Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351040 | RHN74647.1 | 81.690 | 71 | 13 | 0 | 118 | 188 | 388 | 458 | 1.18e-29 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351040 | sp|F4IBQ9|KN14Q_ARATH | 53.521 | 71 | 33 | 0 | 118 | 188 | 503 | 573 | 5.25e-20 | 90.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351040 | A0A396JHT7 | 81.690 | 71 | 13 | 0 | 118 | 188 | 388 | 458 | 5.65e-30 | 126 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0351040 | Msa0397780 | 0.900374 | 7.808750e-78 | -8.615850e-47 |
| Msa0351040 | Msa0399410 | 0.810802 | 9.618343e-51 | -8.615850e-47 |
| Msa0351040 | Msa0461160 | 0.800176 | 1.629670e-48 | -8.615850e-47 |
| Msa0351040 | Msa0493000 | 0.800695 | 1.277547e-48 | -8.615850e-47 |
| Msa0351040 | Msa0508110 | 0.803899 | 2.797015e-49 | -8.615850e-47 |
| Msa0351040 | Msa0967280 | 0.821342 | 4.248642e-53 | -8.615850e-47 |
| Msa0351040 | Msa0985630 | 0.822661 | 2.102639e-53 | -8.615850e-47 |
| Msa0351040 | Msa0999120 | 0.846998 | 1.527030e-59 | -8.615850e-47 |
| Msa0351040 | Msa1248300 | 0.811964 | 5.378155e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351040 | MtrunA17_Chr2g0312631 | 81.690 | 71 | 13 | 0 | 118 | 188 | 388 | 458 | 1.09e-33 | 126 |
| Msa0351040 | MtrunA17_Chr5g0421521 | 46.269 | 67 | 36 | 0 | 122 | 188 | 382 | 448 | 8.25e-14 | 68.9 |
| Msa0351040 | MtrunA17_Chr7g0245181 | 90.909 | 33 | 3 | 0 | 1 | 33 | 62 | 94 | 1.21e-13 | 68.6 |
| Msa0351040 | MtrunA17_Chr5g0411971 | 46.269 | 67 | 36 | 0 | 122 | 188 | 407 | 473 | 1.76e-13 | 68.2 |
| Msa0351040 | MtrunA17_Chr5g0421591 | 46.269 | 67 | 36 | 0 | 122 | 188 | 382 | 448 | 1.98e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351040 | AT1G72250.2 | 53.521 | 71 | 33 | 0 | 118 | 188 | 504 | 574 | 5.09e-21 | 90.1 |
| Msa0351040 | AT1G72250.4 | 53.521 | 71 | 33 | 0 | 118 | 188 | 515 | 585 | 5.24e-21 | 90.1 |
| Msa0351040 | AT1G72250.3 | 53.521 | 71 | 33 | 0 | 118 | 188 | 516 | 586 | 5.34e-21 | 90.1 |
| Msa0351040 | AT1G72250.1 | 53.521 | 71 | 33 | 0 | 118 | 188 | 495 | 565 | 5.60e-21 | 90.1 |
| Msa0351040 | AT2G22610.3 | 44.776 | 67 | 37 | 0 | 122 | 188 | 426 | 492 | 3.50e-13 | 67.8 |
| Msa0351040 | AT2G22610.1 | 44.776 | 67 | 37 | 0 | 122 | 188 | 425 | 491 | 3.53e-13 | 67.4 |
| Msa0351040 | AT2G22610.2 | 44.776 | 67 | 37 | 0 | 122 | 188 | 425 | 491 | 3.91e-13 | 67.4 |
Find 35 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAATTTGATGTTATCTT+TGG | 0.238018 | 3_1:-16786178 | Msa0351040:CDS |
| GCTCGAGATGGTGAGCTTAC+TGG | 0.318012 | 3_1:-16786229 | Msa0351040:CDS |
| GTCGCTGAATTGCTTCTTGC+TGG | 0.321034 | 3_1:+16788853 | None:intergenic |
| CCTCAGTTTCATCTTGCATT+AGG | 0.329811 | 3_1:-16788732 | Msa0351040:CDS |
| CTTTATAGCTGATATCTTTG+AGG | 0.397729 | 3_1:-16786048 | Msa0351040:intron |
| TCGAGCAGAATCAAAATCTA+AGG | 0.399156 | 3_1:+16786246 | None:intergenic |
| ATCAGTTGGAGGAGCAAAAC+AGG | 0.411482 | 3_1:-16789745 | Msa0351040:CDS |
| ATTGAATGTACTGCAGGGTA+TGG | 0.417856 | 3_1:+16787376 | None:intergenic |
| AAGTACCTTGTTCAACTTGA+GGG | 0.435755 | 3_1:+16786155 | None:intergenic |
| ATTCTATCCATCTAAAACTA+AGG | 0.436270 | 3_1:+16786007 | None:intergenic |
| GTCATTATTGAATGTACTGC+AGG | 0.440761 | 3_1:+16787370 | None:intergenic |
| GGAGCAAAACAGGCTCGAAA+TGG | 0.464148 | 3_1:-16789735 | Msa0351040:CDS |
| TTGCATTAGGCCATCTTCCC+CGG | 0.465060 | 3_1:-16788719 | Msa0351040:intron |
