AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1078880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078880 MtrunA17_Chr7g0263701 94.884 606 30 1 3 608 6 610 0.0 1052
Msa1078880 MtrunA17_Chr1g0181611 61.165 618 188 8 3 608 9 586 0.0 630
Msa1078880 MtrunA17_Chr4g0030031 46.021 578 283 5 48 605 49 617 1.78e-142 427
Msa1078880 MtrunA17_Chr2g0326021 41.232 422 218 9 192 605 133 532 1.09e-69 235
Msa1078880 MtrunA17_Chr5g0395261 26.590 346 181 11 1 302 13 329 1.96e-12 70.5
Msa1078880 MtrunA17_Chr4g0039981 27.215 316 197 12 1 287 1 312 2.29e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078880 AT2G37080.3 48.083 626 251 14 4 607 7 580 2.53e-156 461
Msa1078880 AT2G37080.1 47.930 628 251 15 4 607 7 582 3.60e-154 456
Msa1078880 AT2G37080.2 47.930 628 251 15 4 607 7 582 3.60e-154 456
Msa1078880 AT5G60210.2 38.953 611 310 10 3 605 6 561 9.04e-105 328
Msa1078880 AT5G60210.4 38.953 611 310 10 3 605 6 561 9.04e-105 328
Msa1078880 AT5G60210.1 38.953 611 310 10 3 605 6 561 9.04e-105 328
Msa1078880 AT5G60210.6 38.953 611 310 10 3 605 6 561 9.04e-105 328
Msa1078880 AT5G60210.5 38.662 613 313 10 1 605 28 585 4.69e-104 327
Msa1078880 AT5G60210.3 38.662 613 313 10 1 605 28 585 4.69e-104 327
Msa1078880 AT3G53350.8 37.571 354 173 15 1 333 15 341 1.11e-41 155
Msa1078880 AT3G53350.8 35.955 356 106 11 258 607 165 404 1.33e-35 139
Msa1078880 AT3G53350.3 37.784 352 171 15 3 333 6 330 1.56e-41 155
Msa1078880 AT3G53350.3 36.415 357 103 12 258 607 154 393 7.13e-36 139
Msa1078880 AT3G53350.2 37.784 352 171 15 3 333 6 330 1.56e-41 155
Msa1078880 AT3G53350.2 36.415 357 103 12 258 607 154 393 7.13e-36 139
Msa1078880 AT3G53350.4 37.360 356 173 16 1 333 15 343 8.58e-40 150
Msa1078880 AT3G53350.4 32.773 476 183 15 142 607 58 406 8.86e-36 139
Msa1078880 AT3G53350.6 37.360 356 173 16 1 333 15 343 8.58e-40 150
Msa1078880 AT3G53350.6 32.773 476 183 15 142 607 58 406 8.86e-36 139
Msa1078880 AT3G53350.7 37.571 354 171 16 3 333 6 332 9.76e-40 150
Msa1078880 AT3G53350.7 32.704 477 182 15 142 607 47 395 2.63e-36 140
Msa1078880 AT3G53350.1 37.571 354 171 16 3 333 6 332 9.76e-40 150
Msa1078880 AT3G53350.1 32.704 477 182 15 142 607 47 395 2.63e-36 140
Msa1078880 AT3G53350.5 37.571 354 171 16 3 333 6 332 9.76e-40 150
Msa1078880 AT3G53350.5 32.704 477 182 15 142 607 47 395 2.63e-36 140
Msa1078880 AT3G53350.9 34.908 381 170 16 4 333 7 360 1.31e-35 139
Msa1078880 AT3G53350.9 35.955 356 106 11 258 607 184 423 3.23e-35 138
Msa1078880 AT1G78430.1 35.294 170 97 4 437 605 163 320 5.07e-16 80.1
