AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0186540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0186540 MtrunA17_Chr3g0143691 100.000 108 0 0 1 108 1 108 7.87e-74 214
Msa0186540 MtrunA17_Chr8g0373451 43.519 108 55 3 1 108 1 102 1.26e-20 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0186540 AT1G20460.1 80.556 108 19 1 1 108 1 106 1.07e-52 160
Msa0186540 AT1G76185.1 77.778 108 22 1 1 108 1 106 6.05e-42 134

Find 90 sgRNAs with CRISPR-Local

Find 475 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTAACCACATTCGTTTCT+AGG 0.163156 2_1:-1258824 Msa0186540:five_prime_UTR
AATGCCAATATTTGACAATT+TGG 0.189532 2_1:+1252068 Msa0186530:CDS
CTTATGATTCATCAATGATA+TGG 0.219940 2_1:-1252649 Msa0186540:three_prime_UTR
ACTTGTTATATTAGCTTTCT+TGG 0.251758 2_1:-1253337 Msa0186540:CDS
TGATTATAACAGGAGCAATT+TGG 0.259052 2_1:+1252358 Msa0186530:CDS
AATTCCAAATTGTCAAATAT+TGG 0.263642 2_1:-1252072 Msa0186540:three_prime_UTR
GATTATAACAGGAGCAATTT+GGG 0.286205 2_1:+1252359 Msa0186530:CDS
CTTGGAAGTGTTGGTGATAT+TGG 0.288093 2_1:+1258608 None:intergenic
CAGGGATAAGCTAATGTTAT+TGG 0.303074 2_1:-1252240 Msa0186540:three_prime_UTR
ATGTGGTGGTCTTTGTAATA+TGG 0.308754 2_1:-1253362 Msa0186540:CDS
CCAAGTTTGGCAGGCCTCAT+TGG 0.309414 2_1:+1252204 Msa0186530:CDS
ACAAGGTCTGTTCCATTTGC+TGG 0.320898 2_1:-1252103 Msa0186540:three_prime_UTR
ATATTGGCATTGCATAGATT+TGG 0.333932 2_1:-1252056 Msa0186540:three_prime_UTR
CAACTATCAAAGTTTGATCT+TGG 0.344411 2_1:-1253151 Msa0186540:three_prime_UTR
GTTACCATTCTTGCCAAGTT+TGG 0.346473 2_1:+1252191 Msa0186530:CDS
TAAAATCAAAACGACGACTA+TGG 0.346667 2_1:+1258788 None:intergenic
TAATCTGAATCTTACTACTA+TGG 0.355474 2_1:-1252420 Msa0186540:three_prime_UTR
CGTTATCATGGTATTGCTCC+TGG 0.359499 2_1:+1258719 None:intergenic
AATCAGTATCCACATGAAAC+AGG 0.375042 2_1:-1252259 Msa0186540:three_prime_UTR
GCACAACTTGGTATCTAAAC+TGG 0.375967 2_1:+1252301 Msa0186530:CDS
TTCACATATAAGTTCGTAAA+GGG 0.388893 2_1:+1252819 None:intergenic
GACAGAGGCCCAGTCATGTT+TGG 0.389709 2_1:+1258653 None:intergenic
CCAATGAGGCCTGCCAAACT+TGG 0.398074 2_1:-1252204 Msa0186540:three_prime_UTR
TCCAACCGGATAAGCTTGTT+TGG 0.405272 2_1:+1252968 None:intergenic
CTAAGTGTACTGATTATAAC+AGG 0.406004 2_1:+1252348 Msa0186530:CDS
AACTATCAAAGTTTGATCTT+GGG 0.408392 2_1:-1253150 Msa0186540:three_prime_UTR
CCATTCTTGCCAAGTTTGGC+AGG 0.412295 2_1:+1252195 Msa0186530:CDS
TACATCCAAACAAGCTTATC+CGG 0.412396 2_1:-1252973 Msa0186540:three_prime_UTR
TAACGCTACAGAAATGAAAA+AGG 0.435226 2_1:-1252172 Msa0186540:three_prime_UTR
GGAAGAAGTAGAAGAGAAGA+AGG 0.442136 2_1:+1258629 None:intergenic
CCTGCCAAACTTGGCAAGAA+TGG 0.448920 2_1:-1252195 Msa0186540:three_prime_UTR
AACTGGACGCTAGGAGCAGT+TGG 0.454856 2_1:+1252318 Msa0186530:CDS
TGGTGTAACTTAGTTGTGCC+AGG 0.460930 2_1:-1252943 Msa0186540:three_prime_UTR
AAGATTCGATCGCGTTATCA+TGG 0.461012 2_1:+1258707 None:intergenic
TTGATTTGCCAGCATTTGCT+AGG 0.463022 2_1:+1252530 None:intergenic
AATTTGGGGCATTGTAGCAC+TGG 0.471998 2_1:+1252374 Msa0186530:CDS
TTCAATGACGAATGAGAAGC+TGG 0.477316 2_1:+1253055 None:intergenic
TTATGATTCATCAATGATAT+GGG 0.486486 2_1:-1252648 Msa0186540:three_prime_UTR
CTTCCATTGTCAATGTAAAG+TGG 0.495198 2_1:-1253177 Msa0186540:exon
AATTCAGATACACCAGCAAA+TGG 0.496255 2_1:+1252091 Msa0186530:CDS
GTTGTGTTGCAGGGTGGATG+TGG 0.497670 2_1:-1253379 Msa0186540:intron
TGTGGTGGTCTTTGTAATAT+GGG 0.499279 2_1:-1253361 Msa0186540:CDS
GTTATCATGGTATTGCTCCT+GGG 0.514041 2_1:+1258720 None:intergenic
TCTTTACACAAGAGTTCGCC+TGG 0.515467 2_1:+1252783 None:intergenic
ACTGGACGCTAGGAGCAGTT+GGG 0.517354 2_1:+1252319 Msa0186530:CDS
TAAGTTACACCACCTCCAAC+CGG 0.519203 2_1:+1252954 None:intergenic
ATAGCCTTCAGAAGTCTCTT+CGG 0.519501 2_1:+1252141 Msa0186530:CDS
AATTACAAAGCAAGTAAGAC+TGG 0.525332 2_1:-1253226 Msa0186540:CDS
AGATTCGATCCAAACATGAC+TGG 0.525414 2_1:-1258662 Msa0186540:CDS
AATACAACAAAGTTAATATG+TGG 0.532838 2_1:+1252696 None:intergenic
TAGCTGTGATATTATGCAGA+AGG 0.533940 2_1:-1252739 Msa0186540:three_prime_UTR
TTTCACATATAAGTTCGTAA+AGG 0.541820 2_1:+1252818 None:intergenic
AGTTTGGCAGGCCTCATTGG+AGG 0.545784 2_1:+1252207 Msa0186530:CDS
CAAGCTTATCCGGTTGGAGG+TGG 0.549742 2_1:-1252963 Msa0186540:three_prime_UTR
ACTACTATGGATTGAAGAAG+TGG 0.554728 2_1:-1252407 Msa0186540:three_prime_UTR
TGTAAAACCCTAGCAAATGC+TGG 0.556081 2_1:-1252538 Msa0186540:three_prime_UTR
TAGCTTATCCCTGTTTCATG+TGG 0.559338 2_1:+1252250 Msa0186530:CDS
TGATTTGCCAGCATTTGCTA+GGG 0.562661 2_1:+1252531 None:intergenic
TCCAAACAAGCTTATCCGGT+TGG 0.566894 2_1:-1252969 Msa0186540:three_prime_UTR
ATTGGCATACTTGGAAGTGT+TGG 0.574281 2_1:+1258599 None:intergenic
AAACAAGCTTATCCGGTTGG+AGG 0.575266 2_1:-1252966 Msa0186540:three_prime_UTR
AAGTTGACTAGAGAATATAA+AGG 0.582501 2_1:-1253003 Msa0186540:three_prime_UTR
CTTATAGAGAGAGAGGACCC+AGG 0.586727 2_1:-1258737 Msa0186540:five_prime_UTR
AAATTAAACAATAGTTGTGG+TGG 0.589861 2_1:-1252625 Msa0186540:three_prime_UTR
GTTCGTGCTTATAGAGAGAG+AGG 0.591700 2_1:-1258744 Msa0186540:five_prime_UTR
AGATATATGTGACAAGAACC+TGG 0.592487 2_1:+1252925 None:intergenic
ATACCACTTTACATTGACAA+TGG 0.594407 2_1:+1253174 None:intergenic
AGACTAATATAAAAGCAAGC+TGG 0.596382 2_1:+1253280 None:intergenic
TCAATGTAAATGCTCATGAA+TGG 0.597739 2_1:+1253079 None:intergenic
ATTTGGGGCATTGTAGCACT+GGG 0.597853 2_1:+1252375 Msa0186530:CDS
ATTCGAAGCCACCTTGGACA+AGG 0.601009 2_1:-1252120 Msa0186540:three_prime_UTR
TGGTATCTAAACTGGACGCT+AGG 0.603358 2_1:+1252309 Msa0186530:CDS
AAGGCTATTCGAAGCCACCT+TGG 0.605278 2_1:-1252126 Msa0186540:three_prime_UTR