| GAGGAAAGCATGATTATGAT+TGG | 0.470423 | 3_1:-16789683 | Msa0351040:intron |
| GAGCTTACTGGACTGTCAAA+TGG | 0.472273 | 3_1:-16786217 | Msa0351040:CDS |
| TCTAAAACTAAGGTTGCAAA+TGG | 0.485233 | 3_1:+16786017 | None:intergenic |
| AAAGAAGTTACCGGGGAAGA+TGG | 0.498028 | 3_1:+16788709 | None:intergenic |
| TTCATCTCTTCAGTATTGAG+AGG | 0.512664 | 3_1:+16786286 | None:intergenic |
| GTTAAGAATATTTGTAGAGG+AGG | 0.533254 | 3_1:+16788765 | None:intergenic |
| AATACTGAAGAGATGAAAGA+AGG | 0.538266 | 3_1:-16786280 | Msa0351040:CDS |
| TGTGTTAAGAATATTTGTAG+AGG | 0.546852 | 3_1:+16788762 | None:intergenic |
| ATCAAAATCTAAGGCCATTG+TGG | 0.548969 | 3_1:+16786255 | None:intergenic |
| ACAGGCTCGAAATGGAATTG+AGG | 0.578692 | 3_1:-16789727 | Msa0351040:CDS |
| TAAGTACCTTGTTCAACTTG+AGG | 0.584316 | 3_1:+16786154 | None:intergenic |
| TTGGGGAGACTATCAGTTGG+AGG | 0.589087 | 3_1:-16789756 | Msa0351040:CDS |
| GATGAAAGAAGGAGCCACAA+TGG | 0.605907 | 3_1:-16786269 | Msa0351040:CDS |
| CAGTTTCATATATGCTTACG+CGG | 0.615299 | 3_1:-16787348 | Msa0351040:intron |
| TTGAATGTACTGCAGGGTAT+GGG | 0.618328 | 3_1:+16787377 | None:intergenic |
| GATGTGTTGTCATCTGTAGA+AGG | 0.621426 | 3_1:-16789705 | Msa0351040:CDS |
| AAATTGGGGAGACTATCAGT+TGG | 0.634959 | 3_1:-16789759 | Msa0351040:CDS |
| TCATTATTGAATGTACTGCA+GGG | 0.643688 | 3_1:+16787371 | None:intergenic |
| GTGTTGTCATCTGTAGAAGG+AGG | 0.667010 | 3_1:-16789702 | Msa0351040:CDS |
| TTTGGCCCTCAAGTTGAACA+AGG | 0.671290 | 3_1:-16786160 | Msa0351040:intron |
| CCTAATGCAAGATGAAACTG+AGG | 0.692852 | 3_1:+16788732 | None:intergenic |
| GTTATACTGAGAGTGTGACG+TGG | 0.784474 | 3_1:+16788818 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTCATTTATAAATTTTATAT+GGG | - | chr3_1:16787111-16787130 | Msa0351040:intron | 10.0% |
| !! | AAAAATAAAAAATAAGGTAT+TGG | - | chr3_1:16789419-16789438 | Msa0351040:intron | 10.0% |
| !! | TATTATTAGTAGATTGAATT+TGG | - | chr3_1:16786142-16786161 | Msa0351040:intron | 15.0% |
| !! | ATATAATTGAATTGTTCAAT+TGG | + | chr3_1:16786310-16786329 | None:intergenic | 15.0% |
| !! | AATGAAAATAAAACTACTAT+TGG | - | chr3_1:16786430-16786449 | Msa0351040:intron | 15.0% |
| !!! | TTTTTTTTAAAGAAAGGATA+TGG | + | chr3_1:16786646-16786665 | None:intergenic | 15.0% |
| !!! | TATGGATTTTTTTTAAAGAA+AGG | + | chr3_1:16786652-16786671 | None:intergenic | 15.0% |
| !!! | GCTCATTTATAAATTTTATA+TGG | - | chr3_1:16787110-16787129 | Msa0351040:intron | 15.0% |
| !!! | ATTTTATATTTTAGTTGGAA+GGG | + | chr3_1:16787145-16787164 | None:intergenic | 15.0% |
| !!! | AATTTTATATTTTAGTTGGA+AGG | + | chr3_1:16787146-16787165 | None:intergenic | 15.0% |
| !! | AAATCTTAACATAGTAATTA+TGG | + | chr3_1:16787676-16787695 | None:intergenic | 15.0% |
| !!! | TATCTAATCTAAGAATTTTT+AGG | - | chr3_1:16787998-16788017 | Msa0351040:intron | 15.0% |
| !!! | TAAACTGTTAATTTTATGAT+TGG | - | chr3_1:16788730-16788749 | Msa0351040:CDS | 15.0% |
| !!! | ATGATATGAAATTTTCTAAA+AGG | - | chr3_1:16789035-16789054 | Msa0351040:intron | 15.0% |
| !!! | TCAAATTTAAAAGTACTTTT+TGG | + | chr3_1:16789579-16789598 | None:intergenic | 15.0% |
| !! | TTTAAATTTGATGTTATCTT+TGG | - | chr3_1:16789588-16789607 | Msa0351040:intron | 15.0% |
| !!! | AGTTACAATATTTTAGTTGA+TGG | - | chr3_1:16786333-16786352 | Msa0351040:intron | 20.0% |
| !!! | GTTACAATATTTTAGTTGAT+GGG | - | chr3_1:16786334-16786353 | Msa0351040:intron | 20.0% |
| !! | AAAAAATCCATATATGTTAC+TGG | - | chr3_1:16786660-16786679 | Msa0351040:intron | 20.0% |
