Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1360200 | XP_003594059.2 | 98.295 | 880 | 15 | 0 | 1 | 880 | 1 | 880 | 0.0 | 1767 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1360200 | sp|Q0WPJ7|RF298_ARATH | 37.320 | 903 | 435 | 20 | 5 | 879 | 14 | 813 | 6.96e-155 | 478 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1360200 | G7IFN5 | 98.295 | 880 | 15 | 0 | 1 | 880 | 1 | 880 | 0.0 | 1767 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005270 | Msa1360200 | 0.805576 | 1.248685e-49 | -8.615850e-47 |
| Msa0037120 | Msa1360200 | 0.809025 | 2.320285e-50 | -8.615850e-47 |
| Msa0059890 | Msa1360200 | 0.822177 | 2.724059e-53 | -8.615850e-47 |
| Msa0076700 | Msa1360200 | 0.809239 | 2.087717e-50 | -8.615850e-47 |
| Msa0077180 | Msa1360200 | 0.814137 | 1.795640e-51 | -8.615850e-47 |
| Msa0077450 | Msa1360200 | 0.821765 | 3.391936e-53 | -8.615850e-47 |
| Msa0083090 | Msa1360200 | 0.812346 | 4.440398e-51 | -8.615850e-47 |
| Msa0084340 | Msa1360200 | 0.814995 | 1.159856e-51 | -8.615850e-47 |
| Msa0085370 | Msa1360200 | 0.804603 | 1.995799e-49 | -8.615850e-47 |
| Msa0092440 | Msa1360200 | 0.842871 | 1.983794e-58 | -8.615850e-47 |
| Msa1349450 | Msa1360200 | 0.801688 | 8.001303e-49 | -8.615850e-47 |
| Msa1360200 | Msa1366300 | 0.831458 | 1.650240e-55 | -8.615850e-47 |
| Msa1360200 | Msa1379850 | 0.801093 | 1.059513e-48 | -8.615850e-47 |
| Msa1360200 | Msa1400070 | 0.821774 | 3.376044e-53 | -8.615850e-47 |
| Msa1360200 | Msa1401460 | 0.808746 | 2.661247e-50 | -8.615850e-47 |
| Msa1360200 | Msa1420250 | 0.816745 | 4.719404e-52 | -8.615850e-47 |
| Msa1360200 | Msa1426910 | 0.802017 | 6.848306e-49 | -8.615850e-47 |
| Msa1360200 | Msa1433220 | 0.846766 | 1.767569e-59 | -8.615850e-47 |
| Msa1360200 | Msa1445220 | 0.822268 | 2.594250e-53 | -8.615850e-47 |
| Msa1360200 | Msa1458030 | 0.803822 | 2.901800e-49 | -8.615850e-47 |
| Msa0621600 | Msa1360200 | 0.800061 | 1.719495e-48 | -8.615850e-47 |
| Msa0621650 | Msa1360200 | 0.884170 | 2.409516e-71 | -8.615850e-47 |
| Msa0661320 | Msa1360200 | 0.800055 | 1.724570e-48 | -8.615850e-47 |
| Msa0689760 | Msa1360200 | 0.816767 | 4.667510e-52 | -8.615850e-47 |
| Msa0698440 | Msa1360200 | 0.843405 | 1.429539e-58 | -8.615850e-47 |
| Msa0716860 | Msa1360200 | 0.805705 | 1.173427e-49 | -8.615850e-47 |
| Msa0741160 | Msa1360200 | 0.821663 | 3.581296e-53 | -8.615850e-47 |
| Msa0763890 | Msa1360200 | 0.812207 | 4.760609e-51 | -8.615850e-47 |
| Msa0763920 | Msa1360200 | 0.814304 | 1.649019e-51 | -8.615850e-47 |
| Msa0773310 | Msa1360200 | 0.805936 | 1.049481e-49 | -8.615850e-47 |
| Msa0773590 | Msa1360200 | 0.803587 | 3.246338e-49 | -8.615850e-47 |
| Msa0780280 | Msa1360200 | 0.853393 | 2.461850e-61 | -8.615850e-47 |
| Msa0789560 | Msa1360200 | 0.811925 | 5.486236e-51 | -8.615850e-47 |
| Msa0820890 | Msa1360200 | 0.800172 | 1.632249e-48 | -8.615850e-47 |
| Msa0821800 | Msa1360200 | 0.843209 | 1.612924e-58 | -8.615850e-47 |
| Msa0138210 | Msa1360200 | 0.863542 | 2.311864e-64 | -8.615850e-47 |
| Msa0143850 | Msa1360200 | 0.820360 | 7.147957e-53 | -8.615850e-47 |
| Msa0170140 | Msa1360200 | 0.807331 | 5.326223e-50 | -8.615850e-47 |
| Msa0174360 | Msa1360200 | 0.801023 | 1.094630e-48 | -8.615850e-47 |
| Msa0177170 | Msa1360200 | 0.805209 | 1.491083e-49 | -8.615850e-47 |
| Msa0183420 | Msa1360200 | 0.823161 | 1.607692e-53 | -8.615850e-47 |
| Msa0189110 | Msa1360200 | 0.803028 | 4.237324e-49 | -8.615850e-47 |
| Msa0193540 | Msa1360200 | 0.812445 | 4.223652e-51 | -8.615850e-47 |
| Msa0195710 | Msa1360200 | 0.998838 | 1.541269e-278 | -8.615850e-47 |
| Msa0200560 | Msa1360200 | 0.826015 | 3.420665e-54 | -8.615850e-47 |
| Msa0202730 | Msa1360200 | 0.818638 | 1.765362e-52 | -8.615850e-47 |
| Msa0231240 | Msa1360200 | 0.819048 | 1.425297e-52 | -8.615850e-47 |
| Msa0236770 | Msa1360200 | 0.814463 | 1.521053e-51 | -8.615850e-47 |
| Msa0237470 | Msa1360200 | 0.959069 | 4.887694e-117 | -8.615850e-47 |
| Msa1288450 | Msa1360200 | 0.836439 | 9.350161e-57 | -8.615850e-47 |
| Msa1299330 | Msa1360200 | 0.804139 | 2.492797e-49 | -8.615850e-47 |
| Msa1333730 | Msa1360200 | 0.811854 | 5.685908e-51 | -8.615850e-47 |
| Msa1338250 | Msa1360200 | 0.801998 | 6.910965e-49 | -8.615850e-47 |
| Msa1341490 | Msa1360200 | 0.808842 | 2.538748e-50 | -8.615850e-47 |
| Msa0377440 | Msa1360200 | 0.812587 | 3.934173e-51 | -8.615850e-47 |
| Msa0381000 | Msa1360200 | 0.806207 | 9.199908e-50 | -8.615850e-47 |
| Msa0381080 | Msa1360200 | 0.806614 | 7.551130e-50 | -8.615850e-47 |
| Msa0390960 | Msa1360200 | 0.827996 | 1.148965e-54 | -8.615850e-47 |
| Msa0403490 | Msa1360200 | 0.810414 | 1.166517e-50 | -8.615850e-47 |
| Msa0411410 | Msa1360200 | 0.801425 | 9.058475e-49 | -8.615850e-47 |
| Msa0417650 | Msa1360200 | 0.851320 | 9.582701e-61 | -8.615850e-47 |
| Msa0417730 | Msa1360200 | 0.837763 | 4.289934e-57 | -8.615850e-47 |
| Msa0423840 | Msa1360200 | 0.814830 | 1.261811e-51 | -8.615850e-47 |
| Msa0430870 | Msa1360200 | 0.809738 | 1.631537e-50 | -8.615850e-47 |
| Msa0473980 | Msa1360200 | 0.807932 | 3.970508e-50 | -8.615850e-47 |
| Msa0981310 | Msa1360200 | 0.827708 | 1.347908e-54 | -8.615850e-47 |
| Msa1026640 | Msa1360200 | 0.802564 | 5.285053e-49 | -8.615850e-47 |
| Msa1077070 | Msa1360200 | 0.812990 | 3.210780e-51 | -8.615850e-47 |
| Msa1096550 | Msa1360200 | 0.808759 | 2.644801e-50 | -8.615850e-47 |
| Msa1098270 | Msa1360200 | 0.800182 | 1.624829e-48 | -8.615850e-47 |
| Msa0243250 | Msa1360200 | 0.810551 | 1.089543e-50 | -8.615850e-47 |
| Msa0269520 | Msa1360200 | 0.833462 | 5.259953e-56 | -8.615850e-47 |
| Msa0274630 | Msa1360200 | 0.804215 | 2.404139e-49 | -8.615850e-47 |
| Msa0280150 | Msa1360200 | 0.821889 | 3.176021e-53 | -8.615850e-47 |
| Msa0281640 | Msa1360200 | 0.808215 | 3.455522e-50 | -8.615850e-47 |
| Msa0305330 | Msa1360200 | 0.807813 | 4.208251e-50 | -8.615850e-47 |
| Msa0308560 | Msa1360200 | 0.809571 | 1.771429e-50 | -8.615850e-47 |
| Msa0314060 | Msa1360200 | 0.815541 | 8.768380e-52 | -8.615850e-47 |
| Msa0320800 | Msa1360200 | 0.815065 | 1.118797e-51 | -8.615850e-47 |
| Msa0323370 | Msa1360200 | 0.817014 | 4.108432e-52 | -8.615850e-47 |
| Msa0347950 | Msa1360200 | 0.828185 | 1.034687e-54 | -8.615850e-47 |
| Msa0347990 | Msa1360200 | 0.829627 | 4.630914e-55 | -8.615850e-47 |
| Msa0348530 | Msa1360200 | 0.802720 | 4.906393e-49 | -8.615850e-47 |
| Msa1109820 | Msa1360200 | 0.822832 | 1.917954e-53 | -8.615850e-47 |
| Msa1122780 | Msa1360200 | 0.811724 | 6.067832e-51 | -8.615850e-47 |
| Msa1130530 | Msa1360200 | 0.803926 | 2.760255e-49 | -8.615850e-47 |
| Msa1133570 | Msa1360200 | 0.829777 | 4.257869e-55 | -8.615850e-47 |
| Msa1138280 | Msa1360200 | 0.800129 | 1.665411e-48 | -8.615850e-47 |
| Msa1209190 | Msa1360200 | 0.803778 | 2.963616e-49 | -8.615850e-47 |
| Msa0500590 | Msa1360200 | 0.800435 | 1.443054e-48 | -8.615850e-47 |