GGGAAATTAAACAATAGTTG+TGG 0.607700 2_1:-1252628 Msa0186540:three_prime_UTR
GTGTTGCAGGGTGGATGTGG+TGG 0.608417 2_1:-1253376 Msa0186540:intron
AGAAGAGAAGAAGGAGACAG+AGG 0.608463 2_1:+1258638 None:intergenic
TTCAAACCTAGAAACGAATG+TGG 0.608755 2_1:+1258818 None:intergenic
GATTCGATCCAAACATGACT+GGG 0.609935 2_1:-1258661 Msa0186540:CDS
TTCTCTAGTCAACTTGCGAT+AGG 0.610918 2_1:+1253011 None:intergenic
ATCAGTATCCACATGAAACA+GGG 0.613528 2_1:-1252258 Msa0186540:three_prime_UTR
CAAAGCAAGTAAGACTGGCA+AGG 0.617265 2_1:-1253221 Msa0186540:CDS
GTGAAAGTTCGAATACTACC+AGG 0.632377 2_1:-1252801 Msa0186540:three_prime_UTR
ATTATAACAGGAGCAATTTG+GGG 0.641883 2_1:+1252360 Msa0186530:CDS
TGCTGGCAAATCAATGTCTG+CGG 0.644552 2_1:-1252521 Msa0186540:three_prime_UTR
AATGGAACAGACCTTGTCCA+AGG 0.646427 2_1:+1252109 Msa0186530:CDS
AAAATATAACTTACACTACA+GGG 0.656372 2_1:-1252466 Msa0186540:three_prime_UTR
TGGCAAGGAAGAAGAAACGA+AGG 0.664230 2_1:-1253206 Msa0186540:CDS
GCAGCCGAAGAGACTTCTGA+AGG 0.664301 2_1:-1252145 Msa0186540:three_prime_UTR
GTAGAGCAACTCCTCCAATG+AGG 0.679984 2_1:-1252218 Msa0186540:three_prime_UTR
GGAACAGACCTTGTCCAAGG+TGG 0.695952 2_1:+1252112 Msa0186530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTATATTATTAATTA+AGG + chr2_1:1254126-1254145 None:intergenic 0.0%
!!! ATCAATTGATAATTTTTTTT+TGG - chr2_1:1252979-1252998 Msa0186540:three_prime_UTR 10.0%
!! TCTATTTAAATAACAAATAA+GGG - chr2_1:1257159-1257178 Msa0186540:intron 10.0%
!! ATTTCATAGAATAAATTTGT+AGG - chr2_1:1252596-1252615 Msa0186540:three_prime_UTR 15.0%
!!! TCACTAAATATTTTTGTTTA+AGG - chr2_1:1252842-1252861 Msa0186540:three_prime_UTR 15.0%
!!! TAAATATTTTTGTTTAAGGA+GGG - chr2_1:1252846-1252865 Msa0186540:three_prime_UTR 15.0%
!!! TTTGTTAGTATTGTTTTATT+AGG - chr2_1:1252935-1252954 Msa0186540:three_prime_UTR 15.0%
!! TAGAATAATAAAGAATAATG+TGG + chr2_1:1253557-1253576 None:intergenic 15.0%
!! AGAATTATAAAGAAAATGTA+TGG + chr2_1:1254563-1254582 None:intergenic 15.0%
!!! AAATTGTTTTTGAGTAAAAT+TGG - chr2_1:1255271-1255290 Msa0186540:intron 15.0%
!! GTCTATTTAAATAACAAATA+AGG - chr2_1:1257158-1257177 Msa0186540:intron 15.0%
!!! TTGGATTGATTATTATTTTA+TGG - chr2_1:1257343-1257362 Msa0186540:intron 15.0%
!! AAAATGAATAGAGTTTGAAT+TGG + chr2_1:1252307-1252326 Msa0186530:CDS 20.0%
!! CAAGAGAAATATTCATAATT+GGG + chr2_1:1252341-1252360 Msa0186530:CDS 20.0%
!! ACAAGAGAAATATTCATAAT+TGG + chr2_1:1252342-1252361 Msa0186530:CDS 20.0%
!! AACAAGAGAAATATATACAT+GGG + chr2_1:1252389-1252408 Msa0186530:CDS 20.0%
!! AAACAAGAGAAATATATACA+TGG + chr2_1:1252390-1252409 Msa0186530:CDS 20.0%
!! GCTTCAATTATAAGATTAAT+TGG - chr2_1:1252733-1252752 Msa0186540:three_prime_UTR 20.0%
!! AAAAATATTTAGTGATACCA+AGG + chr2_1:1252837-1252856 None:intergenic 20.0%
!!! CTAAATATTTTTGTTTAAGG+AGG - chr2_1:1252845-1252864 Msa0186540:three_prime_UTR 20.0%
!!! AAATATTTTTGTTTAAGGAG+GGG - chr2_1:1252847-1252866 Msa0186540:three_prime_UTR 20.0%
!! TAAATCATAATGCAAATAGA+GGG + chr2_1:1253199-1253218 None:intergenic 20.0%
!! ATAAATCATAATGCAAATAG+AGG + chr2_1:1253200-1253219 None:intergenic 20.0%
!!! TCATTTTGACTGTAAAAAAA+AGG + chr2_1:1253959-1253978 None:intergenic 20.0%
!! AAATGTTGTATCAAACTATA+TGG + chr2_1:1254703-1254722 None:intergenic 20.0%
!! TAATATCATTCATATGAAGT+TGG - chr2_1:1255562-1255581 Msa0186540:intron 20.0%
!!! TTGTCGATGATTTTTTTTTT+GGG - chr2_1:1255781-1255800 Msa0186540:intron 20.0%
!! CAGAATAATAAAGAATAATG+TGG + chr2_1:1256427-1256446 None:intergenic 20.0%
!! CACATTATTCTTTATTATTC+TGG - chr2_1:1253555-1253574 Msa0186540:intron 20.0%
!! CAAAATTATATCAACGTTAA+GGG + chr2_1:1256759-1256778 None:intergenic 20.0%
!! TCAAAATTATATCAACGTTA+AGG + chr2_1:1256760-1256779 None:intergenic 20.0%
!! CAAATAAAGGACATAATTAT+CGG - chr2_1:1256985-1257004 Msa0186540:intron 20.0%
!! ATTTAAATAACAAATAAGGG+AGG - chr2_1:1257162-1257181 Msa0186540:intron 20.0%
!! TGTAATTTACTTCTTGATAA+TGG - chr2_1:1257250-1257269 Msa0186540:intron 20.0%
!!! AAGTTTTTATAAGAAACTCA+AGG + chr2_1:1257398-1257417 None:intergenic 20.0%
!!! ATCTTTTTATTAATGCTCTT+TGG - chr2_1:1257440-1257459 Msa0186540:intron 20.0%
!!! TCTTTTTATTAATGCTCTTT+GGG - chr2_1:1257441-1257460 Msa0186540:intron 20.0%
!! AATACAACAAAGTTAATATG+TGG + chr2_1:1258192-1258211 None:intergenic 20.0%
!! TTATGATTCATCAATGATAT+GGG - chr2_1:1258237-1258256 Msa0186540:intron 20.0%
!! AAAAATATAACTTACACTAC+AGG - chr2_1:1258418-1258437 Msa0186540:intron 20.0%
!! AAAATATAACTTACACTACA+GGG - chr2_1:1258419-1258438 Msa0186540:intron 20.0%
!! AATTCCAAATTGTCAAATAT+TGG - chr2_1:1258813-1258832 Msa0186540:five_prime_UTR 20.0%
! TCAGATAGGTTAATGAAAAA+TGG + chr2_1:1252459-1252478 None:intergenic 25.0%
! CATCATAAGAATTATTTCAG+AGG + chr2_1:1252541-1252560 None:intergenic 25.0%
!!! CTCTGAAATAATTCTTATGA+TGG - chr2_1:1252539-1252558 Msa0186540:three_prime_UTR 25.0%
! ATGACTAACATTCTAACAAA+AGG + chr2_1:1252693-1252712 None:intergenic 25.0%
! TAGAATGTTAGTCATAATCT+TGG - chr2_1:1252698-1252717 Msa0186540:three_prime_UTR 25.0%
! ATAATCTTGGATGTGAAAAT+TGG - chr2_1:1252711-1252730 Msa0186540:three_prime_UTR 25.0%
!!! AGTCTGAGATATTTTTATAG+AGG + chr2_1:1252873-1252892 None:intergenic 25.0%
! AATTGAATAGAAAAGAGTCA+CGG + chr2_1:1252902-1252921 None:intergenic 25.0%
! ATGATTATAAGATGATTCAG+AGG + chr2_1:1252961-1252980 None:intergenic 25.0%
!!! TTTTTTTGGTTGAACTCATA+TGG - chr2_1:1252993-1253012 Msa0186540:three_prime_UTR 25.0%
!!! TTTTTTGGTTGAACTCATAT+GGG - chr2_1:1252994-1253013 Msa0186540:three_prime_UTR 25.0%
! TTGTCAATTGAGTTATTTGT+CGG - chr2_1:1253099-1253118 Msa0186540:three_prime_UTR 25.0%
!! ACAACTTTCTTTGAGAATAT+TGG + chr2_1:1253272-1253291 None:intergenic 25.0%
