AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0225460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0225460 MtrunA17_Chr2g0331991 98.875 711 7 1 1 710 1 711 0.0 1434
Msa0225460 MtrunA17_Chr4g0004211 59.181 708 205 13 2 707 32 657 0.0 790
Msa0225460 MtrunA17_Chr4g0034861 60.088 684 211 12 31 710 9 634 0.0 739
Msa0225460 MtrunA17_Chr3g0141921 31.026 419 201 12 298 708 123 461 1.10e-37 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0225460 AT3G15940.2 61.919 688 248 7 32 708 12 696 0.0 808
Msa0225460 AT3G15940.1 61.919 688 248 7 32 708 12 696 0.0 808
Msa0225460 AT1G52420.1 60.347 691 242 12 24 708 5 669 0.0 800
Msa0225460 AT1G19710.1 31.296 409 190 15 305 703 134 461 3.81e-36 142
Msa0225460 AT1G75420.2 42.384 151 83 3 553 703 219 365 9.07e-23 101
Msa0225460 AT1G75420.3 42.384 151 83 3 553 703 278 424 1.10e-22 102
Msa0225460 AT1G75420.1 42.384 151 83 3 553 703 304 450 1.40e-22 102

Find 174 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGTTCTCGGAACGGATTC+TGG 0.131653 2_1:-75589759 Msa0225460:CDS
GATCTCCTGCTCTTCTTCTT+TGG 0.146647 2_1:+75593323 None:intergenic
AAGCAATAGCTGGCCCTTTC+CGG 0.189848 2_1:+75591565 None:intergenic
CTATTGGTTTGAGGAATTTC+TGG 0.194960 2_1:+75593227 None:intergenic
ACGACCTACCTGAGAGTTTA+TGG 0.200248 2_1:+75591055 None:intergenic
ATAATCCACCTTGTTACTTT+TGG 0.226187 2_1:+75591190 None:intergenic
AAGGAATGTGTATTTCTAAA+AGG 0.229381 2_1:-75593895 Msa0225460:five_prime_UTR
ATCTCCTGCTCTTCTTCTTT+GGG 0.236327 2_1:+75593324 None:intergenic
CTCAACAGAAGATAGGATTT+TGG 0.248236 2_1:-75593174 Msa0225460:CDS
CAGCAATAGAGGTGAATTTC+AGG 0.300352 2_1:-75593810 Msa0225460:CDS
GTTCAAGATTGAAGCATTGT+AGG 0.311791 2_1:-75593942 Msa0225460:five_prime_UTR
GGGACTTTGCACGCCTTGTT+TGG 0.322335 2_1:-75593109 Msa0225460:CDS
AGCAATAGCTGGCCCTTTCC+GGG 0.327800 2_1:+75591566 None:intergenic
CCATTTGCTTCCTTGCCAAC+TGG 0.333918 2_1:+75589628 None:intergenic
AATGAGACGGTTAGAAATAA+AGG 0.341557 2_1:-75593425 Msa0225460:CDS
GCATCTACGCCGGTATTTCT+TGG 0.344521 2_1:+75593503 None:intergenic
GGCTGCTTCTAATTACCCTC+TGG 0.345486 2_1:-75593604 Msa0225460:CDS
AAAGTTCTCATTGGTTCTGT+TGG 0.360825 2_1:-75591215 Msa0225460:CDS
TCCACTCTCAATGTTGGAAT+TGG 0.362265 2_1:-75593039 Msa0225460:CDS
AGCAATGGCATTTGGTCTTC+CGG 0.371847 2_1:-75590405 Msa0225460:intron
ACAGACAAAGGAACAGTTGC+AGG 0.371888 2_1:+75591755 None:intergenic
AGGAAAGAAGGAAGAACTTT+TGG 0.372630 2_1:-75593665 Msa0225460:CDS
GGGGATAGAAGGCAGGAAAA+AGG 0.376967 2_1:-75589607 Msa0225460:CDS
GACGGAGTGTTAAGTGTAGA+AGG 0.388857 2_1:+75591701 None:intergenic
GGATTACTCGTCGGTCCATT+TGG 0.392207 2_1:-75593197 Msa0225460:CDS
TTTGTCTGTTAATGATGAAC+TGG 0.392335 2_1:-75591741 Msa0225460:CDS
AGAATCGGTCCGAAAAGAAA+TGG 0.395205 2_1:-75591636 Msa0225460:CDS
TGGAGTCCTCAGAAACGTTC+CGG 0.397254 2_1:-75593149 Msa0225460:CDS
TTCCCTGCTGCACGTCCAAT+TGG 0.397411 2_1:+75589690 None:intergenic
ATTACCCTCTGGGCTTATCT+TGG 0.397833 2_1:-75593593 Msa0225460:CDS
TTGTTCTTAATTTCCACAAT+TGG 0.400041 2_1:+75593269 None:intergenic
CAGGGACTTGGAGAGACATT+TGG 0.403494 2_1:-75590443 Msa0225460:CDS
GAGGCAACCTGTGTTGTGGC+TGG 0.406876 2_1:+75591104 None:intergenic
TGTTGAGGAAAGGAATATAA+TGG 0.407641 2_1:-75593840 Msa0225460:CDS
ATCTTATGGGAGCAGGTTCT+CGG 0.410753 2_1:-75589771 Msa0225460:intron
ACTATAGAAGCAATGGCATT+TGG 0.411383 2_1:-75590413 Msa0225460:CDS
CATCCAATTGGACGTGCAGC+AGG 0.414855 2_1:-75589693 Msa0225460:CDS
CCAGTTGGCAAGGAAGCAAA+TGG 0.419877 2_1:-75589628 Msa0225460:CDS
ATAGTTGAGAACAATGTTAC+AGG 0.420330 2_1:-75589723 Msa0225460:CDS
ACAGGTCTTCTTCATCCAAT+TGG 0.421060 2_1:-75589705 Msa0225460:CDS
GAGTAATCCATACGTACTAT+TGG 0.421436 2_1:+75593211 None:intergenic
TTGTTACCATTGTTGAAAGA+TGG 0.422929 2_1:-75591422 Msa0225460:CDS
AGAGCTAGCTAGTCACAAAT+TGG 0.429410 2_1:+75589419 None:intergenic
AAGGCTGATCTTGTAATTGC+TGG 0.429776 2_1:-75592879 Msa0225460:CDS
AATTTGTTGAGGTTATTGTT+AGG 0.429920 2_1:-75589548 Msa0225460:CDS
CATTTGGCTCAACAGAAGAT+AGG 0.430286 2_1:-75593181 Msa0225460:CDS
CTATCTTCTGTTGAGCCAAA+TGG 0.432141 2_1:+75593182 None:intergenic
AGGTTCTCGGAACGGATTCT+GGG 0.432623 2_1:-75589758 Msa0225460:CDS
CCTGCTTAAAGAATTGTTTG+AGG 0.438712 2_1:+75591379 None:intergenic
CAATCTCTCAAAGTTCTCAT+TGG 0.442203 2_1:-75591224 Msa0225460:CDS
CCATGACCCACCAAGCAACT+TGG 0.444595 2_1:+75591912 None:intergenic
AAAGTTCTTCCTTCTTTCCT+CGG 0.444755 2_1:+75593668 None:intergenic
AGGAAGCAAATGGGGATAGA+AGG 0.445303 2_1:-75589618 Msa0225460:CDS
AAATGTAGCCTTGGCAAAGA+AGG 0.452522 2_1:-75593384 Msa0225460:CDS
GGAGTCCTCAGAAACGTTCC+GGG 0.453244 2_1:-75593148 Msa0225460:CDS
CCTCAAACAATTCTTTAAGC+AGG 0.454282 2_1:-75591379 Msa0225460:intron
TTCCACGAGCTTTCCATGAC+CGG 0.456509 2_1:-75593065 Msa0225460:CDS
TTTCAGCTGTTGCACTTAGC+AGG 0.456577 2_1:-75592986 Msa0225460:CDS
GCTGCTTCTAATTACCCTCT+GGG 0.460105 2_1:-75593603 Msa0225460:CDS
AGTCGAACGCCGAGGAAAGA+AGG 0.460307 2_1:-75593677 Msa0225460:CDS
ATCAAATCACGGCGAAGACT+CGG 0.460731 2_1:+75593476 None:intergenic
AAGCTTCAAAACTGCAATGA+AGG 0.464293 2_1:-75592898 Msa0225460:CDS
GGCAACCTGTGTTGTGGCTG+GGG 0.469028 2_1:+75591106 None:intergenic
CAAGCCCAAAGAAGAAGAGC+AGG 0.470250 2_1:-75593328 Msa0225460:CDS
CAAAATGGTGAACAGGGACT+TGG 0.473978 2_1:-75590455 Msa0225460:intron