Msa1078880 AT1G17140.1 35.028 177 95 7 437 605 176 340 1.38e-13 72.8
Msa1078880 AT1G17140.2 35.028 177 95 7 437 605 176 340 1.38e-13 72.8

Find 126 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTCCTTTGGGACATTTC+TGG 0.157878 7_2:+77887292 None:intergenic
CAGGAAAATGAGGAGATAAA+TGG 0.230127 7_2:-77885719 Msa1078880:CDS
TCACGAGCTTTAGAAGTAAT+TGG 0.259559 7_2:-77885929 Msa1078880:CDS
GTCTGATCATGCTCAGATTC+AGG 0.282526 7_2:-77886032 Msa1078880:CDS
TCATCTGTGTCTTCTAAATA+AGG 0.285675 7_2:+77884903 None:intergenic
CAGAGTTGGAAGCCGAATTA+AGG 0.288025 7_2:-77885076 Msa1078880:CDS
AGCAAGTAGTATCAAAATTA+TGG 0.289089 7_2:-77884626 Msa1078880:three_prime_UTR
CAATTTATGTATTTCATTCA+TGG 0.304232 7_2:+77886111 None:intergenic
GTTTCAAATACCTCAGATAT+TGG 0.308574 7_2:+77887127 None:intergenic
GGTATCTTTCTTATGGGGTT+TGG 0.312528 7_2:+77887196 None:intergenic
TTGTAGCAGGTGATTTCCTT+TGG 0.322465 7_2:+77887281 None:intergenic
AACTTTCAATCTCCTTAATT+CGG 0.325865 7_2:+77885064 None:intergenic
ACTTTCGGACTCATGTCTTT+TGG 0.331128 7_2:+77887175 None:intergenic
TCAAGCTGTTCAACCGTTAT+AGG 0.334380 7_2:-77884705 Msa1078880:three_prime_UTR
AATCCATTGAGTGCTGCTTT+TGG 0.335138 7_2:+77886152 None:intergenic
CAACTGCTCTACTTCAGATT+TGG 0.349820 7_2:+77885673 None:intergenic
GACTAGCAAGGTTCAGGAAT+TGG 0.351633 7_2:-77886428 Msa1078880:CDS
AACCTGCGTTCGTTTACTTT+CGG 0.363041 7_2:+77887160 None:intergenic
TGGATGTTGTTATTATTGTT+AGG 0.377779 7_2:-77884760 Msa1078880:three_prime_UTR
TAGTGAAGCTATCTCTGTTA+TGG 0.380107 7_2:-77885993 Msa1078880:CDS
TTCTTGAAGTCGTGCTTCTT+CGG 0.385930 7_2:+77886231 None:intergenic
TATCCTCAAGATGGAGATAA+AGG 0.393747 7_2:-77885270 Msa1078880:CDS
GAAGCGGACTAGCAAGGTTC+AGG 0.395117 7_2:-77886434 Msa1078880:CDS
CAGAGTTTGGTGTCTTCAAC+TGG 0.396120 7_2:+77887242 None:intergenic
ATTATGGATGAAAATGTGTT+TGG 0.399588 7_2:-77884610 Msa1078880:three_prime_UTR
TTCTAATCTGCAATGTGCTC+TGG 0.400148 7_2:+77885603 None:intergenic
TTGGGACATTTCTGGAGCAT+TGG 0.409864 7_2:+77887300 None:intergenic
TGGCAAAATGCAAATGCAAT+TGG 0.415697 7_2:-77885909 Msa1078880:CDS
GTTGTTAGTCTGAGAAAATT+CGG 0.416762 7_2:+77886060 None:intergenic
TGTAGCAGGTGATTTCCTTT+GGG 0.418456 7_2:+77887282 None:intergenic
TAGAAGTGCTTACGAACAAC+TGG 0.419369 7_2:-77885585 Msa1078880:CDS
CTGAGAAAGTCCCTTTCCAT+TGG 0.424088 7_2:+77885739 None:intergenic
GACAAAACTTAGCTATGTAA+TGG 0.430384 7_2:-77885171 Msa1078880:CDS
CTCAATGGATTCATCTGCTC+TGG 0.431947 7_2:-77886140 Msa1078880:CDS
TACTTCTAAAGCTCGTGATT+CGG 0.433669 7_2:+77885934 None:intergenic
TCTTATGGGGTTTGGTGAGG+AGG 0.433762 7_2:+77887204 None:intergenic
