Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508130 | XP_013460725.1 | 97.927 | 193 | 4 | 0 | 1 | 193 | 1 | 193 | 5.11e-132 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508130 | sp|Q5XET5|HESO1_ARATH | 60.104 | 193 | 77 | 0 | 1 | 193 | 1 | 193 | 1.01e-75 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508130 | A0A072UY73 | 97.927 | 193 | 4 | 0 | 1 | 193 | 1 | 193 | 2.44e-132 | 389 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0225460 | Msa0508130 | 0.833678 | 4.646783e-56 | -8.615850e-47 |
| Msa0225680 | Msa0508130 | 0.832506 | 9.091339e-56 | -8.615850e-47 |
| Msa0397150 | Msa0508130 | 0.802399 | 5.714803e-49 | -8.615850e-47 |
| Msa0410500 | Msa0508130 | 0.807599 | 4.672915e-50 | -8.615850e-47 |
| Msa0508130 | Msa1027990 | 0.804823 | 1.794939e-49 | -8.615850e-47 |
| Msa0508130 | Msa1269480 | 0.818242 | 2.170668e-52 | -8.615850e-47 |
| Msa0508130 | Msa1332000 | 0.811557 | 6.597854e-51 | -8.615850e-47 |
| Msa0508130 | Msa1422420 | 0.827591 | 1.437891e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508130 | MtrunA17_Chr3g0112301 | 97.927 | 193 | 4 | 0 | 1 | 193 | 1 | 193 | 4.70e-136 | 389 |
| Msa0508130 | MtrunA17_Chr3g0130901 | 35.417 | 192 | 116 | 4 | 7 | 193 | 46 | 234 | 2.42e-28 | 110 |
| Msa0508130 | MtrunA17_Chr8g0351151 | 27.660 | 141 | 94 | 1 | 53 | 193 | 368 | 500 | 4.08e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508130 | AT2G39740.3 | 60.104 | 193 | 77 | 0 | 1 | 193 | 1 | 193 | 1.03e-76 | 238 |
| Msa0508130 | AT2G39740.2 | 60.104 | 193 | 77 | 0 | 1 | 193 | 1 | 193 | 1.03e-76 | 238 |
| Msa0508130 | AT2G39740.1 | 60.104 | 193 | 77 | 0 | 1 | 193 | 1 | 193 | 1.03e-76 | 238 |
| Msa0508130 | AT3G45750.1 | 35.897 | 195 | 113 | 4 | 7 | 193 | 43 | 233 | 4.92e-31 | 119 |
| Msa0508130 | AT3G45750.4 | 38.750 | 160 | 91 | 3 | 37 | 193 | 3 | 158 | 1.14e-27 | 109 |
| Msa0508130 | AT3G45750.3 | 38.750 | 160 | 91 | 3 | 37 | 193 | 3 | 158 | 1.14e-27 | 109 |
| Msa0508130 | AT3G45750.5 | 38.926 | 149 | 86 | 2 | 48 | 193 | 7 | 153 | 1.20e-27 | 109 |
| Msa0508130 | AT3G45760.1 | 33.516 | 182 | 109 | 4 | 20 | 193 | 56 | 233 | 1.36e-21 | 91.7 |
| Msa0508130 | AT3G45750.2 | 32.530 | 166 | 79 | 2 | 59 | 193 | 2 | 165 | 2.44e-21 | 91.3 |
| Msa0508130 | AT3G45760.2 | 30.964 | 197 | 109 | 5 | 20 | 193 | 56 | 248 | 4.01e-18 | 81.6 |
| Msa0508130 | AT2G45620.1 | 27.222 | 180 | 121 | 4 | 14 | 193 | 441 | 610 | 1.41e-14 | 71.6 |
Find 64 sgRNAs with CRISPR-Local
Find 401 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGATCCAAAGCAAGAATT+TGG | 0.179756 | 3_4:-55854224 | None:intergenic |
| AAGAAGAAGAAGTGGGATTT+AGG | 0.236218 | 3_4:-55849108 | None:intergenic |
| ATTTCAATCCAGTTATTAAA+TGG | 0.239451 | 3_4:+55853550 | Msa0508130:CDS |
| CAAACCATTGTCGTTACTAT+TGG | 0.241497 | 3_4:+55851222 | Msa0508130:five_prime_UTR |
| TTATTAAATGGTTCCCATAT+TGG | 0.255975 | 3_4:+55853562 | Msa0508130:CDS |
| TGGATTTGGAGGCGGGAAAA+AGG | 0.259074 | 3_4:-55849215 | None:intergenic |
| TTTCATTCATTCGTTGGATT+TGG | 0.260347 | 3_4:-55849229 | None:intergenic |
| TTCTCCCAGCAGATCCAATA+TGG | 0.262095 | 3_4:-55853576 | None:intergenic |
| TATGGGAACCATTTAATAAC+TGG | 0.283717 | 3_4:-55853558 | None:intergenic |
| ACTTGTAATCTTCCACCTTC+AGG | 0.329990 | 3_4:+55854449 | Msa0508130:CDS |
| TGAAATCCAAATTCTTGCTT+TGG | 0.332807 | 3_4:+55854218 | Msa0508130:CDS |
| GGGGCAACTGTTGAACCATT+TGG | 0.345887 | 3_4:+55853484 | Msa0508130:intron |
| AATTCTTGCTTTGGATCAAC+AGG | 0.354600 | 3_4:+55854227 | Msa0508130:CDS |
| AAACCATTGTCGTTACTATT+GGG | 0.372987 | 3_4:+55851223 | Msa0508130:five_prime_UTR |
| TGGGATTTAGGTAACTTTCA+TGG | 0.386419 | 3_4:-55849096 | None:intergenic |
| GGGCAACTGTTGAACCATTT+GGG | 0.387693 | 3_4:+55853485 | Msa0508130:CDS |
| CTTTGGATCAACAGGATAGA+TGG | 0.392570 | 3_4:+55854235 | Msa0508130:CDS |
| GTGAACAAAATGAAAGCAAT+AGG | 0.394326 | 3_4:-55851190 | None:intergenic |
| CATTCATTCGTTGGATTTGG+AGG | 0.402202 | 3_4:-55849226 | None:intergenic |
| GGTTCCCATATTGGATCTGC+TGG | 0.419616 | 3_4:+55853571 | Msa0508130:CDS |
| AGATGGCCGCTTTCATGATC+TGG | 0.422107 | 3_4:+55854252 | Msa0508130:CDS |
| ATCTAATCTCTTCACGCGAT+GGG | 0.429598 | 3_4:+55853516 | Msa0508130:CDS |
| AACAAAGTAGATTCAATGAT+AGG | 0.429828 | 3_4:+55849049 | None:intergenic |
| ATGAATTCACATAGTATGTT+GGG | 0.433132 | 3_4:+55851265 | Msa0508130:CDS |
| TGACACCCTCACAAGAAGAT+TGG | 0.441842 | 3_4:+55851317 | Msa0508130:CDS |
| CATTCGTTGGATTTGGAGGC+GGG | 0.449731 | 3_4:-55849222 | None:intergenic |
| CTCAAAGCTTTGAGGATGAA+AGG | 0.453423 | 3_4:+55853628 | Msa0508130:CDS |
| AATGAATTCACATAGTATGT+TGG | 0.475354 | 3_4:+55851264 | Msa0508130:exon |
| CTTCACGCGATGGGGTGACT+TGG | 0.482241 | 3_4:+55853525 | Msa0508130:CDS |
| GTTTCGATCAATAACCTGTC+GGG | 0.493275 | 3_4:+55854190 | Msa0508130:CDS |
| GACACCCTCACAAGAAGATT+GGG | 0.493660 | 3_4:+55851318 | Msa0508130:CDS |
| TAGAATGGGAACTCTTGCAC+TGG | 0.495619 | 3_4:-55854131 | None:intergenic |
| CATCACAAGATATGCCTTGT+CGG | 0.498345 | 3_4:-55854168 | None:intergenic |
| TGGATTTCATCAAGCCCGAC+AGG | 0.505327 | 3_4:-55854204 | None:intergenic |
| GTTCTTCTTTGTACTTTGAA+AGG | 0.511867 | 3_4:-55849179 | None:intergenic |
| CACAAGAAGATTGGGAGATA+CGG | 0.514003 | 3_4:+55851326 | Msa0508130:CDS |
| TATCTAATCTCTTCACGCGA+TGG | 0.514198 | 3_4:+55853515 | Msa0508130:CDS |
| TCTCCCAGCAGATCCAATAT+GGG | 0.515355 | 3_4:-55853575 | None:intergenic |
| AATCCAACGAATGAATGAAA+AGG | 0.519103 | 3_4:+55849232 | Msa0508130:five_prime_UTR |
| AAAATCAATAACTCTAAGAC+TGG | 0.521420 | 3_4:+55854399 | Msa0508130:CDS |
| TATCTCCCAATCTTCTTGTG+AGG | 0.539767 | 3_4:-55851323 | None:intergenic |
| ATCTCCCAATCTTCTTGTGA+GGG | 0.540615 | 3_4:-55851322 | None:intergenic |
| TCATTCGTTGGATTTGGAGG+CGG | 0.547535 | 3_4:-55849223 | None:intergenic |