| !!! | CAAACATATATACATTTTCA+TGG | + | chr3_1:16786731-16786750 | None:intergenic | 20.0% |
| !! | TATAAATGAGCAAAGATATT+TGG | + | chr3_1:16787101-16787120 | None:intergenic | 20.0% |
| !!! | TTTTATATTTTAGTTGGAAG+GGG | + | chr3_1:16787144-16787163 | None:intergenic | 20.0% |
| !!! | AATGAAAGAGATTTTTTCTT+TGG | - | chr3_1:16787234-16787253 | Msa0351040:intron | 20.0% |
| !! | TAACATTATATGATAACTTG+AGG | - | chr3_1:16787330-16787349 | Msa0351040:intron | 20.0% |
| !! | ATATTGATACCATACTTTAT+TGG | - | chr3_1:16787597-16787616 | Msa0351040:intron | 20.0% |
| !!! | TTTTTTATACATGATCATCA+TGG | - | chr3_1:16787704-16787723 | Msa0351040:intron | 20.0% |
| !! | ATTTCTCTTCATTATTCATT+AGG | + | chr3_1:16787969-16787988 | None:intergenic | 20.0% |
| !! | AACCTTTCAATATAAGATAT+GGG | - | chr3_1:16788195-16788214 | Msa0351040:intron | 20.0% |
| !! | TTAATAGTGTACAGTAATTA+CGG | + | chr3_1:16788250-16788269 | None:intergenic | 20.0% |
| !!! | AAAATATCAGTGGATATTTT+TGG | + | chr3_1:16788903-16788922 | None:intergenic | 20.0% |
| !!! | AATGTGTTTGTCAATTTTAT+TGG | - | chr3_1:16789073-16789092 | Msa0351040:intron | 20.0% |
| !! | TATTGGATAGATTATGAAAA+TGG | - | chr3_1:16789090-16789109 | Msa0351040:intron | 20.0% |
| !!! | TCAAAAAGAGCTTTATAATA+AGG | - | chr3_1:16789378-16789397 | Msa0351040:intron | 20.0% |
| !! | AATGACATAACCTTTTCTAA+GGG | + | chr3_1:16786228-16786247 | None:intergenic | 25.0% |
| !! | AAATGACATAACCTTTTCTA+AGG | + | chr3_1:16786229-16786248 | None:intergenic | 25.0% |
| ! | ATGGATTTATAAACTATGAG+AGG | + | chr3_1:16786627-16786646 | None:intergenic | 25.0% |
| ! | GATTAAGAAGTTAAACTCAA+CGG | + | chr3_1:16786838-16786857 | None:intergenic | 25.0% |
| ! | TGTGTTAAGAATATTTGTAG+AGG | + | chr3_1:16787007-16787026 | None:intergenic | 25.0% |
| ! | ATTCTTATTGTATGACAATG+AGG | - | chr3_1:16787300-16787319 | Msa0351040:intron | 25.0% |
| ! | TTCAGCAAACTAATATGATA+AGG | + | chr3_1:16787371-16787390 | None:intergenic | 25.0% |
| ! | TCCTCAAATTTATTTACCTT+CGG | - | chr3_1:16787636-16787655 | Msa0351040:intron | 25.0% |
| ! | ACATAGTAATTATGGACATT+TGG | + | chr3_1:16787668-16787687 | None:intergenic | 25.0% |
| !! | TGTACACTTAATTTTATTCC+TGG | - | chr3_1:16788022-16788041 | Msa0351040:intron | 25.0% |
| !! | GTACACTTAATTTTATTCCT+GGG | - | chr3_1:16788023-16788042 | Msa0351040:intron | 25.0% |
| ! | GAACCTTTCAATATAAGATA+TGG | - | chr3_1:16788194-16788213 | Msa0351040:intron | 25.0% |
| ! | TTACTTTCTAGATTGATACA+TGG | + | chr3_1:16788273-16788292 | None:intergenic | 25.0% |
| ! | AACTTCAGAAATATAAGCAA+AGG | + | chr3_1:16788312-16788331 | None:intergenic | 25.0% |
| ! | GCATAGAAAGTAAATAACTA+CGG | + | chr3_1:16788470-16788489 | None:intergenic | 25.0% |
| ! | ACATATGATTTCTCTTTACT+TGG | + | chr3_1:16788538-16788557 | None:intergenic | 25.0% |
| ! | AGAGAAATCATATGTATTGT+TGG | - | chr3_1:16788543-16788562 | Msa0351040:intron | 25.0% |
| ! | GAGAAATCATATGTATTGTT+GGG | - | chr3_1:16788544-16788563 | Msa0351040:intron | 25.0% |
| !! | TAATTTTATGATTGGAGCAA+AGG | - | chr3_1:16788738-16788757 | Msa0351040:CDS | 25.0% |
| ! | ACTTGAGTTTAAATTGTTGA+TGG | - | chr3_1:16788850-16788869 | Msa0351040:CDS | 25.0% |
| !! | TCATTCACTCAATTTTTGTT+AGG | + | chr3_1:16789019-16789038 | None:intergenic | 25.0% |
| ! | CTAAAGTCCAAATATATTGA+AGG | - | chr3_1:16789346-16789365 | Msa0351040:intron | 25.0% |