| Msa0517650 | Msa1360200 | 0.804782 | 1.831403e-49 | -8.615850e-47 |
| Msa0573040 | Msa1360200 | 0.832036 | 1.188401e-55 | -8.615850e-47 |
| Msa0861830 | Msa1360200 | 0.843273 | 1.550548e-58 | -8.615850e-47 |
| Msa0873860 | Msa1360200 | 0.800838 | 1.194231e-48 | -8.615850e-47 |
| Msa0900620 | Msa1360200 | 0.810119 | 1.350377e-50 | -8.615850e-47 |
| Msa0902710 | Msa1360200 | 0.809080 | 2.257744e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1360200 | MtrunA17_Chr2g0286891 | 98.295 | 880 | 15 | 0 | 1 | 880 | 1 | 880 | 0.0 | 1767 |
| Msa1360200 | MtrunA17_Chr1g0196471 | 33.938 | 772 | 381 | 19 | 117 | 877 | 75 | 728 | 2.57e-110 | 355 |
| Msa1360200 | MtrunA17_Chr4g0054731 | 42.297 | 357 | 193 | 4 | 519 | 875 | 389 | 732 | 2.29e-70 | 247 |
| Msa1360200 | MtrunA17_Chr4g0054731 | 43.624 | 149 | 62 | 2 | 118 | 245 | 77 | 224 | 5.30e-30 | 127 |
| Msa1360200 | MtrunA17_Chr4g0064071 | 40.667 | 150 | 52 | 1 | 519 | 668 | 126 | 238 | 1.00e-20 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1360200 | AT4G03000.1 | 37.320 | 903 | 435 | 20 | 5 | 879 | 14 | 813 | 7.08e-156 | 478 |
| Msa1360200 | AT4G03000.2 | 37.320 | 903 | 435 | 20 | 5 | 879 | 14 | 813 | 7.08e-156 | 478 |
| Msa1360200 | AT1G03365.1 | 37.614 | 880 | 454 | 20 | 15 | 880 | 24 | 822 | 2.83e-145 | 450 |
| Msa1360200 | AT1G03365.2 | 37.614 | 880 | 454 | 20 | 15 | 880 | 24 | 822 | 2.83e-145 | 450 |
| Msa1360200 | AT4G03000.4 | 34.716 | 723 | 345 | 19 | 5 | 699 | 14 | 637 | 5.92e-94 | 310 |
| Msa1360200 | AT4G03000.6 | 34.716 | 723 | 345 | 19 | 5 | 699 | 14 | 637 | 5.92e-94 | 310 |
| Msa1360200 | AT4G03000.3 | 34.716 | 723 | 345 | 19 | 5 | 699 | 14 | 637 | 2.22e-93 | 309 |
| Msa1360200 | AT4G03000.5 | 34.716 | 723 | 345 | 19 | 5 | 699 | 14 | 637 | 4.14e-93 | 309 |
| Msa1360200 | AT2G35330.2 | 41.341 | 358 | 192 | 5 | 522 | 875 | 363 | 706 | 5.62e-73 | 254 |
| Msa1360200 | AT2G35330.2 | 43.038 | 158 | 76 | 4 | 118 | 264 | 71 | 225 | 2.72e-28 | 122 |
| Msa1360200 | AT2G35330.1 | 41.341 | 358 | 192 | 5 | 522 | 875 | 390 | 733 | 6.35e-73 | 254 |
| Msa1360200 | AT2G35330.1 | 43.038 | 158 | 76 | 4 | 118 | 264 | 98 | 252 | 3.87e-28 | 122 |
| Msa1360200 | AT1G32530.1 | 36.798 | 356 | 207 | 5 | 524 | 875 | 365 | 706 | 1.53e-50 | 190 |
| Msa1360200 | AT1G32530.1 | 39.259 | 135 | 75 | 1 | 118 | 245 | 69 | 203 | 1.45e-23 | 107 |
Find 199 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGCACTCTTTAAGTTTA+TGG | 0.104247 | tig0016951:+10979 | None:intergenic |
| TATATTCCCAATTGCTTATA+AGG | 0.172965 | tig0016951:-13370 | None:intergenic |
| GTCGAAATTACCCCATGTTT+TGG | 0.242112 | tig0016951:-12012 | Msa1360200:CDS |
| TTGATTTGTTTGCAGCTAAA+TGG | 0.242428 | tig0016951:-12205 | Msa1360200:intron |
| TCGCTGCATAAACTACTTAA+AGG | 0.246936 | tig0016951:+11445 | Msa1360200:intergenic |
| GATCTGAATGCATTATTCTA+TGG | 0.247944 | tig0016951:+8960 | Msa1360200:intergenic |
| CCCATGATTGAAACTTCATT+TGG | 0.283994 | tig0016951:+10219 | Msa1360200:intergenic |
| AGAAGTTGAACGACTTAAAA+AGG | 0.284434 | tig0016951:-10456 | Msa1360200:CDS |
| TAGCTTCAAGGACACGAAAA+AGG | 0.285731 | tig0016951:-9307 | Msa1360200:CDS |
| TCGGTTTCTGTTCAAGAAAA+AGG | 0.294425 | tig0016951:-12144 | Msa1360200:CDS |
| TGCAAGATTGTCCTTCTTGC+AGG | 0.326643 | tig0016951:-9083 | Msa1360200:CDS |
| TTCAGGGCTGATCCACCTTT+AGG | 0.327941 | tig0016951:-12102 | Msa1360200:CDS |
| TTAATAGCCTTATAAGCAAT+TGG | 0.329372 | tig0016951:+13363 | Msa1360200:intergenic |
| TGAAGATGGTTCCGAGGGTT+CGG | 0.332368 | tig0016951:-10595 | Msa1360200:CDS |
| CAGGGGAGATTGAGAGGTTC+CGG | 0.337931 | tig0016951:+11201 | Msa1360200:intergenic |
| CAATTTGATCCTCTCCTCCT+TGG | 0.339110 | tig0016951:+9464 | Msa1360200:intergenic |
| AGAATAATGCATTCAGATCT+TGG | 0.340113 | tig0016951:-8956 | Msa1360200:three_prime_UTR |
| GTCCATTATTAGATGAGAAA+TGG | 0.349080 | tig0016951:+10903 | Msa1360200:intergenic |
| TTGTGCTATGTGTTGAGCTT+GGG | 0.352708 | tig0016951:+13334 | Msa1360200:intergenic |
| ACCCATTTCTCATCTAATAA+TGG | 0.356305 | tig0016951:-10905 | Msa1360200:CDS |
| CCATGATTGAAACTTCATTT+GGG | 0.356844 | tig0016951:+10220 | Msa1360200:intergenic |
| TCAGGGCTGATCCACCTTTA+GGG | 0.358652 | tig0016951:-12101 | Msa1360200:CDS |
| GTAGAAATAAGAGAAAATTC+AGG | 0.361206 | tig0016951:-12119 | Msa1360200:CDS |
| GAATTACATCTTGGCCGAAT+TGG | 0.379171 | tig0016951:-11575 | Msa1360200:CDS |
| GAATCAGAAATCGTTGTTAC+AGG | 0.382061 | tig0016951:-10195 | Msa1360200:CDS |
| TCAAATTCGCGGTGGACTCT+TGG | 0.382780 | tig0016951:-11278 | Msa1360200:CDS |
| GAAGATGGTTCCGAGGGTTC+GGG | 0.388461 | tig0016951:-10594 | Msa1360200:CDS |
| CTTGCATTCCCTGCTTCTCA+TGG | 0.393218 | tig0016951:+9100 | Msa1360200:intergenic |
| TCTCTTTCATTGTCTTCAAA+AGG | 0.400450 | tig0016951:-10740 | Msa1360200:CDS |
| CAAGGAGGAGAGGATCAAAT+TGG | 0.404486 | tig0016951:-9463 | Msa1360200:CDS |
| GACAAGTCATCTAATGCTTC+CGG | 0.404497 | tig0016951:-11220 | Msa1360200:CDS |
| TCTGTAGCTGATAATGCATC+TGG | 0.405226 | tig0016951:+10773 | Msa1360200:intergenic |
| GATTTCTCAGATTGAGTGCC+TGG | 0.408635 | tig0016951:+11319 | Msa1360200:intergenic |
| TAGAATCCAGGCTAAATGTT+GGG | 0.410933 | tig0016951:+10873 | Msa1360200:intergenic |
| TTAAGACCTGGCATCTGTTA+TGG | 0.412665 | tig0016951:-11709 | Msa1360200:CDS |
| AGGCTAAATGTTGGGGTAGA+TGG | 0.414356 | tig0016951:+10881 | Msa1360200:intergenic |
| TTCTGAGATGGAAAATGCCT+TGG | 0.415309 | tig0016951:-10396 | Msa1360200:CDS |
| ATTGTATTACTGAGATTTAG+AGG | 0.418899 | tig0016951:-12882 | Msa1360200:intron |
| GGACTACTGACTGCTGGTAT+AGG | 0.422320 | tig0016951:+10797 | Msa1360200:intergenic |
| CTGCAGTTTCATCTGAGGTC+AGG | 0.425266 | tig0016951:-11909 | Msa1360200:CDS |
| TTTGTGCTATGTGTTGAGCT+TGG | 0.430969 | tig0016951:+13333 | Msa1360200:intergenic |
| CAGCAGAGAATTCATAACTT+AGG | 0.431980 | tig0016951:+12040 | Msa1360200:intergenic |
| TTCTTGCAGGAGCCCCATCC+AGG | 0.433423 | tig0016951:-9070 | Msa1360200:CDS |
| TAACAGTCAAATGTCTTCTT+CGG | 0.438296 | tig0016951:-12163 | Msa1360200:CDS |
| TAATAGCCTTATAAGCAATT+GGG | 0.440927 | tig0016951:+13364 | Msa1360200:intergenic |
| AGATGAGTTGATTCTGAAGA+TGG | 0.442092 | tig0016951:-10609 | Msa1360200:CDS |
| CCCAAATGAAGTTTCAATCA+TGG | 0.443366 | tig0016951:-10220 | Msa1360200:CDS |
| AAGCTATGCCGGTAGCTTCA+AGG | 0.448095 | tig0016951:-9319 | Msa1360200:CDS |
| ATGCATTCAGATCTTGGATC+TGG | 0.448154 | tig0016951:-8950 | Msa1360200:three_prime_UTR |
| CGCTGCATAAACTACTTAAA+GGG | 0.448414 | tig0016951:+11446 | Msa1360200:intergenic |
| TATAAACATAAGCAAGGCAG+TGG | 0.448971 | tig0016951:-10957 | Msa1360200:CDS |
| ACAGAAATTCGCTCCTGGAT+GGG | 0.450372 | tig0016951:+9057 | Msa1360200:intergenic |
| TGTCTCATGGACTTGTCATA+TGG | 0.455279 | tig0016951:+10653 | Msa1360200:intergenic |
| TTGAAGACAATGAAAGAGAA+AGG | 0.455334 | tig0016951:+10744 | Msa1360200:intergenic |