GCCGAGTTAGAACCAGAGTT+TGG 0.447004 7_2:+77887229 None:intergenic
CAATGGAAAGGGACTTTCTC+AGG 0.447323 7_2:-77885738 Msa1078880:CDS
TTCCTCTTGGTATCTTATCT+CGG 0.450936 7_2:+77885631 None:intergenic
TGTTAGGTATTACTAGTGTC+TGG 0.453787 7_2:-77884744 Msa1078880:three_prime_UTR
AGGAAAATGAGGAGATAAAT+GGG 0.455434 7_2:-77885718 Msa1078880:CDS
CGAACAGCTAGATGCTGCTC+AGG 0.462034 7_2:-77885108 Msa1078880:CDS
ATCTCAATTGCTGAGTTTGT+CGG 0.465945 7_2:-77885456 Msa1078880:CDS
TATGGGGTTTGGTGAGGAGG+AGG 0.467777 7_2:+77887207 None:intergenic
CTTTCTTATGGGGTTTGGTG+AGG 0.468528 7_2:+77887201 None:intergenic
GGATTTGATGACAATAAAAC+AGG 0.472389 7_2:+77884651 None:intergenic
ACAGCTTGATTCAAGAAAGT+TGG 0.472665 7_2:+77884719 None:intergenic
AAAATCTCAAGCAAAATCCT+TGG 0.473358 7_2:-77885795 Msa1078880:CDS
TGCTCTGGATGTATTCCTCT+TGG 0.476597 7_2:+77885618 None:intergenic
CTGAATTATACGAGGAATTG+AGG 0.480140 7_2:-77885529 Msa1078880:CDS
AACAGCAAGGGCTGCAGAGA+AGG 0.483686 7_2:-77885201 Msa1078880:CDS
GAGTTTGTCGGCGGAGAATG+AGG 0.485321 7_2:-77885444 Msa1078880:CDS
AAAAGCAAGCCTGATGGAAA+AGG 0.487342 7_2:-77885480 Msa1078880:CDS
AGAACTCAGTAAAATATCTC+AGG 0.492404 7_2:-77886212 Msa1078880:CDS
CTGAGCAGCATCTAGCTGTT+CGG 0.497006 7_2:+77885109 None:intergenic
TATGCTAATTGGCTTATGGC+TGG 0.501671 7_2:-77887328 None:intergenic
CTTTCTACCACCGGAAACAA+TGG 0.502144 7_2:-77884996 Msa1078880:CDS
TAATTCAGCCTCTCTCTCAC+TGG 0.507829 7_2:+77885544 None:intergenic
AAGTCGTGCTTCTTCGGAAG+CGG 0.510056 7_2:+77886237 None:intergenic
ATGAAAAGCGATCTACTGAC+AGG 0.512449 7_2:-77885403 Msa1078880:CDS
TTCAACTGGCGAGCAGTTCG+AGG 0.516234 7_2:+77887256 None:intergenic
ATCTCAAGCAAAATCCTTGG+AGG 0.518596 7_2:-77885792 Msa1078880:CDS
CTTGACACTGATTCAACCAA+TGG 0.522965 7_2:-77885755 Msa1078880:CDS
AACTTAACTCATCGGAGTCA+TGG 0.524619 7_2:-77886357 Msa1078880:CDS
CAAGATGGAGATAAAGGAGT+TGG 0.532655 7_2:-77885264 Msa1078880:CDS
ACTGTCCCTGTCAAAAGAGC+TGG 0.533173 7_2:-77886290 Msa1078880:CDS
GCAGTTCGAGGAGTTGTAGC+AGG 0.533468 7_2:+77887268 None:intergenic
GGGACTTTCTCAGGAAAATG+AGG 0.534716 7_2:-77885729 Msa1078880:CDS
AGAAAACAGTATCCTCAAGA+TGG 0.537638 7_2:-77885279 Msa1078880:CDS
AGAGCAGTTGAAATCTGCAT+TGG 0.538094 7_2:-77885660 Msa1078880:CDS
TGTCCAAAAGCAGCACTCAA+TGG 0.543706 7_2:-77886155 Msa1078880:CDS
GACAGTGGAGACACTCCAAT+CGG 0.544738 7_2:-77885873 Msa1078880:CDS
CACTGAAGAGGCTGTTGAGT+CGG 0.545865 7_2:-77885228 Msa1078880:CDS
ATCAGAATCCAGTGAGAGAG+AGG 0.548200 7_2:-77885552 Msa1078880:CDS
ACTGATTCAACCAATGGAAA+GGG 0.548724 7_2:-77885749 Msa1078880:CDS