| !! | AGAGCTTTATAATAAGGTAT+TGG | - | chr3_1:16789384-16789403 | Msa0351040:intron | 25.0% |
| GATTGAATTTGGCCAAAATA+AGG | - | chr3_1:16786153-16786172 | Msa0351040:intron | 30.0% | |
| ! | TTTTAGATCATTCCTAGATC+TGG | - | chr3_1:16786246-16786265 | Msa0351040:CDS | 30.0% |
| ! | ATGGGTTACTATTTGAAATG+AGG | - | chr3_1:16786352-16786371 | Msa0351040:intron | 30.0% |
| !!! | TTTTATGATGATGGAAGAAC+CGG | + | chr3_1:16786520-16786539 | None:intergenic | 30.0% |
| ! | TGTGGTTCATTTTATGATGA+TGG | + | chr3_1:16786529-16786548 | None:intergenic | 30.0% |
| TTCATCAATTTCTACTGCTA+AGG | - | chr3_1:16786582-16786601 | Msa0351040:intron | 30.0% | |
| ATGGATACCAGTAACATATA+TGG | + | chr3_1:16786670-16786689 | None:intergenic | 30.0% | |
| ATCATGTTTGTTTCAGCTTT+CGG | - | chr3_1:16786855-16786874 | Msa0351040:intron | 30.0% | |
| GTTAAGAATATTTGTAGAGG+AGG | + | chr3_1:16787004-16787023 | None:intergenic | 30.0% | |
| ACTTGTAGAAAAGAAGTTAC+CGG | + | chr3_1:16787069-16787088 | None:intergenic | 30.0% | |
| ATATTGAGACCATACTCTAT+TGG | - | chr3_1:16787433-16787452 | Msa0351040:intron | 30.0% | |
| AGATGAGGCAAATAAATCTT+AGG | + | chr3_1:16787476-16787495 | None:intergenic | 30.0% | |
| TACCATCATATGATAACTTG+AGG | - | chr3_1:16787498-16787517 | Msa0351040:intron | 30.0% | |
| TGATATGTGCCAATAAAGTA+TGG | + | chr3_1:16787609-16787628 | None:intergenic | 30.0% | |
| TCCGAAGGTAAATAAATTTG+AGG | + | chr3_1:16787640-16787659 | None:intergenic | 30.0% | |
| TGATTCCCTTTATACTGTAA+AGG | - | chr3_1:16787800-16787819 | Msa0351040:intron | 30.0% | |
| TCACTCCTTTACAGTATAAA+GGG | + | chr3_1:16787808-16787827 | None:intergenic | 30.0% | |
| TTCACTCCTTTACAGTATAA+AGG | + | chr3_1:16787809-16787828 | None:intergenic | 30.0% | |
| AATAACAGACAGAACTTCAT+CGG | + | chr3_1:16788129-16788148 | None:intergenic | 30.0% | |
| CACCCATATCTTATATTGAA+AGG | + | chr3_1:16788200-16788219 | None:intergenic | 30.0% | |
| CTTTCAATATAAGATATGGG+TGG | - | chr3_1:16788198-16788217 | Msa0351040:intron | 30.0% | |
| TCATTATTGAATGTACTGCA+GGG | + | chr3_1:16788398-16788417 | None:intergenic | 30.0% | |
| !! | ACAGTTTCTAGCTTTATAGT+TGG | - | chr3_1:16788570-16788589 | Msa0351040:intron | 30.0% |
| TATCTAATCCAAGTGACAAA+TGG | + | chr3_1:16788694-16788713 | None:intergenic | 30.0% | |
| ATTAGATATTTGAGCCATGA+GGG | - | chr3_1:16788706-16788725 | Msa0351040:intron | 30.0% | |
| AATTAACAGTTTAACCCTCA+TGG | + | chr3_1:16788723-16788742 | None:intergenic | 30.0% | |
| ! | GTATATGGATTTTTGTGCAT+TGG | + | chr3_1:16788881-16788900 | None:intergenic | 30.0% |
| !!! | CAGTGGATATTTTTGGTATA+TGG | + | chr3_1:16788896-16788915 | None:intergenic | 30.0% |
| AATGCTGCAAAAAATATCAG+TGG | + | chr3_1:16788913-16788932 | None:intergenic | 30.0% | |
| TGAAGCAGATATAAGTGAAA+TGG | - | chr3_1:16789156-16789175 | Msa0351040:intron | 30.0% | |
| GAAGCAGATATAAGTGAAAT+GGG | - | chr3_1:16789157-16789176 | Msa0351040:intron | 30.0% | |
| ! | ATAAAGCTCTTTTTGAACCT+TGG | + | chr3_1:16789374-16789393 | None:intergenic | 30.0% |
| !! | AATAAGGTATTGGAGTTGAA+AGG | - | chr3_1:16789429-16789448 | Msa0351040:intron | 30.0% |
| AATACTGAAGAGATGAAAGA+AGG | - | chr3_1:16789486-16789505 | Msa0351040:intron | 30.0% | |
| TACTTAAGCATTAATGCCAT+AGG | - | chr3_1:16789629-16789648 | Msa0351040:intron | 30.0% | |
| ACTTAAGCATTAATGCCATA+GGG | - | chr3_1:16789630-16789649 | Msa0351040:intron | 30.0% | |
| CTTTATAGCTGATATCTTTG+AGG | - | chr3_1:16789718-16789737 | Msa0351040:CDS | 30.0% | |