| AGAATGGGAACTCTTGCACT+GGG | 0.553145 | 3_4:-55854130 | None:intergenic |
| CTTTCATGATCTGGTTGTAG+TGG | 0.556570 | 3_4:+55854261 | Msa0508130:CDS |
| TTAGATACAACTGACCCAAA+TGG | 0.566089 | 3_4:-55853499 | None:intergenic |
| TACAAGTAAACTGAGCGTAA+AGG | 0.573483 | 3_4:-55854433 | None:intergenic |
| AGCAGAGAGGTACCTGAAGG+TGG | 0.574822 | 3_4:-55854461 | None:intergenic |
| TGTTTCGATCAATAACCTGT+CGG | 0.592217 | 3_4:+55854189 | Msa0508130:CDS |
| TTTACCTCTCAGACTCTCCA+CGG | 0.597748 | 3_4:-55851386 | None:intergenic |
| TGCTCCAGCAGGGATTTCAA+AGG | 0.605624 | 3_4:+55851123 | Msa0508130:intron |
| GGCTTGTGTAGGTGAAGGAG+TGG | 0.608531 | 3_4:+55854364 | Msa0508130:intron |
| TTTAACTGATATACTTCGGA+CGG | 0.611571 | 3_4:+55851294 | Msa0508130:CDS |
| GCGAAGCGCTGCTGAATCCG+TGG | 0.618401 | 3_4:+55851369 | Msa0508130:CDS |
| CAGGGATTTCAAAGGACATG+AGG | 0.622231 | 3_4:+55851131 | Msa0508130:intron |
| GTTCCCATATTGGATCTGCT+GGG | 0.628264 | 3_4:+55853572 | Msa0508130:CDS |
| TCTAATCTCTTCACGCGATG+GGG | 0.638369 | 3_4:+55853517 | Msa0508130:CDS |
| CTACAACCAGATCATGAAAG+CGG | 0.665942 | 3_4:-55854258 | None:intergenic |
| GAATGGGAACTCTTGCACTG+GGG | 0.677287 | 3_4:-55854129 | None:intergenic |
| GCTTGTGTAGGTGAAGGAGT+GGG | 0.679102 | 3_4:+55854365 | Msa0508130:intron |
| AAATTTAAAAGTGTCCGACA+AGG | 0.680098 | 3_4:+55854154 | Msa0508130:CDS |
| TGAAAGGAAGAAGTGTTGTG+TGG | 0.681060 | 3_4:-55849163 | None:intergenic |
| GAATCCGTGGAGAGTCTGAG+AGG | 0.687013 | 3_4:+55851382 | Msa0508130:CDS |
| ACTCCCAATAGTAACGACAA+TGG | 0.703130 | 3_4:-55851226 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTAAAAATTATTT+AGG | + | chr3_4:55849535-55849554 | Msa0508130:intron | 0.0% |
| !!! | ATATACTAATATTTTCATTT+TGG | + | chr3_4:55852172-55852191 | Msa0508130:intron | 10.0% |
| !! | AAAAAAAAAAATCTAAAGAA+TGG | + | chr3_4:55853147-55853166 | Msa0508130:intron | 10.0% |
| !!! | AAATAGTTTTTAAAATTACT+AGG | - | chr3_4:55853915-55853934 | None:intergenic | 10.0% |
| !!! | ATCATTTAAGTTATTTATTT+AGG | + | chr3_4:55854596-55854615 | Msa0508130:intron | 10.0% |
| !! | TTACAAGGAATATATATAAA+GGG | - | chr3_4:55850551-55850570 | None:intergenic | 15.0% |
| !! | ATTACAAGGAATATATATAA+AGG | - | chr3_4:55850552-55850571 | None:intergenic | 15.0% |
| !! | AGATAAAGGAAAAATTATAT+AGG | - | chr3_4:55852810-55852829 | None:intergenic | 15.0% |
| !! | TCTTAATTTCCATTATTTAT+TGG | - | chr3_4:55853229-55853248 | None:intergenic | 15.0% |
| !!! | ACACTTTTAAATTTTAGAAT+GGG | - | chr3_4:55854148-55854167 | None:intergenic | 15.0% |
| !! | AATCGGTGAAAAATAATAAA+GGG | - | chr3_4:55849427-55849446 | None:intergenic | 20.0% |
| !! | AAATCGGTGAAAAATAATAA+AGG | - | chr3_4:55849428-55849447 | None:intergenic | 20.0% |
| !!! | TTCTATATTGATGATCTTTT+TGG | + | chr3_4:55849504-55849523 | Msa0508130:intron | 20.0% |
| !!! | TCTATATTGATGATCTTTTT+GGG | + | chr3_4:55849505-55849524 | Msa0508130:intron | 20.0% |
| !!! | TGTGATTTCTTTTTTAGTTA+TGG | + | chr3_4:55849593-55849612 | Msa0508130:intron | 20.0% |
| !!! | GTGATTTCTTTTTTAGTTAT+GGG | + | chr3_4:55849594-55849613 | Msa0508130:intron | 20.0% |
| !!! | TAGTTAGAAGTAGTTTTTAT+AGG | + | chr3_4:55849704-55849723 | Msa0508130:intron | 20.0% |
| !!! | TGTAACTTGATTGAATATTT+TGG | + | chr3_4:55849913-55849932 | Msa0508130:intron | 20.0% |
| !! | TTAAAAATTAATGAACCGTA+TGG | - | chr3_4:55850157-55850176 | None:intergenic | 20.0% |
| !! | AATTTATATTTAAACCATGC+AGG | - | chr3_4:55850188-55850207 | None:intergenic | 20.0% |
| !! | TGGTTTAAATATAAATTGAG+TGG | + | chr3_4:55850191-55850210 | Msa0508130:intron | 20.0% |
| !! | GGTTTAAATATAAATTGAGT+GGG | + | chr3_4:55850192-55850211 | Msa0508130:intron | 20.0% |
| !! | GTTTAAATATAAATTGAGTG+GGG | + | chr3_4:55850193-55850212 | Msa0508130:intron | 20.0% |
| !! | TTTAAATATAAATTGAGTGG+GGG | + | chr3_4:55850194-55850213 | Msa0508130:intron | 20.0% |
| !! | TACAAGGAATATATATAAAG+GGG | - | chr3_4:55850550-55850569 | None:intergenic | 20.0% |
| !! | AAACACAACATTACAAAATT+AGG | - | chr3_4:55850793-55850812 | None:intergenic | 20.0% |
| !!! | TTGTTTTAACTGATATACTT+CGG | + | chr3_4:55851290-55851309 | Msa0508130:CDS | 20.0% |
| !! | GAATTGATATTCCATAAAAA+TGG | + | chr3_4:55851502-55851521 | Msa0508130:intron | 20.0% |
| !! | AGTTCGAACAAAAAAATATT+GGG | - | chr3_4:55851858-55851877 | None:intergenic | 20.0% |
| !!! | AGTATTTTTTTTTGTAGACT+TGG | + | chr3_4:55852013-55852032 | Msa0508130:intron | 20.0% |
| !!! | TTTATTTGCGTAGTTTTTTT+GGG | + | chr3_4:55852046-55852065 | Msa0508130:intron | 20.0% |
| !!! | TGTTTTTTTTTTTATGGACT+TGG | + | chr3_4:55852113-55852132 | Msa0508130:intron | 20.0% |
| !!! | ACTAATATTTTCATTTTGGT+TGG | + | chr3_4:55852176-55852195 | Msa0508130:intron | 20.0% |
| !! | TATTGTTTGATATTCATGTA+TGG | + | chr3_4:55852745-55852764 | Msa0508130:intron | 20.0% |
| !! | AATTTATACATGTGTTTAAC+AGG | - | chr3_4:55852833-55852852 | None:intergenic | 20.0% |
| !! | CTCATAAATAATCTAAAGAA+TGG | + | chr3_4:55853037-55853056 | Msa0508130:intron | 20.0% |
| !!! | TTAAAATTGCACTCAATTTT+TGG | + | chr3_4:55853457-55853476 | Msa0508130:intron | 20.0% |
| !! | ATTTCAATCCAGTTATTAAA+TGG | + | chr3_4:55853550-55853569 | Msa0508130:CDS | 20.0% |
| !!! | TTCCAAATTTTAAAAGGTAA+CGG | - | chr3_4:55853710-55853729 | None:intergenic | 20.0% |
| !!! | TTTTTAAATTTAGGAGAATC+AGG | - | chr3_4:55853763-55853782 | None:intergenic | 20.0% |
| !!! | AGTTTTTAAAATTACTAGGA+AGG | - | chr3_4:55853911-55853930 | None:intergenic | 20.0% |
| !! | TATAACCATAATTAGCAAAA+AGG | + | chr3_4:55854015-55854034 | Msa0508130:intron | 20.0% |
| !!! | GACACTTTTAAATTTTAGAA+TGG | - | chr3_4:55854149-55854168 | None:intergenic | 20.0% |
| !!! | ACTTTCATAGTACCTTTTTT+GGG | - | chr3_4:55849075-55849094 | None:intergenic | 25.0% |