| CAGAAATTCGCTCCTGGATG+GGG | 0.459004 | tig0016951:+9058 | Msa1360200:intergenic |
| CGAGCTTCAGAATTACATCT+TGG | 0.459109 | tig0016951:-11584 | Msa1360200:CDS |
| CACCGCGTCTATTTCAGAAC+TGG | 0.460689 | tig0016951:-9262 | Msa1360200:CDS |
| GGCTGCTCGTCGACTGAGTA+AGG | 0.463847 | tig0016951:-10516 | Msa1360200:CDS |
| TTGAAGAACGCAAACCAATT+CGG | 0.464489 | tig0016951:+11561 | Msa1360200:intergenic |
| TTGAGTCCCATGGCGCTGAT+TGG | 0.468361 | tig0016951:-11855 | Msa1360200:CDS |
| ACTTGTTATTACAGCAGATA+GGG | 0.468592 | tig0016951:+10702 | Msa1360200:intergenic |
| TATCGGACATACGGGTCTAA+AGG | 0.468738 | tig0016951:-11082 | Msa1360200:CDS |
| TCCATTATTAGATGAGAAAT+GGG | 0.470325 | tig0016951:+10904 | Msa1360200:intergenic |
| ATCGGACATACGGGTCTAAA+GGG | 0.472374 | tig0016951:-11081 | Msa1360200:CDS |
| CAATGAGCTCCATGAGAAGC+AGG | 0.473165 | tig0016951:-9109 | Msa1360200:CDS |
| ATCTACCCCAACATTTAGCC+TGG | 0.474786 | tig0016951:-10879 | Msa1360200:CDS |
| GATGGCTTGAAGCTCGACCT+TGG | 0.477990 | tig0016951:-11943 | Msa1360200:CDS |
| TTTCGTGTCCTTGAAGCTAC+CGG | 0.478278 | tig0016951:+9311 | Msa1360200:intergenic |
| TGGTTTGAGTGGTTTAATCC+TGG | 0.479762 | tig0016951:-11035 | Msa1360200:CDS |
| CCCTCTTGGTGCTACTCGAA+TGG | 0.480575 | tig0016951:+11146 | Msa1360200:intergenic |
| GGAATTGAATTACAAGGACT+TGG | 0.484319 | tig0016951:+11343 | Msa1360200:intergenic |
| GATCAAATTGGAAGCGGAGA+AGG | 0.484375 | tig0016951:-9451 | Msa1360200:CDS |
| GACTTGTTATTACAGCAGAT+AGG | 0.486606 | tig0016951:+10701 | Msa1360200:intergenic |
| TTTGCGTTCTTCAAGAGGTT+AGG | 0.489276 | tig0016951:-11552 | Msa1360200:CDS |
| GTTAGCCACGGTTGTTCTGA+TGG | 0.489726 | tig0016951:-11961 | Msa1360200:CDS |
| TTCTGAAATAGACGCGGTGT+GGG | 0.490115 | tig0016951:+9266 | Msa1360200:intergenic |
| GGCAAATCAAAAGGTGATGC+AGG | 0.491344 | tig0016951:-10537 | Msa1360200:CDS |
| GACAGAGTGGGCAAATCAAA+AGG | 0.495082 | tig0016951:-10546 | Msa1360200:CDS |
| TCTGAGATGGAAAATGCCTT+GGG | 0.495498 | tig0016951:-10395 | Msa1360200:CDS |
| CACAGAAATTCGCTCCTGGA+TGG | 0.502512 | tig0016951:+9056 | Msa1360200:intergenic |
| CTCTTACTTGACTCCCCTAA+AGG | 0.502873 | tig0016951:+12087 | Msa1360200:intergenic |
| AAAATGCGGGATTGTTAGAA+AGG | 0.503581 | tig0016951:-11170 | Msa1360200:CDS |
| TAGAAATAAGAGAAAATTCA+GGG | 0.503963 | tig0016951:-12118 | Msa1360200:CDS |
| TGCAAAATGAACTTCAAGAA+TGG | 0.504403 | tig0016951:-10568 | Msa1360200:CDS |
| ATCACAGGCTAAACGGCGGC+AGG | 0.504970 | tig0016951:-9568 | Msa1360200:intron |
| CAGGGCTGATCCACCTTTAG+GGG | 0.505454 | tig0016951:-12100 | Msa1360200:CDS |
| GAACGGAGGAGGTGTGAAAC+GGG | 0.507987 | tig0016951:-9214 | Msa1360200:CDS |
| ATATATTACTTTCAATGCAA+AGG | 0.510068 | tig0016951:-8913 | Msa1360200:three_prime_UTR |
| ATCTGAATGCATTATTCTAT+GGG | 0.513965 | tig0016951:+8961 | Msa1360200:intergenic |
| CTGACCTCAGATGAAACTGC+AGG | 0.516905 | tig0016951:+11910 | Msa1360200:intergenic |
| ATCACTCCAATCAGCGCCAT+GGG | 0.517228 | tig0016951:+11849 | Msa1360200:intergenic |
| CCAAATGAAGTTTCAATCAT+GGG | 0.518136 | tig0016951:-10219 | Msa1360200:CDS |
| CTTCTAATTCCTCCTTAGGC+TGG | 0.519710 | tig0016951:+11881 | Msa1360200:intergenic |
| GAGGAGGTGTGAAACGGGAA+AGG | 0.521023 | tig0016951:-9209 | Msa1360200:CDS |
| GGAATCGATGGAAGCTATGC+CGG | 0.523339 | tig0016951:-9330 | Msa1360200:CDS |
| GAAAATGCCTTGGGTAAAGC+AGG | 0.524830 | tig0016951:-10386 | Msa1360200:CDS |
| AACGCACAGAAATTCGCTCC+TGG | 0.525525 | tig0016951:+9052 | Msa1360200:intergenic |
| AGGAGGTGTGAAACGGGAAA+GGG | 0.525773 | tig0016951:-9208 | Msa1360200:CDS |
| TTGCAGCTAAATGGCATCAC+TGG | 0.527853 | tig0016951:-12196 | Msa1360200:intron |
| CTGTAGCTGATAATGCATCT+GGG | 0.529420 | tig0016951:+10774 | Msa1360200:intergenic |
| AGTTTATGCAGCGATGGCAT+TGG | 0.532146 | tig0016951:-11436 | Msa1360200:CDS |
| TCACATAGTAGTAGTTGTGT+GGG | 0.533038 | tig0016951:-10680 | Msa1360200:CDS |
| TGAACGGAGGAGGTGTGAAA+CGG | 0.533156 | tig0016951:-9215 | Msa1360200:CDS |
| TGCAGCGATGGCATTGGTGA+TGG | 0.533644 | tig0016951:-11430 | Msa1360200:CDS |
| ATTTCTCAGATTGAGTGCCT+GGG | 0.536057 | tig0016951:+11320 | Msa1360200:intergenic |
| CTAGAATCCAGGCTAAATGT+TGG | 0.536588 | tig0016951:+10872 | Msa1360200:intergenic |
| TTAAATAACTTCTCTATGAA+CGG | 0.538843 | tig0016951:-9231 | Msa1360200:CDS |
| CACTGAAGATGTTGCTACAA+AGG | 0.538959 | tig0016951:-11737 | Msa1360200:CDS |
| GGAAAGCTGAGTGGTTTGAG+TGG | 0.539286 | tig0016951:-11046 | Msa1360200:CDS |
| TTGGGGCAACCATTGTCTCA+TGG | 0.541430 | tig0016951:+10640 | Msa1360200:intergenic |
| AAGAGAACAAATTGAGGAGT+CGG | 0.541615 | tig0016951:-9493 | Msa1360200:CDS |
| TGTGCTATGTGTTGAGCTTG+GGG | 0.543136 | tig0016951:+13335 | Msa1360200:intergenic |
| GCTGTGACTTGCCCAAAACA+TGG | 0.543592 | tig0016951:+12000 | Msa1360200:intergenic |
| AAATAGTATCACTAGAATCC+AGG | 0.544420 | tig0016951:+10861 | Msa1360200:intergenic |
| GGTCAGGCTTAGCCAGCCTA+AGG | 0.548390 | tig0016951:-11893 | Msa1360200:CDS |
| AACAGAAGAACTTCTCTCCA+TGG | 0.554042 | tig0016951:-9535 | Msa1360200:CDS |
| TGAGGAGTCGGCTAGAACCA+AGG | 0.554113 | tig0016951:-9481 | Msa1360200:CDS |
| AAAAGAAAGAGAACAAATTG+AGG | 0.556625 | tig0016951:-9499 | Msa1360200:CDS |
| TTGAAGCAGGGGAGATTGAG+AGG | 0.557801 | tig0016951:+11195 | Msa1360200:intergenic |
| AACTTCTCTATGAACGGAGG+AGG | 0.562509 | tig0016951:-9225 | Msa1360200:CDS |
| ATTGGTTTGCGTTCTTCAAG+AGG | 0.562855 | tig0016951:-11557 | Msa1360200:CDS |
| AGGCTGAGCTTAAGACACTA+AGG | 0.563919 | tig0016951:-10490 | Msa1360200:CDS |
| CTGTGACTTGCCCAAAACAT+GGG | 0.565277 | tig0016951:+12001 | Msa1360200:intergenic |
| AGTGCAAGCGGAGCAATTCG+AGG | 0.565932 | tig0016951:-10111 | Msa1360200:intron |
| TTGCATCCATAACAGATGCC+AGG | 0.570859 | tig0016951:+11703 | Msa1360200:intergenic |
| ACCACTTCTAATTCCTCCTT+AGG | 0.570887 | tig0016951:+11877 | Msa1360200:intergenic |
| GTCACATAGTAGTAGTTGTG+TGG | 0.572984 | tig0016951:-10681 | Msa1360200:CDS |
| GGAGAGGATCAAATTGGAAG+CGG | 0.573756 | tig0016951:-9457 | Msa1360200:CDS |
| CGGCTAGAACCAAGGAGGAG+AGG | 0.575165 | tig0016951:-9473 | Msa1360200:CDS |
| TTAAAATAGTGCTCTCGTGA+AGG | 0.587307 | tig0016951:+11616 | Msa1360200:intergenic |
| GATCACTCCAATCAGCGCCA+TGG | 0.587469 | tig0016951:+11848 | Msa1360200:intergenic |
| TGCAGTACGGAAGCTCGAGA+TGG | 0.587948 | tig0016951:-10339 | Msa1360200:CDS |
| TTAGAAGTGGTTGAGTCCCA+TGG | 0.588976 | tig0016951:-11865 | Msa1360200:CDS |
| CTTGTTATTACAGCAGATAG+GGG | 0.590136 | tig0016951:+10703 | Msa1360200:intergenic |
| TTGTCCACCTGCTTTACCCA+AGG | 0.591973 | tig0016951:+10379 | Msa1360200:intergenic |
| TGGATGGGGCTCCTGCAAGA+AGG | 0.592363 | tig0016951:+9072 | Msa1360200:intergenic |
| TGCTGCATTGAGGAAAGAGA+TGG | 0.592537 | tig0016951:-10312 | Msa1360200:CDS |
| TTAAGTAGTTTATGCAGCGA+TGG | 0.592929 | tig0016951:-11442 | Msa1360200:CDS |
| CAGGCTTAGCCAGCCTAAGG+AGG | 0.593792 | tig0016951:-11890 | Msa1360200:CDS |
