Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397780 | XP_013464337.3 | 79.487 | 78 | 4 | 1 | 1 | 78 | 312 | 377 | 7.26e-28 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397780 | sp|F4IBQ9|KN14Q_ARATH | 48.052 | 77 | 28 | 1 | 2 | 78 | 428 | 492 | 2.36e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397780 | A0A072V9B7 | 79.487 | 78 | 4 | 1 | 1 | 78 | 268 | 333 | 4.11e-28 | 120 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0397780 | Msa0399410 | 0.842962 | 1.876321e-58 | -8.615850e-47 |
| Msa0397780 | Msa0461160 | 0.810282 | 1.245592e-50 | -8.615850e-47 |
| Msa0397780 | Msa0493000 | 0.815095 | 1.101903e-51 | -8.615850e-47 |
| Msa0397780 | Msa0508110 | 0.800175 | 1.630548e-48 | -8.615850e-47 |
| Msa0397780 | Msa0927290 | 0.805175 | 1.515415e-49 | -8.615850e-47 |
| Msa0397780 | Msa0967280 | 0.831363 | 1.741243e-55 | -8.615850e-47 |
| Msa0397780 | Msa0985620 | 0.805269 | 1.448618e-49 | -8.615850e-47 |
| Msa0397780 | Msa0985630 | 0.834848 | 2.364106e-56 | -8.615850e-47 |
| Msa0397780 | Msa0999120 | 0.867914 | 9.630018e-66 | -8.615850e-47 |
| Msa0397780 | Msa1248300 | 0.820107 | 8.166099e-53 | -8.615850e-47 |
| Msa0351040 | Msa0397780 | 0.900374 | 7.808750e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397780 | MtrunA17_Chr2g0312631 | 79.487 | 78 | 4 | 1 | 1 | 78 | 312 | 377 | 8.93e-32 | 120 |
| Msa0397780 | MtrunA17_Chr2g0312631 | 59.322 | 59 | 21 | 1 | 53 | 108 | 440 | 498 | 2.94e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0397780 | AT1G72250.2 | 48.052 | 77 | 28 | 1 | 2 | 78 | 429 | 493 | 2.40e-12 | 64.7 |
| Msa0397780 | AT1G72250.3 | 48.052 | 77 | 28 | 1 | 2 | 78 | 441 | 505 | 2.43e-12 | 64.7 |
| Msa0397780 | AT1G72250.4 | 48.052 | 77 | 28 | 1 | 2 | 78 | 440 | 504 | 2.45e-12 | 64.7 |
Find 57 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGCACCTTCAATATATT+TGG | 0.109558 | 3_2:+17739099 | None:intergenic |
| TATTGGATAGATTATGAAAA+TGG | 0.171541 | 3_2:-17739362 | Msa0397780:intron |
| TTCTGGGTTGGACCATTTAT+TGG | 0.216605 | 3_2:-17738268 | Msa0397780:CDS |
| GAAATCAAACTTCTTCTTCT+AGG | 0.232915 | 3_2:+17742017 | None:intergenic |
| GCAAGAGCAGCTCCAATAAA+TGG | 0.282926 | 3_2:+17738256 | None:intergenic |
| AGGCTCGAGGAGTAAATTTC+AGG | 0.331803 | 3_2:-17738606 | Msa0397780:CDS |
| TGAAGCAGATATAAGTGAAA+TGG | 0.343836 | 3_2:-17739296 | Msa0397780:CDS |
| CTTTACCAGGGACTTTGCTT+GGG | 0.380297 | 3_2:-17738409 | Msa0397780:CDS |
| CCCGCAGCTTCCGCCTTGAC+AGG | 0.393404 | 3_2:+17740506 | None:intergenic |
| CCCTGTCAAGGCGGAAGCTG+CGG | 0.398513 | 3_2:-17740507 | Msa0397780:five_prime_UTR |
| GAAGCAGATATAAGTGAAAT+GGG | 0.404293 | 3_2:-17739295 | Msa0397780:CDS |
| TCTTTACCAGGGACTTTGCT+TGG | 0.415464 | 3_2:-17738410 | Msa0397780:CDS |
| TCCTGGGATTGTAGTTCAAT+CGG | 0.417359 | 3_2:-17740541 | Msa0397780:intron |
| CCTGTCAAGGCGGAAGCTGC+GGG | 0.419723 | 3_2:-17740506 | Msa0397780:five_prime_UTR |
| CAAGAACACATCAAAATCAA+TGG | 0.436859 | 3_2:+17738454 | None:intergenic |
| GGAACACATGAAGCTGTTAG+AGG | 0.445329 | 3_2:-17739341 | Msa0397780:CDS |
| TTCAGTGCCTTCCATTGTGA+AGG | 0.449536 | 3_2:+17738630 | None:intergenic |
| AGATGGCTCGGATGACAATC+TGG | 0.450464 | 3_2:+17738221 | None:intergenic |
| GATCCTAAGTCGGGACTGAC+GGG | 0.455569 | 3_2:+17740476 | None:intergenic |
| AGCATTTGCTATTGAGAGGC+AGG | 0.456583 | 3_2:-17739525 | Msa0397780:five_prime_UTR |
| TGATGTGTTCTTGGTCCACT+TGG | 0.459222 | 3_2:-17738444 | Msa0397780:CDS |
| GCATATGGACAGACTGGGAC+TGG | 0.484273 | 3_2:-17738658 | Msa0397780:intron |
| GAGCTGCCATCATCTTTACC+AGG | 0.490616 | 3_2:-17738422 | Msa0397780:CDS |
| CTAAAGTCCAAATATATTGA+AGG | 0.490676 | 3_2:-17739106 | Msa0397780:CDS |
| TTCATCAACTTCTACTGCTA+AGG | 0.492881 | 3_2:-17741997 | Msa0397780:five_prime_UTR |
| AAGAACACATCAAAATCAAT+GGG | 0.494981 | 3_2:+17738455 | None:intergenic |