| ! | TCTAAAACTAAGGTTGCAAA+TGG | + | chr3_1:16789752-16789771 | None:intergenic | 30.0% |
| !!! | TTTGCAACCTTAGTTTTAGA+TGG | - | chr3_1:16789752-16789771 | Msa0351040:CDS | 30.0% |
| ! | GAGGAAAGCATGATTATGAT+TGG | - | chr3_1:16786083-16786102 | Msa0351040:intron | 35.0% |
| ATTTGGCCAAAATAAGGAAG+AGG | - | chr3_1:16786159-16786178 | Msa0351040:intron | 35.0% | |
| TTTGGCCAAAATAAGGAAGA+GGG | - | chr3_1:16786160-16786179 | Msa0351040:intron | 35.0% | |
| !! | TCTTTCCCTCTTCCTTATTT+TGG | + | chr3_1:16786168-16786187 | None:intergenic | 35.0% |
| TTAGCAGTTTCCCTTAGAAA+AGG | - | chr3_1:16786215-16786234 | Msa0351040:CDS | 35.0% | |
| CTGCAATTAATTCCAGATCT+AGG | + | chr3_1:16786261-16786280 | None:intergenic | 35.0% | |
| !! | TTTATGATGATGGAAGAACC+GGG | + | chr3_1:16786519-16786538 | None:intergenic | 35.0% |
| AAATGAACCACAATCAACCT+TGG | - | chr3_1:16786537-16786556 | Msa0351040:intron | 35.0% | |
| GAACTCAAACTTCTTCTTCT+AGG | + | chr3_1:16786565-16786584 | None:intergenic | 35.0% | |
| TGGTATCCATGCTTACATAT+TGG | - | chr3_1:16786680-16786699 | Msa0351040:intron | 35.0% | |
| TCAGAACCAATATGTAAGCA+TGG | + | chr3_1:16786689-16786708 | None:intergenic | 35.0% | |
| TAGTTAGTACCTTTGAGCTT+TGG | - | chr3_1:16786759-16786778 | Msa0351040:intron | 35.0% | |
| CATGTTGAAAATGATGTGCT+AGG | - | chr3_1:16786810-16786829 | Msa0351040:intron | 35.0% | |
| TTGTAGAAAAGAAGTTACCG+GGG | + | chr3_1:16787067-16787086 | None:intergenic | 35.0% | |
| CTTGTAGAAAAGAAGTTACC+GGG | + | chr3_1:16787068-16787087 | None:intergenic | 35.0% | |
| !!! | TATATTTTAGTTGGAAGGGG+AGG | + | chr3_1:16787141-16787160 | None:intergenic | 35.0% |
| TTCATTTGCCAATTCCACAT+TGG | + | chr3_1:16787220-16787239 | None:intergenic | 35.0% | |
| TGATATGTGCCAATAGAGTA+TGG | + | chr3_1:16787445-16787464 | None:intergenic | 35.0% | |
| TCATATGATGGTAACAGATG+AGG | + | chr3_1:16787491-16787510 | None:intergenic | 35.0% | |
| AGCCTCAAGTTATCATATGA+TGG | + | chr3_1:16787503-16787522 | None:intergenic | 35.0% | |
| TCATGGTTAGCATTCAATGA+AGG | - | chr3_1:16787721-16787740 | Msa0351040:intron | 35.0% | |
| TGCATTGTGACTGTTAATCT+TGG | - | chr3_1:16787855-16787874 | Msa0351040:intron | 35.0% | |
| TTCCTCCACAGTGAAAAATA+CGG | + | chr3_1:16788163-16788182 | None:intergenic | 35.0% | |
| TTTAAGAACCCAGACAGAAA+TGG | + | chr3_1:16788226-16788245 | None:intergenic | 35.0% | |
| !!! | TTTTTTTGCAGAATACGCAG+AGG | - | chr3_1:16788357-16788376 | Msa0351040:intron | 35.0% |
| !!! | TTTTTTGCAGAATACGCAGA+GGG | - | chr3_1:16788358-16788377 | Msa0351040:intron | 35.0% |
| GTCATTATTGAATGTACTGC+AGG | + | chr3_1:16788399-16788418 | None:intergenic | 35.0% | |
| CAGTTTCATATATGCTTACG+CGG | - | chr3_1:16788418-16788437 | Msa0351040:intron | 35.0% | |
| AAACCCTTCATACTTATCGA+TGG | - | chr3_1:16788610-16788629 | Msa0351040:intron | 35.0% | |
| ! | TCCAAGTGACAAATGGATTT+AGG | + | chr3_1:16788687-16788706 | None:intergenic | 35.0% |
| GATTAGATATTTGAGCCATG+AGG | - | chr3_1:16788705-16788724 | Msa0351040:intron | 35.0% | |
| ATGTAGTTCTTTGCAGTAGT+TGG | + | chr3_1:16788780-16788799 | None:intergenic | 35.0% | |
| CATTTATTTGCACATACCAC+AGG | - | chr3_1:16788797-16788816 | Msa0351040:CDS | 35.0% | |
| AGGTGAAAGAGAAAAGTAAG+TGG | - | chr3_1:16788947-16788966 | Msa0351040:intron | 35.0% | |
| CTTGGCACCTTCAATATATT+TGG | + | chr3_1:16789356-16789375 | None:intergenic | 35.0% | |
| !! | CAAATATATTGAAGGTGCCA+AGG | - | chr3_1:16789354-16789373 | Msa0351040:intron | 35.0% |