AGGAATGTGTATTTCTAAAA+GGG 0.476882 2_1:-75593894 Msa0225460:five_prime_UTR
GTTAGAAATAAAGGAGGGAT+TGG 0.478873 2_1:-75593416 Msa0225460:CDS
AACGTTCCGGGACATGTAAT+AGG 0.479019 2_1:-75593136 Msa0225460:CDS
AAGGCAGTTGTTGCGAGAAT+CGG 0.482088 2_1:-75591651 Msa0225460:CDS
AGGCAACCTGTGTTGTGGCT+GGG 0.485271 2_1:+75591105 None:intergenic
CGGGTGCGAGCCAAGTTGCT+TGG 0.485763 2_1:-75591922 Msa0225460:CDS
CCAAGTTGCTTGGTGGGTCA+TGG 0.487031 2_1:-75591912 Msa0225460:CDS
CCCCTTCCTATTACATGTCC+CGG 0.487747 2_1:+75593130 None:intergenic
CTGATAAAATGATTGAGAAA+AGG 0.490392 2_1:-75591670 Msa0225460:CDS
GAACAATGATATAGAAGAGC+AGG 0.492309 2_1:-75593252 Msa0225460:CDS
TGCGAGCCAAGTTGCTTGGT+GGG 0.493421 2_1:-75591918 Msa0225460:CDS
AGTAGCATCAACCCCGGAAA+GGG 0.494447 2_1:-75591578 Msa0225460:CDS
AATCTAAACAATGGCAAAAG+TGG 0.495011 2_1:-75591811 Msa0225460:CDS
GTGCGAGCCAAGTTGCTTGG+TGG 0.495804 2_1:-75591919 Msa0225460:CDS
ATCACTTTCCTTCTTTGCCA+AGG 0.496573 2_1:+75593376 None:intergenic
TACGCCGGTATTTCTTGGCC+CGG 0.496951 2_1:+75593508 None:intergenic
GAATCGGTCCGAAAAGAAAT+GGG 0.498856 2_1:-75591635 Msa0225460:CDS
TGTTTATGCCATAAACTCTC+AGG 0.500207 2_1:-75591063 Msa0225460:intron
TCACAGAAGGAAGCAATTGT+TGG 0.502273 2_1:-75591270 Msa0225460:intron
TAGAACAATAAATGTAGCCT+TGG 0.503789 2_1:-75593393 Msa0225460:CDS
GAGTACTTCGACCGTTCAAA+GGG 0.504167 2_1:-75591878 Msa0225460:CDS
CCATACGTACTATTGGTTTG+AGG 0.507465 2_1:+75593218 None:intergenic
ATGGAGGAAAGCAGCAATAG+AGG 0.508277 2_1:-75593821 Msa0225460:CDS
CGGAGCTCCACTCTCAATGT+TGG 0.508341 2_1:-75593045 Msa0225460:CDS
CAGTTGGCAAGGAAGCAAAT+GGG 0.510086 2_1:-75589627 Msa0225460:CDS
AAACTATCTTCATTAAGATC+AGG 0.515217 2_1:-75593776 Msa0225460:CDS
CTTATCAATATGTGCCCACC+TGG 0.518074 2_1:+75593556 None:intergenic
TGAGAGTGGAGCTCCGGTCA+TGG 0.520701 2_1:+75593052 None:intergenic
GGAACCGGGCCAAGAAATAC+CGG 0.521618 2_1:-75593512 Msa0225460:CDS
GTGGGCACATATTGATAAGA+AGG 0.524950 2_1:-75593552 Msa0225460:CDS
AGAGTACTTCGACCGTTCAA+AGG 0.525221 2_1:-75591879 Msa0225460:CDS
GCTTTCTAGAAGACGAATCA+AGG 0.531246 2_1:-75592943 Msa0225460:CDS
GATGAACTGGCATTTGTAGC+CGG 0.532193 2_1:-75591728 Msa0225460:CDS
CCTCAAACCAATAGTACGTA+TGG 0.533615 2_1:-75593218 Msa0225460:CDS
AGATGGCAAAGTAGCTCTGA+AGG 0.536743 2_1:-75591405 Msa0225460:CDS
CTGATTCAAGAAGCAATAGC+TGG 0.538268 2_1:+75591555 None:intergenic
AACGAAGGAGAATTATTTCG+CGG 0.538604 2_1:+75593716 None:intergenic
AACGGTCGAAGTACTCTCTA+CGG 0.540457 2_1:+75591885 None:intergenic
AGCTGTTGCACTTAGCAGGA+AGG 0.547033 2_1:-75592982 Msa0225460:CDS
CAACATTGAGAGTGGAGCTC+CGG 0.548238 2_1:+75593046 None:intergenic
AGCAAATGGGGATAGAAGGC+AGG 0.552878 2_1:-75589614 Msa0225460:CDS
GTTCAGCTGTATGTGCATCA+TGG 0.555139 2_1:-75592857 Msa0225460:CDS
GCCAATTCCAACATTGAGAG+TGG 0.556981 2_1:+75593038 None:intergenic
GGAGCAATCGTGTGTTGTTG+TGG 0.563046 2_1:-75593625 Msa0225460:CDS
GCTGTTGCACTTAGCAGGAA+GGG 0.563411 2_1:-75592981 Msa0225460:CDS
TCCGGGACATGTAATAGGAA+GGG 0.564524 2_1:-75593131 Msa0225460:CDS
CTTGCACAGAGTAAAGATGT+TGG 0.568045 2_1:-75591852 Msa0225460:CDS
GAATCATGATTGTTGAGGAA+AGG 0.568364 2_1:-75593850 Msa0225460:exon
CCGGGACATGTAATAGGAAG+GGG 0.570061 2_1:-75593130 Msa0225460:CDS
TTCCGGGACATGTAATAGGA+AGG 0.571893 2_1:-75593132 Msa0225460:CDS
TAAATCTTCTCGACCAAACA+AGG 0.573246 2_1:+75593096 None:intergenic
GCAACTTGGCTCGCACCCGC+CGG 0.574124 2_1:+75591926 None:intergenic
AAGTAGCATCAACCCCGGAA+AGG 0.577074 2_1:-75591579 Msa0225460:CDS
GGTTCTCGGAACGGATTCTG+GGG 0.577256 2_1:-75589757 Msa0225460:CDS
AATACAGAAGATTCCGTGCA+AGG 0.580479 2_1:+75589661 None:intergenic
ACTTGGAGAGACATTTGGAC+GGG 0.580802 2_1:-75590438 Msa0225460:CDS
GTTAAGTGTAGAAGGAATGC+CGG 0.582910 2_1:+75591709 None:intergenic
GGGCTTGCTTTACGACGAGA+AGG 0.583830 2_1:+75593344 None:intergenic
CTATCTTCATTAAGATCAGG+TGG 0.585023 2_1:-75593773 Msa0225460:CDS
CATGTCCCGGAACGTTTCTG+AGG 0.586620 2_1:+75593143 None:intergenic
CTCCGGTCATGGAAAGCTCG+TGG 0.587117 2_1:+75593063 None:intergenic
ATGGGAGCAGGTTCTCGGAA+CGG 0.587903 2_1:-75589766 Msa0225460:intron
TAAAGGAAGGCTTGTCTACA+CGG 0.590742 2_1:-75591469 Msa0225460:CDS
CTTGTCTGTTAATAATGAGA+CGG 0.594500 2_1:-75593438 Msa0225460:CDS
GAGACGGTTAGAAATAAAGG+AGG 0.595028 2_1:-75593422 Msa0225460:CDS
GCTGTATGTGCATCATGGAT+TGG 0.595255 2_1:-75592852 Msa0225460:intron
ACTTTGCCATCTTTCAACAA+TGG 0.596363 2_1:+75591416 None:intergenic
TGGTAAGAAGAAACCAATTG+TGG 0.596946 2_1:-75593282 Msa0225460:CDS
AAGAGCAGGAGATCTTCGAA+AGG 0.599991 2_1:-75593314 Msa0225460:CDS
CCTCTGATAAAAGAAAATAG+AGG 0.600162 2_1:+75589396 None:intergenic
ATCTGCTGCAGAGTATAATG+AGG 0.601212 2_1:+75591085 None:intergenic
AAGTGCAACAGCTGAAACAG+TGG 0.603037 2_1:+75592992 None:intergenic
CTGAATCACAATCTAAACAA+TGG 0.603498 2_1:-75591820 Msa0225460:CDS
AAGACGAATCAAGGTGCTTG+AGG 0.605518 2_1:-75592934 Msa0225460:CDS
AAATTATCAAATATAAAGGA+AGG 0.606570 2_1:-75591482 Msa0225460:CDS
GCAATAGCTGGCCCTTTCCG+GGG 0.611467 2_1:+75591567 None:intergenic
CATGTATAAGAAATTTGTTG+AGG 0.611722 2_1:-75589559 Msa0225460:CDS
GTTGCACTTAGCAGGAAGGG+TGG 0.613077 2_1:-75592978 Msa0225460:CDS
GAGTTTAGTCTTCGAAACGA+AGG 0.614670 2_1:+75593701 None:intergenic
GACTTGGAGAGACATTTGGA+CGG 0.618285 2_1:-75590439 Msa0225460:CDS
