1:cds;Parent=Msa0171200-mRNA-1
chr1_4 CDS 55837046 55837134 55837046 ID=Msa0171200-mRNA-1:cds;Parent=Msa0171200-mRNA-1
chr1_4 CDS 55837236 55837321 55837236 ID=Msa0171200-mRNA-1:cds;Parent=Msa0171200-mRNA-1
chr1_4 CDS 55837409 55837571 55837409 ID=Msa0171200-mRNA-1:cds;Parent=Msa0171200-mRNA-1
chr1_4 CDS 55837701 55837824 55837701 ID=Msa0171200-mRNA-1:cds;Parent=Msa0171200-mRNA-1
chr1_4 CDS 55838150 55838307 55838150 ID=Msa0171200-mRNA-1:cds;Parent=Msa0171200-mRNA-1
chr1_4 CDS 55838523 55838607 55838523 ID=Msa0171200-mRNA-1:cds;Parent=Msa0171200-mRNA-1
chr1_4 CDS 55838881 55839093 55838881 ID=Msa0171200-mRNA-1:cds;Parent=Msa0171200-mRNA-1
chr1_4 CDS 55839202 55839263 55839202 ID=Msa0171200-mRNA-1:cds;Parent=Msa0171200-mRNA-1
chr1_4 CDS 55839630 55840668 55839630 ID=Msa0171200-mRNA-1:cds;Parent=Msa0171200-mRNA-1
chr1_4 three_prime_UTR 55840669 55840679 55840669 ID=Msa0171200-mRNA-1:three_prime_utr;Parent=Msa0171200-mRNA-1
chr1_4 three_prime_UTR 55841903 55842085 55841903 ID=Msa0171200-mRNA-1:three_prime_utr;Parent=Msa0171200-mRNA-1
Gene Sequence