| ATCAGCAACAAACTTTCAAG+AGG | 0.595207 | tig0016951:-10264 | Msa1360200:CDS |
| AAAGCAAGCCGAAGTGCAAG+CGG | 0.595548 | tig0016951:-10123 | Msa1360200:CDS |
| GACTTGTGCACTGTTAGCCA+CGG | 0.596382 | tig0016951:-11973 | Msa1360200:CDS |
| GGGTAAAGCAGGTGGACAAG+TGG | 0.599397 | tig0016951:-10375 | Msa1360200:CDS |
| GTTCTGAAATAGACGCGGTG+TGG | 0.599691 | tig0016951:+9265 | Msa1360200:intergenic |
| GGAGTGTGTGATGTGCCTTT+CGG | 0.601614 | tig0016951:-9187 | Msa1360200:CDS |
| CAAGATGTAATTCTGAAGCT+CGG | 0.607013 | tig0016951:+11585 | Msa1360200:intergenic |
| GCAGAAAATTCTCAAATTCG+CGG | 0.611943 | tig0016951:-11289 | Msa1360200:CDS |
| TGATTCTGAAGATGGTTCCG+AGG | 0.613147 | tig0016951:-10601 | Msa1360200:CDS |
| CGTGTCACATGCTTGTGCAA+TGG | 0.613972 | tig0016951:-11476 | Msa1360200:CDS |
| TTTCTCAGATTGAGTGCCTG+GGG | 0.616223 | tig0016951:+11321 | Msa1360200:intergenic |
| GCTATGTGTTGAGCTTGGGG+AGG | 0.616848 | tig0016951:+13338 | Msa1360200:intergenic |
| AGAATCCAGGCTAAATGTTG+GGG | 0.617379 | tig0016951:+10874 | Msa1360200:intergenic |
| CTGCAGGGCTAGATAATCCA+AGG | 0.619620 | tig0016951:+11926 | Msa1360200:intergenic |
| GATTCTGAAGATGGTTCCGA+GGG | 0.620356 | tig0016951:-10600 | Msa1360200:CDS |
| GCCTAAGGAGGAATTAGAAG+TGG | 0.621473 | tig0016951:-11878 | Msa1360200:CDS |
| TAGCCCTGCAGTTTCATCTG+AGG | 0.622105 | tig0016951:-11914 | Msa1360200:CDS |
| TCACATGCTTGTGCAATGGA+TGG | 0.625176 | tig0016951:-11472 | Msa1360200:CDS |
| TGTAGCTGATAATGCATCTG+GGG | 0.627271 | tig0016951:+10775 | Msa1360200:intergenic |
| AGATGGAGAATGCTGCATTG+AGG | 0.628423 | tig0016951:-10322 | Msa1360200:CDS |
| TGCTTCTATAAACATAAGCA+AGG | 0.629751 | tig0016951:-10963 | Msa1360200:CDS |
| TTACTTGACTCCCCTAAAGG+TGG | 0.630430 | tig0016951:+12090 | Msa1360200:intergenic |
| CAAATTGGCACAGATATCGA+AGG | 0.631352 | tig0016951:-10150 | Msa1360200:CDS |
| ATGACAAGTCCATGAGACAA+TGG | 0.637572 | tig0016951:-10649 | Msa1360200:CDS |
| CAAACAACTTGATGTGCACA+TGG | 0.640114 | tig0016951:+9141 | Msa1360200:intergenic |
| AACTTCAAGAATGGACAGAG+TGG | 0.640249 | tig0016951:-10559 | Msa1360200:CDS |
| ATGGCATCACTGGTTGTCAG+TGG | 0.643711 | tig0016951:-12186 | Msa1360200:CDS |
| CCATTCGAGTAGCACCAAGA+GGG | 0.645720 | tig0016951:-11146 | Msa1360200:CDS |
| GGGTCTAAAGGGTCTTCAAG+AGG | 0.646096 | tig0016951:-11070 | Msa1360200:CDS |
| GAATTGCTCCGCTTGCACTT+CGG | 0.649365 | tig0016951:+10115 | Msa1360200:intergenic |
| AATGCCTTGGGTAAAGCAGG+TGG | 0.652750 | tig0016951:-10383 | Msa1360200:CDS |
| TCCATTCGAGTAGCACCAAG+AGG | 0.654219 | tig0016951:-11147 | Msa1360200:CDS |
| ACTTCAAGAATGGACAGAGT+GGG | 0.655947 | tig0016951:-10558 | Msa1360200:CDS |
| ATAAACATAAGCAAGGCAGT+GGG | 0.657479 | tig0016951:-10956 | Msa1360200:CDS |
| TGACCTCAGATGAAACTGCA+GGG | 0.658780 | tig0016951:+11911 | Msa1360200:intergenic |
| TGTGACTTGCCCAAAACATG+GGG | 0.662318 | tig0016951:+12002 | Msa1360200:intergenic |
| TAAGATCGATCTTAGAACAT+CGG | 0.662677 | tig0016951:+13232 | Msa1360200:intergenic |
| TCTAAAGGGTCTTCAAGAGG+AGG | 0.662790 | tig0016951:-11067 | Msa1360200:CDS |
| CAACAGACATCTCTTCCGAA+AGG | 0.663930 | tig0016951:+9172 | Msa1360200:intergenic |
| AACGAGCTAATACTGCAGTA+CGG | 0.665440 | tig0016951:-10352 | Msa1360200:CDS |
| ACAAAGGCTATGTTAAGACC+TGG | 0.665472 | tig0016951:-11721 | Msa1360200:CDS |
| TTCTCAGATTGAGTGCCTGG+GGG | 0.666069 | tig0016951:+11322 | Msa1360200:intergenic |
| TCAGTTTCGGAGATGCAATG+TGG | 0.669957 | tig0016951:-11522 | Msa1360200:CDS |
| TCTGAAATAGACGCGGTGTG+GGG | 0.671611 | tig0016951:+9267 | Msa1360200:intergenic |
| GAAAATTCTCAAATTCGCGG+TGG | 0.674479 | tig0016951:-11286 | Msa1360200:CDS |
| TCAATCTGAGAAATCCGTTG+TGG | 0.679156 | tig0016951:-11311 | Msa1360200:CDS |
| AATGAGCTCCATGAGAAGCA+GGG | 0.679279 | tig0016951:-9108 | Msa1360200:CDS |
| TCGTCGACTGAGTAAGGACA+AGG | 0.681425 | tig0016951:-10510 | Msa1360200:CDS |
| TGCATTGAGGAAAGAGATGG+AGG | 0.682188 | tig0016951:-10309 | Msa1360200:CDS |
| CACATAGTAGTAGTTGTGTG+GGG | 0.682224 | tig0016951:-10679 | Msa1360200:CDS |
| GGAGGCTGCTAAGTTACGTG+CGG | 0.686850 | tig0016951:-10291 | Msa1360200:CDS |
| AACCAGTTCTGAAATAGACG+CGG | 0.688246 | tig0016951:+9260 | Msa1360200:intergenic |
| TCAAGAGGAGGAAAGCTGAG+TGG | 0.691060 | tig0016951:-11055 | Msa1360200:CDS |
| GTAGCTGATAATGCATCTGG+GGG | 0.692281 | tig0016951:+10776 | Msa1360200:intergenic |
| AATAACTTCTCTATGAACGG+AGG | 0.693247 | tig0016951:-9228 | Msa1360200:CDS |
| TCAAGCCATCAGAACAACCG+TGG | 0.719058 | tig0016951:+11956 | Msa1360200:intergenic |
| TCGTCAGAAGTCAATCCACG+TGG | 0.728301 | tig0016951:-11113 | Msa1360200:CDS |
| AAATATCACAGGCTAAACGG+CGG | 0.736276 | tig0016951:-9572 | Msa1360200:intron |
| ATTATTCTATGGGAGTCCCG+AGG | 0.739410 | tig0016951:+8971 | Msa1360200:intergenic |
| GGAGTCGGCTAGAACCAAGG+AGG | 0.754094 | tig0016951:-9478 | Msa1360200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAAAATAAAATAAACAG+AGG | - | tig0016951:8946-8965 | Msa1360200:three_prime_UTR | 15.0% |
| !!! | GAAAAATCAATGTTTTTTTT+AGG | + | tig0016951:8997-9016 | Msa1360200:intergenic | 15.0% |
| !! | TTATGTAATTGAATTCAATT+GGG | - | tig0016951:9221-9240 | Msa1360200:CDS | 15.0% |
| !!! | AGTTTTTAATTTTTTTCAAC+TGG | - | tig0016951:9251-9270 | Msa1360200:CDS | 15.0% |
| !!! | GTTTTTAATTTTTTTCAACT+GGG | - | tig0016951:9252-9271 | Msa1360200:CDS | 15.0% |
| !!! | AAATTTTCATATAACTACTT+AGG | + | tig0016951:12413-12432 | Msa1360200:intergenic | 15.0% |
| !! | GTTATGTAATTGAATTCAAT+TGG | - | tig0016951:9220-9239 | Msa1360200:CDS | 20.0% |
| !!! | TTTTTTAATCTGATTGTTTC+AGG | - | tig0016951:9339-9358 | Msa1360200:CDS | 20.0% |
| !!! | ATAATGCTATCAAATTTGTT+GGG | - | tig0016951:9508-9527 | Msa1360200:CDS | 20.0% |
| !! | TAGAAATAAGAGAAAATTCA+GGG | - | tig0016951:10142-10161 | Msa1360200:CDS | 20.0% |
| !!! | ATAAAAAAAATTGTTGCTTG+TGG | - | tig0016951:10497-10516 | Msa1360200:CDS | 20.0% |
| !! | AAAAGCTGAAATAAAAAGTT+CGG | - | tig0016951:10883-10902 | Msa1360200:CDS | 20.0% |
| !! | AATGACTGAAAAAAACAAAT+TGG | - | tig0016951:12095-12114 | Msa1360200:CDS | 20.0% |
| !! | TAAATGTTGGTATTAATATC+TGG | + | tig0016951:12226-12245 | Msa1360200:intergenic | 20.0% |
| !! | ATATAACTACTTAGGTATAA+AGG | + | tig0016951:12405-12424 | Msa1360200:intergenic | 20.0% |
| !! | TTAAATAACTTCTCTATGAA+CGG | - | tig0016951:13029-13048 | Msa1360200:intron | 20.0% |
| !! | ATATATTACTTTCAATGCAA+AGG | - | tig0016951:13347-13366 | Msa1360200:five_prime_UTR | 20.0% |
| !!! | TAATAGCCTTATAAGCAATT+GGG | + | tig0016951:8899-8918 | None:intergenic | 25.0% |
| !!! | TTAATAGCCTTATAAGCAAT+TGG | + | tig0016951:8900-8919 | None:intergenic | 25.0% |
| !! | GTTTGTCAATTTTCTTCAAT+CGG | - | tig0016951:9060-9079 | Msa1360200:CDS | 25.0% |
| !! | TTTGTCAATTTTCTTCAATC+GGG | - | tig0016951:9061-9080 | Msa1360200:CDS | 25.0% |
| !! | ACTCTGAATTTTTCTTCAAT+TGG | - | tig0016951:9117-9136 | Msa1360200:CDS | 25.0% |