! TTCCTAGAGTAGTATAAATA+AGG + chr2_1:1253345-1253364 None:intergenic 25.0%
!! TTATTTATACTACTCTAGGA+AGG - chr2_1:1253344-1253363 Msa0186540:CDS 25.0%
!!! TAGATATTTCGAGTTTGTAA+TGG + chr2_1:1253374-1253393 None:intergenic 25.0%
! TAGAAACAAAGAAAAGTCTA+TGG - chr2_1:1253392-1253411 Msa0186540:intron 25.0%
! ACATTACTAAATAAGCACTA+GGG + chr2_1:1253464-1253483 None:intergenic 25.0%
! AGTATAATATAGAAGTCTCT+AGG + chr2_1:1253516-1253535 None:intergenic 25.0%
! GAGACTTCTATATTATACTT+TGG - chr2_1:1253517-1253536 Msa0186540:intron 25.0%
! GAGAATGATGAAGAATAATA+TGG + chr2_1:1253587-1253606 None:intergenic 25.0%
!!! AACTTTGTTTTATCCTTGAA+TGG - chr2_1:1254320-1254339 Msa0186540:intron 25.0%
!! CCAATATATGATGATGAATA+CGG + chr2_1:1254897-1254916 None:intergenic 25.0%
! ATTTACGATGAAGAATATGT+TGG + chr2_1:1254963-1254982 None:intergenic 25.0%
! ACATATTCTTCATCGTAAAT+TGG - chr2_1:1254963-1254982 Msa0186540:intron 25.0%
! GAAATTCATGAATCATTTGA+AGG + chr2_1:1255005-1255024 None:intergenic 25.0%
!!! AAATTGGCTTGATAATAATG+AGG - chr2_1:1255287-1255306 Msa0186540:intron 25.0%
!!! TCTTTACTTTTTTTCCCTTA+TGG - chr2_1:1255444-1255463 Msa0186540:intron 25.0%
! TGAACATGTATTTGAGTATA+AGG + chr2_1:1255475-1255494 None:intergenic 25.0%
!!! GTTGTCGATGATTTTTTTTT+TGG - chr2_1:1255780-1255799 Msa0186540:intron 25.0%
! TTCCTAGAGTAGTATAAATA+AGG + chr2_1:1253345-1253364 None:intergenic 25.0%
!! TTATTTATACTACTCTAGGA+AGG - chr2_1:1253344-1253363 Msa0186540:CDS 25.0%
!!! TAGATATTTCGAGTTTGTAA+TGG + chr2_1:1253374-1253393 None:intergenic 25.0%
! TAGAAACAAAGAAAAGTCTA+TGG - chr2_1:1253392-1253411 Msa0186540:intron 25.0%
! ACATTACTAAATAAGCACTA+GGG + chr2_1:1253464-1253483 None:intergenic 25.0%
! TAGAATACTAGGGAATAATA+AGG + chr2_1:1256367-1256386 None:intergenic 25.0%
! GAGACTTCTATATTATACTT+TGG - chr2_1:1253517-1253536 Msa0186540:intron 25.0%
! GAGAATGATGAAGAATAATA+TGG + chr2_1:1253587-1253606 None:intergenic 25.0%
!! AAACTGATAATGAATTGGTT+TGG + chr2_1:1256536-1256555 None:intergenic 25.0%
!! GAATCAAACTGATAATGAAT+TGG + chr2_1:1256541-1256560 None:intergenic 25.0%
! AGTGTAGTTATTTATGGAAA+AGG + chr2_1:1256563-1256582 None:intergenic 25.0%
! GATTTGAGTGTAGTTATTTA+TGG + chr2_1:1256569-1256588 None:intergenic 25.0%
! AATTATGTGAAAAGATTCCA+GGG + chr2_1:1256591-1256610 None:intergenic 25.0%
!! TTTTCACATAATTCCCTATA+TGG - chr2_1:1256598-1256617 Msa0186540:intron 25.0%
! ATGAGTTTCAATAAGCTAAT+CGG - chr2_1:1256667-1256686 Msa0186540:intron 25.0%
! CTACAAAAAACAATCTTTGT+TGG - chr2_1:1256693-1256712 Msa0186540:intron 25.0%
! CGATAATTATGTCCTTTATT+TGG + chr2_1:1256987-1257006 None:intergenic 25.0%
!! TTGATTAAGTGATAATTTGC+TGG + chr2_1:1257011-1257030 None:intergenic 25.0%
! AGTGTTTAGTTAAAAACTAG+AGG - chr2_1:1257187-1257206 Msa0186540:intron 25.0%
! GTGTTTAGTTAAAAACTAGA+GGG - chr2_1:1257188-1257207 Msa0186540:intron 25.0%
! TGTTTAGTTAAAAACTAGAG+GGG - chr2_1:1257189-1257208 Msa0186540:intron 25.0%
!! TTTTATGGTGTAGTTGTTTA+CGG - chr2_1:1257358-1257377 Msa0186540:intron 25.0%
! GAGTTTCTTATAAAAACTTG+TGG - chr2_1:1257399-1257418 Msa0186540:intron 25.0%
!!! ACTTGTTATATTAGCTTTCT+TGG - chr2_1:1257548-1257567 Msa0186540:intron 25.0%
! AACTATCAAAGTTTGATCTT+GGG - chr2_1:1257735-1257754 Msa0186540:intron 25.0%
! AAGTTGACTAGAGAATATAA+AGG - chr2_1:1257882-1257901 Msa0186540:intron 25.0%
! TTCACATATAAGTTCGTAAA+GGG + chr2_1:1258069-1258088 None:intergenic 25.0%
! TTTCACATATAAGTTCGTAA+AGG + chr2_1:1258070-1258089 None:intergenic 25.0%
! CTTATGATTCATCAATGATA+TGG - chr2_1:1258236-1258255 Msa0186540:intron 25.0%
! AAATTAAACAATAGTTGTGG+TGG - chr2_1:1258260-1258279 Msa0186540:intron 25.0%
!!! TTTTTGTTGTTGTTACAAGA+TGG - chr2_1:1258393-1258412 Msa0186540:intron 25.0%
! TAATCTGAATCTTACTACTA+TGG - chr2_1:1258465-1258484 Msa0186540:intron 25.0%
! AATGCCAATATTTGACAATT+TGG + chr2_1:1258820-1258839 None:intergenic 25.0%
TAAAATCAAAACGACGACTA+TGG + chr2_1:1252100-1252119 Msa0186530:CDS 30.0%
!!! ACATGGGTTAGATTTTGATT+TGG + chr2_1:1252373-1252392 Msa0186530:CDS 30.0%
!!! ACATGGGTTAGATTTTGATT+TGG + chr2_1:1252373-1252392 Msa0186530:CDS 30.0%
GTCAAATTTGTGATTCAGAT+AGG + chr2_1:1252473-1252492 None:intergenic 30.0%
TCTGAATCACAAATTTGACA+TGG - chr2_1:1252474-1252493 Msa0186540:three_prime_UTR 30.0%
!! TTTGGATTGGTATTTCAACA+TGG - chr2_1:1252630-1252649 Msa0186540:three_prime_UTR 30.0%
!! TTGGATTGGTATTTCAACAT+GGG - chr2_1:1252631-1252650 Msa0186540:three_prime_UTR 30.0%
! GTTTAGAATGTTTGAATGAG+AGG - chr2_1:1252788-1252807 Msa0186540:three_prime_UTR 30.0%
TTACAAACCAAAAGTTTCCT+TGG - chr2_1:1252817-1252836 Msa0186540:three_prime_UTR 30.0%
ATTGAATAGAAAAGAGTCAC+GGG + chr2_1:1252901-1252920 None:intergenic 30.0%
!!! TTTTTGGTTGAACTCATATG+GGG - chr2_1:1252995-1253014 Msa0186540:three_prime_UTR 30.0%
CGACAAGAAAAAGCTTAATA+AGG + chr2_1:1253051-1253070 None:intergenic 30.0%
GGTACAATTGTAGAAACTTA+GGG - chr2_1:1253126-1253145 Msa0186540:three_prime_UTR 30.0%
!! AGCCTTATTTATACTACTCT+AGG - chr2_1:1253340-1253359 Msa0186540:CDS 30.0%
GACATTACTAAATAAGCACT+AGG + chr2_1:1253465-1253484 None:intergenic 30.0%
TAGGATACTAGGGAATAATA+AGG + chr2_1:1253497-1253516 None:intergenic 30.0%
ACAGTCAAAATGAAGAAGAA+AGG - chr2_1:1253966-1253985 Msa0186540:intron 30.0%
CAGTCAAAATGAAGAAGAAA+GGG - chr2_1:1253967-1253986 Msa0186540:intron 30.0%
GGATGTGATTAAAATCAAGT+TGG + chr2_1:1254411-1254430 None:intergenic 30.0%
ATACTTGTCACATTCATCTT+GGG + chr2_1:1254499-1254518 None:intergenic 30.0%
GTGTGATGTAAGAAAATGTA+TGG + chr2_1:1254541-1254560 None:intergenic 30.0%