AGTTCATCATTAACAGACAA+AGG 0.620196 2_1:+75591743 None:intergenic
ACGGGTGACTATAGAAGCAA+TGG 0.624266 2_1:-75590420 Msa0225460:CDS
AATACCAAGATAAGCCCAGA+GGG 0.624408 2_1:+75593589 None:intergenic
TGTGCAAGACACCCTTTGAA+CGG 0.624594 2_1:+75591867 None:intergenic
ATACATAATGTAGTGACTGC+TGG 0.625005 2_1:-75589453 Msa0225460:three_prime_UTR
AGTTGGCAAGGAAGCAAATG+GGG 0.626977 2_1:-75589626 Msa0225460:CDS
CGTCTCATTATTAACAGACA+AGG 0.627188 2_1:+75593439 None:intergenic
AAAGAAGGAAAGTGATGATG+AGG 0.629203 2_1:-75593369 Msa0225460:CDS
CAGGGAACGATGTCCTTGCA+CGG 0.630071 2_1:-75589674 Msa0225460:CDS
ATCCAATTGGACGTGCAGCA+GGG 0.637876 2_1:-75589692 Msa0225460:CDS
TGAGGAAAGGAATATAATGG+AGG 0.639776 2_1:-75593837 Msa0225460:CDS
GTGGACCCCAGCCACAACAC+AGG 0.642970 2_1:-75591111 Msa0225460:CDS
AGACGGTTAGAAATAAAGGA+GGG 0.643625 2_1:-75593421 Msa0225460:CDS
CATCACTAGCAATCAAATCA+CGG 0.645910 2_1:+75593465 None:intergenic
ACAAAGGAACAGTTGCAGGT+TGG 0.651753 2_1:+75591759 None:intergenic
TGTTGGATCCAAAAGTAACA+AGG 0.656667 2_1:-75591198 Msa0225460:CDS
GCTGTTCTAAGAAACTGAGA+AGG 0.659200 2_1:+75591159 None:intergenic
TAATGAGGCAACCTGTGTTG+TGG 0.663004 2_1:+75591100 None:intergenic
GGCACATATTGATAAGAAGG+AGG 0.663174 2_1:-75593549 Msa0225460:CDS
TCTTCGAAAGGTAAAGCTCG+TGG 0.669801 2_1:-75593302 Msa0225460:CDS
TCTCTAAGTAGCATCAACCC+CGG 0.669974 2_1:-75591584 Msa0225460:CDS
GTTCTCGGAACGGATTCTGG+GGG 0.681613 2_1:-75589756 Msa0225460:CDS
AGTACGTATGGATTACTCGT+CGG 0.683292 2_1:-75593206 Msa0225460:CDS
ACTCGGATCAGCATCTACGC+CGG 0.684071 2_1:+75593493 None:intergenic
TGGATCCAAAAGTAACAAGG+TGG 0.684946 2_1:-75591195 Msa0225460:CDS
TAAACTCTAGTCGAACGCCG+AGG 0.690673 2_1:-75593685 Msa0225460:CDS
CGGGACATGTAATAGGAAGG+GGG 0.712818 2_1:-75593129 Msa0225460:CDS
TATATGAATCATGATTGTTG+AGG 0.718092 2_1:-75593855 Msa0225460:exon
AAATACCAAGATAAGCCCAG+AGG 0.740468 2_1:+75593588 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAATTTAATATGCTT+AGG - chr2_1:75591022-75591041 Msa0225460:intron 10.0%
!! GAAAAAATTATCAAATATAA+AGG - chr2_1:75592101-75592120 Msa0225460:intron 10.0%
!!! TTATTTTACTTTTTCTAATT+TGG - chr2_1:75592802-75592821 Msa0225460:intron 10.0%
!!! TTTGTTTTTTAATTACTTGA+AGG - chr2_1:75589580-75589599 Msa0225460:CDS 15.0%
!!! TTGTTTTTTAATTACTTGAA+GGG - chr2_1:75589581-75589600 Msa0225460:CDS 15.0%
!!! TATTTTAATATTTCCTTTTG+TGG + chr2_1:75591009-75591028 None:intergenic 15.0%
!! ATTTACAAGAGAAATATAAT+CGG + chr2_1:75591495-75591514 None:intergenic 15.0%
!! AAATTATCAAATATAAAGGA+AGG - chr2_1:75592105-75592124 Msa0225460:intron 15.0%
!! GAAGTAAATTATATAACTTA+TGG - chr2_1:75592244-75592263 Msa0225460:intron 15.0%
!! TATTACATATATCAATATGA+AGG + chr2_1:75592600-75592619 None:intergenic 15.0%
!!! ATGTAATAATGCTTTTATAT+AGG - chr2_1:75592612-75592631 Msa0225460:intron 15.0%
!! AACAAAATCTATATATTTAG+AGG + chr2_1:75593621-75593640 None:intergenic 15.0%
!! AATATATTGCTTGATCAAAA+AGG + chr2_1:75589447-75589466 None:intergenic 20.0%
!!! ACTATTTTTTGGTGAATTTA+AGG - chr2_1:75589668-75589687 Msa0225460:CDS 20.0%
!!! AGTTTTAAATCAACATTATC+AGG - chr2_1:75589838-75589857 Msa0225460:intron 20.0%
!! TTGTTACATTTCATTATACA+TGG - chr2_1:75590769-75590788 Msa0225460:intron 20.0%
!! TTCAATGTTGCATATTAATT+TGG + chr2_1:75590921-75590940 None:intergenic 20.0%
!! TAATGGTTTGAATGATTAAA+AGG + chr2_1:75591246-75591265 None:intergenic 20.0%
!! TAATTCTTTCCTTTATTGTT+TGG - chr2_1:75591412-75591431 Msa0225460:CDS 20.0%
!!! AATCATTTTATCAGTACTAA+AGG + chr2_1:75591911-75591930 None:intergenic 20.0%
!!! TCATTTAAAATATCTTTGCT+TGG + chr2_1:75592711-75592730 None:intergenic 20.0%
!! TGGGTAATTTATGAATTTAT+TGG - chr2_1:75592935-75592954 Msa0225460:CDS 20.0%
!!! TTTATTGGAATAGTATTGAA+TGG - chr2_1:75592950-75592969 Msa0225460:CDS 20.0%
!! AAAAAAGAATGATTATTGCA+GGG + chr2_1:75594084-75594103 None:intergenic 20.0%
!! AAAAAAAGAATGATTATTGC+AGG + chr2_1:75594085-75594104 None:intergenic 20.0%
! TATGCTAAAATCTCAAACTT+AGG + chr2_1:75589348-75589367 None:intergenic 25.0%
! TTTAGCAAATTAATCCATGT+GGG + chr2_1:75589559-75589578 None:intergenic 25.0%
!!! TTTTTGGTGAATTTAAGGAA+AGG - chr2_1:75589673-75589692 Msa0225460:CDS 25.0%
!! AAGGAATGTGTATTTCTAAA+AGG - chr2_1:75589692-75589711 Msa0225460:CDS 25.0%
!! AGGAATGTGTATTTCTAAAA+GGG - chr2_1:75589693-75589712 Msa0225460:CDS 25.0%
! TATATGAATCATGATTGTTG+AGG - chr2_1:75589732-75589751 Msa0225460:CDS 25.0%
! AAACTATCTTCATTAAGATC+AGG - chr2_1:75589811-75589830 Msa0225460:intron 25.0%
! TTGTTCTTAATTTCCACAAT+TGG + chr2_1:75590321-75590340 None:intergenic 25.0%
! GTTTGAATGATTAAAAGGTT+AGG + chr2_1:75591241-75591260 None:intergenic 25.0%
! TTAAACTCATTCGTTTCTAA+TGG + chr2_1:75591263-75591282 None:intergenic 25.0%
! TAGAACTAGAAAATGGTATA+AGG + chr2_1:75591324-75591343 None:intergenic 25.0%
! TAAAGGTTAGAACTAGAAAA+TGG + chr2_1:75591331-75591350 None:intergenic 25.0%
! TCTAACCTTTATATATATCG+TGG - chr2_1:75591340-75591359 Msa0225460:intron 25.0%
! ATCTACCACGATATATATAA+AGG + chr2_1:75591348-75591367 None:intergenic 25.0%
! TTTATTAAGACATGTAGAAG+AGG + chr2_1:75591594-75591613 None:intergenic 25.0%
! AAACGTTCAATATATTGTTC+TGG + chr2_1:75591640-75591659 None:intergenic 25.0%
!! ACAATATATTGAACGTTTTC+CGG - chr2_1:75591642-75591661 Msa0225460:CDS 25.0%