| !! | CTCTGAATTTTTCTTCAATT+GGG | - | tig0016951:9118-9137 | Msa1360200:CDS | 25.0% |
| !! | TCTGAATTTTTCTTCAATTG+GGG | - | tig0016951:9119-9138 | Msa1360200:CDS | 25.0% |
| ! | ATTGTATTACTGAGATTTAG+AGG | - | tig0016951:9378-9397 | Msa1360200:CDS | 25.0% |
| ! | GCATTATCAATCAACAAAAA+GGG | + | tig0016951:9495-9514 | Msa1360200:intergenic | 25.0% |
| ! | AGCATTATCAATCAACAAAA+AGG | + | tig0016951:9496-9515 | Msa1360200:intergenic | 25.0% |
| ! | GATAATGCTATCAAATTTGT+TGG | - | tig0016951:9507-9526 | Msa1360200:CDS | 25.0% |
| ! | TCTTTCAAGCTATGTAAATA+TGG | - | tig0016951:9967-9986 | Msa1360200:intron | 25.0% |
| !!! | AATCACAAGTTGATTAGTTT+CGG | + | tig0016951:9994-10013 | Msa1360200:intergenic | 25.0% |
| ! | GTAGAAATAAGAGAAAATTC+AGG | - | tig0016951:10141-10160 | Msa1360200:CDS | 25.0% |
| !! | TTTTATTGCACTCTTGAAAA+TGG | + | tig0016951:10483-10502 | Msa1360200:intergenic | 25.0% |
| !!! | CTGATTTAAGTTTTTTATCC+AGG | + | tig0016951:11246-11265 | Msa1360200:intergenic | 25.0% |
| ! | TCCATTATTAGATGAGAAAT+GGG | + | tig0016951:11359-11378 | Msa1360200:intergenic | 25.0% |
| ! | GTAATGTTAAATGAATCACT+TGG | - | tig0016951:12565-12584 | Msa1360200:intron | 25.0% |
| ! | TTGTAAAGGAAAAATATCAC+AGG | - | tig0016951:12677-12696 | Msa1360200:intron | 25.0% |
| ! | AAAAGAAAGAGAACAAATTG+AGG | - | tig0016951:12761-12780 | Msa1360200:intron | 25.0% |
| !!! | CAATTTCTTTTTCAAGTTTC+TGG | + | tig0016951:12860-12879 | Msa1360200:intergenic | 25.0% |
| ! | ATCTGAATGCATTATTCTAT+GGG | + | tig0016951:13302-13321 | Msa1360200:intergenic | 25.0% |
| TAAGATCGATCTTAGAACAT+CGG | + | tig0016951:9031-9050 | Msa1360200:intergenic | 30.0% | |
| ! | AGATTACTTGTGCATGTTTT+TGG | - | tig0016951:9287-9306 | Msa1360200:CDS | 30.0% |
| ! | GATTACTTGTGCATGTTTTT+GGG | - | tig0016951:9288-9307 | Msa1360200:CDS | 30.0% |
| TGGCAAAATGAAAATCAACA+AGG | + | tig0016951:9540-9559 | Msa1360200:intergenic | 30.0% | |
| CAAGTACTATCAAAACGTAA+TGG | + | tig0016951:9560-9579 | Msa1360200:intergenic | 30.0% | |
| !! | CATTACGTTTTGATAGTACT+TGG | - | tig0016951:9558-9577 | Msa1360200:CDS | 30.0% |
| !! | GTTTTGATAGTACTTGGTTT+TGG | - | tig0016951:9564-9583 | Msa1360200:CDS | 30.0% |
| !! | ATCACAAGTTGATTAGTTTC+GGG | + | tig0016951:9993-10012 | Msa1360200:intergenic | 30.0% |
| !! | TTGATTTGTTTGCAGCTAAA+TGG | - | tig0016951:10055-10074 | Msa1360200:intron | 30.0% |
| TAACAGTCAAATGTCTTCTT+CGG | - | tig0016951:10097-10116 | Msa1360200:intron | 30.0% | |
| !!! | ACTTTAGCTCTTTTGAGAAA+CGG | - | tig0016951:10608-10627 | Msa1360200:CDS | 30.0% |
| GAAAAAAGTTATCGGACATA+CGG | - | tig0016951:11169-11188 | Msa1360200:CDS | 30.0% | |
| AAAAAAGTTATCGGACATAC+GGG | - | tig0016951:11170-11189 | Msa1360200:CDS | 30.0% | |
| !! | AGAAGCACTCTTTAAGTTTA+TGG | + | tig0016951:11284-11303 | Msa1360200:intergenic | 30.0% |
| TGCTTCTATAAACATAAGCA+AGG | - | tig0016951:11297-11316 | Msa1360200:CDS | 30.0% | |
| ACCCATTTCTCATCTAATAA+TGG | - | tig0016951:11355-11374 | Msa1360200:CDS | 30.0% | |
| GTCCATTATTAGATGAGAAA+TGG | + | tig0016951:11360-11379 | Msa1360200:intergenic | 30.0% | |
| AAATAGTATCACTAGAATCC+AGG | + | tig0016951:11402-11421 | Msa1360200:intergenic | 30.0% | |
| TTGAAGACAATGAAAGAGAA+AGG | + | tig0016951:11519-11538 | Msa1360200:intergenic | 30.0% | |
| TCTCTTTCATTGTCTTCAAA+AGG | - | tig0016951:11520-11539 | Msa1360200:CDS | 30.0% | |
| !! | ACTTGTTATTACAGCAGATA+GGG | + | tig0016951:11561-11580 | Msa1360200:intergenic | 30.0% |
| ! | AACTCATCTTTTCTATCTTG+GGG | + | tig0016951:11640-11659 | Msa1360200:intergenic | 30.0% |
| ! | CAACTCATCTTTTCTATCTT+GGG | + | tig0016951:11641-11660 | Msa1360200:intergenic | 30.0% |
| ! | TCAACTCATCTTTTCTATCT+TGG | + | tig0016951:11642-11661 | Msa1360200:intergenic | 30.0% |
| TGCAAAATGAACTTCAAGAA+TGG | - | tig0016951:11692-11711 | Msa1360200:CDS | 30.0% | |
| AGAAGTTGAACGACTTAAAA+AGG | - | tig0016951:11804-11823 | Msa1360200:CDS | 30.0% | |
| ! | TTTTCATGGTGTTTTCTTCA+AGG | + | tig0016951:11840-11859 | Msa1360200:intergenic | 30.0% |
| CCATGATTGAAACTTCATTT+GGG | + | tig0016951:12043-12062 | Msa1360200:intergenic | 30.0% | |
| CCAAATGAAGTTTCAATCAT+GGG | - | tig0016951:12041-12060 | Msa1360200:CDS | 30.0% | |
| TGAAAACAAATAACAGCATC+AGG | + | tig0016951:12251-12270 | Msa1360200:intergenic | 30.0% | |
| !! | TGCTGTTATTTGTTTTCATG+TGG | - | tig0016951:12253-12272 | Msa1360200:intron | 30.0% |
| TACATGTTGGTATTAATACC+TGG | + | tig0016951:12336-12355 | Msa1360200:intergenic | 30.0% | |
| AACATCATTTCCTTGTTGAA+TGG | - | tig0016951:12538-12557 | Msa1360200:intron | 30.0% | |
| ACATCATTTCCTTGTTGAAT+GGG | - | tig0016951:12539-12558 | Msa1360200:intron | 30.0% | |
| ! | CTTAATGAGTTTGTGTTACT+GGG | - | tig0016951:12644-12663 | Msa1360200:intron | 30.0% |
| GAAAAATATCACAGGCTAAA+CGG | - | tig0016951:12685-12704 | Msa1360200:intron | 30.0% | |
| AAAATTGCTGCACTAAAAAG+AGG | - | tig0016951:12909-12928 | Msa1360200:intron | 30.0% | |
| !! | AGTGTTTTGAATAATGTCCT+CGG | - | tig0016951:13272-13291 | Msa1360200:five_prime_UTR | 30.0% |
| GATCTGAATGCATTATTCTA+TGG | + | tig0016951:13303-13322 | Msa1360200:intergenic | 30.0% | |
| AGAATAATGCATTCAGATCT+TGG | - | tig0016951:13304-13323 | Msa1360200:five_prime_UTR | 30.0% | |
| GTATAGCTGTCTAATGATGA+TGG | + | tig0016951:9878-9897 | Msa1360200:intergenic | 35.0% | |
| TCGGTTTCTGTTCAAGAAAA+AGG | - | tig0016951:10116-10135 | Msa1360200:CDS | 35.0% | |
| CAGCAGAGAATTCATAACTT+AGG | + | tig0016951:10223-10242 | Msa1360200:intergenic | 35.0% | |
| ! | TCGAAATTACCCCATGTTTT+GGG | - | tig0016951:10249-10268 | Msa1360200:CDS | 35.0% |
| TTAAAATAGTGCTCTCGTGA+AGG | + | tig0016951:10647-10666 | Msa1360200:intergenic | 35.0% | |
| !! | CAAGATGTAATTCTGAAGCT+CGG | + | tig0016951:10678-10697 | Msa1360200:intergenic | 35.0% |
| TTGAAGAACGCAAACCAATT+CGG | + | tig0016951:10702-10721 | Msa1360200:intergenic | 35.0% | |
| !!! | GTTAGGCCATTTTTCAGTTT+CGG | - | tig0016951:10725-10744 | Msa1360200:CDS | 35.0% |
| CGCTGCATAAACTACTTAAA+GGG | + | tig0016951:10817-10836 | Msa1360200:intergenic | 35.0% | |
| TCGCTGCATAAACTACTTAA+AGG | + | tig0016951:10818-10837 | Msa1360200:intergenic | 35.0% | |
| TTAAGTAGTTTATGCAGCGA+TGG | - | tig0016951:10818-10837 | Msa1360200:CDS | 35.0% | |
| !! | CTTTTGATTGTGATTCAGTC+TGG | + | tig0016951:10868-10887 | Msa1360200:intergenic | 35.0% |
| GGAATTGAATTACAAGGACT+TGG | + | tig0016951:10920-10939 | Msa1360200:intergenic | 35.0% | |
| ! | TTGAGAATTTTCTGCCACAA+CGG | + | tig0016951:10966-10985 | Msa1360200:intergenic | 35.0% |
| GCAGAAAATTCTCAAATTCG+CGG | - | tig0016951:10971-10990 | Msa1360200:CDS | 35.0% | |
| ! | GAAAAACAGAGTGCTAATTC+TGG | - | tig0016951:11004-11023 | Msa1360200:CDS | 35.0% |
| AAAATGCGGGATTGTTAGAA+AGG | - | tig0016951:11090-11109 | Msa1360200:CDS | 35.0% | |
| TCCACGTGGAAAAAAGTTAT+CGG | - | tig0016951:11161-11180 | Msa1360200:CDS | 35.0% | |