| !!! | AACTTTCATAGTACCTTTTT+TGG | - | chr3_4:55849076-55849095 | None:intergenic | 25.0% |
| ! | GTCATTGCTAAAATTGTAAT+TGG | - | chr3_4:55849405-55849424 | None:intergenic | 25.0% |
| !! | TGAGAAAAATTGGAATTTTG+TGG | + | chr3_4:55849637-55849656 | Msa0508130:intron | 25.0% |
| ! | AAGTATCAACACTATTTGAT+TGG | - | chr3_4:55849839-55849858 | None:intergenic | 25.0% |
| !!! | AATCAAATAGTGTTGATACT+TGG | + | chr3_4:55849838-55849857 | Msa0508130:intron | 25.0% |
| ! | ATTCAATCAAGTTACAATTC+AGG | - | chr3_4:55849909-55849928 | None:intergenic | 25.0% |
| !!! | TTTTGGAGTCCAAAATATTT+AGG | + | chr3_4:55849930-55849949 | Msa0508130:intron | 25.0% |
| !! | GTCCAAAATATTTAGGATAA+CGG | + | chr3_4:55849937-55849956 | Msa0508130:intron | 25.0% |
| !! | AAAATATTTAGGATAACGGT+GGG | + | chr3_4:55849941-55849960 | Msa0508130:intron | 25.0% |
| ! | TATTCTTTGTAATGTTGAAC+CGG | + | chr3_4:55849982-55850001 | Msa0508130:intron | 25.0% |
| !! | GATTGTGGATTATATGTATT+AGG | + | chr3_4:55850387-55850406 | Msa0508130:intron | 25.0% |
| !! | AAATGCAAACAGATTTTACA+TGG | - | chr3_4:55850700-55850719 | None:intergenic | 25.0% |
| ! | CCTATAATCAATAAATGACA+TGG | - | chr3_4:55850836-55850855 | None:intergenic | 25.0% |
| !! | CCATGTCATTTATTGATTAT+AGG | + | chr3_4:55850833-55850852 | Msa0508130:intron | 25.0% |
| ! | CGATGTTTATTTCGTATTTA+GGG | - | chr3_4:55850896-55850915 | None:intergenic | 25.0% |
| ! | ACGATGTTTATTTCGTATTT+AGG | - | chr3_4:55850897-55850916 | None:intergenic | 25.0% |
| ! | AATGAATTCACATAGTATGT+TGG | + | chr3_4:55851264-55851283 | Msa0508130:exon | 25.0% |
| ! | ATGAATTCACATAGTATGTT+GGG | + | chr3_4:55851265-55851284 | Msa0508130:CDS | 25.0% |
| ! | CTAATCAAGTTCTACATTTA+AGG | - | chr3_4:55851436-55851455 | None:intergenic | 25.0% |
| ! | CTTAAATGTAGAACTTGATT+AGG | + | chr3_4:55851434-55851453 | Msa0508130:intron | 25.0% |
| ! | CTAAAGCTAAGTAAGATAAA+AGG | + | chr3_4:55851470-55851489 | Msa0508130:intron | 25.0% |
| ! | TGATATTCCATAAAAATGGA+AGG | + | chr3_4:55851506-55851525 | Msa0508130:intron | 25.0% |
| ! | TATTTATATTACGATGCCTA+TGG | + | chr3_4:55851538-55851557 | Msa0508130:intron | 25.0% |
| ! | ACCTTAAAAGCTAATTTGAT+TGG | + | chr3_4:55851583-55851602 | Msa0508130:intron | 25.0% |
| !!! | TCCAATCAAATTAGCTTTTA+AGG | - | chr3_4:55851587-55851606 | None:intergenic | 25.0% |
| !! | GATGGTTTCAAAATTGTTTT+TGG | + | chr3_4:55851738-55851757 | Msa0508130:intron | 25.0% |
| ! | CAGTTCGAACAAAAAAATAT+TGG | - | chr3_4:55851859-55851878 | None:intergenic | 25.0% |
| !!! | GTTTATTTGCGTAGTTTTTT+TGG | + | chr3_4:55852045-55852064 | Msa0508130:intron | 25.0% |
| !!! | TTATTTGCGTAGTTTTTTTG+GGG | + | chr3_4:55852047-55852066 | Msa0508130:intron | 25.0% |
| ! | CATGAATATCAAACAATAGA+AGG | - | chr3_4:55852743-55852762 | None:intergenic | 25.0% |
| !! | ATGTATAAATTTTCTGTCCT+GGG | + | chr3_4:55852842-55852861 | Msa0508130:intron | 25.0% |
| ! | AAGGTTTCTCCAATAAATAA+TGG | + | chr3_4:55853217-55853236 | Msa0508130:intron | 25.0% |
| ! | TAACACATTTGTTTCAAAGT+TGG | - | chr3_4:55853322-55853341 | None:intergenic | 25.0% |
| ! | ATACAGAGTATAAAACTTCA+TGG | - | chr3_4:55853355-55853374 | None:intergenic | 25.0% |
| ! | GTATGAAGTTGTCTTATAAT+AGG | + | chr3_4:55853371-55853390 | Msa0508130:intron | 25.0% |
| ! | TTATTAAATGGTTCCCATAT+TGG | + | chr3_4:55853562-55853581 | Msa0508130:CDS | 25.0% |
| !! | TAAATTTTCTCAAAGCTTTG+AGG | + | chr3_4:55853620-55853639 | Msa0508130:CDS | 25.0% |
| !!! | ATCCGTTACCTTTTAAAATT+TGG | + | chr3_4:55853705-55853724 | Msa0508130:intron | 25.0% |
| !! | CCTCATTTCCAAATTTTAAA+AGG | - | chr3_4:55853716-55853735 | None:intergenic | 25.0% |
| !!! | CCTTTTAAAATTTGGAAATG+AGG | + | chr3_4:55853713-55853732 | Msa0508130:intron | 25.0% |
| ! | AAATAATACATGCACCAAAT+GGG | + | chr3_4:55853786-55853805 | Msa0508130:intron | 25.0% |
| !!! | TATAGAGCTCTAAAATCTAT+AGG | - | chr3_4:55853951-55853970 | None:intergenic | 25.0% |
| ! | TTGATATGTCCTAATACATT+TGG | + | chr3_4:55854062-55854081 | Msa0508130:intron | 25.0% |
| !!! | GTTATTGATTTTATGTGCTT+TGG | - | chr3_4:55854391-55854410 | None:intergenic | 25.0% |
| !!! | AAAATCAATAACTCTAAGAC+TGG | + | chr3_4:55854399-55854418 | Msa0508130:CDS | 25.0% |
| GTTCTTCTTTGTACTTTGAA+AGG | - | chr3_4:55849182-55849201 | None:intergenic | 30.0% | |
| TTTCATTCATTCGTTGGATT+TGG | - | chr3_4:55849232-55849251 | None:intergenic | 30.0% | |
| AATCCAACGAATGAATGAAA+AGG | + | chr3_4:55849232-55849251 | Msa0508130:five_prime_UTR | 30.0% | |
| ! | TTACCTTTTCATTCATTCGT+TGG | - | chr3_4:55849238-55849257 | None:intergenic | 30.0% |
| TTATTTAGGTGCTCTTTGAT+TGG | + | chr3_4:55849549-55849568 | Msa0508130:intron | 30.0% | |
| ! | TGAGTTGGATTGAGAAAAAT+TGG | + | chr3_4:55849627-55849646 | Msa0508130:intron | 30.0% |
| ! | TCTGTTCTTGATTTTGTGTT+TGG | + | chr3_4:55849672-55849691 | Msa0508130:intron | 30.0% |
| ! | TAGAAGTAGTTTTTATAGGC+AGG | + | chr3_4:55849708-55849727 | Msa0508130:intron | 30.0% |
| TTAGTTCATAGATGAGATCA+AGG | + | chr3_4:55849745-55849764 | Msa0508130:intron | 30.0% | |
| ATCAAGGAATCATGTTAATG+TGG | + | chr3_4:55849761-55849780 | Msa0508130:intron | 30.0% | |
| ! | CACCGTTATCCTAAATATTT+TGG | - | chr3_4:55849942-55849961 | None:intergenic | 30.0% |
| ! | CAAAATATTTAGGATAACGG+TGG | + | chr3_4:55849940-55849959 | Msa0508130:intron | 30.0% |
| GAGAGTTTCTAAATTCTTTC+AGG | - | chr3_4:55850067-55850086 | None:intergenic | 30.0% | |
| ! | TTTTAATAATGTGACCTGCA+TGG | + | chr3_4:55850171-55850190 | Msa0508130:intron | 30.0% |
| AGGAATATATATAAAGGGGT+TGG | - | chr3_4:55850546-55850565 | None:intergenic | 30.0% | |
| ! | CAAACAGATTTTACATGGTT+TGG | - | chr3_4:55850695-55850714 | None:intergenic | 30.0% |
| AACATTACAAAATTAGGAGG+AGG | - | chr3_4:55850787-55850806 | None:intergenic | 30.0% | |