TTGTAGAAACAAAATACAGT+AGG 0.551756 7_2:+77884680 None:intergenic
GGAAACAATGGAAAATGTGT+AGG 0.557199 7_2:-77884984 Msa1078880:CDS
AGTTTGTCGGCGGAGAATGA+GGG 0.561099 7_2:-77885443 Msa1078880:CDS
CACTGATTCAACCAATGGAA+AGG 0.561480 7_2:-77885750 Msa1078880:CDS
ATGCTCAGATTCAGGACTTG+AGG 0.568384 7_2:-77886024 Msa1078880:CDS
AAGGTCCGAAAACTGTTGAC+GGG 0.568934 7_2:+77886261 None:intergenic
ATGGAAGACAAAAGTTCAAG+AGG 0.570660 7_2:-77886338 Msa1078880:CDS
GAAACAATGGAAAATGTGTA+GGG 0.570873 7_2:-77884983 Msa1078880:CDS
TTGTTCCAACTCAAAAGCTA+AGG 0.572666 7_2:+77885820 None:intergenic
AAAGGTCCGAAAACTGTTGA+CGG 0.573588 7_2:+77886260 None:intergenic
TGTAGAAACAAAATACAGTA+GGG 0.573798 7_2:+77884681 None:intergenic
ACCAAACTCTGGTTCTAACT+CGG 0.577387 7_2:-77887230 Msa1078880:CDS
ACTCCTTTATCTCCATCTTG+AGG 0.578972 7_2:+77885267 None:intergenic
GCAGAATAAAATCACTGAAG+AGG 0.581197 7_2:-77885240 Msa1078880:CDS
GAATTGAGGAAAGCTATAGC+TGG 0.584443 7_2:-77885515 Msa1078880:CDS
TTTCCTCACAAGTTCCTCCA+AGG 0.584609 7_2:+77885778 None:intergenic
CAGTTGAAGACACCAAACTC+TGG 0.589837 7_2:-77887241 Msa1078880:CDS
CTCAGGATCGAGATCGTGCA+TGG 0.590550 7_2:-77886195 Msa1078880:CDS
TCAGGCTGCAAATTCAGAGT+TGG 0.590572 7_2:-77885090 Msa1078880:CDS
AATACAGTAGGGTCCTATAA+CGG 0.593252 7_2:+77884692 None:intergenic
TTAGAAGAAGCGGACTAGCA+AGG 0.593878 7_2:-77886440 Msa1078880:intron
TAGCTATGTAATGGAAGAAG+CGG 0.596332 7_2:-77885162 Msa1078880:CDS
TTGAGTCGGTTGAAACAGCA+AGG 0.601134 7_2:-77885214 Msa1078880:CDS
AGAGCTAAAAGCAAGCCTGA+TGG 0.601156 7_2:-77885486 Msa1078880:CDS
GTGCTTCTTCGGAAGCGGAA+AGG 0.601435 7_2:+77886242 None:intergenic
AGAAGATCTGAAGAGTGCTA+AGG 0.601647 7_2:-77886383 Msa1078880:CDS
TAAGGATCAACTTAACTCAT+CGG 0.603512 7_2:-77886365 Msa1078880:CDS
GCATCTATACTTTCTACCAC+CGG 0.615034 7_2:-77885005 Msa1078880:CDS
TGCATGGCAATCTGAACTTG+AGG 0.624261 7_2:-77886179 Msa1078880:CDS
AGAAGATTGGAGTGTTGTGG+AGG 0.624386 7_2:-77884845 Msa1078880:CDS
GTTTGTCGGCGGAGAATGAG+GGG 0.630308 7_2:-77885442 Msa1078880:CDS
TGAAAGTTCAGTCTGATCAG+TGG 0.639619 7_2:-77885049 Msa1078880:CDS
TCAATTGCTGAGTTTGTCGG+CGG 0.644952 7_2:-77885453 Msa1078880:CDS
GTGGAGACACTCCAATCGGA+TGG 0.646462 7_2:-77885869 Msa1078880:CDS
TGATCAGTGGAGAAAAGCAG+CGG 0.646992 7_2:-77885036 Msa1078880:CDS
ATCACACAGTCCAATATCTG+AGG 0.647969 7_2:-77887137 Msa1078880:intron
AATCCTTGGAGGAACTTGTG+AGG 0.648483 7_2:-77885781 Msa1078880:CDS
TCAGATTCAGGACTTGAGGA+TGG 0.651660 7_2:-77886020 Msa1078880:CDS
TCAGTGGAGAAAAGCAGCGG+AGG 0.652899 7_2:-77885033 Msa1078880:CDS
TGAAGAAGATTGGAGTGTTG+TGG 0.655720 7_2:-77884848 Msa1078880:CDS