AAAATTAAAGTTGCCGACAA+AGG + chr2_1:1254676-1254695 None:intergenic 30.0%
AGATAGTCTTCGTCATATAT+TGG - chr2_1:1254825-1254844 Msa0186540:intron 30.0%
AATCACTTCATGAATGTTAG+CGG - chr2_1:1254869-1254888 Msa0186540:intron 30.0%
CCGTATTCATCATCATATAT+TGG - chr2_1:1254894-1254913 Msa0186540:intron 30.0%
TATACGATTCACACAATCTA+AGG - chr2_1:1255079-1255098 Msa0186540:intron 30.0%
ACATGAAACGTTTAGGTATA+TGG - chr2_1:1255123-1255142 Msa0186540:intron 30.0%
CATGAAACGTTTAGGTATAT+GGG - chr2_1:1255124-1255143 Msa0186540:intron 30.0%
! TAAATGAGGAAATAGGTTGA+TGG - chr2_1:1255180-1255199 Msa0186540:intron 30.0%
! TTGAGAATCGGTATGATTTT+TGG - chr2_1:1255214-1255233 Msa0186540:intron 30.0%
!! AGTTGGTATGAAGAGTTTTT+AGG - chr2_1:1255248-1255267 Msa0186540:intron 30.0%
AATGAGGAGGTAAATTCTTA+CGG - chr2_1:1255303-1255322 Msa0186540:intron 30.0%
AAAATGAAAAGCAAGTGTGA+AGG + chr2_1:1255374-1255393 None:intergenic 30.0%
TGAAGAAACATGCTTCAATT+TGG + chr2_1:1255409-1255428 None:intergenic 30.0%
ACATGTATTTGAGTATAAGG+AGG + chr2_1:1255472-1255491 None:intergenic 30.0%
! TAGACATTCCAGATTTTGAA+GGG + chr2_1:1255539-1255558 None:intergenic 30.0%
TTTCTCAAAACTTCACTTTG+CGG + chr2_1:1255866-1255885 None:intergenic 30.0%
!! AGCCTTATTTATACTACTCT+AGG - chr2_1:1253340-1253359 Msa0186540:CDS 30.0%
GACATTACTAAATAAGCACT+AGG + chr2_1:1253465-1253484 None:intergenic 30.0%
!! TAGAAGTCTCTAGAATACTA+GGG + chr2_1:1256377-1256396 None:intergenic 30.0%
!! ATAGAAGTCTCTAGAATACT+AGG + chr2_1:1256378-1256397 None:intergenic 30.0%
GAATTATGTGAAAAGATTCC+AGG + chr2_1:1256592-1256611 None:intergenic 30.0%
AATGTTTGTGAGAGAATTCA+TGG + chr2_1:1256638-1256657 None:intergenic 30.0%
TTATTGAAACTCATCAACTC+TGG + chr2_1:1256661-1256680 None:intergenic 30.0%
GAACACAACTTTCAAATCAA+TGG + chr2_1:1256719-1256738 None:intergenic 30.0%
ATCAGGTGTAAACCAAATAA+AGG - chr2_1:1256972-1256991 Msa0186540:intron 30.0%
AGAGACTAATAGTGTTAGAT+AGG - chr2_1:1257122-1257141 Msa0186540:intron 30.0%
ACTAATAGTGTTAGATAGGA+AGG - chr2_1:1257126-1257145 Msa0186540:intron 30.0%
CTAATAGTGTTAGATAGGAA+GGG - chr2_1:1257127-1257146 Msa0186540:intron 30.0%
GTTTAGTTAAAAACTAGAGG+GGG - chr2_1:1257190-1257209 Msa0186540:intron 30.0%
! TGTCATTTAAGAATACCTCA+AGG - chr2_1:1257219-1257238 Msa0186540:intron 30.0%
GTCATTTAAGAATACCTCAA+GGG - chr2_1:1257220-1257239 Msa0186540:intron 30.0%
!! GATGAAATGTGTTATTTGCT+TGG - chr2_1:1257324-1257343 Msa0186540:intron 30.0%
AGACTAATATAAAAGCAAGC+TGG + chr2_1:1257608-1257627 None:intergenic 30.0%
AATTACAAAGCAAGTAAGAC+TGG - chr2_1:1257659-1257678 Msa0186540:intron 30.0%
ATACCACTTTACATTGACAA+TGG + chr2_1:1257714-1257733 None:intergenic 30.0%
CAACTATCAAAGTTTGATCT+TGG - chr2_1:1257734-1257753 Msa0186540:intron 30.0%
TCAATGTAAATGCTCATGAA+TGG + chr2_1:1257809-1257828 None:intergenic 30.0%
GGGAAATTAAACAATAGTTG+TGG - chr2_1:1258257-1258276 Msa0186540:intron 30.0%
ATTATAACAGGAGCAATTTG+GGG + chr2_1:1258528-1258547 None:intergenic 30.0%
GATTATAACAGGAGCAATTT+GGG + chr2_1:1258529-1258548 None:intergenic 30.0%
TGATTATAACAGGAGCAATT+TGG + chr2_1:1258530-1258549 None:intergenic 30.0%
!! CTAAGTGTACTGATTATAAC+AGG + chr2_1:1258540-1258559 None:intergenic 30.0%
TAACGCTACAGAAATGAAAA+AGG - chr2_1:1258713-1258732 Msa0186540:exon 30.0%
AACTAACCACATTCGTTTCT+AGG - chr2_1:1252061-1252080 Msa0186540:three_prime_UTR 35.0%
TTCAAACCTAGAAACGAATG+TGG + chr2_1:1252070-1252089 Msa0186530:CDS 35.0%
AGAGTTTGAATTGGCATACT+TGG + chr2_1:1252298-1252317 Msa0186530:CDS 35.0%
GAATAAATTTGTAGGCAGCT+TGG - chr2_1:1252604-1252623 Msa0186540:three_prime_UTR 35.0%
! AGTGATACCAAGGAAACTTT+TGG + chr2_1:1252827-1252846 None:intergenic 35.0%
!! AAGCTTTTTCTTGTCGATGT+TGG - chr2_1:1253055-1253074 Msa0186540:three_prime_UTR 35.0%
ATTGAGTTATTTGTCGGTGA+CGG - chr2_1:1253105-1253124 Msa0186540:three_prime_UTR 35.0%
CGGTACAATTGTAGAAACTT+AGG - chr2_1:1253125-1253144 Msa0186540:three_prime_UTR 35.0%
! TGTCATTTAAGAATACCTCG+TGG + chr2_1:1253168-1253187 None:intergenic 35.0%
TGACAACAACTTTGACTCTA+TGG - chr2_1:1253221-1253240 Msa0186540:CDS 35.0%
CTCTAGTACATAAGACTAGA+AGG - chr2_1:1253418-1253437 Msa0186540:intron 35.0%
!! TAGAAGTCTCTAGGATACTA+GGG + chr2_1:1253507-1253526 None:intergenic 35.0%
!! ATAGAAGTCTCTAGGATACT+AGG + chr2_1:1253508-1253527 None:intergenic 35.0%
! AACAAGAAAATCTTGACTCG+AGG + chr2_1:1253641-1253660 None:intergenic 35.0%
!! TATTCTGAAATCTTGACTCG+AGG + chr2_1:1253667-1253686 None:intergenic 35.0%
! AGAACAGAGATGAGATTTTG+TGG + chr2_1:1253925-1253944 None:intergenic 35.0%
GATTAGAGATCTAGAGATCT+AGG - chr2_1:1254005-1254024 Msa0186540:intron 35.0%
TTGGAACATAGTTGTCAAAG+CGG + chr2_1:1254241-1254260 None:intergenic 35.0%
AAAGCGGAATTCAATCTACT+TGG + chr2_1:1254365-1254384 None:intergenic 35.0%
GATACTTGTCACATTCATCT+TGG + chr2_1:1254500-1254519 None:intergenic 35.0%
TGAATGTGACAAGTATCCAT+TGG - chr2_1:1254503-1254522 Msa0186540:intron 35.0%
ATGGTGTGATGTTATTCCAA+TGG + chr2_1:1254522-1254541 None:intergenic 35.0%
TGAATATGGTGAATCTTTGG+AGG + chr2_1:1254799-1254818 None:intergenic 35.0%
TGGTGAATATGGTGAATCTT+TGG + chr2_1:1254802-1254821 None:intergenic 35.0%
AAAGATTCACCATATTCACC+AGG - chr2_1:1254801-1254820 Msa0186540:intron 35.0%
! TGTGAAGTGTTTGAAGAAGA+GGG + chr2_1:1254930-1254949 None:intergenic 35.0%
! TTGTGAAGTGTTTGAAGAAG+AGG + chr2_1:1254931-1254950 None:intergenic 35.0%
TAGTATTCACCATCGTCAAT+GGG + chr2_1:1255061-1255080 None:intergenic 35.0%
ATAGTATTCACCATCGTCAA+TGG + chr2_1:1255062-1255081 None:intergenic 35.0%
CTAAACGTTTCATGTGTCAA+GGG + chr2_1:1255118-1255137 None:intergenic 35.0%
TCTCTTTGATTGTGTTACGT+TGG - chr2_1:1255153-1255172 Msa0186540:intron 35.0%