| CTTCTACTGCTAAGGCCTCA+AGG | 0.514374 | 3_2:-17741989 | Msa0397780:five_prime_UTR |
| TTGCAGTGGATATTCTGGGT+TGG | 0.527082 | 3_2:-17738280 | Msa0397780:intron |
| CTAGGCGCCAAGGTTGATTG+TGG | 0.530151 | 3_2:+17742035 | None:intergenic |
| GGATCCTAAGTCGGGACTGA+CGG | 0.542898 | 3_2:+17740475 | None:intergenic |
| ACTTCATCGGATCCTAAGTC+GGG | 0.546738 | 3_2:+17740467 | None:intergenic |
| AATAACAGACAGAACTTCAT+CGG | 0.547194 | 3_2:+17740454 | None:intergenic |
| TTCTACTGCTAAGGCCTCAA+GGG | 0.547303 | 3_2:-17741988 | Msa0397780:intron |
| AAAGTCCCTGGTAAAGATGA+TGG | 0.552855 | 3_2:+17738416 | None:intergenic |
| CCGCAGCTTCCGCCTTGACA+GGG | 0.557971 | 3_2:+17740507 | None:intergenic |
| GTCAGAGCACTGCCCTGTCA+AGG | 0.560241 | 3_2:-17740519 | Msa0397780:five_prime_UTR |
| ACATCAAAATCAATGGGAAG+AGG | 0.565182 | 3_2:+17738461 | None:intergenic |
| ACTTCTTCTTCTAGGCGCCA+AGG | 0.569787 | 3_2:+17742025 | None:intergenic |
| AGACTTGATGAGGAGATTGA+AGG | 0.570449 | 3_2:-17739468 | Msa0397780:intron |
| AGCCCCGTCAGTCCCGACTT+AGG | 0.571206 | 3_2:-17740479 | Msa0397780:five_prime_UTR |
| CAAATATATTGAAGGTGCCA+AGG | 0.571305 | 3_2:-17739098 | Msa0397780:CDS |
| AACTTCATCGGATCCTAAGT+CGG | 0.573003 | 3_2:+17740466 | None:intergenic |
| AAATGAACCACAATCAACCT+TGG | 0.577603 | 3_2:-17742042 | Msa0397780:five_prime_UTR |
| CAAACACAACAGCAGCAAGA+TGG | 0.581074 | 3_2:+17738204 | None:intergenic |
| TTGCAGCATTTGCTATTGAG+AGG | 0.586685 | 3_2:-17739529 | Msa0397780:intron |
| GTCATCCCAAGCAAAGTCCC+TGG | 0.588043 | 3_2:+17738404 | None:intergenic |
| AGGTGAAAGAGAAAAGTAAG+TGG | 0.595653 | 3_2:-17739505 | Msa0397780:five_prime_UTR |
| ACAACAGCAGCAAGATGGCT+CGG | 0.597911 | 3_2:+17738209 | None:intergenic |
| CACAATGGAAGGCACTGAAG+AGG | 0.611605 | 3_2:-17738626 | Msa0397780:CDS |
| TATCACTGAGAGACTTGATG+AGG | 0.620507 | 3_2:-17739478 | Msa0397780:exon |
| AGCTGCCATCATCTTTACCA+GGG | 0.640815 | 3_2:-17738421 | Msa0397780:CDS |
| ATCCTAAGTCGGGACTGACG+GGG | 0.670475 | 3_2:+17740477 | None:intergenic |
| AAGATGATGGCAGCTCCAAG+TGG | 0.676157 | 3_2:+17738429 | None:intergenic |
| GAAGGCACTGAAGAGGCTCG+AGG | 0.685190 | 3_2:-17738619 | Msa0397780:CDS |
| AGAGCACTGCCCTGTCAAGG+CGG | 0.705535 | 3_2:-17740516 | Msa0397780:five_prime_UTR |
| TGGCTCGGATGACAATCTGG+TGG | 0.725105 | 3_2:+17738224 | None:intergenic |
| GAGGACCGCACATACCCTTG+AGG | 0.752520 | 3_2:+17741974 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTCATTTATAAATTTTATAT+GGG | - | chr3_2:17738772-17738791 | Msa0397780:intron | 10.0% |
| !! | AAAAATAAAAAATAAGGTAT+TGG | - | chr3_2:17741207-17741226 | Msa0397780:intron | 10.0% |
| !!! | TAAATTTGTTCATAAAAATA+AGG | + | chr3_2:17741880-17741899 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAAAGAAAGGATA+TGG | + | chr3_2:17738307-17738326 | None:intergenic | 15.0% |
| !!! | TATGGATTTTTTTTAAAGAA+AGG | + | chr3_2:17738313-17738332 | None:intergenic | 15.0% |
| !!! | GCTCATTTATAAATTTTATA+TGG | - | chr3_2:17738771-17738790 | Msa0397780:intron | 15.0% |
| !!! | ATTTTATATTTTAGTTGGAA+GGG | + | chr3_2:17738806-17738825 | None:intergenic | 15.0% |
| !!! | AATTTTATATTTTAGTTGGA+AGG | + | chr3_2:17738807-17738826 | None:intergenic | 15.0% |
| !! | AAATCTTAACATAGTAATTA+TGG | + | chr3_2:17739336-17739355 | None:intergenic | 15.0% |
| !!! | TATCTAATCTAAGAATTTTT+AGG | - | chr3_2:17739658-17739677 | Msa0397780:intron | 15.0% |
| !!! | ATGATATGAAATTTTCTAAA+AGG | - | chr3_2:17740823-17740842 | Msa0397780:intron | 15.0% |
| !!! | AAATTTAAAAGTACTTTTTG+GGG | + | chr3_2:17741365-17741384 | None:intergenic | 15.0% |
| !!! | CAAATTTAAAAGTACTTTTT+GGG | + | chr3_2:17741366-17741385 | None:intergenic | 15.0% |
| !!! | TCAAATTTAAAAGTACTTTT+TGG | + | chr3_2:17741367-17741386 | None:intergenic | 15.0% |
