AlfalfaGEDB | Msa1360200

M. sativa cultivar zhongmu-4 / Msa1360200

KEGG: -
GO: -
PFAM: PF20235.1

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1360200	XP_003594059.2	98.295	880	15	0	1	880	1	880	0.0	1767

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1360200	sp\|Q0WPJ7\|RF298_ARATH	37.320	903	435	20	5	879	14	813	6.96e-155	478

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1360200	G7IFN5	98.295	880	15	0	1	880	1	880	0.0	1767

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005270	Msa1360200	0.805576	1.248685e-49	-8.615850e-47
Msa0037120	Msa1360200	0.809025	2.320285e-50	-8.615850e-47
Msa0059890	Msa1360200	0.822177	2.724059e-53	-8.615850e-47
Msa0076700	Msa1360200	0.809239	2.087717e-50	-8.615850e-47
Msa0077180	Msa1360200	0.814137	1.795640e-51	-8.615850e-47
Msa0077450	Msa1360200	0.821765	3.391936e-53	-8.615850e-47
Msa0083090	Msa1360200	0.812346	4.440398e-51	-8.615850e-47
Msa0084340	Msa1360200	0.814995	1.159856e-51	-8.615850e-47
Msa0085370	Msa1360200	0.804603	1.995799e-49	-8.615850e-47
Msa0092440	Msa1360200	0.842871	1.983794e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1360200	MtrunA17_Chr2g0286891	98.295	880	15	0	1	880	1	880	0.0	1767
Msa1360200	MtrunA17_Chr1g0196471	33.938	772	381	19	117	877	75	728	2.57e-110	355
Msa1360200	MtrunA17_Chr4g0054731	42.297	357	193	4	519	875	389	732	2.29e-70	247
Msa1360200	MtrunA17_Chr4g0054731	43.624	149	62	2	118	245	77	224	5.30e-30	127
Msa1360200	MtrunA17_Chr4g0064071	40.667	150	52	1	519	668	126	238	1.00e-20	92.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1360200	AT4G03000.1	37.320	903	435	20	5	879	14	813	7.08e-156	478
Msa1360200	AT4G03000.2	37.320	903	435	20	5	879	14	813	7.08e-156	478
Msa1360200	AT1G03365.1	37.614	880	454	20	15	880	24	822	2.83e-145	450
Msa1360200	AT1G03365.2	37.614	880	454	20	15	880	24	822	2.83e-145	450
Msa1360200	AT4G03000.4	34.716	723	345	19	5	699	14	637	5.92e-94	310
Msa1360200	AT4G03000.6	34.716	723	345	19	5	699	14	637	5.92e-94	310
Msa1360200	AT4G03000.3	34.716	723	345	19	5	699	14	637	2.22e-93	309
Msa1360200	AT4G03000.5	34.716	723	345	19	5	699	14	637	4.14e-93	309
Msa1360200	AT2G35330.2	41.341	358	192	5	522	875	363	706	5.62e-73	254
Msa1360200	AT2G35330.2	43.038	158	76	4	118	264	71	225	2.72e-28	122