GAAGACAAAAGTTCAAGAGG+AGG 0.660033 7_2:-77886335 Msa1078880:CDS
GGATAAAAGTAACAGAAGAG+TGG 0.662477 7_2:-77885141 Msa1078880:CDS
TGCCGAGATAAGATACCAAG+AGG 0.662730 7_2:-77885633 Msa1078880:CDS
ATGCTCCAGAAATGTCCCAA+AGG 0.664123 7_2:-77887297 Msa1078880:CDS
TGAAAAGCGATCTACTGACA+GGG 0.672889 7_2:-77885402 Msa1078880:CDS
GTCCGAAAGTAAACGAACGC+AGG 0.685794 7_2:-77887162 Msa1078880:CDS
GGAAACAGTAAATAAGACAG+TGG 0.686379 7_2:-77885888 Msa1078880:CDS
AGATTTGGCAGAGATAAGCG+CGG 0.695807 7_2:+77885688 None:intergenic
TGAGTCGGTTGAAACAGCAA+GGG 0.701089 7_2:-77885213 Msa1078880:CDS
TGGATACTGATGTTGCAGAG+TGG 0.711923 7_2:-77885349 Msa1078880:CDS
GAGAGAGGCTGAATTATACG+AGG 0.729149 7_2:-77885537 Msa1078880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATTAATCAATTAAGTT+GGG + chr7_2:77884946-77884965 None:intergenic 10.0%
!!! GATGAATATTAAAAATATTT+TGG + chr7_2:77885402-77885421 None:intergenic 10.0%
!! CATAAATTAATCAATTAAGT+TGG + chr7_2:77884947-77884966 None:intergenic 15.0%
!!! GATTAATTTATGAGTATTTT+TGG - chr7_2:77884955-77884974 Msa1078880:CDS 15.0%
!! AAATATCAAATATAAGCAAA+TGG + chr7_2:77885105-77885124 None:intergenic 15.0%
!!! GTTCGTAAATTTTTTTTTTA+TGG - chr7_2:77885324-77885343 Msa1078880:CDS 15.0%
!! TAATAATAATTGAGTTCAGA+GGG + chr7_2:77884813-77884832 None:intergenic 20.0%
!! ATAATAATAATTGAGTTCAG+AGG + chr7_2:77884814-77884833 None:intergenic 20.0%
!! ATCTTGAATTCATGTAAAAA+CGG - chr7_2:77884876-77884895 Msa1078880:CDS 20.0%
!! AGAGATAATTATTATAACGA+GGG + chr7_2:77884922-77884941 None:intergenic 20.0%
!! AAGAGATAATTATTATAACG+AGG + chr7_2:77884923-77884942 None:intergenic 20.0%
!! TGGAATAATAACATTAAATG+TGG - chr7_2:77884975-77884994 Msa1078880:CDS 20.0%
!! CAATTTATGTATTTCATTCA+TGG + chr7_2:77885802-77885821 None:intergenic 20.0%
!!! ATGTTTTTGTTTTTCTTCTT+TGG + chr7_2:77887040-77887059 None:intergenic 20.0%
!! TCTTTTGGTATCTTTCTTAT+GGG + chr7_2:77884723-77884742 None:intergenic 25.0%
! GAGATAATTATTATAACGAG+GGG + chr7_2:77884921-77884940 None:intergenic 25.0%
! TATTTGAGTCCAACAAATTT+AGG - chr7_2:77885120-77885139 Msa1078880:CDS 25.0%
! TATTTGAGTCCAACAAATTT+AGG - chr7_2:77885120-77885139 Msa1078880:CDS 25.0%
! AGTATCTATCAATATCATCA+AGG + chr7_2:77885270-77885289 None:intergenic 25.0%
! GATAGATACTTATTGTTTAG+TGG - chr7_2:77885280-77885299 Msa1078880:CDS 25.0%
!! TTATAATGTGTCTCTTTTTC+TGG - chr7_2:77885445-77885464 Msa1078880:CDS 25.0%
! TATGGAAAAACTAAGAAATG+AGG - chr7_2:77885935-77885954 Msa1078880:CDS 25.0%
!!! TTCAGTTACTTTTTTCAACT+CGG + chr7_2:77886612-77886631 None:intergenic 25.0%