>Msa0171200

ATGCTTGTAATCGGTGGTGTATCGTGGGATCTCAATCGATTCCTTCAATTCATATTCACCGCTCTTGTAATCGCTATTGGATTGCACACTCTTGTCAAGAACACCGCTTCTAAATACTTCGAAGTCGACGCTAATTTCGAAGGAGATCATCATCCTTCTTCTCCCACCTCCCCAATGCCCGGTGTTCTTAACTCCGATGAGCCTGTTTGTGCTGTTTGCGCTTCTCATGCCACCAAGAAGTGCTCCCGTTGTAAAGGCGTTCGATATTGCTCAACAGAATGTCAACAGTCGCATTGGAATTCCGGGCATAAGAAAAAATGCAAAAGTAATAGCGGTGCCAATGTATTTAACTCGGCTCCAAATGGGGCAACTAATGGTGTGTTTAAGGCTTCTGCTGCTGGGGGTAAAGGATCGAATTTGATTGCACTGGTACCTAGTGGTTACGGTACTTCCAGGCCTATCAAGAAGCCTAAAGATGTTCTTTTTCCTTATGATGAATTTGTTAAACTATTTAACTGGGACAAGCCGGGATTTCCTCCTTGTGGACTCTTGAATTGTGGAAACAGTTGTTTTGCGAATGTGGTTCTTCAGTGTCTCTCATTCACAAAGCCGCTTGTTGCCTACTTGTTGGAGAAGGGCCACCGAAATGAATGCATTTGTAATGATTGGTGCTTTCTATGTGAGTTTGAAAGTCATGTTGAAAGAGCAAGGCTAAGTTCACAGGCGTTTTCTCCAATGAATATTCTATCTCGTTTGCCTAATATCGGTGGTACTTTAGGTTATGGAAGACAAGAGGATGCTCACGAGTTCATGAGGTTTTCAATTGATACTATGCAATCTGTTTGCCTTGATGAATTTGGTGGAGAAAAAGCTGTCCCTTCTAACCTTCAGGAGACAACCATTATCCAACACATTTTTGGTGGTCGCCTTCAATCTGAGGTTATTTGCACAAAGTGTGATAAGACTTCAAATCAGTATGAAAGTATGATGGACTTGACAGTTGAAATTCATGGAGATGCTGCCTCGTTGGAGGAATGTCTAGATCAGTTTACTGTTAAAGAGTGGCTTGATGGGGAAAATATGTATAAATGTGAGGGGTGTCAGGACTATGTAAAGGCATGGAAACGTCTTACTGTGAAATGTGCTCCAAATATTCTTACAATTGCCTTGAAAAGATTCCAGAGTGGGAGGTTTGGAAAACTTAACAAAAGAGTAGCCTTCCCTGAGACTTTAAATCTTAGCCCTTACATGAGTGAAGCTGGAGATGGATCTGATATCTATAATTTGTATGCTGTTGTAGTCCATATTGATATGTTAAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGATTTCAGGGGAAACTGGTATAGGATTGATGACTCAAAGGTTGCTTGTGTGGAATTGGAGGAGGTGCTTTCTCAGGGAGCATATATGCTATTGTATAAAAGGTGTACTGCCCGACCATCAGGCCTTCAAATTCAAACTACCGAATCTTCAGGGAATGTAAAAGAGCGAACAGTGGAAGTGGAACCTGGCAAAACTGAACAAGCTGAATGCCTTTCAAATGTGAAGGCCTTGGATTGCAATAGAGATTGTGAGGTTTCACCATCTGATATTAGTCCAGAATCAAAGGTTTCTTCTGGTGATGAATACGAGTCTTCCATTGAATTGAACTCAGAAGCTAAAAGAGAGCAGTCTGAGGACACACTCTCAAATGTGAAGGTGTTGGCTTGCAGTAGAGATTGTGAGGTTTCACCATCTGATAATATTAGTCAAGAATTGAAGGTTTCTTCTGGTTATGAATATGAGTCCTCCATTCCATTGAATTCCGAAGCTAAACGAGAGCAGTCTGCGGACACACTCTCAAATGTGAAGGATTTGGCTTGCAGTAGAGGTTGTGAGGTTGTACCATCTGATATTAGTCCAGAATTGAAGGTTTCATCCGGCTATGATTACGAGTCTTCTGTTGAAGTGAACTCAGAAGCTAAAAGAGAGCAGTCTGACGCAGACATGATTGATGTTGAGTCAACTGATAATTGTAATGATATTTCTTATAGTGCTGTTGATGAATCATCTTATTTACCCATTTCTCATGTTGTTGAAGATTTGATTGATGTGGATATGGGAAGACCTATAGAAGAGACTTCAGGCTGTGCGCAAGATCAAGATGATACTGGTGTGGCTGGGTCTTGTCCTTCTCCAGGTTTACCAAATGATTTTTCTTTCTTGGATAAGCATTCTTCTGTTTCAATAGATTATCGAAATGTGGAGGAAGATTTGGAAGATACAGATGCGGTTAAATGCAAGTTGCTAACAGCTAACGACGATGCATATTATGGCAATGGATATGTTAGTGCAAACCAATCTGCTACTCCACATGAAGATGCTGGTACTCTATTTTCCGGTGTTGCTTCCTATCCCACAGAAAAGGACAGAGGAAATGGAATTAAGAAAGTGGAAATATCAGCGGATAAGTTAATAATGTAG
Protein sequence

>Msa0171200

MLVIGGVSWDLNRFLQFIFTALVIAIGLHTLVKNTASKYFEVDANFEGDHHPSSPTSPMPGVLNSDEPVCAVCASHATKKCSRCKGVRYCSTECQQSHWNSGHKKKCKSNSGANVFNSAPNGATNGVFKASAAGGKGSNLIALVPSGYGTSRPIKKPKDVLFPYDEFVKLFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTKPLVAYLLEKGHRNECICNDWCFLCEFESHVERARLSSQAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFSIDTMQSVCLDEFGGEKAVPSNLQETTIIQHIFGGRLQSEVICTKCDKTSNQYESMMDLTVEIHGDAASLEECLDQFTVKEWLDGENMYKCEGCQDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRVAFPETLNLSPYMSEAGDGSDIYNLYAVVVHIDMLNASFFGHYICYIKDFRGNWYRIDDSKVACVELEEVLSQGAYMLLYKRCTARPSGLQIQTTESSGNVKERTVEVEPGKTEQAECLSNVKALDCNRDCEVSPSDISPESKVSSGDEYESSIELNSEAKREQSEDTLSNVKVLACSRDCEVSPSDNISQELKVSSGYEYESSIPLNSEAKREQSADTLSNVKDLACSRGCEVVPSDISPELKVSSGYDYESSVEVNSEAKREQSDADMIDVESTDNCNDISYSAVDESSYLPISHVVEDLIDVDMGRPIEETSGCAQDQDDTGVAGSCPSPGLPNDFSFLDKHSSVSIDYRNVEEDLEDTDAVKCKLLTANDDAYYGNGYVSANQSATPHEDAGTLFSGVASYPTEKDRGNGIKKVEISADKLIM*