| !! | TTTAAATTTGATGTTATCTT+TGG | - | chr3_2:17741376-17741395 | Msa0397780:intron | 15.0% |
| !! | AAAAAATCCATATATGTTAC+TGG | - | chr3_2:17738321-17738340 | Msa0397780:intron | 20.0% |
| !!! | CAAACATATATACATTTTCA+TGG | + | chr3_2:17738392-17738411 | None:intergenic | 20.0% |
| !! | TATAAATGAGCAAAGATATT+TGG | + | chr3_2:17738762-17738781 | None:intergenic | 20.0% |
| !!! | TTTTATATTTTAGTTGGAAG+GGG | + | chr3_2:17738805-17738824 | None:intergenic | 20.0% |
| !! | TAACATTATATGATAACTTG+AGG | - | chr3_2:17738990-17739009 | Msa0397780:intron | 20.0% |
| !! | ATATTGATACCATACTTTAT+TGG | - | chr3_2:17739257-17739276 | Msa0397780:CDS | 20.0% |
| !!! | TTTTTTATACATGATCATCA+TGG | - | chr3_2:17739364-17739383 | Msa0397780:intron | 20.0% |
| !! | ATTTCTCTTCATTATTCATT+AGG | + | chr3_2:17739629-17739648 | None:intergenic | 20.0% |
| !! | AACCTTTCAATATAAGATAT+GGG | - | chr3_2:17739855-17739874 | Msa0397780:intron | 20.0% |
| !!! | TTATTTTCTAGATTGATACA+TGG | + | chr3_2:17739932-17739951 | None:intergenic | 20.0% |
| !!! | ATAATTTGCTTGCTATTTTA+TGG | - | chr3_2:17740437-17740456 | Msa0397780:intron | 20.0% |
| !!! | AAAATATCAGTGGATATTTT+TGG | + | chr3_2:17740691-17740710 | None:intergenic | 20.0% |
| !!! | AATGTGTTTGTCAATTTTAT+TGG | - | chr3_2:17740861-17740880 | Msa0397780:intron | 20.0% |
| !! | TATTGGATAGATTATGAAAA+TGG | - | chr3_2:17740878-17740897 | Msa0397780:intron | 20.0% |
| !!! | TCAAAAAGAGCTTTATAATA+AGG | - | chr3_2:17741166-17741185 | Msa0397780:intron | 20.0% |
| !! | ATGTTTGATACAGTATTATA+TGG | - | chr3_2:17741669-17741688 | Msa0397780:intron | 20.0% |
| ! | ATGGATTTATAAACTATGAG+AGG | + | chr3_2:17738288-17738307 | None:intergenic | 25.0% |
| ! | GATTAAGAAGTTAAACTCAA+CGG | + | chr3_2:17738499-17738518 | None:intergenic | 25.0% |
| ! | TGTGTTAAGAATATTTGTAG+AGG | + | chr3_2:17738668-17738687 | None:intergenic | 25.0% |
| ! | ATTCTTATTGTATGACAATG+AGG | - | chr3_2:17738960-17738979 | Msa0397780:intron | 25.0% |
| ! | ATATTTAGACCATACTCTAT+TGG | - | chr3_2:17739093-17739112 | Msa0397780:CDS | 25.0% |
| ! | TACCATCATATGATAATTTG+AGG | - | chr3_2:17739158-17739177 | Msa0397780:intron | 25.0% |
| ! | TTCAGCAAACTAATATGATA+AGG | + | chr3_2:17739031-17739050 | None:intergenic | 25.0% |
| ! | ACATAGTAATTATGGACATT+TGG | + | chr3_2:17739328-17739347 | None:intergenic | 25.0% |
| !! | TGTACACTTAATTTTATTCC+TGG | - | chr3_2:17739682-17739701 | Msa0397780:intron | 25.0% |
| !! | GTACACTTAATTTTATTCCT+GGG | - | chr3_2:17739683-17739702 | Msa0397780:intron | 25.0% |
| ! | GAACCTTTCAATATAAGATA+TGG | - | chr3_2:17739854-17739873 | Msa0397780:intron | 25.0% |
| ! | GTTAATAGTGACAGTAATTA+CGG | + | chr3_2:17739910-17739929 | None:intergenic | 25.0% |
| ! | AACTTCAGAAATATAAGCAA+AGG | + | chr3_2:17739971-17739990 | None:intergenic | 25.0% |
| ! | GCATAGAAAGTAAATAACTA+CGG | + | chr3_2:17740126-17740145 | None:intergenic | 25.0% |
| ! | ACATATGATTTCTCTTTACT+TGG | + | chr3_2:17740194-17740213 | None:intergenic | 25.0% |
| ! | AGAGAAATCATATGTATTGT+TGG | - | chr3_2:17740199-17740218 | Msa0397780:intron | 25.0% |
| ! | GAGAAATCATATGTATTGTT+GGG | - | chr3_2:17740200-17740219 | Msa0397780:intron | 25.0% |
| ! | AATTATGGTAACTGAATTGA+AGG | + | chr3_2:17740478-17740497 | None:intergenic | 25.0% |
| ! | ACTTGAGTTTAAATTGTTGA+TGG | - | chr3_2:17740638-17740657 | Msa0397780:intron | 25.0% |
| !! | TCATTCACTCAATTTTTGTT+AGG | + | chr3_2:17740807-17740826 | None:intergenic | 25.0% |
| ! | CTAAAGTCCAAATATATTGA+AGG | - | chr3_2:17741134-17741153 | Msa0397780:intron | 25.0% |
| !! | AGAGCTTTATAATAAGGTAT+TGG | - | chr3_2:17741172-17741191 | Msa0397780:intron | 25.0% |
| !! | ATTCTATCCATCTAAAACTA+AGG | + | chr3_2:17741550-17741569 | None:intergenic | 25.0% |
| !! | AATGTATGCATTTTTGCATA+TGG | - | chr3_2:17741567-17741586 | Msa0397780:intron | 25.0% |