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Find 199 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAGAGAACAAATTG+AGG	0.556625	tig0016951:-9499	Msa1360200:CDS
AAAATGCGGGATTGTTAGAA+AGG	0.503581	tig0016951:-11170	Msa1360200:CDS
AAAGCAAGCCGAAGTGCAAG+CGG	0.595548	tig0016951:-10123	Msa1360200:CDS
AAATAGTATCACTAGAATCC+AGG	0.544420	tig0016951:+10861	Msa1360200:intergenic
AAATATCACAGGCTAAACGG+CGG	0.736276	tig0016951:-9572	Msa1360200:intron
AACAGAAGAACTTCTCTCCA+TGG	0.554042	tig0016951:-9535	Msa1360200:CDS
AACCAGTTCTGAAATAGACG+CGG	0.688246	tig0016951:+9260	Msa1360200:intergenic
AACGAGCTAATACTGCAGTA+CGG	0.665440	tig0016951:-10352	Msa1360200:CDS
AACGCACAGAAATTCGCTCC+TGG	0.525525	tig0016951:+9052	Msa1360200:intergenic
AACTTCAAGAATGGACAGAG+TGG	0.640249	tig0016951:-10559	Msa1360200:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGATCGATCTTAGAACAT+CGG	+	tig0016951:9031-9050	Msa1360200:intergenic	30.0%
TGGCAAAATGAAAATCAACA+AGG	+	tig0016951:9540-9559	Msa1360200:intergenic	30.0%
CAAGTACTATCAAAACGTAA+TGG	+	tig0016951:9560-9579	Msa1360200:intergenic	30.0%
TAACAGTCAAATGTCTTCTT+CGG	-	tig0016951:10097-10116	Msa1360200:intron	30.0%
GAAAAAAGTTATCGGACATA+CGG	-	tig0016951:11169-11188	Msa1360200:CDS	30.0%
AAAAAAGTTATCGGACATAC+GGG	-	tig0016951:11170-11189	Msa1360200:CDS	30.0%
TGCTTCTATAAACATAAGCA+AGG	-	tig0016951:11297-11316	Msa1360200:CDS	30.0%
ACCCATTTCTCATCTAATAA+TGG	-	tig0016951:11355-11374	Msa1360200:CDS	30.0%
GTCCATTATTAGATGAGAAA+TGG	+	tig0016951:11360-11379	Msa1360200:intergenic	30.0%
AAATAGTATCACTAGAATCC+AGG	+	tig0016951:11402-11421	Msa1360200:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0016951	gene	8896	13386	8896	ID=Msa1360200;Name=Msa1360200
tig0016951	mRNA	8896	13386	8896	ID=Msa1360200-mRNA-1;Parent=Msa1360200;Name=Msa1360200-mRNA-1;_AED=0.07;_eAED=0.07;_QI=230\|1\|1\|1\|0.33\|0.25\|4\|142\|880
tig0016951	exon	8896	9583	8896	ID=Msa1360200-mRNA-1:exon:11805;Parent=Msa1360200-mRNA-1
tig0016951	exon	10112	12212	10112	ID=Msa1360200-mRNA-1:exon:11804;Parent=Msa1360200-mRNA-1
tig0016951	exon	12883	12921	12883	ID=Msa1360200-mRNA-1:exon:11803;Parent=Msa1360200-mRNA-1
tig0016951	exon	13200	13386	13200	ID=Msa1360200-mRNA-1:exon:11802;Parent=Msa1360200-mRNA-1
tig0016951	five_prime_UTR	13200	13386	13200	ID=Msa1360200-mRNA-1:five_prime_utr;Parent=Msa1360200-mRNA-1
tig0016951	five_prime_UTR	12883	12921	12883	ID=Msa1360200-mRNA-1:five_prime_utr;Parent=Msa1360200-mRNA-1
tig0016951	five_prime_UTR	12209	12212	12209	ID=Msa1360200-mRNA-1:five_prime_utr;Parent=Msa1360200-mRNA-1
tig0016951	CDS	10112	12208	10112	ID=Msa1360200-mRNA-1:cds;Parent=Msa1360200-mRNA-1
tig0016951	CDS	9038	9583	9038	ID=Msa1360200-mRNA-1:cds;Parent=Msa1360200-mRNA-1
tig0016951	three_prime_UTR	8896	9037	8896	ID=Msa1360200-mRNA-1:three_prime_utr;Parent=Msa1360200-mRNA-1