| TATAAACATAAGCAAGGCAG+TGG | - | tig0016951:11303-11322 | Msa1360200:CDS | 35.0% | |
| ATAAACATAAGCAAGGCAGT+GGG | - | tig0016951:11304-11323 | Msa1360200:CDS | 35.0% | |
| TAGAATCCAGGCTAAATGTT+GGG | + | tig0016951:11390-11409 | Msa1360200:intergenic | 35.0% | |
| !! | CTTGTTATTACAGCAGATAG+GGG | + | tig0016951:11560-11579 | Msa1360200:intergenic | 35.0% |
| !! | GACTTGTTATTACAGCAGAT+AGG | + | tig0016951:11562-11581 | Msa1360200:intergenic | 35.0% |
| TCACATAGTAGTAGTTGTGT+GGG | - | tig0016951:11580-11599 | Msa1360200:CDS | 35.0% | |
| !! | AGATGAGTTGATTCTGAAGA+TGG | - | tig0016951:11651-11670 | Msa1360200:CDS | 35.0% |
| !!! | CATCTCAGAAAGCTTTTTCA+TGG | + | tig0016951:11854-11873 | Msa1360200:intergenic | 35.0% |
| ! | CATGAAAAAGCTTTCTGAGA+TGG | - | tig0016951:11852-11871 | Msa1360200:CDS | 35.0% |
| ATCAGCAACAAACTTTCAAG+AGG | - | tig0016951:11996-12015 | Msa1360200:CDS | 35.0% | |
| CCCAAATGAAGTTTCAATCA+TGG | - | tig0016951:12040-12059 | Msa1360200:CDS | 35.0% | |
| CCCATGATTGAAACTTCATT+TGG | + | tig0016951:12044-12063 | Msa1360200:intergenic | 35.0% | |
| GAATCAGAAATCGTTGTTAC+AGG | - | tig0016951:12065-12084 | Msa1360200:CDS | 35.0% | |
| ACAGCATCAGGAATAAATGT+TGG | + | tig0016951:12239-12258 | Msa1360200:intergenic | 35.0% | |
| CAAAGCAGTTGGAATAAAAC+AGG | + | tig0016951:12295-12314 | Msa1360200:intergenic | 35.0% | |
| ACAGCTTGAGTAATACATGT+TGG | + | tig0016951:12349-12368 | Msa1360200:intergenic | 35.0% | |
| TAAGAGCAGAAAATGAGTGT+GGG | + | tig0016951:12445-12464 | Msa1360200:intergenic | 35.0% | |
| TTAAGAGCAGAAAATGAGTG+TGG | + | tig0016951:12446-12465 | Msa1360200:intergenic | 35.0% | |
| ATTGAATGTGTTTGCATCTG+TGG | + | tig0016951:12615-12634 | Msa1360200:intergenic | 35.0% | |
| GCTTAATGAGTTTGTGTTAC+TGG | - | tig0016951:12643-12662 | Msa1360200:intron | 35.0% | |
| ! | TTTTCGTATAGAACTGACCA+TGG | + | tig0016951:12745-12764 | Msa1360200:intergenic | 35.0% |
| AAGAGAACAAATTGAGGAGT+CGG | - | tig0016951:12767-12786 | Msa1360200:intron | 35.0% | |
| !! | TGCAGCAATTTTTGAAGAGT+CGG | + | tig0016951:12901-12920 | Msa1360200:intergenic | 35.0% |
| AATAACTTCTCTATGAACGG+AGG | - | tig0016951:13032-13051 | Msa1360200:intron | 35.0% | |
| !! | GTGTTTTGAATAATGTCCTC+GGG | - | tig0016951:13273-13292 | Msa1360200:five_prime_UTR | 35.0% |
| TTGTGCTATGTGTTGAGCTT+GGG | + | tig0016951:8929-8948 | None:intergenic | 40.0% | |
| TTTGTGCTATGTGTTGAGCT+TGG | + | tig0016951:8930-8949 | None:intergenic | 40.0% | |
| TTCTTCAATTGGGGATCTTC+TGG | - | tig0016951:9128-9147 | Msa1360200:CDS | 40.0% | |
| TCTTCAATTGGGGATCTTCT+GGG | - | tig0016951:9129-9148 | Msa1360200:CDS | 40.0% | |
| !!! | GTACTTGGTTTTGGAATCAG+TGG | - | tig0016951:9573-9592 | Msa1360200:intron | 40.0% |
| GAATGCTTGTGAATTGATGC+TGG | - | tig0016951:9601-9620 | Msa1360200:intron | 40.0% | |
| ! | GTCGAAATTACCCCATGTTT+TGG | - | tig0016951:10248-10267 | Msa1360200:CDS | 40.0% |
| ACCACTTCTAATTCCTCCTT+AGG | + | tig0016951:10386-10405 | Msa1360200:intergenic | 40.0% | |
| CACTGAAGATGTTGCTACAA+AGG | - | tig0016951:10523-10542 | Msa1360200:CDS | 40.0% | |
| ACAAAGGCTATGTTAAGACC+TGG | - | tig0016951:10539-10558 | Msa1360200:CDS | 40.0% | |
| TTAAGACCTGGCATCTGTTA+TGG | - | tig0016951:10551-10570 | Msa1360200:CDS | 40.0% | |
| CGAGCTTCAGAATTACATCT+TGG | - | tig0016951:10676-10695 | Msa1360200:CDS | 40.0% | |
| GAATTACATCTTGGCCGAAT+TGG | - | tig0016951:10685-10704 | Msa1360200:CDS | 40.0% | |
| !! | ATTGGTTTGCGTTCTTCAAG+AGG | - | tig0016951:10703-10722 | Msa1360200:CDS | 40.0% |
| TTTGCGTTCTTCAAGAGGTT+AGG | - | tig0016951:10708-10727 | Msa1360200:CDS | 40.0% | |
| GCATCTCCGAAACTGAAAAA+TGG | + | tig0016951:10734-10753 | Msa1360200:intergenic | 40.0% | |
| ATTTCTCAGATTGAGTGCCT+GGG | + | tig0016951:10943-10962 | Msa1360200:intergenic | 40.0% | |
| TCAATCTGAGAAATCCGTTG+TGG | - | tig0016951:10949-10968 | Msa1360200:CDS | 40.0% | |
| GAAAATTCTCAAATTCGCGG+TGG | - | tig0016951:10974-10993 | Msa1360200:CDS | 40.0% | |
| GACAAGTCATCTAATGCTTC+CGG | - | tig0016951:11040-11059 | Msa1360200:CDS | 40.0% | |
| ACGAAAAATGTACTCCCTCT+TGG | + | tig0016951:11131-11150 | Msa1360200:intergenic | 40.0% | |
| !!! | TCCGATAACTTTTTTCCACG+TGG | + | tig0016951:11165-11184 | Msa1360200:intergenic | 40.0% |
| TGGTTTGAGTGGTTTAATCC+TGG | - | tig0016951:11225-11244 | Msa1360200:CDS | 40.0% | |
| AGAATCCAGGCTAAATGTTG+GGG | + | tig0016951:11389-11408 | Msa1360200:intergenic | 40.0% | |
| CTAGAATCCAGGCTAAATGT+TGG | + | tig0016951:11391-11410 | Msa1360200:intergenic | 40.0% | |
| ! | TGTAGCTGATAATGCATCTG+GGG | + | tig0016951:11488-11507 | Msa1360200:intergenic | 40.0% |
| ! | CTGTAGCTGATAATGCATCT+GGG | + | tig0016951:11489-11508 | Msa1360200:intergenic | 40.0% |
| ! | TCTGTAGCTGATAATGCATC+TGG | + | tig0016951:11490-11509 | Msa1360200:intergenic | 40.0% |
| GTCACATAGTAGTAGTTGTG+TGG | - | tig0016951:11579-11598 | Msa1360200:CDS | 40.0% | |
| CACATAGTAGTAGTTGTGTG+GGG | - | tig0016951:11581-11600 | Msa1360200:CDS | 40.0% | |
| TGTCTCATGGACTTGTCATA+TGG | + | tig0016951:11610-11629 | Msa1360200:intergenic | 40.0% | |
| ATGACAAGTCCATGAGACAA+TGG | - | tig0016951:11611-11630 | Msa1360200:CDS | 40.0% | |
| AACTTCAAGAATGGACAGAG+TGG | - | tig0016951:11701-11720 | Msa1360200:CDS | 40.0% | |
| ACTTCAAGAATGGACAGAGT+GGG | - | tig0016951:11702-11721 | Msa1360200:CDS | 40.0% | |
| !! | TTCTGAGATGGAAAATGCCT+TGG | - | tig0016951:11864-11883 | Msa1360200:CDS | 40.0% |
| ! | TCTGAGATGGAAAATGCCTT+GGG | - | tig0016951:11865-11884 | Msa1360200:CDS | 40.0% |
| AACGAGCTAATACTGCAGTA+CGG | - | tig0016951:11908-11927 | Msa1360200:CDS | 40.0% | |
| CAAATTGGCACAGATATCGA+AGG | - | tig0016951:12110-12129 | Msa1360200:CDS | 40.0% | |
| ATTCCAAATGCTTTGCCATG+CGG | - | tig0016951:12190-12209 | Msa1360200:exon | 40.0% | |
| AAAATGCATGGCAAAGCAGT+TGG | + | tig0016951:12306-12325 | Msa1360200:intergenic | 40.0% | |
| CCTGGTGAAGAAAAAATGCA+TGG | + | tig0016951:12318-12337 | Msa1360200:intergenic | 40.0% | |
| !!! | CCATGCATTTTTTCTTCACC+AGG | - | tig0016951:12315-12334 | Msa1360200:intron | 40.0% |
| ! | CAAGCTGTTGTTTGTTCTCA+CGG | - | tig0016951:12361-12380 | Msa1360200:intron | 40.0% |
| ! | AAGCTGTTGTTTGTTCTCAC+GGG | - | tig0016951:12362-12381 | Msa1360200:intron | 40.0% |
| TCATTTCCTTGTTGAATGGG+TGG | - | tig0016951:12542-12561 | Msa1360200:intron | 40.0% | |
| CATTTCCTTGTTGAATGGGT+GGG | - | tig0016951:12543-12562 | Msa1360200:intron | 40.0% | |
| TGGGTCTGTTCTCATTGTAA+AGG | - | tig0016951:12663-12682 | Msa1360200:intron | 40.0% | |
| AAATATCACAGGCTAAACGG+CGG | - | tig0016951:12688-12707 | Msa1360200:intron | 40.0% | |
| AACAGAAGAACTTCTCTCCA+TGG | - | tig0016951:12725-12744 | Msa1360200:intron | 40.0% | |
| GCACTAAAAAGAGGAATCGA+TGG | - | tig0016951:12918-12937 | Msa1360200:intron | 40.0% | |
| TAGCTTCAAGGACACGAAAA+AGG | - | tig0016951:12953-12972 | Msa1360200:intron | 40.0% | |