! AACTTTCAATCTCCTTAATT+CGG + chr7_2:77886849-77886868 None:intergenic 25.0%
!! TGTACTCTTTTTATTCTTAC+TGG - chr7_2:77887130-77887149 Msa1078880:intron 25.0%
!! TGGATGTTGTTATTATTGTT+AGG - chr7_2:77887150-77887169 Msa1078880:CDS 25.0%
! TGTAGAAACAAAATACAGTA+GGG + chr7_2:77887232-77887251 None:intergenic 25.0%
! TTGTAGAAACAAAATACAGT+AGG + chr7_2:77887233-77887252 None:intergenic 25.0%
!!! AATTTTGATACTACTTGCTA+AGG + chr7_2:77887283-77887302 None:intergenic 25.0%
! AGCAAGTAGTATCAAAATTA+TGG - chr7_2:77887284-77887303 Msa1078880:CDS 25.0%
! ATTATGGATGAAAATGTGTT+TGG - chr7_2:77887300-77887319 Msa1078880:CDS 25.0%
! CTTTTGGTATCTTTCTTATG+GGG + chr7_2:77884722-77884741 None:intergenic 30.0%
! GTCTTTTGGTATCTTTCTTA+TGG + chr7_2:77884724-77884743 None:intergenic 30.0%
GTTTCAAATACCTCAGATAT+TGG + chr7_2:77884786-77884805 None:intergenic 30.0%
!! AAAAGAGTGCCTAAATTTGT+TGG + chr7_2:77885132-77885151 None:intergenic 30.0%
!! AAAAGAGTGCCTAAATTTGT+TGG + chr7_2:77885132-77885151 None:intergenic 30.0%
! TCTTTTGCTAATAATGTGGA+TGG - chr7_2:77885198-77885217 Msa1078880:CDS 30.0%
! CTTTTGCTAATAATGTGGAT+GGG - chr7_2:77885199-77885218 Msa1078880:CDS 30.0%
TAAGGATCAACTTAACTCAT+CGG - chr7_2:77885545-77885564 Msa1078880:CDS 30.0%
AGAACTCAGTAAAATATCTC+AGG - chr7_2:77885698-77885717 Msa1078880:CDS 30.0%
! GTTGTTAGTCTGAGAAAATT+CGG + chr7_2:77885853-77885872 None:intergenic 30.0%
AAAATCTCAAGCAAAATCCT+TGG - chr7_2:77886115-77886134 Msa1078880:CDS 30.0%
AGGAAAATGAGGAGATAAAT+GGG - chr7_2:77886192-77886211 Msa1078880:CDS 30.0%
GACAAAACTTAGCTATGTAA+TGG - chr7_2:77886739-77886758 Msa1078880:intron 30.0%
! TACACATTTTCCATTGTTTC+CGG + chr7_2:77886927-77886946 None:intergenic 30.0%
GAAACAATGGAAAATGTGTA+GGG - chr7_2:77886927-77886946 Msa1078880:intron 30.0%
TCATCTGTGTCTTCTAAATA+AGG + chr7_2:77887010-77887029 None:intergenic 30.0%
AAAAACATGCTGAAGAAGAT+TGG - chr7_2:77887052-77887071 Msa1078880:intron 30.0%
! GGATTTGATGACAATAAAAC+AGG + chr7_2:77887262-77887281 None:intergenic 30.0%
! TATTATAACGAGGGGCATAT+TGG + chr7_2:77884913-77884932 None:intergenic 35.0%
TACTTGACATTTAACCCACT+TGG - chr7_2:77885004-77885023 Msa1078880:CDS 35.0%
ACTTGACATTTAACCCACTT+GGG - chr7_2:77885005-77885024 Msa1078880:CDS 35.0%
CAAATATAAGCAAATGGCAC+CGG + chr7_2:77885099-77885118 None:intergenic 35.0%
! GCACTCTTTTGCTAATAATG+TGG - chr7_2:77885194-77885213 Msa1078880:CDS 35.0%
!!! TTTTCTGGCTTTAGAAGAAG+CGG - chr7_2:77885460-77885479 Msa1078880:CDS 35.0%
ATGGAAGACAAAAGTTCAAG+AGG - chr7_2:77885572-77885591 Msa1078880:CDS 35.0%