Gene Sequence

>Msa1360200

ATGGCATCACTGGTTGTCAGTGGTAACAGTCAAATGTCTTCTTCGGTTTCTGTTCAAGAAAAAGGAAGTAGAAATAAGAGAAAATTCAGGGCTGATCCACCTTTAGGGGAGTCAAGTAAGAGTATATCTTCACTTCAACATGAGAGCCTAAGTTATGAATTCTCTGCTGAAAAAGTCGAAATTACCCCATGTTTTGGGCAAGTCACAGCTTCTGACTTGTGCACTGTTAGCCACGGTTGTTCTGATGGCTTGAAGCTCGACCTTGGATTATCTAGCCCTGCAGTTTCATCTGAGGTCAGGCTTAGCCAGCCTAAGGAGGAATTAGAAGTGGTTGAGTCCCATGGCGCTGATTGGAGTGATCACACAGAAACTCAGTTGCAAGAACTTGTCTTGAGCAATTTGCAAACCATTTTCAAGAGTGCAATAAAAAAAATTGTTGCTTGTGGCTACACTGAAGATGTTGCTACAAAGGCTATGTTAAGACCTGGCATCTGTTATGGATGCAAAGACACTGTGTCTAATATAGTTGACAACACTTTAGCTCTTTTGAGAAACGGTCAAGAGTTTGATCCTTCACGAGAGCACTATTTTAAAGATTTAGCCGAGCTTCAGAATTACATCTTGGCCGAATTGGTTTGCGTTCTTCAAGAGGTTAGGCCATTTTTCAGTTTCGGAGATGCAATGTGGTGTTTGTTAATCAGTGACATGAACGTGTCACATGCTTGTGCAATGGATGGTGACCCTTTAAGTAGTTTATGCAGCGATGGCATTGGTGATGGCTCTTCTTCTGTCCAGACTGAATCACAATCAAAAGCTGAAATAAAAAGTTCGGAATTGAGTCTTCCAAGTCCTTGTAATTCAATTCCCCCAGGCACTCAATCTGAGAAATCCGTTGTGGCAGAAAATTCTCAAATTCGCGGTGGACTCTTGGAAAAACAGAGTGCTAATTCTGGATGTCATTCTGTTGACAAGTCATCTAATGCTTCCGGAACCTCTCAATCTCCCCTGCTTCAAGAAAAATGCGGGATTGTTAGAAAGGTCCATTCGAGTAGCACCAAGAGGGAGTACATTTTTCGTCAGAAGTCAATCCACGTGGAAAAAAGTTATCGGACATACGGGTCTAAAGGGTCTTCAAGAGGAGGAAAGCTGAGTGGTTTGAGTGGTTTAATCCTGGATAAAAAACTTAAATCAGTATCTGAATCTACTGCCATAAACTTAAAGAGTGCTTCTATAAACATAAGCAAGGCAGTGGGAATTGATGTCACTCAAAACAATCATAACACCCATTTCTCATCTAATAATGGACCATCTACCCCAACATTTAGCCTGGATTCTAGTGATACTATTTCTCGTGCAGCTGATTCTTCATCTTCAGAACATGAAGCAAATCCTATACCAGCAGTCAGTAGTCCCCCAGATGCATTATCAGCTACAGACACTGACCTTTCTCTTTCATTGTCTTCAAAAGGCAATTCTTCTATAGCCCCTATCTGCTGTAATAACAAGTCACATAGTAGTAGTTGTGTGGGGATACCATATGACAAGTCCATGAGACAATGGTTGCCCCAAGATAGAAAAGATGAGTTGATTCTGAAGATGGTTCCGAGGGTTCGGGAGCTGCAAAATGAACTTCAAGAATGGACAGAGTGGGCAAATCAAAAGGTGATGCAGGCTGCTCGTCGACTGAGTAAGGACAAGGCTGAGCTTAAGACACTAAGGCAAGAGAAAGAAGAAGTTGAACGACTTAAAAAGGAGAAACAATGCCTTGAAGAAAACACCATGAAAAAGCTTTCTGAGATGGAAAATGCCTTGGGTAAAGCAGGTGGACAAGTGGAACGAGCTAATACTGCAGTACGGAAGCTCGAGATGGAGAATGCTGCATTGAGGAAAGAGATGGAGGCTGCTAAGTTACGTGCGGAAGAATCAGCAACAAACTTTCAAGAGGTCTCTAAGAGAGAAAAGAAGACCCAAATGAAGTTTCAATCATGGGAGAATCAGAAATCGTTGTTACAGGAAGAGCTAATGACTGAAAAAAACAAATTGGCACAGATATCGAAGGAATCAAAGCAAGCCGAAGTGCAAGCGGAGCAATTCGAGGCTAAACGGCGGCAGGCAGCAAAGAAAACAGAAGAACTTCTCTCCATGGTCAGTTCTATACGAAAAGAAAGAGAACAAATTGAGGAGTCGGCTAGAACCAAGGAGGAGAGGATCAAATTGGAAGCGGAGAAGGAGCTGCGAAGATACAAAGACGACATCCAGAAACTTGAAAAAGAAATTGCACAAATAAGACAGAAGTCCGACTCTTCAAAAATTGCTGCACTAAAAAGAGGAATCGATGGAAGCTATGCCGGTAGCTTCAAGGACACGAAAAAGGGTTCTGGTTTTGAAGAACCCCACACCGCGTCTATTTCAGAACTGGTTCAAAAGTTAAATAACTTCTCTATGAACGGAGGAGGTGTGAAACGGGAAAGGGAGTGTGTGATGTGCCTTTCGGAAGAGATGTCTGTTGTATTTCTTCCATGTGCACATCAAGTTGTTTGCACAAAGTGCAATGAGCTCCATGAGAAGCAGGGAATGCAAGATTGTCCTTCTTGCAGGAGCCCCATCCAGGAGCGAATTTCTGTGCGTTATGCGCGTACATAA