CTCTTTGATTGTGTTACGTT+GGG - chr2_1:1255154-1255173 Msa0186540:intron 35.0%
TCTTTGATTGTGTTACGTTG+GGG - chr2_1:1255155-1255174 Msa0186540:intron 35.0%
!! AGGAAATAGGTTGATGGATT+AGG - chr2_1:1255186-1255205 Msa0186540:intron 35.0%
!! GGAAATAGGTTGATGGATTA+GGG - chr2_1:1255187-1255206 Msa0186540:intron 35.0%
!! GAAATAGGTTGATGGATTAG+GGG - chr2_1:1255188-1255207 Msa0186540:intron 35.0%
!! GATTAGGGGTTTTTGAGAAT+CGG - chr2_1:1255202-1255221 Msa0186540:intron 35.0%
!! AGAATCGGTATGATTTTTGG+TGG - chr2_1:1255217-1255236 Msa0186540:intron 35.0%
!!! GAATCGGTATGATTTTTGGT+GGG - chr2_1:1255218-1255237 Msa0186540:intron 35.0%
!!! AATCGGTATGATTTTTGGTG+GGG - chr2_1:1255219-1255238 Msa0186540:intron 35.0%
! TTGGCTTGATAATAATGAGG+AGG - chr2_1:1255290-1255309 Msa0186540:intron 35.0%
ATGAGGAGGTAAATTCTTAC+GGG - chr2_1:1255304-1255323 Msa0186540:intron 35.0%
AAAAAGCAAGATCAAGACGT+GGG + chr2_1:1255351-1255370 None:intergenic 35.0%
AGTATAAGGAGGTTCCATAA+GGG + chr2_1:1255461-1255480 None:intergenic 35.0%
AACCAATCCAGAAAATCATC+TGG - chr2_1:1255504-1255523 Msa0186540:intron 35.0%
! AACCAGATGATTTTCTGGAT+TGG + chr2_1:1255509-1255528 None:intergenic 35.0%
! TCTACAACCAGATGATTTTC+TGG + chr2_1:1255514-1255533 None:intergenic 35.0%
TGTAGATTCCCTTCAAAATC+TGG - chr2_1:1255528-1255547 Msa0186540:intron 35.0%
! GTAGACATTCCAGATTTTGA+AGG + chr2_1:1255540-1255559 None:intergenic 35.0%
TGAAAGAAGTTTGCAAGAGA+TGG + chr2_1:1255730-1255749 None:intergenic 35.0%
! CTTCTTTCATTTTGTCTTCG+AGG - chr2_1:1255741-1255760 Msa0186540:intron 35.0%
!!! TTTTTTTTGGGTGAAGATCG+TGG - chr2_1:1255793-1255812 Msa0186540:intron 35.0%
AGTTTGAGCGAAGAAATCAA+CGG + chr2_1:1255922-1255941 None:intergenic 35.0%
TCGCTCAAACTCAAACAAAA+TGG - chr2_1:1255931-1255950 Msa0186540:intron 35.0%
CTCAAACTCAAACAAAATGG+AGG - chr2_1:1255934-1255953 Msa0186540:intron 35.0%
! TGTTAGTTTCGCGAACAAAA+TGG - chr2_1:1255957-1255976 Msa0186540:intron 35.0%
CTTTGTGAAACTTCACTTTG+CGG + chr2_1:1255983-1256002 None:intergenic 35.0%
CTCTAGTACATAAGACTAGA+AGG - chr2_1:1253418-1253437 Msa0186540:intron 35.0%
!! TACGATTTTGATGTTCGAGA+GGG + chr2_1:1256508-1256527 None:intergenic 35.0%
!! TTACGATTTTGATGTTCGAG+AGG + chr2_1:1256509-1256528 None:intergenic 35.0%
AATAACTACACTCAAATCCC+TGG - chr2_1:1256571-1256590 Msa0186540:intron 35.0%
TGAGAGAATTCATGGTGTTT+GGG + chr2_1:1256630-1256649 None:intergenic 35.0%
CAACGTTAAGGGAGATATAT+AGG + chr2_1:1256748-1256767 None:intergenic 35.0%
!! TTTCTTCTTCTTGCTTTTCC+TGG - chr2_1:1256792-1256811 Msa0186540:intron 35.0%
!!! TTTTGTTCGTTTTGCTGTTG+AGG - chr2_1:1256868-1256887 Msa0186540:intron 35.0%
!!! TTTGTTCGTTTTGCTGTTGA+GGG - chr2_1:1256869-1256888 Msa0186540:intron 35.0%
! TTGAGGGTTTTGCAGAATTT+TGG - chr2_1:1256885-1256904 Msa0186540:intron 35.0%
! TGAGGGTTTTGCAGAATTTT+GGG - chr2_1:1256886-1256905 Msa0186540:intron 35.0%
ATCGACAGAAAACTTTGATC+AGG - chr2_1:1256955-1256974 Msa0186540:intron 35.0%
! TGTTTACGGCAATTGATTTC+AGG - chr2_1:1257372-1257391 Msa0186540:intron 35.0%
TCTTATAAAAACTTGTGGCG+TGG - chr2_1:1257404-1257423 Msa0186540:intron 35.0%
! TTTACTCTTTGTTGTGTTGC+AGG - chr2_1:1257496-1257515 Msa0186540:intron 35.0%
! TTACTCTTTGTTGTGTTGCA+GGG - chr2_1:1257497-1257516 Msa0186540:intron 35.0%
ATGTGGTGGTCTTTGTAATA+TGG - chr2_1:1257523-1257542 Msa0186540:intron 35.0%
TGTGGTGGTCTTTGTAATAT+GGG - chr2_1:1257524-1257543 Msa0186540:intron 35.0%
CTTCCATTGTCAATGTAAAG+TGG - chr2_1:1257708-1257727 Msa0186540:intron 35.0%
TCCAATTCCAGTAAAAAAGG+CGG + chr2_1:1257780-1257799 None:intergenic 35.0%
CGATCCAATTCCAGTAAAAA+AGG + chr2_1:1257783-1257802 None:intergenic 35.0%
! TTTTTACTGGAATTGGATCG+CGG - chr2_1:1257783-1257802 Msa0186540:intron 35.0%
TACATCCAAACAAGCTTATC+CGG - chr2_1:1257912-1257931 Msa0186540:intron 35.0%
AGATATATGTGACAAGAACC+TGG + chr2_1:1257963-1257982 None:intergenic 35.0%
TAGCTGTGATATTATGCAGA+AGG - chr2_1:1258146-1258165 Msa0186540:intron 35.0%
! ACTACTATGGATTGAAGAAG+TGG - chr2_1:1258478-1258497 Msa0186540:intron 35.0%
! CAAAAAAGCATAGCACAACT+TGG + chr2_1:1258599-1258618 None:intergenic 35.0%
!!! CAAGTTGTGCTATGCTTTTT+TGG - chr2_1:1258597-1258616 Msa0186540:intron 35.0%
AATCAGTATCCACATGAAAC+AGG - chr2_1:1258626-1258645 Msa0186540:CDS 35.0%
ATCAGTATCCACATGAAACA+GGG - chr2_1:1258627-1258646 Msa0186540:CDS 35.0%
CAGGGATAAGCTAATGTTAT+TGG - chr2_1:1258645-1258664 Msa0186540:CDS 35.0%
CTACAGAAATGAAAAAGGTC+AGG - chr2_1:1258718-1258737 Msa0186540:exon 35.0%
AATTCAGATACACCAGCAAA+TGG + chr2_1:1258797-1258816 None:intergenic 35.0%
GTTATCATGGTATTGCTCCT+GGG + chr2_1:1252168-1252187 Msa0186530:CDS 40.0%
AAGATTCGATCGCGTTATCA+TGG + chr2_1:1252181-1252200 Msa0186530:CDS 40.0%
AGATTCGATCCAAACATGAC+TGG - chr2_1:1252223-1252242 Msa0186540:three_prime_UTR 40.0%
GATTCGATCCAAACATGACT+GGG - chr2_1:1252224-1252243 Msa0186540:three_prime_UTR 40.0%
GGAAGAAGTAGAAGAGAAGA+AGG + chr2_1:1252259-1252278 Msa0186530:CDS 40.0%
!! CTTGGAAGTGTTGGTGATAT+TGG + chr2_1:1252280-1252299 Msa0186530:CDS 40.0%
! ATTGGCATACTTGGAAGTGT+TGG + chr2_1:1252289-1252308 Msa0186530:CDS 40.0%
CATTTAAGAATACCTCGTGG+AGG + chr2_1:1253165-1253184 None:intergenic 40.0%
AACTTTGACTCTATGGCTCA+GGG - chr2_1:1253228-1253247 Msa0186540:CDS 40.0%
CTTGACTATCCCAAAACACT+AGG - chr2_1:1253312-1253331 Msa0186540:CDS 40.0%
TCATTCTCTATCATTCTCCC+CGG - chr2_1:1253599-1253618 Msa0186540:intron 40.0%
AACAGAGCCTTGGAATACTT+TGG + chr2_1:1253705-1253724 None:intergenic 40.0%
GCTTTGACAACTATGTTCCA+AGG - chr2_1:1254240-1254259 Msa0186540:intron 40.0%
!! GTTGGAACTGATTTTGTCCT+TGG + chr2_1:1254260-1254279 None:intergenic 40.0%