| CACAACATTACAAAATTAGG+AGG | - | chr3_4:55850790-55850809 | None:intergenic | 30.0% | |
| CCTTCAAAATCAAATCTTGT+TGG | - | chr3_4:55850974-55850993 | None:intergenic | 30.0% | |
| !! | CCAACAAGATTTGATTTTGA+AGG | + | chr3_4:55850971-55850990 | Msa0508130:intron | 30.0% |
| TCCATGTAAATATTCATGTC+AGG | + | chr3_4:55851034-55851053 | Msa0508130:intron | 30.0% | |
| ACCTGACATGAATATTTACA+TGG | - | chr3_4:55851038-55851057 | None:intergenic | 30.0% | |
| GTGAACAAAATGAAAGCAAT+AGG | - | chr3_4:55851193-55851212 | None:intergenic | 30.0% | |
| AAACCATTGTCGTTACTATT+GGG | + | chr3_4:55851223-55851242 | Msa0508130:five_prime_UTR | 30.0% | |
| TTTAACTGATATACTTCGGA+CGG | + | chr3_4:55851294-55851313 | Msa0508130:CDS | 30.0% | |
| ATCAAGTTCTACATTTAAGG+AGG | - | chr3_4:55851433-55851452 | None:intergenic | 30.0% | |
| !! | AGAGAATCCTTCCATTTTTA+TGG | - | chr3_4:55851516-55851535 | None:intergenic | 30.0% |
| CAGCAAAAATACTTATCCAT+AGG | - | chr3_4:55851557-55851576 | None:intergenic | 30.0% | |
| !! | CTATGGATAAGTATTTTTGC+TGG | + | chr3_4:55851555-55851574 | Msa0508130:intron | 30.0% |
| AATTTGATTGGATCAAACCA+AGG | + | chr3_4:55851595-55851614 | Msa0508130:intron | 30.0% | |
| ATCTTGATAAGTGATAACCT+TGG | - | chr3_4:55851615-55851634 | None:intergenic | 30.0% | |
| TTCTTCATTTCAACTCAACT+GGG | - | chr3_4:55851834-55851853 | None:intergenic | 30.0% | |
| TTTCTTCATTTCAACTCAAC+TGG | - | chr3_4:55851835-55851854 | None:intergenic | 30.0% | |
| TCTTGTAAGTTTAGTAGGAT+CGG | - | chr3_4:55852254-55852273 | None:intergenic | 30.0% | |
| !! | ATCAAGATTTTGACCAAGAT+CGG | - | chr3_4:55852331-55852350 | None:intergenic | 30.0% |
| ! | AGTTTGATAGCATATGTTCT+AGG | + | chr3_4:55852372-55852391 | Msa0508130:intron | 30.0% |
| ! | AAAGACACGTTTTCTGTATA+TGG | + | chr3_4:55852401-55852420 | Msa0508130:intron | 30.0% |
| !! | AAAGCTCTGAATAAAACAGA+GGG | - | chr3_4:55852619-55852638 | None:intergenic | 30.0% |
| TGTTTGATATTCATGTATGG+AGG | + | chr3_4:55852748-55852767 | Msa0508130:intron | 30.0% | |
| ATGTGTTTAACAGGAGATAA+AGG | - | chr3_4:55852824-55852843 | None:intergenic | 30.0% | |
| ! | CATGTATAAATTTTCTGTCC+TGG | + | chr3_4:55852841-55852860 | Msa0508130:intron | 30.0% |
| !! | TTCAACCTTTAAAATTTCCC+AGG | - | chr3_4:55852862-55852881 | None:intergenic | 30.0% |
| !! | ATTTCCTACAAGTTGGTATA+TGG | - | chr3_4:55853180-55853199 | None:intergenic | 30.0% |
| ! | TGAAGTTATTTCCTACAAGT+TGG | - | chr3_4:55853187-55853206 | None:intergenic | 30.0% |
| ! | ATAACTTCACATTAGCTTGA+AGG | + | chr3_4:55853198-55853217 | Msa0508130:intron | 30.0% |
| AAGTTGTCTTATAATAGGCT+TGG | + | chr3_4:55853376-55853395 | Msa0508130:intron | 30.0% | |
| AGTTGTCTTATAATAGGCTT+GGG | + | chr3_4:55853377-55853396 | Msa0508130:intron | 30.0% | |
| TATGGGAACCATTTAATAAC+TGG | - | chr3_4:55853561-55853580 | None:intergenic | 30.0% | |
| CAAATAATACATGCACCAAA+TGG | + | chr3_4:55853785-55853804 | Msa0508130:intron | 30.0% | |
| ! | GCATTCCTTTTTGCTAATTA+TGG | - | chr3_4:55854023-55854042 | None:intergenic | 30.0% |
| AATTAGCAAAAAGGAATGCA+TGG | + | chr3_4:55854024-55854043 | Msa0508130:intron | 30.0% | |
| ! | GTGTTATTGCCAAATGTATT+AGG | - | chr3_4:55854074-55854093 | None:intergenic | 30.0% |
| !! | AAATTTAAAAGTGTCCGACA+AGG | + | chr3_4:55854154-55854173 | Msa0508130:CDS | 30.0% |
| TGAAATCCAAATTCTTGCTT+TGG | + | chr3_4:55854218-55854237 | Msa0508130:CDS | 30.0% | |
| CTTCTGCATATTTCTTTATG+TGG | + | chr3_4:55854482-55854501 | Msa0508130:intron | 30.0% | |
| AAAAATGGCAAACGCAAATA+AGG | - | chr3_4:55854522-55854541 | None:intergenic | 30.0% | |
| !!! | TATTTGCGTTTGCCATTTTT+TGG | + | chr3_4:55854522-55854541 | Msa0508130:intron | 30.0% |
| !!! | ATTTGCGTTTGCCATTTTTT+GGG | + | chr3_4:55854523-55854542 | Msa0508130:intron | 30.0% |
| TTCAATGATAGGCCCAAAAA+AGG | + | chr3_4:55849060-55849079 | Msa0508130:five_prime_UTR | 35.0% | |
| TGGGATTTAGGTAACTTTCA+TGG | - | chr3_4:55849099-55849118 | None:intergenic | 35.0% | |
| AAGAAGAAGAAGTGGGATTT+AGG | - | chr3_4:55849111-55849130 | None:intergenic | 35.0% | |
| CAACAAGAAGAAGAAGAAGT+GGG | - | chr3_4:55849118-55849137 | None:intergenic | 35.0% | |
| TCAACAAGAAGAAGAAGAAG+TGG | - | chr3_4:55849119-55849138 | None:intergenic | 35.0% | |
| TAAGTAACGCTACTCTTGTA+CGG | + | chr3_4:55849301-55849320 | Msa0508130:intron | 35.0% | |
| AGAAGCAACTTTACTCGTTA+CGG | - | chr3_4:55849363-55849382 | None:intergenic | 35.0% | |
| AACCCTTCAAATGGGAAAAT+CGG | - | chr3_4:55849444-55849463 | None:intergenic | 35.0% | |
| GCAAATGTAACCCTTCAAAT+GGG | - | chr3_4:55849452-55849471 | None:intergenic | 35.0% | |
| AGCAAATGTAACCCTTCAAA+TGG | - | chr3_4:55849453-55849472 | None:intergenic | 35.0% | |
| !!! | TTTTTAGTTATGGGCTTGTG+TGG | + | chr3_4:55849603-55849622 | Msa0508130:intron | 35.0% |
| CTATGCATCTCAACAGAAAA+AGG | - | chr3_4:55849867-55849886 | None:intergenic | 35.0% | |
| ! | CTTTTTCTGTTGAGATGCAT+AGG | + | chr3_4:55849865-55849884 | Msa0508130:intron | 35.0% |
| ATGCATAGGTTCATGGTAAT+GGG | + | chr3_4:55849879-55849898 | Msa0508130:intron | 35.0% | |
| ACTCTCTTATTGTTCGTTGA+TGG | + | chr3_4:55850081-55850100 | Msa0508130:intron | 35.0% | |
| CTCTCTTATTGTTCGTTGAT+GGG | + | chr3_4:55850082-55850101 | Msa0508130:intron | 35.0% | |
| CTGTACAGTGTTAATCCATA+CGG | + | chr3_4:55850139-55850158 | Msa0508130:intron | 35.0% | |
| ! | ATCACTGGTTGGAAATTTCA+CGG | + | chr3_4:55850219-55850238 | Msa0508130:intron | 35.0% |
| ATAATCCACAATCGACACAA+CGG | - | chr3_4:55850380-55850399 | None:intergenic | 35.0% | |
| CGCTCCAAAACCAAAATATT+GGG | - | chr3_4:55850498-55850517 | None:intergenic | 35.0% | |
| !!! | GTTTTGGAGCGCAAATATTA+AGG | + | chr3_4:55850507-55850526 | Msa0508130:intron | 35.0% |