Protein sequence

>Msa1360200

MASLVVSGNSQMSSSVSVQEKGSRNKRKFRADPPLGESSKSISSLQHESLSYEFSAEKVEITPCFGQVTASDLCTVSHGCSDGLKLDLGLSSPAVSSEVRLSQPKEELEVVESHGADWSDHTETQLQELVLSNLQTIFKSAIKKIVACGYTEDVATKAMLRPGICYGCKDTVSNIVDNTLALLRNGQEFDPSREHYFKDLAELQNYILAELVCVLQEVRPFFSFGDAMWCLLISDMNVSHACAMDGDPLSSLCSDGIGDGSSSVQTESQSKAEIKSSELSLPSPCNSIPPGTQSEKSVVAENSQIRGGLLEKQSANSGCHSVDKSSNASGTSQSPLLQEKCGIVRKVHSSSTKREYIFRQKSIHVEKSYRTYGSKGSSRGGKLSGLSGLILDKKLKSVSESTAINLKSASINISKAVGIDVTQNNHNTHFSSNNGPSTPTFSLDSSDTISRAADSSSSEHEANPIPAVSSPPDALSATDTDLSLSLSSKGNSSIAPICCNNKSHSSSCVGIPYDKSMRQWLPQDRKDELILKMVPRVRELQNELQEWTEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKKEKQCLEENTMKKLSEMENALGKAGGQVERANTAVRKLEMENAALRKEMEAAKLRAEESATNFQEVSKREKKTQMKFQSWENQKSLLQEELMTEKNKLAQISKESKQAEVQAEQFEAKRRQAAKKTEELLSMVSSIRKEREQIEESARTKEERIKLEAEKELRRYKDDIQKLEKEIAQIRQKSDSSKIAALKRGIDGSYAGSFKDTKKGSGFEEPHTASISELVQKLNNFSMNGGGVKRERECVMCLSEEMSVVFLPCAHQVVCTKCNELHEKQGMQDCPSCRSPIQERISVRYART*