! ACCACTCAATGATGGAAAAG+CGG + chr2_1:1254381-1254400 None:intergenic 40.0%
CAAAACCTACACTTTCGTGA+AGG + chr2_1:1254432-1254451 None:intergenic 40.0%
!! CTTCACGAAAGTGTAGGTTT+TGG - chr2_1:1254430-1254449 Msa0186540:intron 40.0%
GATCGTCATGCATTATTCGA+GGG + chr2_1:1254461-1254480 None:intergenic 40.0%
TGATCGTCATGCATTATTCG+AGG + chr2_1:1254462-1254481 None:intergenic 40.0%
ATGGCTCGATAAGGATAATG+AGG + chr2_1:1254628-1254647 None:intergenic 40.0%
TAGTCTACAATGGCTCGATA+AGG + chr2_1:1254637-1254656 None:intergenic 40.0%
CATTGTAGACTACATGGATG+CGG - chr2_1:1254645-1254664 Msa0186540:intron 40.0%
ATTGTAGACTACATGGATGC+GGG - chr2_1:1254646-1254665 Msa0186540:intron 40.0%
GACATTACAAACCATGTCTC+TGG - chr2_1:1254746-1254765 Msa0186540:intron 40.0%
GACTATCTTCCTGGTGAATA+TGG + chr2_1:1254813-1254832 None:intergenic 40.0%
TATGACGAAGACTATCTTCC+TGG + chr2_1:1254822-1254841 None:intergenic 40.0%
TCATTTGAAGGAGAGTCGAT+GGG + chr2_1:1254993-1255012 None:intergenic 40.0%
ATCATTTGAAGGAGAGTCGA+TGG + chr2_1:1254994-1255013 None:intergenic 40.0%
AGTATTCACCATCGTCAATG+GGG + chr2_1:1255060-1255079 None:intergenic 40.0%
CCTAAACGTTTCATGTGTCA+AGG + chr2_1:1255119-1255138 None:intergenic 40.0%
CCTTGACACATGAAACGTTT+AGG - chr2_1:1255116-1255135 Msa0186540:intron 40.0%
TGGGGTCTAAATGAGGAAAT+AGG - chr2_1:1255173-1255192 Msa0186540:intron 40.0%
!!! ATCGGTATGATTTTTGGTGG+GGG - chr2_1:1255220-1255239 Msa0186540:intron 40.0%
GAAAAAGCAAGATCAAGACG+TGG + chr2_1:1255352-1255371 None:intergenic 40.0%
TGAAGCATGTTTCTTCAGCT+TGG - chr2_1:1255412-1255431 Msa0186540:intron 40.0%
GAGTATAAGGAGGTTCCATA+AGG + chr2_1:1255462-1255481 None:intergenic 40.0%
AGATTCGAAGATGATGTCTC+CGG + chr2_1:1255630-1255649 None:intergenic 40.0%
! TCCTTTGTTGTGCTTCCAAA+AGG - chr2_1:1255649-1255668 Msa0186540:intron 40.0%
! CCTTTGTTGTGCTTCCAAAA+GGG - chr2_1:1255650-1255669 Msa0186540:intron 40.0%
TGCAAGAGATGGAAGAAATG+AGG + chr2_1:1255719-1255738 None:intergenic 40.0%
! CTTTCATTTTGTCTTCGAGG+TGG - chr2_1:1255744-1255763 Msa0186540:intron 40.0%
CGCAAAGTGAAGTTTCACAA+AGG - chr2_1:1255981-1256000 Msa0186540:intron 40.0%
!!! AGTGAGTTTTCAAGTGAGCA+AGG + chr2_1:1256012-1256031 None:intergenic 40.0%
CTTGACTATCCCAAAACACT+AGG - chr2_1:1253312-1253331 Msa0186540:CDS 40.0%
GTTTGGGAGAGATCCATATA+GGG + chr2_1:1256614-1256633 None:intergenic 40.0%
TGTTTGGGAGAGATCCATAT+AGG + chr2_1:1256615-1256634 None:intergenic 40.0%
GTGAGAGAATTCATGGTGTT+TGG + chr2_1:1256631-1256650 None:intergenic 40.0%
CTTTCCAAATTCCACACCTA+GGG + chr2_1:1256829-1256848 None:intergenic 40.0%
ACTTTCCAAATTCCACACCT+AGG + chr2_1:1256830-1256849 None:intergenic 40.0%
TAGGTGTGGAATTTGGAAAG+TGG - chr2_1:1256829-1256848 Msa0186540:intron 40.0%
TCTCTCTTATCCATACTGCT+GGG + chr2_1:1257060-1257079 None:intergenic 40.0%
TTCTCTCTTATCCATACTGC+TGG + chr2_1:1257061-1257080 None:intergenic 40.0%
TAAGAGAGAATGTGAGTGTG+AGG - chr2_1:1257071-1257090 Msa0186540:intron 40.0%
AGTGTGAGGATGAGTGAAAT+TGG - chr2_1:1257085-1257104 Msa0186540:intron 40.0%
ATAGTGTTAGATAGGAAGGG+AGG - chr2_1:1257130-1257149 Msa0186540:intron 40.0%
AATTACACTCACTTCCCTTG+AGG + chr2_1:1257237-1257256 None:intergenic 40.0%
!!! ACCGCCTTTTTTACTGGAAT+TGG - chr2_1:1257776-1257795 Msa0186540:intron 40.0%
TTCAATGACGAATGAGAAGC+TGG + chr2_1:1257833-1257852 None:intergenic 40.0%
TTCTCTAGTCAACTTGCGAT+AGG + chr2_1:1257877-1257896 None:intergenic 40.0%
GTGAAAGTTCGAATACTACC+AGG - chr2_1:1258084-1258103 Msa0186540:intron 40.0%
TGTAAAACCCTAGCAAATGC+TGG - chr2_1:1258347-1258366 Msa0186540:intron 40.0%
! TGATTTGCCAGCATTTGCTA+GGG + chr2_1:1258357-1258376 None:intergenic 40.0%
!! TTGATTTGCCAGCATTTGCT+AGG + chr2_1:1258358-1258377 None:intergenic 40.0%
GCACAACTTGGTATCTAAAC+TGG + chr2_1:1258587-1258606 None:intergenic 40.0%
TAGCTTATCCCTGTTTCATG+TGG + chr2_1:1258638-1258657 None:intergenic 40.0%
GTTACCATTCTTGCCAAGTT+TGG + chr2_1:1258697-1258716 None:intergenic 40.0%
ATAGCCTTCAGAAGTCTCTT+CGG + chr2_1:1258747-1258766 None:intergenic 40.0%
GTTCGTGCTTATAGAGAGAG+AGG - chr2_1:1252141-1252160 Msa0186540:three_prime_UTR 45.0%
CGTTATCATGGTATTGCTCC+TGG + chr2_1:1252169-1252188 Msa0186530:CDS 45.0%
AGAAGAGAAGAAGGAGACAG+AGG + chr2_1:1252250-1252269 Msa0186530:CDS 45.0%
TTGTAGGCAGCTTGGTTGTT+TGG - chr2_1:1252612-1252631 Msa0186540:three_prime_UTR 45.0%
GGTTGAACTCATATGGGGTA+AGG - chr2_1:1253000-1253019 Msa0186540:three_prime_UTR 45.0%
TGAACTCATATGGGGTAAGG+AGG - chr2_1:1253003-1253022 Msa0186540:three_prime_UTR 45.0%
GAACTCATATGGGGTAAGGA+GGG - chr2_1:1253004-1253023 Msa0186540:three_prime_UTR 45.0%
AAATTACACTCACCTCCACG+AGG - chr2_1:1253150-1253169 Msa0186540:three_prime_UTR 45.0%
CAACTTTGACTCTATGGCTC+AGG - chr2_1:1253227-1253246 Msa0186540:CDS 45.0%
GACTATCCCAAAACACTAGG+TGG - chr2_1:1253315-1253334 Msa0186540:CDS 45.0%
CATTCTCTATCATTCTCCCC+GGG - chr2_1:1253600-1253619 Msa0186540:intron 45.0%
! GCAGAGTCCAAAGTATTCCA+AGG - chr2_1:1253695-1253714 Msa0186540:intron 45.0%
CAAGGCTCTGTTGTCAATAG+CGG - chr2_1:1253713-1253732 Msa0186540:intron 45.0%
TTGTCAATAGCGGTCTAACG+CGG - chr2_1:1253723-1253742 Msa0186540:intron 45.0%
AGGCAAAAGCGGAACAAAAG+CGG - chr2_1:1253811-1253830 Msa0186540:intron 45.0%
TAGTTGTCAAAGCGGAAACG+CGG + chr2_1:1254233-1254252 None:intergenic 45.0%
! TCAGTTCCAACATTTTCCCG+AGG - chr2_1:1254269-1254288 Msa0186540:intron 45.0%
ACTCGCAAAGGAACCATTCA+AGG + chr2_1:1254336-1254355 None:intergenic 45.0%
ACTTGGACTTTCACTCGCAA+AGG + chr2_1:1254348-1254367 None:intergenic 45.0%
!! TCCGCTTTTCCATCATTGAG+TGG - chr2_1:1254377-1254396 Msa0186540:intron 45.0%
GCACTTCTACCACTCAATGA+TGG + chr2_1:1254389-1254408 None:intergenic 45.0%