| AAGTTAGAGACTGAACTATG+TGG | - | chr3_4:55851093-55851112 | None:intergenic | 35.0% | |
| CAAACCATTGTCGTTACTAT+TGG | + | chr3_4:55851222-55851241 | Msa0508130:five_prime_UTR | 35.0% | |
| CATCAATCTTGCTCAAAAAG+GGG | - | chr3_4:55851715-55851734 | None:intergenic | 35.0% | |
| GCATCAATCTTGCTCAAAAA+GGG | - | chr3_4:55851716-55851735 | None:intergenic | 35.0% | |
| TGCATCAATCTTGCTCAAAA+AGG | - | chr3_4:55851717-55851736 | None:intergenic | 35.0% | |
| ATTGCTCTGTGTATATGTCT+TGG | + | chr3_4:55851932-55851951 | Msa0508130:intron | 35.0% | |
| TTGCTCTGTGTATATGTCTT+GGG | + | chr3_4:55851933-55851952 | Msa0508130:intron | 35.0% | |
| !!! | GGGCTCAGTTTTTTGTTTTT+TGG | + | chr3_4:55851954-55851973 | Msa0508130:intron | 35.0% |
| CTGCATTCATGATTTGATCT+AGG | + | chr3_4:55851984-55852003 | Msa0508130:intron | 35.0% | |
| CTTGTAAGTTTAGTAGGATC+GGG | - | chr3_4:55852253-55852272 | None:intergenic | 35.0% | |
| GATCCTACTAAACTTACAAG+AGG | + | chr3_4:55852253-55852272 | Msa0508130:intron | 35.0% | |
| GATCCTCTTGTAAGTTTAGT+AGG | - | chr3_4:55852259-55852278 | None:intergenic | 35.0% | |
| CTATCAAACTGTTTGATCCA+AGG | - | chr3_4:55852362-55852381 | None:intergenic | 35.0% | |
| TATAATGTGTCTCATTGCTG+TGG | + | chr3_4:55852551-55852570 | Msa0508130:intron | 35.0% | |
| !! | GAAAGCTCTGAATAAAACAG+AGG | - | chr3_4:55852620-55852639 | None:intergenic | 35.0% |
| ! | TCAAACAATAGAAGGAGTGT+TGG | - | chr3_4:55852735-55852754 | None:intergenic | 35.0% |
| TTGATATTCATGTATGGAGG+AGG | + | chr3_4:55852751-55852770 | Msa0508130:intron | 35.0% | |
| TGATATTCATGTATGGAGGA+GGG | + | chr3_4:55852752-55852771 | Msa0508130:intron | 35.0% | |
| ! | TCTGTCCTGGGAAATTTTAA+AGG | + | chr3_4:55852854-55852873 | Msa0508130:intron | 35.0% |
| ! | GATATGTTGTTTGCAGAGTA+AGG | - | chr3_4:55852891-55852910 | None:intergenic | 35.0% |
| TCTCGAGGATAGATTCATTA+AGG | - | chr3_4:55852952-55852971 | None:intergenic | 35.0% | |
| GATACCATATACCAACTTGT+AGG | + | chr3_4:55853173-55853192 | Msa0508130:intron | 35.0% | |
| ! | TTCAAAGTTGGTTGTACTCA+TGG | - | chr3_4:55853310-55853329 | None:intergenic | 35.0% |
| GTTGTCTTATAATAGGCTTG+GGG | + | chr3_4:55853378-55853397 | Msa0508130:intron | 35.0% | |
| TGCATGCTACTATAAGATTC+AGG | - | chr3_4:55853405-55853424 | None:intergenic | 35.0% | |
| !!! | TTGCACTCAATTTTTGGAAC+AGG | + | chr3_4:55853463-55853482 | Msa0508130:intron | 35.0% |
| !!! | TGCACTCAATTTTTGGAACA+GGG | + | chr3_4:55853464-55853483 | Msa0508130:intron | 35.0% |
| TTAGATACAACTGACCCAAA+TGG | - | chr3_4:55853502-55853521 | None:intergenic | 35.0% | |
| TATGCTAGTGTAAACCCATT+TGG | - | chr3_4:55853803-55853822 | None:intergenic | 35.0% | |
| GACTTGTGCAAGTACAAATT+TGG | + | chr3_4:55853861-55853880 | Msa0508130:intron | 35.0% | |
| TACTAGGAAGGAACATTTCA+AGG | - | chr3_4:55853899-55853918 | None:intergenic | 35.0% | |
| !! | TGGCAATAACACTGATTTAC+AGG | + | chr3_4:55854082-55854101 | Msa0508130:intron | 35.0% |
| !! | CAATAACACTGATTTACAGG+TGG | + | chr3_4:55854085-55854104 | Msa0508130:intron | 35.0% |
| TGTTTCGATCAATAACCTGT+CGG | + | chr3_4:55854189-55854208 | Msa0508130:CDS | 35.0% | |
| GTTGATCCAAAGCAAGAATT+TGG | - | chr3_4:55854227-55854246 | None:intergenic | 35.0% | |
| ! | AATTCTTGCTTTGGATCAAC+AGG | + | chr3_4:55854227-55854246 | Msa0508130:CDS | 35.0% |
| TGGCTGAAGTTTCAATAACT+TGG | + | chr3_4:55854294-55854313 | Msa0508130:intron | 35.0% | |
| GGCTGAAGTTTCAATAACTT+GGG | + | chr3_4:55854295-55854314 | Msa0508130:intron | 35.0% | |
| TGAAGTTTCAATAACTTGGG+TGG | + | chr3_4:55854298-55854317 | Msa0508130:intron | 35.0% | |
| TGGGTTTGATTCATTCTTTC+TGG | + | chr3_4:55854343-55854362 | Msa0508130:intron | 35.0% | |
| TACAAGTAAACTGAGCGTAA+AGG | - | chr3_4:55854436-55854455 | None:intergenic | 35.0% | |
| !!! | TTTGCGTTTGCCATTTTTTG+GGG | + | chr3_4:55854524-55854543 | Msa0508130:intron | 35.0% |
| !! | TGAAAGGAAGAAGTGTTGTG+TGG | - | chr3_4:55849166-55849185 | None:intergenic | 40.0% |
| CATTCATTCGTTGGATTTGG+AGG | - | chr3_4:55849229-55849248 | None:intergenic | 40.0% | |
| GTAGCGTTACTTAGGAAGAA+GGG | - | chr3_4:55849294-55849313 | None:intergenic | 40.0% | |
| AGTAGCGTTACTTAGGAAGA+AGG | - | chr3_4:55849295-55849314 | None:intergenic | 40.0% | |
| GTACAAGAGTAGCGTTACTT+AGG | - | chr3_4:55849302-55849321 | None:intergenic | 40.0% | |
| !!! | TCACCGATTTTCCCATTTGA+AGG | + | chr3_4:55849438-55849457 | Msa0508130:intron | 40.0% |
| !!! | CACCGATTTTCCCATTTGAA+GGG | + | chr3_4:55849439-55849458 | Msa0508130:intron | 40.0% |
| GGGTTACATTTGCTTGATTG+TGG | + | chr3_4:55849459-55849478 | Msa0508130:intron | 40.0% | |
| TATGAGAGAGCAAGTAACAC+TGG | + | chr3_4:55849811-55849830 | Msa0508130:intron | 40.0% | |
| TGTTGAGATGCATAGGTTCA+TGG | + | chr3_4:55849872-55849891 | Msa0508130:intron | 40.0% | |
| GATGCATAGGTTCATGGTAA+TGG | + | chr3_4:55849878-55849897 | Msa0508130:intron | 40.0% | |
| AATGTTGAACCGGTACAGTA+AGG | + | chr3_4:55849992-55850011 | Msa0508130:intron | 40.0% | |
| ATGTTGAACCGGTACAGTAA+GGG | + | chr3_4:55849993-55850012 | Msa0508130:intron | 40.0% | |
| ! | TTATTGTTCGTTGATGGGCA+GGG | + | chr3_4:55850087-55850106 | Msa0508130:intron | 40.0% |
| ! | TCACTGGTTGGAAATTTCAC+GGG | + | chr3_4:55850220-55850239 | Msa0508130:intron | 40.0% |
| AATGTAACCTACGTCAACGA+GGG | - | chr3_4:55850259-55850278 | None:intergenic | 40.0% | |
| !! | CGCATGATAGCGTTTTTATG+CGG | + | chr3_4:55850426-55850445 | Msa0508130:intron | 40.0% |
| CGCGCATTGAATCACATTAA+TGG | + | chr3_4:55850450-55850469 | Msa0508130:intron | 40.0% | |
| ! | ATCACATTAATGGACCGACT+CGG | + | chr3_4:55850460-55850479 | Msa0508130:intron | 40.0% |
| CAAAACCAAAATATTGGGCC+GGG | - | chr3_4:55850493-55850512 | None:intergenic | 40.0% | |
| CCAAAACCAAAATATTGGGC+CGG | - | chr3_4:55850494-55850513 | None:intergenic | 40.0% | |