!! ATTTTATCAGTACTAAAGGA+CGG + chr2_1:75591907-75591926 None:intergenic 25.0%
! CTGATAAAATGATTGAGAAA+AGG - chr2_1:75591917-75591936 Msa0225460:CDS 25.0%
!!! AAAACTGATTTTGAAGTGTT+TGG + chr2_1:75592456-75592475 None:intergenic 25.0%
!! GTATTCTAAAAAAAGAACCA+AGG + chr2_1:75592865-75592884 None:intergenic 25.0%
! TCAGTATTCTTTATCAGTAA+AGG - chr2_1:75592901-75592920 Msa0225460:CDS 25.0%
! AGTAAAGGATAAGATTTACT+GGG - chr2_1:75592916-75592935 Msa0225460:CDS 25.0%
!!! ATAGTATTGAATGGAAGTTT+TGG - chr2_1:75592959-75592978 Msa0225460:CDS 25.0%
!!! ATAGTAATAGCTCTAAATGT+AGG + chr2_1:75593068-75593087 None:intergenic 25.0%
! ACAATAATCAAAAGGATCAA+AGG + chr2_1:75593521-75593540 None:intergenic 25.0%
! CTTCAGTAACAATAATCAAA+AGG + chr2_1:75593529-75593548 None:intergenic 25.0%
!!! TTGTTCTAAAACTAGGAAAA+AGG - chr2_1:75593661-75593680 Msa0225460:CDS 25.0%
! TTGTGTTCCAATTAATCTTA+TGG - chr2_1:75593802-75593821 Msa0225460:CDS 25.0%
! TGTGTTCCAATTAATCTTAT+GGG - chr2_1:75593803-75593822 Msa0225460:CDS 25.0%
!!! CATGTATAAGAAATTTGTTG+AGG - chr2_1:75594028-75594047 Msa0225460:intron 25.0%
!!! AATTTGTTGAGGTTATTGTT+AGG - chr2_1:75594039-75594058 Msa0225460:intron 25.0%
! TTGCATGATCTTTTACTACT+TGG - chr2_1:75589401-75589420 Msa0225460:three_prime_UTR 30.0%
CTTTAGCAAATTAATCCATG+TGG + chr2_1:75589560-75589579 None:intergenic 30.0%
!!! AGCATTGTAGGACTATTTTT+TGG - chr2_1:75589657-75589676 Msa0225460:CDS 30.0%
TGTTGAGGAAAGGAATATAA+TGG - chr2_1:75589747-75589766 Msa0225460:CDS 30.0%
!!! TTGGTATTTTTTTTCAGTCC+AGG - chr2_1:75590013-75590032 Msa0225460:intron 30.0%
!!! TATTTTTTTTCAGTCCAGGT+GGG - chr2_1:75590017-75590036 Msa0225460:intron 30.0%
CTTGTCTGTTAATAATGAGA+CGG - chr2_1:75590149-75590168 Msa0225460:intron 30.0%
AATGAGACGGTTAGAAATAA+AGG - chr2_1:75590162-75590181 Msa0225460:intron 30.0%
TAGAACAATAAATGTAGCCT+TGG - chr2_1:75590194-75590213 Msa0225460:intron 30.0%
TAAGATACAAAAGTAGAGGA+AGG + chr2_1:75590866-75590885 None:intergenic 30.0%
! AGTCTAAGATACAAAAGTAG+AGG + chr2_1:75590870-75590889 None:intergenic 30.0%
!!! TAAATGCTTTTTCAACCTCA+CGG - chr2_1:75590893-75590912 Msa0225460:intron 30.0%
AACTAACAAGCATATCTTTC+TGG + chr2_1:75590963-75590982 None:intergenic 30.0%
! ATAGAGCTAGTATGATAATG+TGG + chr2_1:75591097-75591116 None:intergenic 30.0%
!! CATACTAGCTCTATAACTAT+TGG - chr2_1:75591103-75591122 Msa0225460:CDS 30.0%
!! AGCTCTATAACTATTGGTTT+AGG - chr2_1:75591109-75591128 Msa0225460:CDS 30.0%
GACACAATACCAAACAATAA+AGG + chr2_1:75591424-75591443 None:intergenic 30.0%
! TGATTTTGCTTCTAATACAG+AGG - chr2_1:75591465-75591484 Msa0225460:CDS 30.0%
CTGAATCACAATCTAAACAA+TGG - chr2_1:75591767-75591786 Msa0225460:CDS 30.0%
AATCTAAACAATGGCAAAAG+TGG - chr2_1:75591776-75591795 Msa0225460:CDS 30.0%
AGTTCATCATTAACAGACAA+AGG + chr2_1:75591847-75591866 None:intergenic 30.0%
TTTGTCTGTTAATGATGAAC+TGG - chr2_1:75591846-75591865 Msa0225460:CDS 30.0%
! CAGTTAATCCCATTTCTTTT+CGG + chr2_1:75591963-75591982 None:intergenic 30.0%
TTGTTACCATTGTTGAAAGA+TGG - chr2_1:75592165-75592184 Msa0225460:intron 30.0%
TTAAGCAGGTTACATTAAAC+TGG - chr2_1:75592222-75592241 Msa0225460:intron 30.0%
!!! ATAATCCACCTTGTTACTTT+TGG + chr2_1:75592400-75592419 None:intergenic 30.0%
! ACACTTCAAAATCAGTTTTG+TGG - chr2_1:75592457-75592476 Msa0225460:intron 30.0%
GGATGCATATACTCATAATT+AGG + chr2_1:75592651-75592670 None:intergenic 30.0%
! AAGACTTGAAGTTTTTACCT+TGG - chr2_1:75592845-75592864 Msa0225460:intron 30.0%
TACTGAATATACAGACAAGA+AGG + chr2_1:75592887-75592906 None:intergenic 30.0%
CAGTAAAGGATAAGATTTAC+TGG - chr2_1:75592915-75592934 Msa0225460:CDS 30.0%
TACGAAAATATCCTCCAAAA+TGG - chr2_1:75593091-75593110 Msa0225460:CDS 30.0%
ACGAAAATATCCTCCAAAAT+GGG - chr2_1:75593092-75593111 Msa0225460:CDS 30.0%
ACTGTTGCTAACTAACAAAA+TGG - chr2_1:75593117-75593136 Msa0225460:CDS 30.0%
TAACTAACAAAATGGTGAAC+AGG - chr2_1:75593125-75593144 Msa0225460:CDS 30.0%
AACTAACAAAATGGTGAACA+GGG - chr2_1:75593126-75593145 Msa0225460:CDS 30.0%
ATTTGCATGAGATAAACAAG+AGG + chr2_1:75593228-75593247 None:intergenic 30.0%
!! TTTTATTTGAGTGTCACACT+TGG - chr2_1:75593253-75593272 Msa0225460:CDS 30.0%
TTTATTTGAGTGTCACACTT+GGG - chr2_1:75593254-75593273 Msa0225460:CDS 30.0%
! ACTGTTTTCGTAAGCTATAT+TGG - chr2_1:75593372-75593391 Msa0225460:CDS 30.0%
! TTGTGGTAGTAAGTTGAAAA+CGG - chr2_1:75593400-75593419 Msa0225460:CDS 30.0%
!! TTGTCAGTTGTTCTAAAACT+AGG - chr2_1:75593654-75593673 Msa0225460:CDS 30.0%
TAATTTAGTGCCATAAACCT+AGG + chr2_1:75593689-75593708 None:intergenic 30.0%
ATAGTTGAGAACAATGTTAC+AGG - chr2_1:75593864-75593883 Msa0225460:exon 30.0%
GTATTTGCTTAAAAACCAGT+TGG - chr2_1:75593944-75593963 Msa0225460:five_prime_UTR 30.0%
CCTCTGATAAAAGAAAATAG+AGG + chr2_1:75594194-75594213 None:intergenic 30.0%
! CCTCTATTTTCTTTTATCAG+AGG - chr2_1:75594191-75594210 Msa0225460:intron 30.0%
GGGAAAAACTATTGATACTT+TGG + chr2_1:75594298-75594317 None:intergenic 30.0%
TGTTATAAAGATAGCCCACA+TGG - chr2_1:75589542-75589561 Msa0225460:CDS 35.0%
!! GTTCAAGATTGAAGCATTGT+AGG - chr2_1:75589645-75589664 Msa0225460:CDS 35.0%
GAATCATGATTGTTGAGGAA+AGG - chr2_1:75589737-75589756 Msa0225460:CDS 35.0%
TGAGGAAAGGAATATAATGG+AGG - chr2_1:75589750-75589769 Msa0225460:CDS 35.0%