| ! | TTCATCTCTTCAGTATTGAG+AGG | + | chr3_1:16789483-16789502 | None:intergenic | 35.0% |
| ! | ATCAAAATCTAAGGCCATTG+TGG | + | chr3_1:16789514-16789533 | None:intergenic | 35.0% |
| TCGAGCAGAATCAAAATCTA+AGG | + | chr3_1:16789523-16789542 | None:intergenic | 35.0% | |
| AAGTACCTTGTTCAACTTGA+GGG | + | chr3_1:16789614-16789633 | None:intergenic | 35.0% | |
| TAAGTACCTTGTTCAACTTG+AGG | + | chr3_1:16789615-16789634 | None:intergenic | 35.0% | |
| !!! | CCATAGGGTCTTTTTAACTT+CGG | - | chr3_1:16789645-16789664 | Msa0351040:intron | 35.0% |
| GATGTGTTGTCATCTGTAGA+AGG | - | chr3_1:16786061-16786080 | Msa0351040:intron | 40.0% | |
| !! | ATCACTGATTCTATGCTGCT+AGG | - | chr3_1:16786473-16786492 | Msa0351040:intron | 40.0% |
| !! | TTATGATGATGGAAGAACCG+GGG | + | chr3_1:16786518-16786537 | None:intergenic | 40.0% |
| ! | TTAGTACCTTTGAGCTTTGG+AGG | - | chr3_1:16786762-16786781 | Msa0351040:intron | 40.0% |
| TTAGTTCCTCCAAAGCTCAA+AGG | + | chr3_1:16786771-16786790 | None:intergenic | 40.0% | |
| CCTAATGCAAGATGAAACTG+AGG | + | chr3_1:16787037-16787056 | None:intergenic | 40.0% | |
| CCTCAGTTTCATCTTGCATT+AGG | - | chr3_1:16787034-16787053 | Msa0351040:intron | 40.0% | |
| CAATTCCACATTGGTATGGA+GGG | + | chr3_1:16787211-16787230 | None:intergenic | 40.0% | |
| TTGCCAATTCCACATTGGTA+TGG | + | chr3_1:16787215-16787234 | None:intergenic | 40.0% | |
| ! | TTGTATGACAATGAGGCATC+TGG | - | chr3_1:16787307-16787326 | Msa0351040:intron | 40.0% |
| GGTCTCAATATTTGCTTGCA+AGG | + | chr3_1:16787424-16787443 | None:intergenic | 40.0% | |
| TCCTGGGATTGTAGTTCAAT+CGG | - | chr3_1:16788039-16788058 | Msa0351040:intron | 40.0% | |
| AACTTCATCGGATCCTAAGT+CGG | + | chr3_1:16788117-16788136 | None:intergenic | 40.0% | |
| CAGTGAAAAATACGGTCAAG+AGG | + | chr3_1:16788155-16788174 | None:intergenic | 40.0% | |
| ! | CTTGACCGTATTTTTCACTG+TGG | - | chr3_1:16788155-16788174 | Msa0351040:intron | 40.0% |
| ! | TTTTTGCAGAATACGCAGAG+GGG | - | chr3_1:16788359-16788378 | Msa0351040:intron | 40.0% |
| TTGAATGTACTGCAGGGTAT+GGG | + | chr3_1:16788392-16788411 | None:intergenic | 40.0% | |
| ATTGAATGTACTGCAGGGTA+TGG | + | chr3_1:16788393-16788412 | None:intergenic | 40.0% | |
| GGTCCATCGATAAGTATGAA+GGG | + | chr3_1:16788616-16788635 | None:intergenic | 40.0% | |
| AGGTCCATCGATAAGTATGA+AGG | + | chr3_1:16788617-16788636 | None:intergenic | 40.0% | |
| ! | CATGATGTTTCTGCGAAATG+AGG | + | chr3_1:16788637-16788656 | None:intergenic | 40.0% |
| GCCTAAATCCATTTGTCACT+TGG | - | chr3_1:16788683-16788702 | Msa0351040:intron | 40.0% | |
| !! | TTGCAGCATTTGCTATTGAG+AGG | - | chr3_1:16788923-16788942 | Msa0351040:intron | 40.0% |
| TATCACTGAGAGACTTGATG+AGG | - | chr3_1:16788974-16788993 | Msa0351040:intron | 40.0% | |
| AGACTTGATGAGGAGATTGA+AGG | - | chr3_1:16788984-16789003 | Msa0351040:intron | 40.0% | |
| TACACTGTACACATGCGAAA+GGG | + | chr3_1:16789263-16789282 | None:intergenic | 40.0% | |
| !!! | GATTTTGATTCTGCTCGAGA+TGG | - | chr3_1:16789525-16789544 | Msa0351040:intron | 40.0% |
| CCGAAGTTAAAAAGACCCTA+TGG | + | chr3_1:16789648-16789667 | None:intergenic | 40.0% | |
| ATCAGTTGGAGGAGCAAAAC+AGG | - | chr3_1:16786021-16786040 | Msa0351040:CDS | 45.0% | |
| ACAGGCTCGAAATGGAATTG+AGG | - | chr3_1:16786039-16786058 | Msa0351040:CDS | 45.0% | |
| GTGTTGTCATCTGTAGAAGG+AGG | - | chr3_1:16786064-16786083 | Msa0351040:intron | 45.0% | |