| !!! | TCAATGTGGTTATTGTTTTT+TGG | - | chr3_2:17741737-17741756 | Msa0397780:intron | 25.0% |
| !!! | CAATGTGGTTATTGTTTTTT+GGG | - | chr3_2:17741738-17741757 | Msa0397780:intron | 25.0% |
| !!! | AATGTGGTTATTGTTTTTTG+GGG | - | chr3_2:17741739-17741758 | Msa0397780:intron | 25.0% |
| ! | AAGAACACATCAAAATCAAT+GGG | + | chr3_2:17741788-17741807 | None:intergenic | 25.0% |
| !!! | TTATTGATGATATTTTGCAG+TGG | - | chr3_2:17741946-17741965 | Msa0397780:intron | 25.0% |
| ! | TGTGGTTCATTTTATGATGA+TGG | + | chr3_2:17738190-17738209 | None:intergenic | 30.0% |
| GAAATCAAACTTCTTCTTCT+AGG | + | chr3_2:17738226-17738245 | None:intergenic | 30.0% | |
| ATCATGTTTGTTTCAGCTTT+CGG | - | chr3_2:17738516-17738535 | Msa0397780:intron | 30.0% | |
| GTTAAGAATATTTGTAGAGG+AGG | + | chr3_2:17738665-17738684 | None:intergenic | 30.0% | |
| ACTTGTAGAAAAGAAGTTAC+CGG | + | chr3_2:17738730-17738749 | None:intergenic | 30.0% | |
| AGATGAGGCAAATAAATCTT+AGG | + | chr3_2:17739136-17739155 | None:intergenic | 30.0% | |
| AGCCTCAAATTATCATATGA+TGG | + | chr3_2:17739163-17739182 | None:intergenic | 30.0% | |
| TGATATGTGCCAATAAAGTA+TGG | + | chr3_2:17739269-17739288 | None:intergenic | 30.0% | |
| TCCTCAGATTTATTTACCTT+TGG | - | chr3_2:17739296-17739315 | Msa0397780:CDS | 30.0% | |
| TCCAAAGGTAAATAAATCTG+AGG | + | chr3_2:17739300-17739319 | None:intergenic | 30.0% | |
| TGATTCCCTTTATACTGTAA+AGG | - | chr3_2:17739460-17739479 | Msa0397780:intron | 30.0% | |
| TCACTCCTTTACAGTATAAA+GGG | + | chr3_2:17739468-17739487 | None:intergenic | 30.0% | |
| TTCACTCCTTTACAGTATAA+AGG | + | chr3_2:17739469-17739488 | None:intergenic | 30.0% | |
| AATAACAGACAGAACTTCAT+CGG | + | chr3_2:17739789-17739808 | None:intergenic | 30.0% | |
| CACCCATATCTTATATTGAA+AGG | + | chr3_2:17739860-17739879 | None:intergenic | 30.0% | |
| CTTTCAATATAAGATATGGG+TGG | - | chr3_2:17739858-17739877 | Msa0397780:intron | 30.0% | |
| TTTAAGAACCCAGACAAAAA+TGG | + | chr3_2:17739886-17739905 | None:intergenic | 30.0% | |
| TCATTATTGAATGTACTGCA+GGG | + | chr3_2:17740057-17740076 | None:intergenic | 30.0% | |
| TGCAGTACATTCAATAATGA+CGG | - | chr3_2:17740057-17740076 | Msa0397780:intron | 30.0% | |
| !! | ACAGTTTCTAGCTTTATTGT+TGG | - | chr3_2:17740226-17740245 | Msa0397780:intron | 30.0% |
| TATCTAATCCAAGTGACAAA+TGG | + | chr3_2:17740350-17740369 | None:intergenic | 30.0% | |
| ATTAGATATTTGAGCCTTGA+GGG | - | chr3_2:17740362-17740381 | Msa0397780:intron | 30.0% | |
| AATTAACAGTTTAACCCTCA+AGG | + | chr3_2:17740379-17740398 | None:intergenic | 30.0% | |
| ! | GTTGTTTCAGAGTCAAATTA+TGG | + | chr3_2:17740493-17740512 | None:intergenic | 30.0% |
| TTTACACATTGTCTACAAGT+TGG | - | chr3_2:17740514-17740533 | Msa0397780:five_prime_UTR | 30.0% | |
| !!! | CAGTGGATATTTTTGGTATA+TGG | + | chr3_2:17740684-17740703 | None:intergenic | 30.0% |
| AATGCTGCAAAAAATATCAG+TGG | + | chr3_2:17740701-17740720 | None:intergenic | 30.0% | |
| TGAAGCAGATATAAGTGAAA+TGG | - | chr3_2:17740944-17740963 | Msa0397780:intron | 30.0% | |
| GAAGCAGATATAAGTGAAAT+GGG | - | chr3_2:17740945-17740964 | Msa0397780:intron | 30.0% | |
| ! | ATAAAGCTCTTTTTGAACCT+TGG | + | chr3_2:17741162-17741181 | None:intergenic | 30.0% |
| AATACTGAAGAGATGAAAGA+AGG | - | chr3_2:17741274-17741293 | Msa0397780:intron | 30.0% | |
| TACTTAAGCATTAATGCCAT+AGG | - | chr3_2:17741417-17741436 | Msa0397780:intron | 30.0% | |
| ACTTAAGCATTAATGCCATA+GGG | - | chr3_2:17741418-17741437 | Msa0397780:intron | 30.0% | |
| !!! | CCATAGGGTATTTTTAACTT+CGG | - | chr3_2:17741433-17741452 | Msa0397780:intron | 30.0% |
| CTTTATAGCTGATATCTTTG+AGG | - | chr3_2:17741506-17741525 | Msa0397780:intron | 30.0% | |
| ! | TCTAAAACTAAGGTTGCAAA+TGG | + | chr3_2:17741540-17741559 | None:intergenic | 30.0% |
| !!! | TTTGCAACCTTAGTTTTAGA+TGG | - | chr3_2:17741540-17741559 | Msa0397780:intron | 30.0% |