CTATCTTCATTAAGATCAGG+TGG - chr2_1:75589814-75589833 Msa0225460:intron 35.0%
AACGAAGGAGAATTATTTCG+CGG + chr2_1:75589874-75589893 None:intergenic 35.0%
AAAGTTCTTCCTTCTTTCCT+CGG + chr2_1:75589922-75589941 None:intergenic 35.0%
! AGGAAAGAAGGAAGAACTTT+TGG - chr2_1:75589922-75589941 Msa0225460:intron 35.0%
! AAAGAAGGAAGAACTTTTGG+TGG - chr2_1:75589925-75589944 Msa0225460:intron 35.0%
!! TTGGTGGTTTTCTGTTGTTT+CGG - chr2_1:75589941-75589960 Msa0225460:intron 35.0%
!!! GTATTTTTTTTCAGTCCAGG+TGG - chr2_1:75590016-75590035 Msa0225460:intron 35.0%
! GATAAGAAGGAGGAATTTTC+TGG - chr2_1:75590048-75590067 Msa0225460:intron 35.0%
CATCACTAGCAATCAAATCA+CGG + chr2_1:75590125-75590144 None:intergenic 35.0%
CGTCTCATTATTAACAGACA+AGG + chr2_1:75590151-75590170 None:intergenic 35.0%
AGACGGTTAGAAATAAAGGA+GGG - chr2_1:75590166-75590185 Msa0225460:intron 35.0%
GTTAGAAATAAAGGAGGGAT+TGG - chr2_1:75590171-75590190 Msa0225460:intron 35.0%
! AAAGAAGGAAAGTGATGATG+AGG - chr2_1:75590218-75590237 Msa0225460:intron 35.0%
TGGTAAGAAGAAACCAATTG+TGG - chr2_1:75590305-75590324 Msa0225460:intron 35.0%
GAACAATGATATAGAAGAGC+AGG - chr2_1:75590335-75590354 Msa0225460:intron 35.0%
!! CTATTGGTTTGAGGAATTTC+TGG + chr2_1:75590363-75590382 None:intergenic 35.0%
GAGTAATCCATACGTACTAT+TGG + chr2_1:75590379-75590398 None:intergenic 35.0%
! CTCAACAGAAGATAGGATTT+TGG - chr2_1:75590413-75590432 Msa0225460:CDS 35.0%
!! CAGAAGATAGGATTTTGGAA+TGG - chr2_1:75590418-75590437 Msa0225460:CDS 35.0%
TAAATCTTCTCGACCAAACA+AGG + chr2_1:75590494-75590513 None:intergenic 35.0%
AAGCTTCAAAACTGCAATGA+AGG - chr2_1:75590689-75590708 Msa0225460:intron 35.0%
AAAGTAGAGGAAGGAAAAGA+TGG + chr2_1:75590857-75590876 None:intergenic 35.0%
GATATTGTAGCTACCACAAA+AGG - chr2_1:75590993-75591012 Msa0225460:intron 35.0%
! TTTTGCAATGTTGCAATGTC+CGG + chr2_1:75591065-75591084 None:intergenic 35.0%
!!! GACACTTGAGTTTTGAAGTA+TGG + chr2_1:75591155-75591174 None:intergenic 35.0%
AACTCAAGTGTCTCAGTAAA+TGG - chr2_1:75591163-75591182 Msa0225460:CDS 35.0%
ATTGTTTGGTATTGTGTCCA+TGG - chr2_1:75591426-75591445 Msa0225460:CDS 35.0%
AGTAACAGCTAAACAATCCA+TGG + chr2_1:75591446-75591465 None:intergenic 35.0%
CTGGAGACATAAGAAAACAA+AGG + chr2_1:75591621-75591640 None:intergenic 35.0%
! ATATATTGAACGTTTTCCGG+CGG - chr2_1:75591645-75591664 Msa0225460:CDS 35.0%
ACTTTGCCATCTTTCAACAA+TGG + chr2_1:75592174-75592193 None:intergenic 35.0%
CCTGCTTAAAGAATTGTTTG+AGG + chr2_1:75592211-75592230 None:intergenic 35.0%
CCTCAAACAATTCTTTAAGC+AGG - chr2_1:75592208-75592227 Msa0225460:intron 35.0%
TGAACTTTGACAATCACAGA+AGG - chr2_1:75592304-75592323 Msa0225460:intron 35.0%
CAATCTCTCAAAGTTCTCAT+TGG - chr2_1:75592363-75592382 Msa0225460:intron 35.0%
!! AAAGTTCTCATTGGTTCTGT+TGG - chr2_1:75592372-75592391 Msa0225460:intron 35.0%
TGTTGGATCCAAAAGTAACA+AGG - chr2_1:75592389-75592408 Msa0225460:intron 35.0%
TGTTTATGCCATAAACTCTC+AGG - chr2_1:75592524-75592543 Msa0225460:intron 35.0%
ACGAAACTGTTCAATCATGT+TGG - chr2_1:75592730-75592749 Msa0225460:intron 35.0%
! TTAGCAACAGTTTCCCATTT+TGG + chr2_1:75593108-75593127 None:intergenic 35.0%
ACTATAGAAGCAATGGCATT+TGG - chr2_1:75593174-75593193 Msa0225460:CDS 35.0%
AAGCTATATTGGAAAGCTTG+TGG - chr2_1:75593383-75593402 Msa0225460:CDS 35.0%
CTACTAACATTCGAACTTGA+GGG + chr2_1:75593469-75593488 None:intergenic 35.0%
TCTACTAACATTCGAACTTG+AGG + chr2_1:75593470-75593489 None:intergenic 35.0%
TCAAATGATCCAATCCAAAC+AGG - chr2_1:75593495-75593514 Msa0225460:CDS 35.0%
! TGTGCCTTTCTTTCAGTTTT+AGG + chr2_1:75593578-75593597 None:intergenic 35.0%
TATTTAGAGGCAACCACTAT+CGG + chr2_1:75593608-75593627 None:intergenic 35.0%
ATACATAATGTAGTGACTGC+TGG - chr2_1:75594134-75594153 Msa0225460:intron 35.0%
CAGCAATAGAGGTGAATTTC+AGG - chr2_1:75589777-75589796 Msa0225460:intron 40.0%
! GAGTTTAGTCTTCGAAACGA+AGG + chr2_1:75589889-75589908 None:intergenic 40.0%
AATACCAAGATAAGCCCAGA+GGG + chr2_1:75590001-75590020 None:intergenic 40.0%
AAATACCAAGATAAGCCCAG+AGG + chr2_1:75590002-75590021 None:intergenic 40.0%
GTGGGCACATATTGATAAGA+AGG - chr2_1:75590035-75590054 Msa0225460:intron 40.0%
GGCACATATTGATAAGAAGG+AGG - chr2_1:75590038-75590057 Msa0225460:intron 40.0%
!!! AAGGAGGAATTTTCTGGCTT+TGG - chr2_1:75590054-75590073 Msa0225460:intron 40.0%
!!! GAATTTTCTGGCTTTGGAAC+CGG - chr2_1:75590060-75590079 Msa0225460:intron 40.0%
!!! AATTTTCTGGCTTTGGAACC+GGG - chr2_1:75590061-75590080 Msa0225460:intron 40.0%
GAGACGGTTAGAAATAAAGG+AGG - chr2_1:75590165-75590184 Msa0225460:intron 40.0%
! AAATGTAGCCTTGGCAAAGA+AGG - chr2_1:75590203-75590222 Msa0225460:intron 40.0%
ATCACTTTCCTTCTTTGCCA+AGG + chr2_1:75590214-75590233 None:intergenic 40.0%
ATCTCCTGCTCTTCTTCTTT+GGG + chr2_1:75590266-75590285 None:intergenic 40.0%
!! CCATACGTACTATTGGTTTG+AGG + chr2_1:75590372-75590391 None:intergenic 40.0%
CCTCAAACCAATAGTACGTA+TGG - chr2_1:75590369-75590388 Msa0225460:intron 40.0%
! AGTACGTATGGATTACTCGT+CGG - chr2_1:75590381-75590400 Msa0225460:intron 40.0%
CTATCTTCTGTTGAGCCAAA+TGG + chr2_1:75590408-75590427 None:intergenic 40.0%
! CATTTGGCTCAACAGAAGAT+AGG - chr2_1:75590406-75590425 Msa0225460:CDS 40.0%
TCCACTCTCAATGTTGGAAT+TGG - chr2_1:75590548-75590567 Msa0225460:intron 40.0%