| AGCTTCAAGGACACGAAAAA+GGG | - | tig0016951:12954-12973 | Msa1360200:intron | 40.0% | |
| !! | AACCAGTTCTGAAATAGACG+CGG | + | tig0016951:13003-13022 | Msa1360200:intergenic | 40.0% |
| CAAACAACTTGATGTGCACA+TGG | + | tig0016951:13122-13141 | Msa1360200:intergenic | 40.0% | |
| ATGCATTCAGATCTTGGATC+TGG | - | tig0016951:13310-13329 | Msa1360200:five_prime_UTR | 40.0% | |
| TGTGCTATGTGTTGAGCTTG+GGG | + | tig0016951:8928-8947 | None:intergenic | 45.0% | |
| ATTTACTAGTGCGTATGCCG+TGG | - | tig0016951:9672-9691 | Msa1360200:intron | 45.0% | |
| TTTACTAGTGCGTATGCCGT+GGG | - | tig0016951:9673-9692 | Msa1360200:intron | 45.0% | |
| TAATTGATCCGTGCATCCCA+CGG | + | tig0016951:9692-9711 | Msa1360200:intergenic | 45.0% | |
| TTGCAGCTAAATGGCATCAC+TGG | - | tig0016951:10064-10083 | Msa1360200:intron | 45.0% | |
| TTACTTGACTCCCCTAAAGG+TGG | + | tig0016951:10173-10192 | Msa1360200:intergenic | 45.0% | |
| CTCTTACTTGACTCCCCTAA+AGG | + | tig0016951:10176-10195 | Msa1360200:intergenic | 45.0% | |
| ! | TGTGACTTGCCCAAAACATG+GGG | + | tig0016951:10261-10280 | Msa1360200:intergenic | 45.0% |
| ! | CTGTGACTTGCCCAAAACAT+GGG | + | tig0016951:10262-10281 | Msa1360200:intergenic | 45.0% |
| TGACCTCAGATGAAACTGCA+GGG | + | tig0016951:10352-10371 | Msa1360200:intergenic | 45.0% | |
| CTTCTAATTCCTCCTTAGGC+TGG | + | tig0016951:10382-10401 | Msa1360200:intergenic | 45.0% | |
| GCCTAAGGAGGAATTAGAAG+TGG | - | tig0016951:10382-10401 | Msa1360200:CDS | 45.0% | |
| TTAGAAGTGGTTGAGTCCCA+TGG | - | tig0016951:10395-10414 | Msa1360200:CDS | 45.0% | |
| TTGCATCCATAACAGATGCC+AGG | + | tig0016951:10560-10579 | Msa1360200:intergenic | 45.0% | |
| TCAGTTTCGGAGATGCAATG+TGG | - | tig0016951:10738-10757 | Msa1360200:CDS | 45.0% | |
| TCACATGCTTGTGCAATGGA+TGG | - | tig0016951:10788-10807 | Msa1360200:CDS | 45.0% | |
| AGTTTATGCAGCGATGGCAT+TGG | - | tig0016951:10824-10843 | Msa1360200:CDS | 45.0% | |
| CCTGGGGGAATTGAATTACA+AGG | + | tig0016951:10926-10945 | Msa1360200:intergenic | 45.0% | |
| CCTTGTAATTCAATTCCCCC+AGG | - | tig0016951:10923-10942 | Msa1360200:CDS | 45.0% | |
| TTTCTCAGATTGAGTGCCTG+GGG | + | tig0016951:10942-10961 | Msa1360200:intergenic | 45.0% | |
| GATTTCTCAGATTGAGTGCC+TGG | + | tig0016951:10944-10963 | Msa1360200:intergenic | 45.0% | |
| ! | CCGCATTTTTCTTGAAGCAG+GGG | + | tig0016951:11079-11098 | Msa1360200:intergenic | 45.0% |
| CCCCTGCTTCAAGAAAAATG+CGG | - | tig0016951:11076-11095 | Msa1360200:CDS | 45.0% | |
| ! | CCCGCATTTTTCTTGAAGCA+GGG | + | tig0016951:11080-11099 | Msa1360200:intergenic | 45.0% |
| CCCTGCTTCAAGAAAAATGC+GGG | - | tig0016951:11077-11096 | Msa1360200:CDS | 45.0% | |
| ! | TCCCGCATTTTTCTTGAAGC+AGG | + | tig0016951:11081-11100 | Msa1360200:intergenic | 45.0% |
| TATCGGACATACGGGTCTAA+AGG | - | tig0016951:11178-11197 | Msa1360200:CDS | 45.0% | |
| ATCGGACATACGGGTCTAAA+GGG | - | tig0016951:11179-11198 | Msa1360200:CDS | 45.0% | |
| TCTAAAGGGTCTTCAAGAGG+AGG | - | tig0016951:11193-11212 | Msa1360200:CDS | 45.0% | |
| AGGCTAAATGTTGGGGTAGA+TGG | + | tig0016951:11382-11401 | Msa1360200:intergenic | 45.0% | |
| ATCTACCCCAACATTTAGCC+TGG | - | tig0016951:11381-11400 | Msa1360200:CDS | 45.0% | |
| ! | GTAGCTGATAATGCATCTGG+GGG | + | tig0016951:11487-11506 | Msa1360200:intergenic | 45.0% |
| ! | TGATTCTGAAGATGGTTCCG+AGG | - | tig0016951:11659-11678 | Msa1360200:CDS | 45.0% |
| ! | GATTCTGAAGATGGTTCCGA+GGG | - | tig0016951:11660-11679 | Msa1360200:CDS | 45.0% |
| GACAGAGTGGGCAAATCAAA+AGG | - | tig0016951:11714-11733 | Msa1360200:CDS | 45.0% | |
| GGCAAATCAAAAGGTGATGC+AGG | - | tig0016951:11723-11742 | Msa1360200:CDS | 45.0% | |
| AGGCTGAGCTTAAGACACTA+AGG | - | tig0016951:11770-11789 | Msa1360200:CDS | 45.0% | |
| GAAAATGCCTTGGGTAAAGC+AGG | - | tig0016951:11874-11893 | Msa1360200:CDS | 45.0% | |
| AGATGGAGAATGCTGCATTG+AGG | - | tig0016951:11938-11957 | Msa1360200:CDS | 45.0% | |
| TGCTGCATTGAGGAAAGAGA+TGG | - | tig0016951:11948-11967 | Msa1360200:CDS | 45.0% | |
| TGCATTGAGGAAAGAGATGG+AGG | - | tig0016951:11951-11970 | Msa1360200:CDS | 45.0% | |
| ! | AGCTGTTGTTTGTTCTCACG+GGG | - | tig0016951:12363-12382 | Msa1360200:intron | 45.0% |
| CATTACCCACCCATTCAACA+AGG | + | tig0016951:12551-12570 | Msa1360200:intergenic | 45.0% | |
| CAATTTGATCCTCTCCTCCT+TGG | + | tig0016951:12799-12818 | Msa1360200:intergenic | 45.0% | |
| CAAGGAGGAGAGGATCAAAT+TGG | - | tig0016951:12797-12816 | Msa1360200:intron | 45.0% | |
| GGAGAGGATCAAATTGGAAG+CGG | - | tig0016951:12803-12822 | Msa1360200:intron | 45.0% | |
| GATCAAATTGGAAGCGGAGA+AGG | - | tig0016951:12809-12828 | Msa1360200:intron | 45.0% | |
| TTTCGTGTCCTTGAAGCTAC+CGG | + | tig0016951:12952-12971 | Msa1360200:intergenic | 45.0% | |
| AAGGACACGAAAAAGGGTTC+TGG | - | tig0016951:12960-12979 | Msa1360200:intron | 45.0% | |
| !! | TTCTGAAATAGACGCGGTGT+GGG | + | tig0016951:12997-13016 | Msa1360200:intergenic | 45.0% |
| AACTTCTCTATGAACGGAGG+AGG | - | tig0016951:13035-13054 | Msa1360200:intron | 45.0% | |
| CAACAGACATCTCTTCCGAA+AGG | + | tig0016951:13091-13110 | Msa1360200:intergenic | 45.0% | |
| AATGAGCTCCATGAGAAGCA+GGG | - | tig0016951:13152-13171 | Msa1360200:intron | 45.0% | |
| TGCAAGATTGTCCTTCTTGC+AGG | - | tig0016951:13177-13196 | Msa1360200:intron | 45.0% | |
| ACAGAAATTCGCTCCTGGAT+GGG | + | tig0016951:13206-13225 | Msa1360200:intergenic | 45.0% | |
| ATTATTCTATGGGAGTCCCG+AGG | + | tig0016951:13292-13311 | Msa1360200:intergenic | 45.0% | |
| ! | ATGGCATCACTGGTTGTCAG+TGG | - | tig0016951:10074-10093 | Msa1360200:intron | 50.0% |
| TTCAGGGCTGATCCACCTTT+AGG | - | tig0016951:10158-10177 | Msa1360200:CDS | 50.0% | |
| TCAGGGCTGATCCACCTTTA+GGG | - | tig0016951:10159-10178 | Msa1360200:CDS | 50.0% | |
| ! | GCTGTGACTTGCCCAAAACA+TGG | + | tig0016951:10263-10282 | Msa1360200:intergenic | 50.0% |
| GACTTGTGCACTGTTAGCCA+CGG | - | tig0016951:10287-10306 | Msa1360200:CDS | 50.0% | |
| GTTAGCCACGGTTGTTCTGA+TGG | - | tig0016951:10299-10318 | Msa1360200:CDS | 50.0% | |
| TCAAGCCATCAGAACAACCG+TGG | + | tig0016951:10307-10326 | Msa1360200:intergenic | 50.0% | |
| CTGCAGGGCTAGATAATCCA+AGG | + | tig0016951:10337-10356 | Msa1360200:intergenic | 50.0% | |
| TAGCCCTGCAGTTTCATCTG+AGG | - | tig0016951:10346-10365 | Msa1360200:CDS | 50.0% | |
| CTGACCTCAGATGAAACTGC+AGG | + | tig0016951:10353-10372 | Msa1360200:intergenic | 50.0% | |
| ! | CTGCAGTTTCATCTGAGGTC+AGG | - | tig0016951:10351-10370 | Msa1360200:CDS | 50.0% |
| ATCACTCCAATCAGCGCCAT+GGG | + | tig0016951:10414-10433 | Msa1360200:intergenic | 50.0% | |
| CGTGTCACATGCTTGTGCAA+TGG | - | tig0016951:10784-10803 | Msa1360200:CDS | 50.0% | |
| TTCTCAGATTGAGTGCCTGG+GGG | + | tig0016951:10941-10960 | Msa1360200:intergenic | 50.0% | |
| ! | TCAAATTCGCGGTGGACTCT+TGG | - | tig0016951:10982-11001 | Msa1360200:CDS | 50.0% |
| TTGAAGCAGGGGAGATTGAG+AGG | + | tig0016951:11068-11087 | Msa1360200:intergenic | 50.0% | |