| GACTAACTCTAATTTCAATG+TGG | - | chr3_2:17741723-17741742 | Msa0397780:intron | 30.0% | |
| !! | TTTTGGGGAATTATAGATCT+TGG | - | chr3_2:17741754-17741773 | Msa0397780:intron | 30.0% |
| CAAGAACACATCAAAATCAA+TGG | + | chr3_2:17741789-17741808 | None:intergenic | 30.0% | |
| !!! | CATTGATTTTGATGTGTTCT+TGG | - | chr3_2:17741787-17741806 | Msa0397780:intron | 30.0% |
| ! | ATATTTTGCAGTGGATATTC+TGG | - | chr3_2:17741955-17741974 | Msa0397780:intron | 30.0% |
| ! | TATTTTGCAGTGGATATTCT+GGG | - | chr3_2:17741956-17741975 | Msa0397780:intron | 30.0% |
| AAATGAACCACAATCAACCT+TGG | - | chr3_2:17738198-17738217 | Msa0397780:CDS | 35.0% | |
| TTCATCAACTTCTACTGCTA+AGG | - | chr3_2:17738243-17738262 | Msa0397780:CDS | 35.0% | |
| ATGGAGACCAGTAACATATA+TGG | + | chr3_2:17738331-17738350 | None:intergenic | 35.0% | |
| TCAGAACCAATATGTAAGCA+TGG | + | chr3_2:17738350-17738369 | None:intergenic | 35.0% | |
| CATGTTGAAAATGATGTGCT+AGG | - | chr3_2:17738471-17738490 | Msa0397780:CDS | 35.0% | |
| TTGTAGAAAAGAAGTTACCG+GGG | + | chr3_2:17738728-17738747 | None:intergenic | 35.0% | |
| CTTGTAGAAAAGAAGTTACC+GGG | + | chr3_2:17738729-17738748 | None:intergenic | 35.0% | |
| !!! | TATATTTTAGTTGGAAGGGG+AGG | + | chr3_2:17738802-17738821 | None:intergenic | 35.0% |
| GGTCTAAATATTTGCTTGCA+AGG | + | chr3_2:17739084-17739103 | None:intergenic | 35.0% | |
| TGATATGTGCCAATAGAGTA+TGG | + | chr3_2:17739105-17739124 | None:intergenic | 35.0% | |
| TCATATGATGGTAACAGATG+AGG | + | chr3_2:17739151-17739170 | None:intergenic | 35.0% | |
| TCATGGTTAGCATTCAATGA+AGG | - | chr3_2:17739381-17739400 | Msa0397780:intron | 35.0% | |
| TTCCTCCACAGTGAAAAATA+CGG | + | chr3_2:17739823-17739842 | None:intergenic | 35.0% | |
| !!! | TTTTTTTGCAGAATACGCAG+AGG | - | chr3_2:17740016-17740035 | Msa0397780:intron | 35.0% |
| !!! | TTTTTTGCAGAATACGCAGA+GGG | - | chr3_2:17740017-17740036 | Msa0397780:intron | 35.0% |
| GTCATTATTGAATGTACTGC+AGG | + | chr3_2:17740058-17740077 | None:intergenic | 35.0% | |
| AAACCCTTCATACTTATCGA+TGG | - | chr3_2:17740266-17740285 | Msa0397780:intron | 35.0% | |
| ! | TCCAAGTGACAAATGGATTT+AGG | + | chr3_2:17740343-17740362 | None:intergenic | 35.0% |
| GATTAGATATTTGAGCCTTG+AGG | - | chr3_2:17740361-17740380 | Msa0397780:intron | 35.0% | |
| !! | GTCTACAAGTTGGTTATGAT+TGG | - | chr3_2:17740524-17740543 | Msa0397780:five_prime_UTR | 35.0% |
| ATGTAGTTCTTTGCAGTAGT+TGG | + | chr3_2:17740574-17740593 | None:intergenic | 35.0% | |
| CATTTATTTGCACATACCAC+AGG | - | chr3_2:17740591-17740610 | Msa0397780:intron | 35.0% | |
| GTATATGGATTTCTGTGCAT+TGG | + | chr3_2:17740669-17740688 | None:intergenic | 35.0% | |
| AGGTGAAAGAGAAAAGTAAG+TGG | - | chr3_2:17740735-17740754 | Msa0397780:intron | 35.0% | |
| CTTGGCACCTTCAATATATT+TGG | + | chr3_2:17741144-17741163 | None:intergenic | 35.0% | |
| !! | CAAATATATTGAAGGTGCCA+AGG | - | chr3_2:17741142-17741161 | Msa0397780:intron | 35.0% |
| !! | AATAAGGTATTGGAGTTGAG+AGG | - | chr3_2:17741217-17741236 | Msa0397780:intron | 35.0% |
| ! | TTCATCTCTTCAGTATTGAG+AGG | + | chr3_2:17741271-17741290 | None:intergenic | 35.0% |
| ! | ATCAAAATCTAAGGCCATTG+TGG | + | chr3_2:17741302-17741321 | None:intergenic | 35.0% |
| TCGAGCAGAATCAAAATCTA+AGG | + | chr3_2:17741311-17741330 | None:intergenic | 35.0% | |
| AAGTACCTTGTTCAACTTGA+GGG | + | chr3_2:17741402-17741421 | None:intergenic | 35.0% | |
| TAAGTACCTTGTTCAACTTG+AGG | + | chr3_2:17741403-17741422 | None:intergenic | 35.0% | |
| CCGAAGTTAAAAATACCCTA+TGG | + | chr3_2:17741436-17741455 | None:intergenic | 35.0% | |
| ! | ATTTTTGCATATGGACAGAC+TGG | - | chr3_2:17741576-17741595 | Msa0397780:intron | 35.0% |
| ! | TTTTTGCATATGGACAGACT+GGG | - | chr3_2:17741577-17741596 | Msa0397780:intron | 35.0% |
| ACATCAAAATCAATGGGAAG+AGG | + | chr3_2:17741782-17741801 | None:intergenic | 35.0% | |