! GCTTTCTAGAAGACGAATCA+AGG - chr2_1:75590644-75590663 Msa0225460:intron 40.0%
AAGGCTGATCTTGTAATTGC+TGG - chr2_1:75590708-75590727 Msa0225460:intron 40.0%
! CATATTAATTTGGCACCGTG+AGG + chr2_1:75590911-75590930 None:intergenic 40.0%
GGACATTGCAACATTGCAAA+AGG - chr2_1:75591064-75591083 Msa0225460:CDS 40.0%
! TGAAGTATGGCATGCTTTTG+TGG + chr2_1:75591142-75591161 None:intergenic 40.0%
TCAGTAAATGGCACCAACTT+TGG - chr2_1:75591175-75591194 Msa0225460:CDS 40.0%
GTATGTTGAGGATCCAAAGT+TGG + chr2_1:75591191-75591210 None:intergenic 40.0%
GCAGGAATATAGGTATGTTG+AGG + chr2_1:75591203-75591222 None:intergenic 40.0%
GTGCATATGTGCAGGAATAT+AGG + chr2_1:75591213-75591232 None:intergenic 40.0%
! TATATTGAACGTTTTCCGGC+GGG - chr2_1:75591646-75591665 Msa0225460:CDS 40.0%
CTTGCACAGAGTAAAGATGT+TGG - chr2_1:75591735-75591754 Msa0225460:CDS 40.0%
GTTAAGTGTAGAAGGAATGC+CGG + chr2_1:75591881-75591900 None:intergenic 40.0%
AGAATCGGTCCGAAAAGAAA+TGG - chr2_1:75591951-75591970 Msa0225460:intron 40.0%
GAATCGGTCCGAAAAGAAAT+GGG - chr2_1:75591952-75591971 Msa0225460:intron 40.0%
CTGATTCAAGAAGCAATAGC+TGG + chr2_1:75592035-75592054 None:intergenic 40.0%
TAAAGGAAGGCTTGTCTACA+CGG - chr2_1:75592118-75592137 Msa0225460:intron 40.0%
TCACAGAAGGAAGCAATTGT+TGG - chr2_1:75592317-75592336 Msa0225460:intron 40.0%
TGGATCCAAAAGTAACAAGG+TGG - chr2_1:75592392-75592411 Msa0225460:intron 40.0%
!! GCTGTTCTAAGAAACTGAGA+AGG + chr2_1:75592431-75592450 None:intergenic 40.0%
ATCTGCTGCAGAGTATAATG+AGG + chr2_1:75592505-75592524 None:intergenic 40.0%
TATGCCATAAACTCTCAGGT+AGG - chr2_1:75592528-75592547 Msa0225460:intron 40.0%
GGGCAAAGTAGATTCATAAG+TGG + chr2_1:75592672-75592691 None:intergenic 40.0%
TTGGAGCTATGTGAATGTCA+GGG + chr2_1:75592692-75592711 None:intergenic 40.0%
CTCTAAATGTAGGTAACAGC+TGG + chr2_1:75593058-75593077 None:intergenic 40.0%
AAGCAAACTAGCAGTCATAC+CGG + chr2_1:75593204-75593223 None:intergenic 40.0%
AAAAGGATCAAAGGCCTGTT+TGG + chr2_1:75593512-75593531 None:intergenic 40.0%
!!! CCTTTCTTTCAGTTTTAGGC+TGG + chr2_1:75593574-75593593 None:intergenic 40.0%
CCAGCCTAAAACTGAAAGAA+AGG - chr2_1:75593571-75593590 Msa0225460:CDS 40.0%
AAACTAGGAAAAAGGCTCCT+AGG - chr2_1:75593669-75593688 Msa0225460:CDS 40.0%
GAAAAAGGCTCCTAGGTTTA+TGG - chr2_1:75593676-75593695 Msa0225460:CDS 40.0%
CCTGCTCCCATAAGATTAAT+TGG + chr2_1:75593812-75593831 None:intergenic 40.0%
CCAATTAATCTTATGGGAGC+AGG - chr2_1:75593809-75593828 Msa0225460:CDS 40.0%
ACAGGTCTTCTTCATCCAAT+TGG - chr2_1:75593882-75593901 Msa0225460:five_prime_UTR 40.0%
AATACAGAAGATTCCGTGCA+AGG + chr2_1:75593929-75593948 None:intergenic 40.0%
TGCTTAAAAACCAGTTGGCA+AGG - chr2_1:75593949-75593968 Msa0225460:five_prime_UTR 40.0%
AGAGCTAGCTAGTCACAAAT+TGG + chr2_1:75594171-75594190 None:intergenic 40.0%
ATGGAGGAAAGCAGCAATAG+AGG - chr2_1:75589766-75589785 Msa0225460:intron 45.0%
GCTGCTTCTAATTACCCTCT+GGG - chr2_1:75589984-75590003 Msa0225460:intron 45.0%
ATTACCCTCTGGGCTTATCT+TGG - chr2_1:75589994-75590013 Msa0225460:intron 45.0%
CTTATCAATATGTGCCCACC+TGG + chr2_1:75590034-75590053 None:intergenic 45.0%
ATCAAATCACGGCGAAGACT+CGG + chr2_1:75590114-75590133 None:intergenic 45.0%
GATCTCCTGCTCTTCTTCTT+TGG + chr2_1:75590267-75590286 None:intergenic 45.0%
AAGAGCAGGAGATCTTCGAA+AGG - chr2_1:75590273-75590292 Msa0225460:intron 45.0%
TCTTCGAAAGGTAAAGCTCG+TGG - chr2_1:75590285-75590304 Msa0225460:intron 45.0%
AACGTTCCGGGACATGTAAT+AGG - chr2_1:75590451-75590470 Msa0225460:intron 45.0%
TTCCGGGACATGTAATAGGA+AGG - chr2_1:75590455-75590474 Msa0225460:intron 45.0%
TCCGGGACATGTAATAGGAA+GGG - chr2_1:75590456-75590475 Msa0225460:intron 45.0%
GCCAATTCCAACATTGAGAG+TGG + chr2_1:75590552-75590571 None:intergenic 45.0%
AAGTGCAACAGCTGAAACAG+TGG + chr2_1:75590598-75590617 None:intergenic 45.0%
TTTCAGCTGTTGCACTTAGC+AGG - chr2_1:75590601-75590620 Msa0225460:intron 45.0%
! AAGACGAATCAAGGTGCTTG+AGG - chr2_1:75590653-75590672 Msa0225460:intron 45.0%
GTTCAGCTGTATGTGCATCA+TGG - chr2_1:75590730-75590749 Msa0225460:intron 45.0%
GCTGTATGTGCATCATGGAT+TGG - chr2_1:75590735-75590754 Msa0225460:intron 45.0%
CAATGTCCGGTCAAAAGACT+AGG + chr2_1:75591052-75591071 None:intergenic 45.0%
AGGAGTTTGTGCATATGTGC+AGG + chr2_1:75591221-75591240 None:intergenic 45.0%
! AACGGTCGAAGTACTCTCTA+CGG + chr2_1:75591705-75591724 None:intergenic 45.0%
! AGAGTACTTCGACCGTTCAA+AGG - chr2_1:75591708-75591727 Msa0225460:CDS 45.0%
GAGTACTTCGACCGTTCAAA+GGG - chr2_1:75591709-75591728 Msa0225460:CDS 45.0%
TGTGCAAGACACCCTTTGAA+CGG + chr2_1:75591723-75591742 None:intergenic 45.0%
ACAAAGGAACAGTTGCAGGT+TGG + chr2_1:75591831-75591850 None:intergenic 45.0%
ACAGACAAAGGAACAGTTGC+AGG + chr2_1:75591835-75591854 None:intergenic 45.0%
GATGAACTGGCATTTGTAGC+CGG - chr2_1:75591859-75591878 Msa0225460:CDS 45.0%
! GACGGAGTGTTAAGTGTAGA+AGG + chr2_1:75591889-75591908 None:intergenic 45.0%
AAGGCAGTTGTTGCGAGAAT+CGG - chr2_1:75591936-75591955 Msa0225460:CDS 45.0%
TCTCTAAGTAGCATCAACCC+CGG - chr2_1:75592003-75592022 Msa0225460:intron 45.0%
!! AGATGGCAAAGTAGCTCTGA+AGG - chr2_1:75592182-75592201 Msa0225460:intron 45.0%
TAATGAGGCAACCTGTGTTG+TGG + chr2_1:75592490-75592509 None:intergenic 45.0%
ACGACCTACCTGAGAGTTTA+TGG + chr2_1:75592535-75592554 None:intergenic 45.0%