! CACATCCTTCACGAAAGTGT+AGG - chr2_1:1254424-1254443 Msa0186540:intron 45.0%
GCATGACGATCATATTGCCA+AGG - chr2_1:1254470-1254489 Msa0186540:intron 45.0%
CTTGTCACATTCATCTTGGG+AGG + chr2_1:1254496-1254515 None:intergenic 45.0%
TCGAGCCATTGTAGACTACA+TGG - chr2_1:1254639-1254658 Msa0186540:intron 45.0%
CGCATCCATGTAGTCTACAA+TGG + chr2_1:1254647-1254666 None:intergenic 45.0%
AACAACAATCGCCAGAGACA+TGG + chr2_1:1254760-1254779 None:intergenic 45.0%
GTTTATCTCCCCATTGACGA+TGG - chr2_1:1255049-1255068 Msa0186540:intron 45.0%
CGTTTCATGTGTCAAGGGTA+TGG + chr2_1:1255113-1255132 None:intergenic 45.0%
GTTACGTTGGGGTCTAAATG+AGG - chr2_1:1255166-1255185 Msa0186540:intron 45.0%
! TTTTGGTGGGGGAAAGAAGT+TGG - chr2_1:1255231-1255250 Msa0186540:intron 45.0%
AGATGATGAAGAGTCCCTAC+CGG - chr2_1:1255608-1255627 Msa0186540:intron 45.0%
!! CCCTTTTGGAAGCACAACAA+AGG + chr2_1:1255653-1255672 None:intergenic 45.0%
! TGCTTCCAAAAGGGCTTGTT+GGG - chr2_1:1255659-1255678 Msa0186540:intron 45.0%
!! TCGAGGTGGCATTTTGACAA+TGG - chr2_1:1255758-1255777 Msa0186540:intron 45.0%
!!! TTTTTGGGTGAAGATCGTGG+CGG - chr2_1:1255796-1255815 Msa0186540:intron 45.0%
! GTGTTAGCTTCGCGAACAAA+TGG - chr2_1:1255840-1255859 Msa0186540:intron 45.0%
AAGAGCTGGTTACGATACCT+CGG + chr2_1:1256065-1256084 None:intergenic 45.0%
ACCAGCTCTTATGCCAAATC+TGG - chr2_1:1256075-1256094 Msa0186540:intron 45.0%
! TCTTATGCCAAATCTGGCTC+AGG - chr2_1:1256081-1256100 Msa0186540:intron 45.0%
! CTTATGCCAAATCTGGCTCA+GGG - chr2_1:1256082-1256101 Msa0186540:intron 45.0%
! TTTTGTCCCTGAGCCAGATT+TGG + chr2_1:1256091-1256110 None:intergenic 45.0%
! AAATCTGGCTCAGGGACAAA+AGG - chr2_1:1256090-1256109 Msa0186540:intron 45.0%
GACTATCCCAAAACACTAGG+TGG - chr2_1:1253315-1253334 Msa0186540:CDS 45.0%
!!! AGTTTTGAGTTCCCTAGGTG+TGG - chr2_1:1256815-1256834 Msa0186540:intron 45.0%
AGTTCCCTAGGTGTGGAATT+TGG - chr2_1:1256822-1256841 Msa0186540:intron 45.0%
GTAAAGATTGCCCAGCAGTA+TGG - chr2_1:1257047-1257066 Msa0186540:intron 45.0%
GTGAGGATGAGTGAAATTGG+AGG - chr2_1:1257088-1257107 Msa0186540:intron 45.0%
!! CTTTGGGTTGCATGATACGA+TGG - chr2_1:1257457-1257476 Msa0186540:intron 45.0%
CAAAGCAAGTAAGACTGGCA+AGG - chr2_1:1257664-1257683 Msa0186540:intron 45.0%
TGGCAAGGAAGAAGAAACGA+AGG - chr2_1:1257679-1257698 Msa0186540:intron 45.0%
AAAAAAGGCGGTGAGAGAGA+AGG + chr2_1:1257768-1257787 None:intergenic 45.0%
!!! TCTCTCACCGCCTTTTTTAC+TGG - chr2_1:1257770-1257789 Msa0186540:intron 45.0%
TCCAAACAAGCTTATCCGGT+TGG - chr2_1:1257916-1257935 Msa0186540:intron 45.0%
! TCCAACCGGATAAGCTTGTT+TGG + chr2_1:1257920-1257939 None:intergenic 45.0%
AAACAAGCTTATCCGGTTGG+AGG - chr2_1:1257919-1257938 Msa0186540:intron 45.0%
TAAGTTACACCACCTCCAAC+CGG + chr2_1:1257934-1257953 None:intergenic 45.0%
TGGTGTAACTTAGTTGTGCC+AGG - chr2_1:1257942-1257961 Msa0186540:intron 45.0%
TCTTTACACAAGAGTTCGCC+TGG + chr2_1:1258105-1258124 None:intergenic 45.0%
TGCTGGCAAATCAATGTCTG+CGG - chr2_1:1258364-1258383 Msa0186540:intron 45.0%
!! ATTTGGGGCATTGTAGCACT+GGG + chr2_1:1258513-1258532 None:intergenic 45.0%
!! AATTTGGGGCATTGTAGCAC+TGG + chr2_1:1258514-1258533 None:intergenic 45.0%
TGGTATCTAAACTGGACGCT+AGG + chr2_1:1258579-1258598 None:intergenic 45.0%
AATGGAACAGACCTTGTCCA+AGG + chr2_1:1258779-1258798 None:intergenic 45.0%
ACAAGGTCTGTTCCATTTGC+TGG - chr2_1:1258782-1258801 Msa0186540:five_prime_UTR 45.0%
!! AATAAAAAAATAAAATACAT+GGG + chr2_1:1252435-1252454 None:intergenic 5.0%
!! AAATAAAAAAATAAAATACA+TGG + chr2_1:1252436-1252455 None:intergenic 5.0%
CTTATAGAGAGAGAGGACCC+AGG - chr2_1:1252148-1252167 Msa0186540:three_prime_UTR 50.0%
GGCAGCTTGGTTGTTTGGAT+TGG - chr2_1:1252617-1252636 Msa0186540:three_prime_UTR 50.0%
ATATGGGGTAAGGAGGGTGA+AGG - chr2_1:1253010-1253029 Msa0186540:three_prime_UTR 50.0%
! GGCTCACCACCTAGTGTTTT+GGG + chr2_1:1253324-1253343 None:intergenic 50.0%
! AGGCTCACCACCTAGTGTTT+TGG + chr2_1:1253325-1253344 None:intergenic 50.0%
CGCTATTGACAACAGAGCCT+TGG + chr2_1:1253715-1253734 None:intergenic 50.0%
GGCAAAAGCGGAACAAAAGC+GGG - chr2_1:1253812-1253831 Msa0186540:intron 50.0%
! GTTCCAACATTTTCCCGAGG+TGG - chr2_1:1254272-1254291 Msa0186540:intron 50.0%
AAGCCACCTCGGGAAAATGT+TGG + chr2_1:1254278-1254297 None:intergenic 50.0%
! ACATTTTCCCGAGGTGGCTT+AGG - chr2_1:1254278-1254297 Msa0186540:intron 50.0%
ACATTCATCTTGGGAGGCCT+TGG + chr2_1:1254490-1254509 None:intergenic 50.0%
CGAAGATGATGTCTCCGGTA+GGG + chr2_1:1255625-1255644 None:intergenic 50.0%
TCGAAGATGATGTCTCCGGT+AGG + chr2_1:1255626-1255645 None:intergenic 50.0%
GTGCTTCCAAAAGGGCTTGT+TGG - chr2_1:1255658-1255677 Msa0186540:intron 50.0%
! CAATGCCCAACAAGCCCTTT+TGG + chr2_1:1255667-1255686 None:intergenic 50.0%
!! GTGCGTGGTTGTTTTGTCGA+TGG - chr2_1:1255818-1255837 Msa0186540:intron 50.0%
GCCAGATTTGGCATAAGAGC+TGG + chr2_1:1256079-1256098 None:intergenic 50.0%
TGGCTCAGGGACAAAAGGTA+AGG - chr2_1:1256095-1256114 Msa0186540:intron 50.0%
! GGCTCACCACCTAGTGTTTT+GGG + chr2_1:1253324-1253343 None:intergenic 50.0%
! AGGCTCACCACCTAGTGTTT+TGG + chr2_1:1253325-1253344 None:intergenic 50.0%
CGAGAGGGAAGAGATTGAAG+AGG + chr2_1:1256493-1256512 None:intergenic 50.0%
CCTAGGGAACTCAAAACTCC+AGG + chr2_1:1256813-1256832 None:intergenic 50.0%
!!! CCTGGAGTTTTGAGTTCCCT+AGG - chr2_1:1256810-1256829 Msa0186540:intron 50.0%
TGCTGGGCAATCTTTACTCG+TGG + chr2_1:1257044-1257063 None:intergenic 50.0%
! CTCTTTGTTGTGTTGCAGGG+TGG - chr2_1:1257500-1257519 Msa0186540:intron 50.0%
GTAGAGCAACTCCTCCAATG+AGG - chr2_1:1258667-1258686 Msa0186540:CDS 50.0%
CCATTCTTGCCAAGTTTGGC+AGG + chr2_1:1258693-1258712 None:intergenic 50.0%