| AAGGTGATAGAAAACGTACA+TGG | + | chr3_2:17741861-17741880 | None:intergenic | 35.0% | |
| TGGTCTCCATGCTTACATAT+TGG | - | chr3_2:17738341-17738360 | Msa0397780:intron | 40.0% | |
| CTGATGAGTGATGAGAGAAA+AGG | - | chr3_2:17738366-17738385 | Msa0397780:intron | 40.0% | |
| !! | CAAAGCTCAAAGGTACTAAC+TGG | + | chr3_2:17738422-17738441 | None:intergenic | 40.0% |
| CAGTTAGTACCTTTGAGCTT+TGG | - | chr3_2:17738420-17738439 | Msa0397780:CDS | 40.0% | |
| ! | TTAGTACCTTTGAGCTTTGG+AGG | - | chr3_2:17738423-17738442 | Msa0397780:CDS | 40.0% |
| TTAGTTCCTCCAAAGCTCAA+AGG | + | chr3_2:17738432-17738451 | None:intergenic | 40.0% | |
| CCTAATGCAAGATGAAACTG+AGG | + | chr3_2:17738698-17738717 | None:intergenic | 40.0% | |
| CCTCAGTTTCATCTTGCATT+AGG | - | chr3_2:17738695-17738714 | Msa0397780:intron | 40.0% | |
| !! | TTGATTTGCCAATTCCACGT+TGG | + | chr3_2:17738881-17738900 | None:intergenic | 40.0% |
| ! | TTGTATGACAATGAGGCATC+TGG | - | chr3_2:17738967-17738986 | Msa0397780:intron | 40.0% |
| GGACATTTGGTTACTTCCAA+AGG | + | chr3_2:17739315-17739334 | None:intergenic | 40.0% | |
| TGCATTGTGACTGTTAATCC+TGG | - | chr3_2:17739515-17739534 | Msa0397780:five_prime_UTR | 40.0% | |
| TCCTGGGATTGTAGTTCAAT+CGG | - | chr3_2:17739699-17739718 | Msa0397780:intron | 40.0% | |
| AACTTCATCGGATCCTAAGT+CGG | + | chr3_2:17739777-17739796 | None:intergenic | 40.0% | |
| CAGTGAAAAATACGGTCAAG+AGG | + | chr3_2:17739815-17739834 | None:intergenic | 40.0% | |
| ! | CTTGACCGTATTTTTCACTG+TGG | - | chr3_2:17739815-17739834 | Msa0397780:intron | 40.0% |
| ! | TTTTTGCAGAATACGCAGAG+GGG | - | chr3_2:17740018-17740037 | Msa0397780:intron | 40.0% |
| TTGAATGTACTGCAGGGTAT+GGG | + | chr3_2:17740051-17740070 | None:intergenic | 40.0% | |
| ATTGAATGTACTGCAGGGTA+TGG | + | chr3_2:17740052-17740071 | None:intergenic | 40.0% | |
| GGTCCATCGATAAGTATGAA+GGG | + | chr3_2:17740272-17740291 | None:intergenic | 40.0% | |
| AGGTCCATCGATAAGTATGA+AGG | + | chr3_2:17740273-17740292 | None:intergenic | 40.0% | |
| ! | CATGATGTTTCTGCGAAATG+AGG | + | chr3_2:17740293-17740312 | None:intergenic | 40.0% |
| GCCTAAATCCATTTGTCACT+TGG | - | chr3_2:17740339-17740358 | Msa0397780:intron | 40.0% | |
| ! | AATTGAAGGCACATATCAGC+AGG | + | chr3_2:17740464-17740483 | None:intergenic | 40.0% |
| GTTGGTTATGATTGGAGCAA+AGG | - | chr3_2:17740532-17740551 | Msa0397780:intron | 40.0% | |
| !! | TTGCAGCATTTGCTATTGAG+AGG | - | chr3_2:17740711-17740730 | Msa0397780:intron | 40.0% |
| TATCACTGAGAGACTTGATG+AGG | - | chr3_2:17740762-17740781 | Msa0397780:intron | 40.0% | |
| AGACTTGATGAGGAGATTGA+AGG | - | chr3_2:17740772-17740791 | Msa0397780:intron | 40.0% | |
| TACACTGTACACATGCGAAA+GGG | + | chr3_2:17741051-17741070 | None:intergenic | 40.0% | |
| !!! | GATTTTGATTCTGCTCGAGA+TGG | - | chr3_2:17741313-17741332 | Msa0397780:intron | 40.0% |
| GACTGGAAAAACCTTCACAA+TGG | - | chr3_2:17741599-17741618 | Msa0397780:intron | 40.0% | |
| GGAAAAACCTTCACAATGGA+AGG | - | chr3_2:17741603-17741622 | Msa0397780:intron | 40.0% | |
| AAAGTCCCTGGTAAAGATGA+TGG | + | chr3_2:17741827-17741846 | None:intergenic | 40.0% | |
| ! | TTCTGGGTTGGACCATTTAT+TGG | - | chr3_2:17741972-17741991 | Msa0397780:intron | 40.0% |
| TTCTACTGCTAAGGCCTCAA+GGG | - | chr3_2:17738252-17738271 | Msa0397780:CDS | 45.0% | |
| GTCACTGAATTGCTTCTTGC+TGG | + | chr3_2:17738577-17738596 | None:intergenic | 45.0% | |
| ! | GTTATACTGAGAGTGTGACG+TGG | + | chr3_2:17738612-17738631 | None:intergenic | 45.0% |
| AAAGAAGTTACCGGGGAAGA+TGG | + | chr3_2:17738721-17738740 | None:intergenic | 45.0% | |
| ! | CAATTCCACGTTGGTATCGA+GGG | + | chr3_2:17738872-17738891 | None:intergenic | 45.0% |
| GAGCTTCTGTATTCTTCTCC+AGG | + | chr3_2:17739536-17739555 | None:intergenic | 45.0% | |
| ACCGATTGAACTACAATCCC+AGG | + | chr3_2:17739703-17739722 | None:intergenic | 45.0% | |