| TTTCTACTGCTAAGGCCTCA+AGG | - | chr3_1:16786590-16786609 | Msa0351040:intron | 45.0% | |
| TTCTACTGCTAAGGCCTCAA+GGG | - | chr3_1:16786591-16786610 | Msa0351040:intron | 45.0% | |
| CTGATGAGTGATGAGAGAGA+AGG | - | chr3_1:16786705-16786724 | Msa0351040:intron | 45.0% | |
| ! | GTTATACTGAGAGTGTGACG+TGG | + | chr3_1:16786951-16786970 | None:intergenic | 45.0% |
| AAAGAAGTTACCGGGGAAGA+TGG | + | chr3_1:16787060-16787079 | None:intergenic | 45.0% | |
| CCAATTCCACATTGGTATGG+AGG | + | chr3_1:16787212-16787231 | None:intergenic | 45.0% | |
| CCTCCATACCAATGTGGAAT+TGG | - | chr3_1:16787209-16787228 | Msa0351040:intron | 45.0% | |
| GGACATTTGGTTACTTCCGA+AGG | + | chr3_1:16787655-16787674 | None:intergenic | 45.0% | |
| ACCGATTGAACTACAATCCC+AGG | + | chr3_1:16788043-16788062 | None:intergenic | 45.0% | |
| ACTTCATCGGATCCTAAGTC+GGG | + | chr3_1:16788116-16788135 | None:intergenic | 45.0% | |
| ! | GACCGTATTTTTCACTGTGG+AGG | - | chr3_1:16788158-16788177 | Msa0351040:intron | 45.0% |
| TCACTGTGGAGGAAACTTGA+AGG | - | chr3_1:16788169-16788188 | Msa0351040:intron | 45.0% | |
| !! | AGCATTTGCTATTGAGAGGC+AGG | - | chr3_1:16788927-16788946 | Msa0351040:intron | 45.0% |
| GGAACACATGAAGCTGTTAG+AGG | - | chr3_1:16789111-16789130 | Msa0351040:intron | 45.0% | |
| CACATGAAGCTGTTAGAGGA+AGG | - | chr3_1:16789115-16789134 | Msa0351040:intron | 45.0% | |
| GTACACTGTACACATGCGAA+AGG | + | chr3_1:16789264-16789283 | None:intergenic | 45.0% | |
| ! | TAAGCGACTTTTGCCGTTGT+AGG | - | chr3_1:16789457-16789476 | Msa0351040:intron | 45.0% |
| ! | CAGTATTGAGAGGCCTACAA+CGG | + | chr3_1:16789473-16789492 | None:intergenic | 45.0% |
| GATGAAAGAAGGAGCCACAA+TGG | - | chr3_1:16789497-16789516 | Msa0351040:intron | 45.0% | |
| GAGCTTACTGGACTGTCAAA+TGG | - | chr3_1:16789549-16789568 | Msa0351040:intron | 45.0% | |
| !! | TTTGGCCCTCAAGTTGAACA+AGG | - | chr3_1:16789606-16789625 | Msa0351040:intron | 45.0% |
| !!! | TATAAATTTTATATTTTAGT+TGG | + | chr3_1:16787150-16787169 | None:intergenic | 5.0% |
| !! | TTTCAAAAAAATAAAAAATA+AGG | - | chr3_1:16789413-16789432 | Msa0351040:intron | 5.0% |
| TTGGGGAGACTATCAGTTGG+AGG | - | chr3_1:16786010-16786029 | Msa0351040:CDS | 50.0% | |
| GGAGCAAAACAGGCTCGAAA+TGG | - | chr3_1:16786031-16786050 | Msa0351040:CDS | 50.0% | |
| ACTTCTTCTTCTAGGCGCCA+AGG | + | chr3_1:16786557-16786576 | None:intergenic | 50.0% | |
| ! | TAAGGCCTCAAGGGTATGTG+CGG | - | chr3_1:16786600-16786619 | Msa0351040:intron | 50.0% |
| GTCGCTGAATTGCTTCTTGC+TGG | + | chr3_1:16786916-16786935 | None:intergenic | 50.0% | |
| TTGCATTAGGCCATCTTCCC+CGG | - | chr3_1:16787047-16787066 | Msa0351040:intron | 50.0% | |
| ATTGGTATGGAGGGACCTTC+GGG | + | chr3_1:16787202-16787221 | None:intergenic | 50.0% | |
| CATTGGTATGGAGGGACCTT+CGG | + | chr3_1:16787203-16787222 | None:intergenic | 50.0% | |
| AAGGTCCCTCCATACCAATG+TGG | - | chr3_1:16787203-16787222 | Msa0351040:intron | 50.0% | |
| TGGGTGGTTCCATTTCTGTC+TGG | - | chr3_1:16788214-16788233 | Msa0351040:intron | 50.0% | |
| GGGTGGTTCCATTTCTGTCT+GGG | - | chr3_1:16788215-16788234 | Msa0351040:intron | 50.0% | |
| ! | CTAGGCGCCAAGGTTGATTG+TGG | + | chr3_1:16786547-16786566 | None:intergenic | 55.0% |
| TCCTGTGAAATCCGACCCGA+AGG | - | chr3_1:16787184-16787203 | Msa0351040:intron | 55.0% | |
| ACCTTCGGGTCGGATTTCAC+AGG | + | chr3_1:16787188-16787207 | None:intergenic | 55.0% | |
| ATCCTAAGTCGGGACTGACG+GGG | + | chr3_1:16788106-16788125 | None:intergenic | 55.0% | |