CTTGGAGCTATGTGAATGTC+AGG + chr2_1:75592693-75592712 None:intergenic 45.0%
! GCAACAGTTTCCCATTTTGG+AGG + chr2_1:75593105-75593124 None:intergenic 45.0%
CAAAATGGTGAACAGGGACT+TGG - chr2_1:75593132-75593151 Msa0225460:CDS 45.0%
GACTTGGAGAGACATTTGGA+CGG - chr2_1:75593148-75593167 Msa0225460:CDS 45.0%
ACTTGGAGAGACATTTGGAC+GGG - chr2_1:75593149-75593168 Msa0225460:CDS 45.0%
ACGGGTGACTATAGAAGCAA+TGG - chr2_1:75593167-75593186 Msa0225460:CDS 45.0%
! AGCAATGGCATTTGGTCTTC+CGG - chr2_1:75593182-75593201 Msa0225460:CDS 45.0%
TTCGAACTTGAGGGACTGTT+TGG + chr2_1:75593460-75593479 None:intergenic 45.0%
GATCAAAGGCCTGTTTGGAT+TGG + chr2_1:75593507-75593526 None:intergenic 45.0%
ATCTTATGGGAGCAGGTTCT+CGG - chr2_1:75593816-75593835 Msa0225460:CDS 45.0%
CAGTTGGCAAGGAAGCAAAT+GGG - chr2_1:75593960-75593979 Msa0225460:five_prime_UTR 45.0%
AGTTGGCAAGGAAGCAAATG+GGG - chr2_1:75593961-75593980 Msa0225460:five_prime_UTR 45.0%
AGGAAGCAAATGGGGATAGA+AGG - chr2_1:75593969-75593988 Msa0225460:five_prime_UTR 45.0%
GATAGAAGGCAGGAAAAAGG+TGG - chr2_1:75593983-75594002 Msa0225460:five_prime_UTR 45.0%
!!! AAATATTTTTTAATTTTCAA+TGG + chr2_1:75592994-75593013 None:intergenic 5.0%
TAAACTCTAGTCGAACGCCG+AGG - chr2_1:75589902-75589921 Msa0225460:intron 50.0%
! GGAGCAATCGTGTGTTGTTG+TGG - chr2_1:75589962-75589981 Msa0225460:intron 50.0%
GGCTGCTTCTAATTACCCTC+TGG - chr2_1:75589983-75590002 Msa0225460:intron 50.0%
GCATCTACGCCGGTATTTCT+TGG + chr2_1:75590087-75590106 None:intergenic 50.0%
CAAGCCCAAAGAAGAAGAGC+AGG - chr2_1:75590259-75590278 Msa0225460:intron 50.0%
GGATTACTCGTCGGTCCATT+TGG - chr2_1:75590390-75590409 Msa0225460:intron 50.0%
TGGAGTCCTCAGAAACGTTC+CGG - chr2_1:75590438-75590457 Msa0225460:CDS 50.0%
CCCCTTCCTATTACATGTCC+CGG + chr2_1:75590460-75590479 None:intergenic 50.0%
CCGGGACATGTAATAGGAAG+GGG - chr2_1:75590457-75590476 Msa0225460:intron 50.0%
CGGGACATGTAATAGGAAGG+GGG - chr2_1:75590458-75590477 Msa0225460:intron 50.0%
TTCCACGAGCTTTCCATGAC+CGG - chr2_1:75590522-75590541 Msa0225460:intron 50.0%
CAACATTGAGAGTGGAGCTC+CGG + chr2_1:75590544-75590563 None:intergenic 50.0%
! GCAACAGAGCTTTTGAGCTG+TGG - chr2_1:75590570-75590589 Msa0225460:intron 50.0%
AGCTGTTGCACTTAGCAGGA+AGG - chr2_1:75590605-75590624 Msa0225460:intron 50.0%
GCTGTTGCACTTAGCAGGAA+GGG - chr2_1:75590606-75590625 Msa0225460:intron 50.0%
!! GGACGACCTAGTCTTTTGAC+CGG - chr2_1:75591043-75591062 Msa0225460:intron 50.0%
AAGTAGCATCAACCCCGGAA+AGG - chr2_1:75592008-75592027 Msa0225460:intron 50.0%
AGTAGCATCAACCCCGGAAA+GGG - chr2_1:75592009-75592028 Msa0225460:intron 50.0%
AAGCAATAGCTGGCCCTTTC+CGG + chr2_1:75592025-75592044 None:intergenic 50.0%
CAGGGACTTGGAGAGACATT+TGG - chr2_1:75593144-75593163 Msa0225460:CDS 50.0%
TAGAGGCAACCACTATCGGA+AGG + chr2_1:75593604-75593623 None:intergenic 50.0%
! AGGTTCTCGGAACGGATTCT+GGG - chr2_1:75593829-75593848 Msa0225460:CDS 50.0%
ATCCAATTGGACGTGCAGCA+GGG - chr2_1:75593895-75593914 Msa0225460:five_prime_UTR 50.0%
CCATTTGCTTCCTTGCCAAC+TGG + chr2_1:75593962-75593981 None:intergenic 50.0%
CCAGTTGGCAAGGAAGCAAA+TGG - chr2_1:75593959-75593978 Msa0225460:five_prime_UTR 50.0%
AGCAAATGGGGATAGAAGGC+AGG - chr2_1:75593973-75593992 Msa0225460:five_prime_UTR 50.0%
GGGGATAGAAGGCAGGAAAA+AGG - chr2_1:75593980-75593999 Msa0225460:five_prime_UTR 50.0%
AGTCGAACGCCGAGGAAAGA+AGG - chr2_1:75589910-75589929 Msa0225460:intron 55.0%
GGAACCGGGCCAAGAAATAC+CGG - chr2_1:75590075-75590094 Msa0225460:intron 55.0%
TACGCCGGTATTTCTTGGCC+CGG + chr2_1:75590082-75590101 None:intergenic 55.0%
ACTCGGATCAGCATCTACGC+CGG + chr2_1:75590097-75590116 None:intergenic 55.0%
! GGGCTTGCTTTACGACGAGA+AGG + chr2_1:75590246-75590265 None:intergenic 55.0%
GGAGTCCTCAGAAACGTTCC+GGG - chr2_1:75590439-75590458 Msa0225460:CDS 55.0%
CATGTCCCGGAACGTTTCTG+AGG + chr2_1:75590447-75590466 None:intergenic 55.0%
! GGGACTTTGCACGCCTTGTT+TGG - chr2_1:75590478-75590497 Msa0225460:intron 55.0%
CGGAGCTCCACTCTCAATGT+TGG - chr2_1:75590542-75590561 Msa0225460:intron 55.0%
GTTGCACTTAGCAGGAAGGG+TGG - chr2_1:75590609-75590628 Msa0225460:intron 55.0%
TGCGAGCCAAGTTGCTTGGT+GGG - chr2_1:75591669-75591688 Msa0225460:CDS 55.0%
CCATGACCCACCAAGCAACT+TGG + chr2_1:75591678-75591697 None:intergenic 55.0%
! CCAAGTTGCTTGGTGGGTCA+TGG - chr2_1:75591675-75591694 Msa0225460:CDS 55.0%
AGCAATAGCTGGCCCTTTCC+GGG + chr2_1:75592024-75592043 None:intergenic 55.0%
AGGCAACCTGTGTTGTGGCT+GGG + chr2_1:75592485-75592504 None:intergenic 55.0%
ATGGGAGCAGGTTCTCGGAA+CGG - chr2_1:75593821-75593840 Msa0225460:CDS 55.0%
! CAGGTTCTCGGAACGGATTC+TGG - chr2_1:75593828-75593847 Msa0225460:CDS 55.0%
! GGTTCTCGGAACGGATTCTG+GGG - chr2_1:75593830-75593849 Msa0225460:CDS 55.0%
! GTTCTCGGAACGGATTCTGG+GGG - chr2_1:75593831-75593850 Msa0225460:CDS 55.0%
! AACGGATTCTGGGGGAACGA+AGG - chr2_1:75593839-75593858 Msa0225460:CDS 55.0%
CATCCAATTGGACGTGCAGC+AGG - chr2_1:75593894-75593913 Msa0225460:five_prime_UTR 55.0%
TTCCCTGCTGCACGTCCAAT+TGG + chr2_1:75593900-75593919 None:intergenic 55.0%
CAGGGAACGATGTCCTTGCA+CGG - chr2_1:75593913-75593932 Msa0225460:five_prime_UTR 55.0%
CTCCGGTCATGGAAAGCTCG+TGG + chr2_1:75590527-75590546 None:intergenic 60.0%
TGAGAGTGGAGCTCCGGTCA+TGG + chr2_1:75590538-75590557 None:intergenic 60.0%