| ACTTCATCGGATCCTAAGTC+GGG | + | chr3_2:17739776-17739795 | None:intergenic | 45.0% | |
| ! | GACCGTATTTTTCACTGTGG+AGG | - | chr3_2:17739818-17739837 | Msa0397780:intron | 45.0% |
| TCACTGTGGAGGAAACTTGA+AGG | - | chr3_2:17739829-17739848 | Msa0397780:intron | 45.0% | |
| !! | TGGGTGGTTCCATTTTTGTC+TGG | - | chr3_2:17739874-17739893 | Msa0397780:intron | 45.0% |
| !! | GGGTGGTTCCATTTTTGTCT+GGG | - | chr3_2:17739875-17739894 | Msa0397780:intron | 45.0% |
| !! | AGCATTTGCTATTGAGAGGC+AGG | - | chr3_2:17740715-17740734 | Msa0397780:intron | 45.0% |
| GGAACACATGAAGCTGTTAG+AGG | - | chr3_2:17740899-17740918 | Msa0397780:intron | 45.0% | |
| GTACACTGTACACATGCGAA+AGG | + | chr3_2:17741052-17741071 | None:intergenic | 45.0% | |
| ! | TAAGCGACTTTTGCCGTTGT+AGG | - | chr3_2:17741245-17741264 | Msa0397780:intron | 45.0% |
| ! | CAGTATTGAGAGGCCTACAA+CGG | + | chr3_2:17741261-17741280 | None:intergenic | 45.0% |
| GATGAAAGAAGGAGCCACAA+TGG | - | chr3_2:17741285-17741304 | Msa0397780:intron | 45.0% | |
| GAGCTTACTGGACTGTCAAA+TGG | - | chr3_2:17741337-17741356 | Msa0397780:intron | 45.0% | |
| !! | TTTGGCCCTCAAGTTGAACA+AGG | - | chr3_2:17741394-17741413 | Msa0397780:intron | 45.0% |
| TTCAGTGCCTTCCATTGTGA+AGG | + | chr3_2:17741613-17741632 | None:intergenic | 45.0% | |
| AGGCTCGAGGAGTAAATTTC+AGG | - | chr3_2:17741634-17741653 | Msa0397780:intron | 45.0% | |
| TGATGTGTTCTTGGTCCACT+TGG | - | chr3_2:17741796-17741815 | Msa0397780:intron | 45.0% | |
| AGCTGCCATCATCTTTACCA+GGG | - | chr3_2:17741819-17741838 | Msa0397780:intron | 45.0% | |
| TCTTTACCAGGGACTTTGCT+TGG | - | chr3_2:17741830-17741849 | Msa0397780:intron | 45.0% | |
| CTTTACCAGGGACTTTGCTT+GGG | - | chr3_2:17741831-17741850 | Msa0397780:intron | 45.0% | |
| TTGCAGTGGATATTCTGGGT+TGG | - | chr3_2:17741960-17741979 | Msa0397780:intron | 45.0% | |
| GCAAGAGCAGCTCCAATAAA+TGG | + | chr3_2:17741987-17742006 | None:intergenic | 45.0% | |
| CAAACACAACAGCAGCAAGA+TGG | + | chr3_2:17742039-17742058 | None:intergenic | 45.0% | |
| !!! | TATAAATTTTATATTTTAGT+TGG | + | chr3_2:17738811-17738830 | None:intergenic | 5.0% |
| !! | TTTCAAAAAAATAAAAAATA+AGG | - | chr3_2:17741201-17741220 | Msa0397780:intron | 5.0% |
| ACTTCTTCTTCTAGGCGCCA+AGG | + | chr3_2:17738218-17738237 | None:intergenic | 50.0% | |
| CTTCTACTGCTAAGGCCTCA+AGG | - | chr3_2:17738251-17738270 | Msa0397780:CDS | 50.0% | |
| ! | TAAGGCCTCAAGGGTATGTG+CGG | - | chr3_2:17738261-17738280 | Msa0397780:CDS | 50.0% |
| TTGCATTAGGCCATCTTCCC+CGG | - | chr3_2:17738708-17738727 | Msa0397780:intron | 50.0% | |
| CCAATTCCACGTTGGTATCG+AGG | + | chr3_2:17738873-17738892 | None:intergenic | 50.0% | |
| CCTCGATACCAACGTGGAAT+TGG | - | chr3_2:17738870-17738889 | Msa0397780:intron | 50.0% | |
| !! | CACAATGGAAGGCACTGAAG+AGG | - | chr3_2:17741614-17741633 | Msa0397780:intron | 50.0% |
| ! | AAGATGATGGCAGCTCCAAG+TGG | + | chr3_2:17741814-17741833 | None:intergenic | 50.0% |
| GAGCTGCCATCATCTTTACC+AGG | - | chr3_2:17741818-17741837 | Msa0397780:intron | 50.0% | |
| ! | AGATGGCTCGGATGACAATC+TGG | + | chr3_2:17742022-17742041 | None:intergenic | 50.0% |
| ACAACAGCAGCAAGATGGCT+CGG | + | chr3_2:17742034-17742053 | None:intergenic | 50.0% | |
| ! | CTAGGCGCCAAGGTTGATTG+TGG | + | chr3_2:17738208-17738227 | None:intergenic | 55.0% |
| TCCTGTGAAATCCGACCCGA+AGG | - | chr3_2:17738845-17738864 | Msa0397780:intron | 55.0% | |
| ACCTTCGGGTCGGATTTCAC+AGG | + | chr3_2:17738849-17738868 | None:intergenic | 55.0% | |
| ! | GTTGGTATCGAGGGACCTTC+GGG | + | chr3_2:17738863-17738882 | None:intergenic | 55.0% |
| ! | CGTTGGTATCGAGGGACCTT+CGG | + | chr3_2:17738864-17738883 | None:intergenic | 55.0% |
| AAGGTCCCTCGATACCAACG+TGG | - | chr3_2:17738864-17738883 | Msa0397780:intron | 55.0% | |