TAGTGAAGCTATCTCTGTTA+TGG - chr7_2:77885917-77885936 Msa1078880:CDS 35.0%
!! TACTTCTAAAGCTCGTGATT+CGG + chr7_2:77885979-77885998 None:intergenic 35.0%
!! TCACGAGCTTTAGAAGTAAT+TGG - chr7_2:77885981-77886000 Msa1078880:CDS 35.0%
TGGCAAAATGCAAATGCAAT+TGG - chr7_2:77886001-77886020 Msa1078880:CDS 35.0%
GGAAACAGTAAATAAGACAG+TGG - chr7_2:77886022-77886041 Msa1078880:CDS 35.0%
!! TTGCTTTTATACCATCCGAT+TGG + chr7_2:77886055-77886074 None:intergenic 35.0%
TTGTTCCAACTCAAAAGCTA+AGG + chr7_2:77886093-77886112 None:intergenic 35.0%
! ACTGATTCAACCAATGGAAA+GGG - chr7_2:77886161-77886180 Msa1078880:CDS 35.0%
CAGGAAAATGAGGAGATAAA+TGG - chr7_2:77886191-77886210 Msa1078880:CDS 35.0%
TTCCTCTTGGTATCTTATCT+CGG + chr7_2:77886282-77886301 None:intergenic 35.0%
CTGAATTATACGAGGAATTG+AGG - chr7_2:77886381-77886400 Msa1078880:CDS 35.0%
! ATTGAGATTCCTTTTCCATC+AGG + chr7_2:77886442-77886461 None:intergenic 35.0%
ATCTCAATTGCTGAGTTTGT+CGG - chr7_2:77886454-77886473 Msa1078880:intron 35.0%
!! AGATCGCTTTTCATTGATAC+TGG + chr7_2:77886501-77886520 None:intergenic 35.0%
TGCTGCAGAACTCAAAAAAA+TGG - chr7_2:77886541-77886560 Msa1078880:intron 35.0%
AGAAAACAGTATCCTCAAGA+TGG - chr7_2:77886631-77886650 Msa1078880:intron 35.0%
TATCCTCAAGATGGAGATAA+AGG - chr7_2:77886640-77886659 Msa1078880:intron 35.0%
GCAGAATAAAATCACTGAAG+AGG - chr7_2:77886670-77886689 Msa1078880:intron 35.0%
! TAGCTATGTAATGGAAGAAG+CGG - chr7_2:77886748-77886767 Msa1078880:intron 35.0%
GGATAAAAGTAACAGAAGAG+TGG - chr7_2:77886769-77886788 Msa1078880:intron 35.0%
GGAAACAATGGAAAATGTGT+AGG - chr7_2:77886926-77886945 Msa1078880:intron 35.0%
GGAAAATGTGTAGGGAAAAA+CGG - chr7_2:77886935-77886954 Msa1078880:intron 35.0%
TGTTAGGTATTACTAGTGTC+TGG - chr7_2:77887166-77887185 Msa1078880:CDS 35.0%
ACAGCTTGATTCAAGAAAGT+TGG + chr7_2:77887194-77887213 None:intergenic 35.0%
AATACAGTAGGGTCCTATAA+CGG + chr7_2:77887221-77887240 None:intergenic 35.0%
!! GATTTCCTTTGGGACATTTC+TGG + chr7_2:77884621-77884640 None:intergenic 40.0%
TGTAGCAGGTGATTTCCTTT+GGG + chr7_2:77884631-77884650 None:intergenic 40.0%
TTGTAGCAGGTGATTTCCTT+TGG + chr7_2:77884632-77884651 None:intergenic 40.0%
!! ACCAAACTCTGGTTCTAACT+CGG - chr7_2:77884680-77884699 Msa1078880:three_prime_UTR 40.0%
GGTATCTTTCTTATGGGGTT+TGG + chr7_2:77884717-77884736 None:intergenic 40.0%
! ACTTTCGGACTCATGTCTTT+TGG + chr7_2:77884738-77884757 None:intergenic 40.0%
AACCTGCGTTCGTTTACTTT+CGG + chr7_2:77884753-77884772 None:intergenic 40.0%
ATCACACAGTCCAATATCTG+AGG - chr7_2:77884773-77884792 Msa1078880:three_prime_UTR 40.0%