| GCGCTCCAAAACCAAAATAT+TGG | - | chr3_4:55850499-55850518 | None:intergenic | 40.0% | |
| AATTCCGAACCAGTACGATA+AGG | + | chr3_4:55850569-55850588 | Msa0508130:intron | 40.0% | |
| !! | GTATCCTTATCGTACTGGTT+CGG | - | chr3_4:55850576-55850595 | None:intergenic | 40.0% |
| ACCAGTACGATAAGGATACT+AGG | + | chr3_4:55850577-55850596 | Msa0508130:intron | 40.0% | |
| CCAGTACGATAAGGATACTA+GGG | + | chr3_4:55850578-55850597 | Msa0508130:intron | 40.0% | |
| ! | GGTTTCTCAGAGTATCATTG+CGG | + | chr3_4:55850599-55850618 | Msa0508130:intron | 40.0% |
| ! | CGGCTCTCTTATCTATTTTC+CGG | + | chr3_4:55850619-55850638 | Msa0508130:intron | 40.0% |
| GAGAGATTCTTACTTCTCTC+CGG | - | chr3_4:55850641-55850660 | None:intergenic | 40.0% | |
| TTGTGATTGTGCTTGATGCT+TGG | + | chr3_4:55850863-55850882 | Msa0508130:intron | 40.0% | |
| TGTGATTGTGCTTGATGCTT+GGG | + | chr3_4:55850864-55850883 | Msa0508130:intron | 40.0% | |
| GTCTAGATACCTTCTGATGT+TGG | + | chr3_4:55850933-55850952 | Msa0508130:intron | 40.0% | |
| ACCTTCTGATGTTGGTATCA+TGG | + | chr3_4:55850941-55850960 | Msa0508130:intron | 40.0% | |
| CCTTCTGATGTTGGTATCAT+GGG | + | chr3_4:55850942-55850961 | Msa0508130:intron | 40.0% | |
| CTTCTGATGTTGGTATCATG+GGG | + | chr3_4:55850943-55850962 | Msa0508130:intron | 40.0% | |
| TTCTGATGTTGGTATCATGG+GGG | + | chr3_4:55850944-55850963 | Msa0508130:intron | 40.0% | |
| TTATGAACAATTGCTCCAGC+AGG | + | chr3_4:55851112-55851131 | Msa0508130:intron | 40.0% | |
| TATGAACAATTGCTCCAGCA+GGG | + | chr3_4:55851113-55851132 | Msa0508130:intron | 40.0% | |
| ACTCCCAATAGTAACGACAA+TGG | - | chr3_4:55851229-55851248 | None:intergenic | 40.0% | |
| ATCTCCCAATCTTCTTGTGA+GGG | - | chr3_4:55851325-55851344 | None:intergenic | 40.0% | |
| TATCTCCCAATCTTCTTGTG+AGG | - | chr3_4:55851326-55851345 | None:intergenic | 40.0% | |
| CACAAGAAGATTGGGAGATA+CGG | + | chr3_4:55851326-55851345 | Msa0508130:CDS | 40.0% | |
| TGAGCAAGATTGATGCAAGA+TGG | + | chr3_4:55851720-55851739 | Msa0508130:intron | 40.0% | |
| ACGCACAATCTTGCAATTTC+AGG | - | chr3_4:55851766-55851785 | None:intergenic | 40.0% | |
| !! | TTTTTGGGCTCGGATTTACT+CGG | + | chr3_4:55851797-55851816 | Msa0508130:intron | 40.0% |
| TGCTCTGTGTATATGTCTTG+GGG | + | chr3_4:55851934-55851953 | Msa0508130:intron | 40.0% | |
| TTGGTTGGATCTTACAATCG+TGG | + | chr3_4:55852191-55852210 | Msa0508130:intron | 40.0% | |
| TAAGTTTAGTAGGATCGGGA+GGG | - | chr3_4:55852249-55852268 | None:intergenic | 40.0% | |
| ATCATGCAAGATCGCAACTA+CGG | - | chr3_4:55852288-55852307 | None:intergenic | 40.0% | |
| !! | AGATTTTGACCAAGATCGGA+AGG | - | chr3_4:55852327-55852346 | None:intergenic | 40.0% |
| AATCTTGATCCTGACAACCT+TGG | + | chr3_4:55852342-55852361 | Msa0508130:intron | 40.0% | |
| TAATGTAATTAGCCCCTGCA+TGG | - | chr3_4:55852438-55852457 | None:intergenic | 40.0% | |
| ATAGGTCTGATCCTGTTACT+GGG | - | chr3_4:55852577-55852596 | None:intergenic | 40.0% | |
| TCTATCCTCGAGATATCTCA+AGG | + | chr3_4:55852959-55852978 | Msa0508130:intron | 40.0% | |
| TAGAACCTTGAGATATCTCG+AGG | - | chr3_4:55852967-55852986 | None:intergenic | 40.0% | |
| AAGAATGGAAAGAACCCACT+TGG | + | chr3_4:55853052-55853071 | Msa0508130:intron | 40.0% | |
| AGAATGGAAAGAACCCACTT+GGG | + | chr3_4:55853053-55853072 | Msa0508130:intron | 40.0% | |
| !!! | GCACTCAATTTTTGGAACAG+GGG | + | chr3_4:55853465-55853484 | Msa0508130:intron | 40.0% |
| TATCTAATCTCTTCACGCGA+TGG | + | chr3_4:55853515-55853534 | Msa0508130:CDS | 40.0% | |
| ATCTAATCTCTTCACGCGAT+GGG | + | chr3_4:55853516-55853535 | Msa0508130:CDS | 40.0% | |
| !! | CTCAAAGCTTTGAGGATGAA+AGG | + | chr3_4:55853628-55853647 | Msa0508130:CDS | 40.0% |
| TACTTGAAACTTCTGTCGCA+TGG | + | chr3_4:55853661-55853680 | Msa0508130:intron | 40.0% | |
| CATCACAAGATATGCCTTGT+CGG | - | chr3_4:55854171-55854190 | None:intergenic | 40.0% | |
| GTTTCGATCAATAACCTGTC+GGG | + | chr3_4:55854190-55854209 | Msa0508130:CDS | 40.0% | |
| CTTTGGATCAACAGGATAGA+TGG | + | chr3_4:55854235-55854254 | Msa0508130:CDS | 40.0% | |
| CTACAACCAGATCATGAAAG+CGG | - | chr3_4:55854261-55854280 | None:intergenic | 40.0% | |
| CTTTCATGATCTGGTTGTAG+TGG | + | chr3_4:55854261-55854280 | Msa0508130:CDS | 40.0% | |
| TTCTGGGCTAACAATTGCTT+GGG | + | chr3_4:55854324-55854343 | Msa0508130:intron | 40.0% | |
| !! | TCATTCTTTCTGGCTTGTGT+AGG | + | chr3_4:55854353-55854372 | Msa0508130:intron | 40.0% |
| ACTTGTAATCTTCCACCTTC+AGG | + | chr3_4:55854449-55854468 | Msa0508130:CDS | 40.0% | |
| AGAAATATGCAGAAGCAGAG+AGG | - | chr3_4:55854477-55854496 | None:intergenic | 40.0% | |
| !!! | TTGCGTTTGCCATTTTTTGG+GGG | + | chr3_4:55854525-55854544 | Msa0508130:intron | 40.0% |
| TGGTCAATGTAGCAGATTCT+TGG | + | chr3_4:55854549-55854568 | Msa0508130:intron | 40.0% | |
| TCATTCGTTGGATTTGGAGG+CGG | - | chr3_4:55849226-55849245 | None:intergenic | 45.0% | |
| ! | TTTAGGATAACGGTGGGAGT+CGG | + | chr3_4:55849947-55849966 | Msa0508130:intron | 45.0% |
| CTATCACTCCCTTACTGTAC+CGG | - | chr3_4:55850004-55850023 | None:intergenic | 45.0% | |
| GGTACAGTAAGGGAGTGATA+GGG | + | chr3_4:55850003-55850022 | Msa0508130:intron | 45.0% | |
| ! | GGTTTCTCAGTGTATCGATG+CGG | + | chr3_4:55850024-55850043 | Msa0508130:intron | 45.0% |
| ! | CTTATTGTTCGTTGATGGGC+AGG | + | chr3_4:55850086-55850105 | Msa0508130:intron | 45.0% |
| CAATGTAACCTACGTCAACG+AGG | - | chr3_4:55850260-55850279 | None:intergenic | 45.0% | |
| GAATGCACACGTATTCTACG+TGG | - | chr3_4:55850289-55850308 | None:intergenic | 45.0% | |
| GACACAACGGTAGAGAATCT+TGG | - | chr3_4:55850367-55850386 | None:intergenic | 45.0% | |
| ! | AGTAACCCGGCCCAATATTT+TGG | + | chr3_4:55850485-55850504 | Msa0508130:intron | 45.0% |
| !!! | CCGGCCCAATATTTTGGTTT+TGG | + | chr3_4:55850491-55850510 | Msa0508130:intron | 45.0% |