| ATCCTAAGTCGGGACTGACG+GGG | + | chr3_2:17739766-17739785 | None:intergenic | 55.0% | |
| GATCCTAAGTCGGGACTGAC+GGG | + | chr3_2:17739767-17739786 | None:intergenic | 55.0% | |
| GGATCCTAAGTCGGGACTGA+CGG | + | chr3_2:17739768-17739787 | None:intergenic | 55.0% | |
| GTGTGTGTGTGTGTGTCCTG+TGG | + | chr3_2:17740610-17740629 | None:intergenic | 55.0% | |
| GCTCGAGATGGTGAGCTTAC+TGG | - | chr3_2:17741325-17741344 | Msa0397780:intron | 55.0% | |
| GCATATGGACAGACTGGGAC+TGG | - | chr3_2:17741582-17741601 | Msa0397780:intron | 55.0% | |
| GTCATCCCAAGCAAAGTCCC+TGG | + | chr3_2:17741839-17741858 | None:intergenic | 55.0% | |
| ! | TGGCTCGGATGACAATCTGG+TGG | + | chr3_2:17742019-17742038 | None:intergenic | 55.0% |
| GAGGACCGCACATACCCTTG+AGG | + | chr3_2:17738269-17738288 | None:intergenic | 60.0% | |
| GTATCGAGGGACCTTCGGGT+CGG | + | chr3_2:17738859-17738878 | None:intergenic | 60.0% | |
| !! | GTCAGAGCACTGCCCTGTCA+AGG | - | chr3_2:17739721-17739740 | Msa0397780:intron | 60.0% |
| !! | AGAGCACTGCCCTGTCAAGG+CGG | - | chr3_2:17739724-17739743 | Msa0397780:intron | 60.0% |
| !! | GAAGGCACTGAAGAGGCTCG+AGG | - | chr3_2:17741621-17741640 | Msa0397780:intron | 60.0% |
| CCGCAGCTTCCGCCTTGACA+GGG | + | chr3_2:17739736-17739755 | None:intergenic | 65.0% | |
| CCCTGTCAAGGCGGAAGCTG+CGG | - | chr3_2:17739733-17739752 | Msa0397780:intron | 65.0% | |
| CCTGTCAAGGCGGAAGCTGC+GGG | - | chr3_2:17739734-17739753 | Msa0397780:intron | 65.0% | |
| AGCCCCGTCAGTCCCGACTT+AGG | - | chr3_2:17739761-17739780 | Msa0397780:intron | 65.0% | |
| CCCGCAGCTTCCGCCTTGAC+AGG | + | chr3_2:17739737-17739756 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 17738185 | 17742077 | 17738185 | ID=Msa0397780;Name=Msa0397780 |
| chr3_2 | mRNA | 17738185 | 17742077 | 17738185 | ID=Msa0397780-mRNA-1;Parent=Msa0397780;Name=Msa0397780-mRNA-1;_AED=0.78;_eAED=0.78;_QI=260|0|0.12|0.12|1|1|8|0|174 |
| chr3_2 | exon | 17738185 | 17738296 | 17738185 | ID=Msa0397780-mRNA-1:exon:3990;Parent=Msa0397780-mRNA-1 |
| chr3_2 | exon | 17738401 | 17738492 | 17738401 | ID=Msa0397780-mRNA-1:exon:3989;Parent=Msa0397780-mRNA-1 |
| chr3_2 | exon | 17738582 | 17738668 | 17738582 | ID=Msa0397780-mRNA-1:exon:3988;Parent=Msa0397780-mRNA-1 |
| chr3_2 | exon | 17739075 | 17739157 | 17739075 | ID=Msa0397780-mRNA-1:exon:3987;Parent=Msa0397780-mRNA-1 |
| chr3_2 | exon | 17739239 | 17739374 | 17739239 | ID=Msa0397780-mRNA-1:exon:3986;Parent=Msa0397780-mRNA-1 |
| chr3_2 | exon | 17739469 | 17739545 | 17739469 | ID=Msa0397780-mRNA-1:exon:3985;Parent=Msa0397780-mRNA-1 |
| chr3_2 | exon | 17740441 | 17740549 | 17740441 | ID=Msa0397780-mRNA-1:exon:3984;Parent=Msa0397780-mRNA-1 |
| chr3_2 | exon | 17741989 | 17742077 | 17741989 | ID=Msa0397780-mRNA-1:exon:3983;Parent=Msa0397780-mRNA-1 |
| chr3_2 | five_prime_UTR | 17741989 | 17742077 | 17741989 | ID=Msa0397780-mRNA-1:five_prime_utr;Parent=Msa0397780-mRNA-1 |
| chr3_2 | five_prime_UTR | 17740441 | 17740549 | 17740441 | ID=Msa0397780-mRNA-1:five_prime_utr;Parent=Msa0397780-mRNA-1 |
| chr3_2 | five_prime_UTR | 17739484 | 17739545 | 17739484 | ID=Msa0397780-mRNA-1:five_prime_utr;Parent=Msa0397780-mRNA-1 |
| chr3_2 | CDS | 17739469 | 17739483 | 17739469 | ID=Msa0397780-mRNA-1:cds;Parent=Msa0397780-mRNA-1 |
| chr3_2 | CDS | 17739239 | 17739374 | 17739239 | ID=Msa0397780-mRNA-1:cds;Parent=Msa0397780-mRNA-1 |
| chr3_2 | CDS | 17739075 | 17739157 | 17739075 | ID=Msa0397780-mRNA-1:cds;Parent=Msa0397780-mRNA-1 |
| chr3_2 | CDS | 17738582 | 17738668 | 17738582 | ID=Msa0397780-mRNA-1:cds;Parent=Msa0397780-mRNA-1 |
| chr3_2 | CDS | 17738401 | 17738492 | 17738401 | ID=Msa0397780-mRNA-1:cds;Parent=Msa0397780-mRNA-1 |
| chr3_2 | CDS | 17738185 | 17738296 | 17738185 | ID=Msa0397780-mRNA-1:cds;Parent=Msa0397780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