GTGCGAGCCAAGTTGCTTGG+TGG - chr2_1:75591668-75591687 Msa0225460:CDS 60.0%
GCAATAGCTGGCCCTTTCCG+GGG + chr2_1:75592023-75592042 None:intergenic 60.0%
GGCAACCTGTGTTGTGGCTG+GGG + chr2_1:75592484-75592503 None:intergenic 60.0%
GAGGCAACCTGTGTTGTGGC+TGG + chr2_1:75592486-75592505 None:intergenic 60.0%
GGCACACTGCCTTCCGATAG+TGG - chr2_1:75593592-75593611 Msa0225460:CDS 60.0%
CGGGTGCGAGCCAAGTTGCT+TGG - chr2_1:75591665-75591684 Msa0225460:CDS 65.0%
GTGGACCCCAGCCACAACAC+AGG - chr2_1:75592476-75592495 Msa0225460:intron 65.0%
! GCAACTTGGCTCGCACCCGC+CGG + chr2_1:75591664-75591683 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 75589289 75594320 75589289 ID=Msa0225460;Name=Msa0225460
chr2_1 mRNA 75589289 75594320 75589289 ID=Msa0225460-mRNA-1;Parent=Msa0225460;Name=Msa0225460-mRNA-1;_AED=0.03;_eAED=0.03;_QI=176|1|1|1|0.8|0.66|6|241|710
chr2_1 exon 75589289 75589778 75589289 ID=Msa0225460-mRNA-1:exon:22679;Parent=Msa0225460-mRNA-1
chr2_1 exon 75590406 75590462 75590406 ID=Msa0225460-mRNA-1:exon:22678;Parent=Msa0225460-mRNA-1
chr2_1 exon 75591064 75591286 75591064 ID=Msa0225460-mRNA-1:exon:22677;Parent=Msa0225460-mRNA-1
chr2_1 exon 75591380 75591968 75591380 ID=Msa0225460-mRNA-1:exon:22676;Parent=Msa0225460-mRNA-1
chr2_1 exon 75592853 75594007 75592853 ID=Msa0225460-mRNA-1:exon:22675;Parent=Msa0225460-mRNA-1
chr2_1 exon 75594285 75594320 75594285 ID=Msa0225460-mRNA-1:exon:22674;Parent=Msa0225460-mRNA-1
chr2_1 five_prime_UTR 75594285 75594320 75594285 ID=Msa0225460-mRNA-1:five_prime_utr;Parent=Msa0225460-mRNA-1
chr2_1 five_prime_UTR 75593868 75594007 75593868 ID=Msa0225460-mRNA-1:five_prime_utr;Parent=Msa0225460-mRNA-1
chr2_1 CDS 75592853 75593867 75592853 ID=Msa0225460-mRNA-1:cds;Parent=Msa0225460-mRNA-1
chr2_1 CDS 75591380 75591968 75591380 ID=Msa0225460-mRNA-1:cds;Parent=Msa0225460-mRNA-1
chr2_1 CDS 75591064 75591286 75591064 ID=Msa0225460-mRNA-1:cds;Parent=Msa0225460-mRNA-1
chr2_1 CDS 75590406 75590462 75590406 ID=Msa0225460-mRNA-1:cds;Parent=Msa0225460-mRNA-1
chr2_1 CDS 75589530 75589778 75589530 ID=Msa0225460-mRNA-1:cds;Parent=Msa0225460-mRNA-1
chr2_1 three_prime_UTR 75589289 75589529 75589289 ID=Msa0225460-mRNA-1:three_prime_utr;Parent=Msa0225460-mRNA-1
Gene Sequence

>Msa0225460

ATGATTGTTGAGGAAAGGAATATAATGGAGGAAAGCAGCAATAGAGGTGAATTTCAGGCTAGTTTAGCGAAACTATCTTCATTAAGATCAGGTGGAAGTTTTAAATCAACATTATCAGGAAGATCGTCTCCGCGAAATAATTCTCCTTCGTTTCGAAGACTAAACTCTAGTCGAACGCCGAGGAAAGAAGGAAGAACTTTTGGTGGTTTTCTGTTGTTTCGGAGCAATCGTGTGTTGTTGTGGCTGCTTCTAATTACCCTCTGGGCTTATCTTGGTATTTTTTTTCAGTCCAGGTGGGCACATATTGATAAGAAGGAGGAATTTTCTGGCTTTGGAACCGGGCCAAGAAATACCGGCGTAGATGCTGATCCGAGTCTTCGCCGTGATTTGATTGCTAGTGATGACTCCTTGTCTGTTAATAATGAGACGGTTAGAAATAAAGGAGGGATTGGTAGAACAATAAATGTAGCCTTGGCAAAGAAGGAAAGTGATGATGAGGTTCCTTCTCGTCGTAAAGCAAGCCCAAAGAAGAAGAGCAGGAGATCTTCGAAAGGTAAAGCTCGTGGTAAGAAGAAACCAATTGTGGAAATTAAGAACAATGATATAGAAGAGCAGGAACCAGAAATTCCTCAAACCAATAGTACGTATGGATTACTCGTCGGTCCATTTGGCTCAACAGAAGATAGGATTTTGGAATGGAGTCCTCAGAAACGTTCCGGGACATGTAATAGGAAGGGGGACTTTGCACGCCTTGTTTGGTCGAGAAGATTTATCTTGATATTCCACGAGCTTTCCATGACCGGAGCTCCACTCTCAATGTTGGAATTGGCAACAGAGCTTTTGAGCTGTGGTGCCACTGTTTCAGCTGTTGCACTTAGCAGGAAGGGTGGTTTGATGTCAGAGCTTTCTAGAAGACGAATCAAGGTGCTTGAGGACAAAGCAGATCAAAGCTTCAAAACTGCAATGAAGGCTGATCTTGTAATTGCTGGTTCAGCTGTATGTGCATCATGGATTGAACAATATATTGAACGTTTTCCGGCGGGTGCGAGCCAAGTTGCTTGGTGGGTCATGGAAAACCGTAGAGAGTACTTCGACCGTTCAAAGGGTGTCTTGCACAGAGTAAAGATGTTGGTTTTTCTTTCTGAATCACAATCTAAACAATGGCAAAAGTGGTGCGAAGAAGAAAACATAAAACTGAGATACCAACCTGCAACTGTTCCTTTGTCTGTTAATGATGAACTGGCATTTGTAGCCGGCATTCCTTCTACACTTAACACTCCGTCCTTTAGTACTGATAAAATGATTGAGAAAAGGCAGTTGTTGCGAGAATCGGTCCGAAAAGAAATGGGATTAACTGACAATGATATGCTTGTAATATCTCTAAGTAGCATCAACCCCGGAAAGGGCCAGCTATTGCTTCTTGAATCAGCAAGCTCAGTAGTAGAACACAAACAATTGCAAGATGATAAGAACATGAAAAAATTATCAAATATAAAGGAAGGCTTGTCTACACGGACTAGAAGACATCGTATGAGAAAATTGTTACCATTGTTGAAAGATGGCAAAGTAGCTCTGAAGGATACCTCAAACAATTCTTTAAGCAGAAGGAAGCAATTGTTGGCTAATAACAAAGCAACAATGCAGCAATCTCTCAAAGTTCTCATTGGTTCTGTTGGATCCAAAAGTAACAAGGTGGATTATGTTAAAAGCCTTCTCAGTTTCTTAGAACAGCATCCAAACACTTCAAAATCAGTTTTGTGGACCCCAGCCACAACACAGGTTGCCTCATTATACTCTGCAGCAGATGTTTATGCCATAAACTCTCAGGGACTTGGAGAGACATTTGGACGGGTGACTATAGAAGCAATGGCATTTGGTCTTCCGGTTCTCGGAACGGATTCTGGGGGAACGAAGGAGATAGTTGAGAACAATGTTACAGGTCTTCTTCATCCAATTGGACGTGCAGCAGGGAACGATGTCCTTGCACGGAATCTTCTGTATTTGCTTAAAAACCAGTTGGCAAGGAAGCAAATGGGGATAGAAGGCAGGAAAAAGGTGGAGAGAATGTATTTGAAGCAACACATGTATAAGAAATTTGTTGAGGTTATTGTTAGGTGCATGAGAAGCAAATAA

Protein sequence

>Msa0225460

MIVEERNIMEESSNRGEFQASLAKLSSLRSGGSFKSTLSGRSSPRNNSPSFRRLNSSRTPRKEGRTFGGFLLFRSNRVLLWLLLITLWAYLGIFFQSRWAHIDKKEEFSGFGTGPRNTGVDADPSLRRDLIASDDSLSVNNETVRNKGGIGRTINVALAKKESDDEVPSRRKASPKKKSRRSSKGKARGKKKPIVEIKNNDIEEQEPEIPQTNSTYGLLVGPFGSTEDRILEWSPQKRSGTCNRKGDFARLVWSRRFILIFHELSMTGAPLSMLELATELLSCGATVSAVALSRKGGLMSELSRRRIKVLEDKADQSFKTAMKADLVIAGSAVCASWIEQYIERFPAGASQVAWWVMENRREYFDRSKGVLHRVKMLVFLSESQSKQWQKWCEEENIKLRYQPATVPLSVNDELAFVAGIPSTLNTPSFSTDKMIEKRQLLRESVRKEMGLTDNDMLVISLSSINPGKGQLLLLESASSVVEHKQLQDDKNMKKLSNIKEGLSTRTRRHRMRKLLPLLKDGKVALKDTSNNSLSRRKQLLANNKATMQQSLKVLIGSVGSKSNKVDYVKSLLSFLEQHPNTSKSVLWTPATTQVASLYSAADVYAINSQGLGETFGRVTIEAMAFGLPVLGTDSGGTKEIVENNVTGLLHPIGRAAGNDVLARNLLYLLKNQLARKQMGIEGRKKVERMYLKQHMYKKFVEVIVRCMRSK*