| !! | CGTACTGGTTCGGAATTACA+AGG | - | chr3_4:55850566-55850585 | None:intergenic | 45.0% |
| CCCTAGTATCCTTATCGTAC+TGG | - | chr3_4:55850581-55850600 | None:intergenic | 45.0% | |
| CAATTTGACCTACATCCACG+CGG | - | chr3_4:55850671-55850690 | None:intergenic | 45.0% | |
| CCCATGATACCAACATCAGA+AGG | - | chr3_4:55850945-55850964 | None:intergenic | 45.0% | |
| TCTGATGTTGGTATCATGGG+GGG | + | chr3_4:55850945-55850964 | Msa0508130:intron | 45.0% | |
| !! | ATGTCCTTTGAAATCCCTGC+TGG | - | chr3_4:55851130-55851149 | None:intergenic | 45.0% |
| CAGGGATTTCAAAGGACATG+AGG | + | chr3_4:55851131-55851150 | Msa0508130:intron | 45.0% | |
| TGACACCCTCACAAGAAGAT+TGG | + | chr3_4:55851317-55851336 | Msa0508130:CDS | 45.0% | |
| GACACCCTCACAAGAAGATT+GGG | + | chr3_4:55851318-55851337 | Msa0508130:CDS | 45.0% | |
| TTTACCTCTCAGACTCTCCA+CGG | - | chr3_4:55851389-55851408 | None:intergenic | 45.0% | |
| ATCTTGCGTGCAAGTCAGAT+CGG | - | chr3_4:55851692-55851711 | None:intergenic | 45.0% | |
| ! | TGCGTGATCCTGAGTGTTTT+TGG | + | chr3_4:55851781-55851800 | Msa0508130:intron | 45.0% |
| ! | GCGTGATCCTGAGTGTTTTT+GGG | + | chr3_4:55851782-55851801 | Msa0508130:intron | 45.0% |
| !!! | ATCCTGAGTGTTTTTGGGCT+CGG | + | chr3_4:55851787-55851806 | Msa0508130:intron | 45.0% |
| AGGCAGAGATGGTTGTTAGA+GGG | - | chr3_4:55851890-55851909 | None:intergenic | 45.0% | |
| AAGGCAGAGATGGTTGTTAG+AGG | - | chr3_4:55851891-55851910 | None:intergenic | 45.0% | |
| AAGTTTAGTAGGATCGGGAG+GGG | - | chr3_4:55852248-55852267 | None:intergenic | 45.0% | |
| GTAAGTTTAGTAGGATCGGG+AGG | - | chr3_4:55852250-55852269 | None:intergenic | 45.0% | |
| TTTGACCAAGATCGGAAGGT+GGG | - | chr3_4:55852323-55852342 | None:intergenic | 45.0% | |
| ! | TTTTGACCAAGATCGGAAGG+TGG | - | chr3_4:55852324-55852343 | None:intergenic | 45.0% |
| CTGTTTGATCCAAGGTTGTC+AGG | - | chr3_4:55852354-55852373 | None:intergenic | 45.0% | |
| TGGTGAAAGAAGATCCATGC+AGG | + | chr3_4:55852421-55852440 | Msa0508130:intron | 45.0% | |
| GGTGAAAGAAGATCCATGCA+GGG | + | chr3_4:55852422-55852441 | Msa0508130:intron | 45.0% | |
| GTGAAAGAAGATCCATGCAG+GGG | + | chr3_4:55852423-55852442 | Msa0508130:intron | 45.0% | |
| CATAGGTCTGATCCTGTTAC+TGG | - | chr3_4:55852578-55852597 | None:intergenic | 45.0% | |
| GTAACAGGATCAGACCTATG+TGG | + | chr3_4:55852578-55852597 | Msa0508130:intron | 45.0% | |
| ATAGAACCTGAGACCTTGAG+AGG | - | chr3_4:55853118-55853137 | None:intergenic | 45.0% | |
| GGGCAACTGTTGAACCATTT+GGG | + | chr3_4:55853485-55853504 | Msa0508130:CDS | 45.0% | |
| TCTAATCTCTTCACGCGATG+GGG | + | chr3_4:55853517-55853536 | Msa0508130:CDS | 45.0% | |
| GTTCCCATATTGGATCTGCT+GGG | + | chr3_4:55853572-55853591 | Msa0508130:CDS | 45.0% | |
| TCTCCCAGCAGATCCAATAT+GGG | - | chr3_4:55853578-55853597 | None:intergenic | 45.0% | |
| TTCTCCCAGCAGATCCAATA+TGG | - | chr3_4:55853579-55853598 | None:intergenic | 45.0% | |
| AACTTCTGTCGCATGGAAGT+TGG | + | chr3_4:55853668-55853687 | Msa0508130:intron | 45.0% | |
| AGAATGGGAACTCTTGCACT+GGG | - | chr3_4:55854133-55854152 | None:intergenic | 45.0% | |
| TAGAATGGGAACTCTTGCAC+TGG | - | chr3_4:55854134-55854153 | None:intergenic | 45.0% | |
| GTTGTAGTGGTACGTTCTTG+TGG | + | chr3_4:55854274-55854293 | Msa0508130:intron | 45.0% | |
| AATAACTTGGGTGGCTGTTC+TGG | + | chr3_4:55854307-55854326 | Msa0508130:intron | 45.0% | |
| ATAACTTGGGTGGCTGTTCT+GGG | + | chr3_4:55854308-55854327 | Msa0508130:intron | 45.0% | |
| ! | GTTCTGGGCTAACAATTGCT+TGG | + | chr3_4:55854323-55854342 | Msa0508130:intron | 45.0% |
| !! | TTTCTGGCTTGTGTAGGTGA+AGG | + | chr3_4:55854359-55854378 | Msa0508130:intron | 45.0% |
| !!! | TGCGTTTGCCATTTTTTGGG+GGG | + | chr3_4:55854526-55854545 | Msa0508130:intron | 45.0% |
| ATTGACCACCCCCCAAAAAA+TGG | - | chr3_4:55854537-55854556 | None:intergenic | 45.0% | |
| !!! | ATTTTTTGTTTTTTTTTTTA+TGG | + | chr3_4:55852107-55852126 | Msa0508130:intron | 5.0% |
| !!! | TTATTTGTATTTTTAAATTT+AGG | - | chr3_4:55853772-55853791 | None:intergenic | 5.0% |
| GGATTTGGAGGCGGGAAAAA+GGG | - | chr3_4:55849217-55849236 | None:intergenic | 50.0% | |
| TGGATTTGGAGGCGGGAAAA+AGG | - | chr3_4:55849218-55849237 | None:intergenic | 50.0% | |
| CATTCGTTGGATTTGGAGGC+GGG | - | chr3_4:55849225-55849244 | None:intergenic | 50.0% | |
| ATGGGCTTGTGTGGTTGAGT+TGG | + | chr3_4:55849612-55849631 | Msa0508130:intron | 50.0% | |
| CGGTACAGTAAGGGAGTGAT+AGG | + | chr3_4:55850002-55850021 | Msa0508130:intron | 50.0% | |
| ! | AGCCTGCAGTGGATTTCTCA+CGG | - | chr3_4:55850121-55850140 | None:intergenic | 50.0% |
| TAACACTGTACAGCCTGCAG+TGG | - | chr3_4:55850132-55850151 | None:intergenic | 50.0% | |
| AATTGAGTGGGGGAGATCAC+TGG | + | chr3_4:55850204-55850223 | Msa0508130:intron | 50.0% | |
| TTTCCTTCCCTCGTTGACGT+AGG | + | chr3_4:55850249-55850268 | Msa0508130:intron | 50.0% | |
| TAACCTACGTCAACGAGGGA+AGG | - | chr3_4:55850255-55850274 | None:intergenic | 50.0% | |
| !! | CTCTACCGTTGTGTCGATTG+TGG | + | chr3_4:55850372-55850391 | Msa0508130:intron | 50.0% |
| TGCTCCAGCAGGGATTTCAA+AGG | + | chr3_4:55851123-55851142 | Msa0508130:intron | 50.0% | |
| ATCCGAGCCCAAAAACACTC+AGG | - | chr3_4:55851792-55851811 | None:intergenic | 50.0% | |
| GAGAGAGTGAAAGGCAGAGA+TGG | - | chr3_4:55851901-55851920 | None:intergenic | 50.0% | |
| AGTTTAGTAGGATCGGGAGG+GGG | - | chr3_4:55852247-55852266 | None:intergenic | 50.0% | |
| AGGATCAGACCTATGTGGCA+GGG | + | chr3_4:55852583-55852602 | Msa0508130:intron | 50.0% | |
| TGGAAAGAACCCACTTGGGT+TGG | + | chr3_4:55853057-55853076 | Msa0508130:intron | 50.0% | |
| ACTACCAGACCAACCCAAGT+GGG | - | chr3_4:55853069-55853088 | None:intergenic | 50.0% | |
| !! | TTGGGTTGGTCTGGTAGTGT+TGG | + | chr3_4:55853071-55853090 | Msa0508130:intron | 50.0% |