CCTGCCAAACTTGGCAAGAA+TGG - chr2_1:1258690-1258709 Msa0186540:CDS 50.0%
AAGGCTATTCGAAGCCACCT+TGG - chr2_1:1258759-1258778 Msa0186540:five_prime_UTR 50.0%
ATTCGAAGCCACCTTGGACA+AGG - chr2_1:1258765-1258784 Msa0186540:five_prime_UTR 50.0%
GACAGAGGCCCAGTCATGTT+TGG + chr2_1:1252235-1252254 Msa0186530:CDS 55.0%
CTCTATCATTCTCCCCGGGT+TGG - chr2_1:1253604-1253623 Msa0186540:intron 55.0%
AGGACGAGTCTCTTCCAACC+CGG + chr2_1:1253621-1253640 None:intergenic 55.0%
! CTTTTGCCTAACGCGCGACT+CGG + chr2_1:1253800-1253819 None:intergenic 55.0%
AGTCGCGCGTTAGGCAAAAG+CGG - chr2_1:1253800-1253819 Msa0186540:intron 55.0%
GGGCAAAAAGCGGGTCAATG+CGG - chr2_1:1253842-1253861 Msa0186540:intron 55.0%
GGCAAAAAGCGGGTCAATGC+GGG - chr2_1:1253843-1253862 Msa0186540:intron 55.0%
! TACCGCGCCGCGTCAATTTT+TGG - chr2_1:1254192-1254211 Msa0186540:intron 55.0%
! ACCGCGCCGCGTCAATTTTT+GGG - chr2_1:1254193-1254212 Msa0186540:intron 55.0%
GGCCACCCCAAAAATTGACG+CGG + chr2_1:1254202-1254221 None:intergenic 55.0%
TCCAGTTCCTAAGCCACCTC+GGG + chr2_1:1254288-1254307 None:intergenic 55.0%
GTCCAGTTCCTAAGCCACCT+CGG + chr2_1:1254289-1254308 None:intergenic 55.0%
GTTGTGTTGCAGGGTGGATG+TGG - chr2_1:1257506-1257525 Msa0186540:intron 55.0%
CAAGCTTATCCGGTTGGAGG+TGG - chr2_1:1257922-1257941 Msa0186540:intron 55.0%
ACTGGACGCTAGGAGCAGTT+GGG + chr2_1:1258569-1258588 None:intergenic 55.0%
AACTGGACGCTAGGAGCAGT+TGG + chr2_1:1258570-1258589 None:intergenic 55.0%
AGTTTGGCAGGCCTCATTGG+AGG + chr2_1:1258681-1258700 None:intergenic 55.0%
CCAAGTTTGGCAGGCCTCAT+TGG + chr2_1:1258684-1258703 None:intergenic 55.0%
CCAATGAGGCCTGCCAAACT+TGG - chr2_1:1258681-1258700 Msa0186540:CDS 55.0%
GCAGCCGAAGAGACTTCTGA+AGG - chr2_1:1258740-1258759 Msa0186540:five_prime_UTR 55.0%
GGAACAGACCTTGTCCAAGG+TGG + chr2_1:1258776-1258795 None:intergenic 55.0%
GACGAGTCTCTTCCAACCCG+GGG + chr2_1:1253619-1253638 None:intergenic 60.0%
GGACGAGTCTCTTCCAACCC+GGG + chr2_1:1253620-1253639 None:intergenic 60.0%
GGAACAAAAGCGGGTCAGCG+CGG - chr2_1:1253821-1253840 Msa0186540:intron 60.0%
GAACAAAAGCGGGTCAGCGC+GGG - chr2_1:1253822-1253841 Msa0186540:intron 60.0%
AGCGGGTCAATGCGGGCAAA+AGG - chr2_1:1253850-1253869 Msa0186540:intron 60.0%
GGGTCAATGCGGGCAAAAGG+CGG - chr2_1:1253853-1253872 Msa0186540:intron 60.0%
GGTCAATGCGGGCAAAAGGC+GGG - chr2_1:1253854-1253873 Msa0186540:intron 60.0%
GGGTCAACGCGGGCAAAAAG+CGG - chr2_1:1253874-1253893 Msa0186540:intron 60.0%
GGTCAACGCGGGCAAAAAGC+GGG - chr2_1:1253875-1253894 Msa0186540:intron 60.0%
!! ATGTAAAAGCGCCCGCGTCG+CGG - chr2_1:1254164-1254183 Msa0186540:intron 60.0%
AATTGACGCGGCGCGGTAAG+CGG + chr2_1:1254190-1254209 None:intergenic 60.0%
CCCCAAAAATTGACGCGGCG+CGG + chr2_1:1254197-1254216 None:intergenic 60.0%
! CCGCGCCGCGTCAATTTTTG+GGG - chr2_1:1254194-1254213 Msa0186540:intron 60.0%
!! CGCCGCGTCAATTTTTGGGG+TGG - chr2_1:1254197-1254216 Msa0186540:intron 60.0%
TCCCGAGGTGGCTTAGGAAC+TGG - chr2_1:1254284-1254303 Msa0186540:intron 60.0%
GGATGCGGGTGCTCCTTTGT+CGG - chr2_1:1254660-1254679 Msa0186540:intron 60.0%
GTGTTGCAGGGTGGATGTGG+TGG - chr2_1:1257509-1257528 Msa0186540:intron 60.0%
GGGTCAGCGCGGGCAAAAAG+CGG - chr2_1:1253832-1253851 Msa0186540:intron 65.0%
GGTCAGCGCGGGCAAAAAGC+GGG - chr2_1:1253833-1253852 Msa0186540:intron 65.0%
GGGCAAAAGGCGGGTCAACG+CGG - chr2_1:1253863-1253882 Msa0186540:intron 65.0%
GGCAAAAGGCGGGTCAACGC+GGG - chr2_1:1253864-1253883 Msa0186540:intron 65.0%
GTCAAAGCGGAAACGCGGCG+CGG + chr2_1:1254228-1254247 None:intergenic 65.0%
GTGAAGATCGTGGCGGTGCG+TGG - chr2_1:1255803-1255822 Msa0186540:intron 65.0%
GGTCTAACGCGGCGCGATCG+CGG - chr2_1:1253734-1253753 Msa0186540:intron 70.0%
CGGTCGCGTTCTGACGCGCT+AGG + chr2_1:1253780-1253799 None:intergenic 70.0%
ACGCGACCGAGTCGCGCGTT+AGG - chr2_1:1253791-1253810 Msa0186540:intron 70.0%
! AACGCGGCGCGATCGCGGCG+CGG - chr2_1:1253739-1253758 Msa0186540:intron 80.0%
! GCGGTAAGCGGCCGCGACGC+GGG + chr2_1:1254178-1254197 None:intergenic 80.0%
! CGCGGTAAGCGGCCGCGACG+CGG + chr2_1:1254179-1254198 None:intergenic 80.0%
! AGCGGAAACGCGGCGCGGCG+CGG + chr2_1:1254223-1254242 None:intergenic 80.0%
! GGCGCGATCGCGGCGCGGAG+CGG - chr2_1:1253744-1253763 Msa0186540:intron 85.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 1252056 1258851 1252056 ID=Msa0186540;Name=Msa0186540
chr2_1 mRNA 1252056 1258851 1252056 ID=Msa0186540-mRNA-1;Parent=Msa0186540;Name=Msa0186540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=124|1|1|1|0|1|2|1126|108
chr2_1 exon 1252056 1253389 1252056 ID=Msa0186540-mRNA-1:exon:548;Parent=Msa0186540-mRNA-1
chr2_1 exon 1258609 1258851 1258609 ID=Msa0186540-mRNA-1:exon:547;Parent=Msa0186540-mRNA-1
chr2_1 five_prime_UTR 1258728 1258851 1258728 ID=Msa0186540-mRNA-1:five_prime_utr;Parent=Msa0186540-mRNA-1
chr2_1 CDS 1258609 1258727 1258609 ID=Msa0186540-mRNA-1:cds;Parent=Msa0186540-mRNA-1
chr2_1 CDS 1253182 1253389 1253182 ID=Msa0186540-mRNA-1:cds;Parent=Msa0186540-mRNA-1
chr2_1 three_prime_UTR 1252056 1253181 1252056 ID=Msa0186540-mRNA-1:three_prime_utr;Parent=Msa0186540-mRNA-1
Gene Sequence

>Msa0186540

ATGATAACGCGATCGAATCTTGCAGAACAGCTGCGAGATTATCAGATTCGATCCAAACATGACTGGGCCTCTGTCTCCTTCTTCTCTTCTACTTCTTCCAATATCACCAACACTTCCAAGGTGGATGTGGTGGTCTTTGTAATATGGGAACTTGTTATATTAGCTTTCTTGGTTTTTTCAGTTGTTTCTTTGTACTTTAAGCACATCCAGCTTGCTTTTATATTAGTCTGCATCACAGTGCTTTTGCTTTTATGCATGAAAATTACAAAGCAAGTAAGACTGGCAAGGAAGAAGAAACGAAGGATGCTTCTTCCATTGTCAATGTAA
Protein sequence

>Msa0186540

MITRSNLAEQLRDYQIRSKHDWASVSFFSSTSSNITNTSKVDVVVFVIWELVILAFLVFSVVSLYFKHIQLAFILVCITVLLLLCMKITKQVRLARKKKRRMLLPLSM*