| GATCCTAAGTCGGGACTGAC+GGG | + | chr3_1:16788107-16788126 | None:intergenic | 55.0% | |
| GGATCCTAAGTCGGGACTGA+CGG | + | chr3_1:16788108-16788127 | None:intergenic | 55.0% | |
| GTGTGTGTGTGTGTGTCCTG+TGG | + | chr3_1:16788816-16788835 | None:intergenic | 55.0% | |
| GCTCGAGATGGTGAGCTTAC+TGG | - | chr3_1:16789537-16789556 | Msa0351040:intron | 55.0% | |
| TGCTAGGCTCCTTACTCCCC+CGG | - | chr3_1:16786489-16786508 | Msa0351040:intron | 60.0% | |
| GAGGACCGCACATACCCTTG+AGG | + | chr3_1:16786608-16786627 | None:intergenic | 60.0% | |
| GTATGGAGGGACCTTCGGGT+CGG | + | chr3_1:16787198-16787217 | None:intergenic | 60.0% | |
| !! | GTCAGAGCACTGCCCTGTCA+AGG | - | chr3_1:16788061-16788080 | Msa0351040:intron | 60.0% |
| !! | AGAGCACTGCCCTGTCAAGG+CGG | - | chr3_1:16788064-16788083 | Msa0351040:intron | 60.0% |
| GCTAGGCTCCTTACTCCCCC+GGG | - | chr3_1:16786490-16786509 | Msa0351040:intron | 65.0% | |
| CTAGGCTCCTTACTCCCCCG+GGG | - | chr3_1:16786491-16786510 | Msa0351040:intron | 65.0% | |
| ATGGAAGAACCGGGGTCCCC+GGG | + | chr3_1:16786510-16786529 | None:intergenic | 65.0% | |
| GATGGAAGAACCGGGGTCCC+CGG | + | chr3_1:16786511-16786530 | None:intergenic | 65.0% | |
| CCGCAGCTTCCGCCTTGACA+GGG | + | chr3_1:16788076-16788095 | None:intergenic | 65.0% | |
| CCCTGTCAAGGCGGAAGCTG+CGG | - | chr3_1:16788073-16788092 | Msa0351040:intron | 65.0% | |
| CCTGTCAAGGCGGAAGCTGC+GGG | - | chr3_1:16788074-16788093 | Msa0351040:intron | 65.0% | |
| AGCCCCGTCAGTCCCGACTT+AGG | - | chr3_1:16788101-16788120 | Msa0351040:intron | 65.0% | |
| TGGAAGAACCGGGGTCCCCG+GGG | + | chr3_1:16786509-16786528 | None:intergenic | 70.0% | |
| CCCGCAGCTTCCGCCTTGAC+AGG | + | chr3_1:16788077-16788096 | None:intergenic | 70.0% | |
| CCTTACTCCCCCGGGGACCC+CGG | - | chr3_1:16786498-16786517 | Msa0351040:intron | 75.0% | |
| GGAAGAACCGGGGTCCCCGG+GGG | + | chr3_1:16786508-16786527 | None:intergenic | 75.0% | |
| ! | CCGGGGTCCCCGGGGGAGTA+AGG | + | chr3_1:16786501-16786520 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 16786010 | 16789778 | 16786010 | ID=Msa0351040;Name=Msa0351040 |
| chr3_1 | mRNA | 16786010 | 16789778 | 16786010 | ID=Msa0351040-mRNA-1;Parent=Msa0351040;Name=Msa0351040-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0.25|0|0.4|1|1|5|0|188 |
| chr3_1 | exon | 16789684 | 16789778 | 16789684 | ID=Msa0351040-mRNA-1:exon:4075;Parent=Msa0351040-mRNA-1 |
| chr3_1 | exon | 16788720 | 16788917 | 16788720 | ID=Msa0351040-mRNA-1:exon:4074;Parent=Msa0351040-mRNA-1 |
| chr3_1 | exon | 16787349 | 16787420 | 16787349 | ID=Msa0351040-mRNA-1:exon:4073;Parent=Msa0351040-mRNA-1 |
| chr3_1 | exon | 16786161 | 16786309 | 16786161 | ID=Msa0351040-mRNA-1:exon:4072;Parent=Msa0351040-mRNA-1 |
| chr3_1 | exon | 16786010 | 16786062 | 16786010 | ID=Msa0351040-mRNA-1:exon:4071;Parent=Msa0351040-mRNA-1 |
| chr3_1 | CDS | 16789684 | 16789778 | 16789684 | ID=Msa0351040-mRNA-1:cds;Parent=Msa0351040-mRNA-1 |
| chr3_1 | CDS | 16788720 | 16788917 | 16788720 | ID=Msa0351040-mRNA-1:cds;Parent=Msa0351040-mRNA-1 |
| chr3_1 | CDS | 16787349 | 16787420 | 16787349 | ID=Msa0351040-mRNA-1:cds;Parent=Msa0351040-mRNA-1 |
| chr3_1 | CDS | 16786161 | 16786309 | 16786161 | ID=Msa0351040-mRNA-1:cds;Parent=Msa0351040-mRNA-1 |
| chr3_1 | CDS | 16786010 | 16786062 | 16786010 | ID=Msa0351040-mRNA-1:cds;Parent=Msa0351040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