| !! | TTGGTCTGGTAGTGTTGGCT+TGG | + | chr3_4:55853076-55853095 | Msa0508130:intron | 50.0% |
| !! | TGGTCTGGTAGTGTTGGCTT+GGG | + | chr3_4:55853077-55853096 | Msa0508130:intron | 50.0% |
| CTTGAGAGGAGCAAACTCGA+AGG | - | chr3_4:55853104-55853123 | None:intergenic | 50.0% | |
| ! | CTTCGAGTTTGCTCCTCTCA+AGG | + | chr3_4:55853102-55853121 | Msa0508130:intron | 50.0% |
| TTTGCTCCTCTCAAGGTCTC+AGG | + | chr3_4:55853109-55853128 | Msa0508130:intron | 50.0% | |
| GGGGCAACTGTTGAACCATT+TGG | + | chr3_4:55853484-55853503 | Msa0508130:intron | 50.0% | |
| GGTTCCCATATTGGATCTGC+TGG | + | chr3_4:55853571-55853590 | Msa0508130:CDS | 50.0% | |
| ! | CAGTTTTGCAGGACTGAGTC+AGG | - | chr3_4:55853739-55853758 | None:intergenic | 50.0% |
| CTGACTCAGTCCTGCAAAAC+TGG | + | chr3_4:55853737-55853756 | Msa0508130:intron | 50.0% | |
| ! | GAGAATCAGGCCAGTTTTGC+AGG | - | chr3_4:55853750-55853769 | None:intergenic | 50.0% |
| GAATGGGAACTCTTGCACTG+GGG | - | chr3_4:55854132-55854151 | None:intergenic | 50.0% | |
| TGGATTTCATCAAGCCCGAC+AGG | - | chr3_4:55854207-55854226 | None:intergenic | 50.0% | |
| ! | AGATGGCCGCTTTCATGATC+TGG | + | chr3_4:55854252-55854271 | Msa0508130:CDS | 50.0% |
| GCTTGTGTAGGTGAAGGAGT+GGG | + | chr3_4:55854365-55854384 | Msa0508130:intron | 50.0% | |
| !! | AGAAGCAGAGAGGTACCTGA+AGG | - | chr3_4:55854467-55854486 | None:intergenic | 50.0% |
| !!! | GTTTGCCATTTTTTGGGGGG+TGG | + | chr3_4:55854529-55854548 | Msa0508130:intron | 50.0% |
| TCCCGTGAGAAATCCACTGC+AGG | + | chr3_4:55850116-55850135 | Msa0508130:intron | 55.0% | |
| ! | GCCTGCAGTGGATTTCTCAC+GGG | - | chr3_4:55850120-55850139 | None:intergenic | 55.0% |
| !! | GACCGACTCGGATAGTAACC+CGG | + | chr3_4:55850472-55850491 | Msa0508130:intron | 55.0% |
| GAATCCGTGGAGAGTCTGAG+AGG | + | chr3_4:55851382-55851401 | Msa0508130:CDS | 55.0% | |
| CAAGTCAGATCGGAAGGGGT+GGG | - | chr3_4:55851682-55851701 | None:intergenic | 55.0% | |
| CGTGCAAGTCAGATCGGAAG+GGG | - | chr3_4:55851686-55851705 | None:intergenic | 55.0% | |
| GCGTGCAAGTCAGATCGGAA+GGG | - | chr3_4:55851687-55851706 | None:intergenic | 55.0% | |
| TGCGTGCAAGTCAGATCGGA+AGG | - | chr3_4:55851688-55851707 | None:intergenic | 55.0% | |
| CCAAGTCGCGAGAGAGTGAA+AGG | - | chr3_4:55851910-55851929 | None:intergenic | 55.0% | |
| CCTTTCACTCTCTCGCGACT+TGG | + | chr3_4:55851907-55851926 | Msa0508130:intron | 55.0% | |
| TGCTACCCACCTTCCGATCT+TGG | + | chr3_4:55852315-55852334 | Msa0508130:intron | 55.0% | |
| CATTGCTGTGGCCCAGTAAC+AGG | + | chr3_4:55852563-55852582 | Msa0508130:intron | 55.0% | |
| CAGGATCAGACCTATGTGGC+AGG | + | chr3_4:55852582-55852601 | Msa0508130:intron | 55.0% | |
| GCTAGTCATCCCTGCCACAT+AGG | - | chr3_4:55852595-55852614 | None:intergenic | 55.0% | |
| !! | AGAACCCACTTGGGTTGGTC+TGG | + | chr3_4:55853062-55853081 | Msa0508130:intron | 55.0% |
| CACTACCAGACCAACCCAAG+TGG | - | chr3_4:55853070-55853089 | None:intergenic | 55.0% | |
| GGCTTGTGTAGGTGAAGGAG+TGG | + | chr3_4:55854364-55854383 | Msa0508130:intron | 55.0% | |
| !! | AGCAGAGAGGTACCTGAAGG+TGG | - | chr3_4:55854464-55854483 | None:intergenic | 55.0% |
| GAGTGGGGGAGATCACTGGT+TGG | + | chr3_4:55850208-55850227 | Msa0508130:intron | 60.0% | |
| GGCCGGGTTACTATCCGAGT+CGG | - | chr3_4:55850477-55850496 | None:intergenic | 60.0% | |
| AATCTCTCTCCCTGTCCGCG+TGG | + | chr3_4:55850653-55850672 | Msa0508130:intron | 60.0% | |
| GACCTACATCCACGCGGACA+GGG | - | chr3_4:55850665-55850684 | None:intergenic | 60.0% | |
| TGACCTACATCCACGCGGAC+AGG | - | chr3_4:55850666-55850685 | None:intergenic | 60.0% | |
| ATCGGAAGGGGTGGGTGAGT+AGG | - | chr3_4:55851674-55851693 | None:intergenic | 60.0% | |
| GCAAGTCAGATCGGAAGGGG+TGG | - | chr3_4:55851683-55851702 | None:intergenic | 60.0% | |
| CTTCACGCGATGGGGTGACT+TGG | + | chr3_4:55853525-55853544 | Msa0508130:CDS | 60.0% | |
| CTCCCTGTCCGCGTGGATGT+AGG | + | chr3_4:55850660-55850679 | Msa0508130:intron | 65.0% | |
| !! | GCGAAGCGCTGCTGAATCCG+TGG | + | chr3_4:55851369-55851388 | Msa0508130:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 55849056 | 55854623 | 55849056 | ID=Msa0508130;Name=Msa0508130 |
| chr3_4 | mRNA | 55849056 | 55854623 | 55849056 | ID=Msa0508130-mRNA-1;Parent=Msa0508130;Name=Msa0508130-mRNA-1;_AED=0.07;_eAED=0.07;_QI=329|0.8|0.66|0.83|0.8|0.66|6|0|194 |
| chr3_4 | exon | 55849056 | 55849253 | 55849056 | ID=Msa0508130-mRNA-1:exon:12495;Parent=Msa0508130-mRNA-1 |
| chr3_4 | exon | 55851134 | 55851403 | 55851134 | ID=Msa0508130-mRNA-1:exon:12496;Parent=Msa0508130-mRNA-1 |
| chr3_4 | exon | 55853485 | 55853649 | 55853485 | ID=Msa0508130-mRNA-1:exon:12497;Parent=Msa0508130-mRNA-1 |
| chr3_4 | exon | 55854104 | 55854282 | 55854104 | ID=Msa0508130-mRNA-1:exon:12498;Parent=Msa0508130-mRNA-1 |
| chr3_4 | exon | 55854375 | 55854470 | 55854375 | ID=Msa0508130-mRNA-1:exon:12499;Parent=Msa0508130-mRNA-1 |
| chr3_4 | exon | 55854618 | 55854623 | 55854618 | ID=Msa0508130-mRNA-1:exon:12500;Parent=Msa0508130-mRNA-1 |
| chr3_4 | five_prime_UTR | 55849056 | 55849253 | 55849056 | ID=Msa0508130-mRNA-1:five_prime_utr;Parent=Msa0508130-mRNA-1 |
| chr3_4 | five_prime_UTR | 55851134 | 55851264 | 55851134 | ID=Msa0508130-mRNA-1:five_prime_utr;Parent=Msa0508130-mRNA-1 |
| chr3_4 | CDS | 55851265 | 55851403 | 55851265 | ID=Msa0508130-mRNA-1:cds;Parent=Msa0508130-mRNA-1 |
| chr3_4 | CDS | 55853485 | 55853649 | 55853485 | ID=Msa0508130-mRNA-1:cds;Parent=Msa0508130-mRNA-1 |
| chr3_4 | CDS | 55854104 | 55854282 | 55854104 | ID=Msa0508130-mRNA-1:cds;Parent=Msa0508130-mRNA-1 |
| chr3_4 | CDS | 55854375 | 55854470 | 55854375 | ID=Msa0508130-mRNA-1:cds;Parent=Msa0508130-mRNA-1 |
| chr3_4 | CDS | 55854618 | 55854623 | 55854618 | ID=Msa0508130-mRNA-1:cds;Parent=Msa0508130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