| TCCATTCGAGTAGCACCAAG+AGG | - | tig0016951:11113-11132 | Msa1360200:CDS | 50.0% | |
| CCATTCGAGTAGCACCAAGA+GGG | - | tig0016951:11114-11133 | Msa1360200:CDS | 50.0% | |
| TCGTCAGAAGTCAATCCACG+TGG | - | tig0016951:11147-11166 | Msa1360200:CDS | 50.0% | |
| GGGTCTAAAGGGTCTTCAAG+AGG | - | tig0016951:11190-11209 | Msa1360200:CDS | 50.0% | |
| TCAAGAGGAGGAAAGCTGAG+TGG | - | tig0016951:11205-11224 | Msa1360200:CDS | 50.0% | |
| GGAAAGCTGAGTGGTTTGAG+TGG | - | tig0016951:11214-11233 | Msa1360200:CDS | 50.0% | |
| ! | GGACTACTGACTGCTGGTAT+AGG | + | tig0016951:11466-11485 | Msa1360200:intergenic | 50.0% |
| TTGGGGCAACCATTGTCTCA+TGG | + | tig0016951:11623-11642 | Msa1360200:intergenic | 50.0% | |
| TGAAGATGGTTCCGAGGGTT+CGG | - | tig0016951:11665-11684 | Msa1360200:CDS | 50.0% | |
| ! | TCGTCGACTGAGTAAGGACA+AGG | - | tig0016951:11750-11769 | Msa1360200:CDS | 50.0% |
| AATGCCTTGGGTAAAGCAGG+TGG | - | tig0016951:11877-11896 | Msa1360200:CDS | 50.0% | |
| TTGTCCACCTGCTTTACCCA+AGG | + | tig0016951:11884-11903 | Msa1360200:intergenic | 50.0% | |
| AAAGCAAGCCGAAGTGCAAG+CGG | - | tig0016951:12137-12156 | Msa1360200:CDS | 50.0% | |
| GAATTGCTCCGCTTGCACTT+CGG | + | tig0016951:12148-12167 | Msa1360200:intergenic | 50.0% | |
| ! | GAACCGCATGGCAAAGCATT+TGG | + | tig0016951:12196-12215 | Msa1360200:intergenic | 50.0% |
| TCTGGTGAAGATGAACCGCA+TGG | + | tig0016951:12208-12227 | Msa1360200:intergenic | 50.0% | |
| ! | GCTGTTGTTTGTTCTCACGG+GGG | - | tig0016951:12364-12383 | Msa1360200:intron | 50.0% |
| ! | CTGTTGTTTGTTCTCACGGG+GGG | - | tig0016951:12365-12384 | Msa1360200:intron | 50.0% |
| ! | ATACGTGTCACTGCGTGTGT+CGG | + | tig0016951:12489-12508 | Msa1360200:intergenic | 50.0% |
| GGAATCGATGGAAGCTATGC+CGG | - | tig0016951:12930-12949 | Msa1360200:intron | 50.0% | |
| AAGCTATGCCGGTAGCTTCA+AGG | - | tig0016951:12941-12960 | Msa1360200:intron | 50.0% | |
| ! | TCTGAAATAGACGCGGTGTG+GGG | + | tig0016951:12996-13015 | Msa1360200:intergenic | 50.0% |
| !! | GTTCTGAAATAGACGCGGTG+TGG | + | tig0016951:12998-13017 | Msa1360200:intergenic | 50.0% |
| CACCGCGTCTATTTCAGAAC+TGG | - | tig0016951:12998-13017 | Msa1360200:intron | 50.0% | |
| ! | TGAACGGAGGAGGTGTGAAA+CGG | - | tig0016951:13045-13064 | Msa1360200:intron | 50.0% |
| ! | AGGAGGTGTGAAACGGGAAA+GGG | - | tig0016951:13052-13071 | Msa1360200:intron | 50.0% |
| GGAGTGTGTGATGTGCCTTT+CGG | - | tig0016951:13073-13092 | Msa1360200:intron | 50.0% | |
| CAATGAGCTCCATGAGAAGC+AGG | - | tig0016951:13151-13170 | Msa1360200:intron | 50.0% | |
| CTTGCATTCCCTGCTTCTCA+TGG | + | tig0016951:13163-13182 | Msa1360200:intergenic | 50.0% | |
| CAGAAATTCGCTCCTGGATG+GGG | + | tig0016951:13205-13224 | Msa1360200:intergenic | 50.0% | |
| CACAGAAATTCGCTCCTGGA+TGG | + | tig0016951:13207-13226 | Msa1360200:intergenic | 50.0% | |
| AACGCACAGAAATTCGCTCC+TGG | + | tig0016951:13211-13230 | Msa1360200:intergenic | 50.0% | |
| GCTATGTGTTGAGCTTGGGG+AGG | + | tig0016951:8925-8944 | None:intergenic | 55.0% | |
| CAGGGCTGATCCACCTTTAG+GGG | - | tig0016951:10160-10179 | Msa1360200:CDS | 55.0% | |
| GATGGCTTGAAGCTCGACCT+TGG | - | tig0016951:10317-10336 | Msa1360200:CDS | 55.0% | |
| !! | TTGAGTCCCATGGCGCTGAT+TGG | - | tig0016951:10405-10424 | Msa1360200:CDS | 55.0% |
| GATCACTCCAATCAGCGCCA+TGG | + | tig0016951:10415-10434 | Msa1360200:intergenic | 55.0% | |
| !! | TGCAGCGATGGCATTGGTGA+TGG | - | tig0016951:10830-10849 | Msa1360200:CDS | 55.0% |
| CAGGGGAGATTGAGAGGTTC+CGG | + | tig0016951:11062-11081 | Msa1360200:intergenic | 55.0% | |
| !! | CCCTCTTGGTGCTACTCGAA+TGG | + | tig0016951:11117-11136 | Msa1360200:intergenic | 55.0% |
| GAAGATGGTTCCGAGGGTTC+GGG | - | tig0016951:11666-11685 | Msa1360200:CDS | 55.0% | |
| ! | TTTTGCAGCTCCCGAACCCT+CGG | + | tig0016951:11679-11698 | Msa1360200:intergenic | 55.0% |
| GGGTAAAGCAGGTGGACAAG+TGG | - | tig0016951:11885-11904 | Msa1360200:CDS | 55.0% | |
| TGCAGTACGGAAGCTCGAGA+TGG | - | tig0016951:11921-11940 | Msa1360200:CDS | 55.0% | |
| GGAGGCTGCTAAGTTACGTG+CGG | - | tig0016951:11969-11988 | Msa1360200:CDS | 55.0% | |
| AGTGCAAGCGGAGCAATTCG+AGG | - | tig0016951:12149-12168 | Msa1360200:CDS | 55.0% | |
| TTTGTTCTCACGGGGGGCTT+CGG | - | tig0016951:12371-12390 | Msa1360200:intron | 55.0% | |
| TGAGGAGTCGGCTAGAACCA+AGG | - | tig0016951:12779-12798 | Msa1360200:intron | 55.0% | |
| ! | GAACGGAGGAGGTGTGAAAC+GGG | - | tig0016951:13046-13065 | Msa1360200:intron | 55.0% |
| ! | GAGGAGGTGTGAAACGGGAA+AGG | - | tig0016951:13051-13070 | Msa1360200:intron | 55.0% |
| TGCGTATGCCGTGGGATGCA+CGG | - | tig0016951:9681-9700 | Msa1360200:intron | 60.0% | |
| GGTCAGGCTTAGCCAGCCTA+AGG | - | tig0016951:10367-10386 | Msa1360200:CDS | 60.0% | |
| CAGGCTTAGCCAGCCTAAGG+AGG | - | tig0016951:10370-10389 | Msa1360200:CDS | 60.0% | |
| ! | TCTGGGGGACTACTGACTGC+TGG | + | tig0016951:11472-11491 | Msa1360200:intergenic | 60.0% |
| ! | GGCTGCTCGTCGACTGAGTA+AGG | - | tig0016951:11744-11763 | Msa1360200:CDS | 60.0% |
| ATCACAGGCTAAACGGCGGC+AGG | - | tig0016951:12692-12711 | Msa1360200:intron | 60.0% | |
| GGAGTCGGCTAGAACCAAGG+AGG | - | tig0016951:12782-12801 | Msa1360200:intron | 60.0% | |
| CGGCTAGAACCAAGGAGGAG+AGG | - | tig0016951:12787-12806 | Msa1360200:intron | 60.0% | |
| TGGATGGGGCTCCTGCAAGA+AGG | + | tig0016951:13191-13210 | Msa1360200:intergenic | 60.0% | |
| TTCTTGCAGGAGCCCCATCC+AGG | - | tig0016951:13190-13209 | Msa1360200:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016951 | gene | 8896 | 13386 | 8896 | ID=Msa1360200;Name=Msa1360200 |
| tig0016951 | mRNA | 8896 | 13386 | 8896 | ID=Msa1360200-mRNA-1;Parent=Msa1360200;Name=Msa1360200-mRNA-1;_AED=0.07;_eAED=0.07;_QI=230|1|1|1|0.33|0.25|4|142|880 |
| tig0016951 | exon | 8896 | 9583 | 8896 | ID=Msa1360200-mRNA-1:exon:11805;Parent=Msa1360200-mRNA-1 |
| tig0016951 | exon | 10112 | 12212 | 10112 | ID=Msa1360200-mRNA-1:exon:11804;Parent=Msa1360200-mRNA-1 |
| tig0016951 | exon | 12883 | 12921 | 12883 | ID=Msa1360200-mRNA-1:exon:11803;Parent=Msa1360200-mRNA-1 |
| tig0016951 | exon | 13200 | 13386 | 13200 | ID=Msa1360200-mRNA-1:exon:11802;Parent=Msa1360200-mRNA-1 |
| tig0016951 | five_prime_UTR | 13200 | 13386 | 13200 | ID=Msa1360200-mRNA-1:five_prime_utr;Parent=Msa1360200-mRNA-1 |
| tig0016951 | five_prime_UTR | 12883 | 12921 | 12883 | ID=Msa1360200-mRNA-1:five_prime_utr;Parent=Msa1360200-mRNA-1 |
| tig0016951 | five_prime_UTR | 12209 | 12212 | 12209 | ID=Msa1360200-mRNA-1:five_prime_utr;Parent=Msa1360200-mRNA-1 |
| tig0016951 | CDS | 10112 | 12208 | 10112 | ID=Msa1360200-mRNA-1:cds;Parent=Msa1360200-mRNA-1 |
| tig0016951 | CDS | 9038 | 9583 | 9038 | ID=Msa1360200-mRNA-1:cds;Parent=Msa1360200-mRNA-1 |
| tig0016951 | three_prime_UTR | 8896 | 9037 | 8896 | ID=Msa1360200-mRNA-1:three_prime_utr;Parent=Msa1360200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