! GGTTAGTTAGACTTGCCTTA+TGG - chr7_2:77885220-77885239 Msa1078880:CDS 40.0%
!! AGAAGATCTGAAGAGTGCTA+AGG - chr7_2:77885527-77885546 Msa1078880:CDS 40.0%
AACTTAACTCATCGGAGTCA+TGG - chr7_2:77885553-77885572 Msa1078880:CDS 40.0%
GAAGACAAAAGTTCAAGAGG+AGG - chr7_2:77885575-77885594 Msa1078880:CDS 40.0%
! TTCTTCCAGCTCTTTTGACA+GGG + chr7_2:77885628-77885647 None:intergenic 40.0%
! ATTCTTCCAGCTCTTTTGAC+AGG + chr7_2:77885629-77885648 None:intergenic 40.0%
! AGAATCCCGTCAACAGTTTT+CGG - chr7_2:77885644-77885663 Msa1078880:CDS 40.0%
AAAGGTCCGAAAACTGTTGA+CGG + chr7_2:77885653-77885672 None:intergenic 40.0%
TTCTTGAAGTCGTGCTTCTT+CGG + chr7_2:77885682-77885701 None:intergenic 40.0%
!!! AATCCATTGAGTGCTGCTTT+TGG + chr7_2:77885761-77885780 None:intergenic 40.0%
!! CAAGTCCTTAGCTTTTGAGT+TGG - chr7_2:77886085-77886104 Msa1078880:CDS 40.0%
ATCTCAAGCAAAATCCTTGG+AGG - chr7_2:77886118-77886137 Msa1078880:CDS 40.0%
!! CTTGACACTGATTCAACCAA+TGG - chr7_2:77886155-77886174 Msa1078880:CDS 40.0%
!! CACTGATTCAACCAATGGAA+AGG - chr7_2:77886160-77886179 Msa1078880:CDS 40.0%
CAACTGCTCTACTTCAGATT+TGG + chr7_2:77886240-77886259 None:intergenic 40.0%
AGAGCAGTTGAAATCTGCAT+TGG - chr7_2:77886250-77886269 Msa1078880:CDS 40.0%
TTCTAATCTGCAATGTGCTC+TGG + chr7_2:77886310-77886329 None:intergenic 40.0%
!! TAGAAGTGCTTACGAACAAC+TGG - chr7_2:77886325-77886344 Msa1078880:CDS 40.0%
GAATTGAGGAAAGCTATAGC+TGG - chr7_2:77886395-77886414 Msa1078880:CDS 40.0%
AAAAGCAAGCCTGATGGAAA+AGG - chr7_2:77886430-77886449 Msa1078880:CDS 40.0%
ATGAAAAGCGATCTACTGAC+AGG - chr7_2:77886507-77886526 Msa1078880:intron 40.0%
TGAAAAGCGATCTACTGACA+GGG - chr7_2:77886508-77886527 Msa1078880:intron 40.0%
ACTCCTTTATCTCCATCTTG+AGG + chr7_2:77886646-77886665 None:intergenic 40.0%
CAAGATGGAGATAAAGGAGT+TGG - chr7_2:77886646-77886665 Msa1078880:intron 40.0%
TGAAAGTTCAGTCTGATCAG+TGG - chr7_2:77886861-77886880 Msa1078880:intron 40.0%
GCATCTATACTTTCTACCAC+CGG - chr7_2:77886905-77886924 Msa1078880:intron 40.0%
! ACATTTTCCATTGTTTCCGG+TGG + chr7_2:77886924-77886943 None:intergenic 40.0%
!! TGAAGAAGATTGGAGTGTTG+TGG - chr7_2:77887062-77887081 Msa1078880:intron 40.0%
TCAAGCTGTTCAACCGTTAT+AGG - chr7_2:77887205-77887224 Msa1078880:CDS 40.0%
!! TTGGGACATTTCTGGAGCAT+TGG + chr7_2:77884613-77884632 None:intergenic 45.0%
ATGCTCCAGAAATGTCCCAA+AGG - chr7_2:77884613-77884632 Msa1078880:three_prime_UTR 45.0%
!! CAGAGTTTGGTGTCTTCAAC+TGG + chr7_2:77884671-77884690 None:intergenic 45.0%
CAGTTGAAGACACCAAACTC+TGG - chr7_2:77884669-77884688 Msa1078880:three_prime_UTR 45.0%
!! CTTTCTTATGGGGTTTGGTG+AGG + chr7_2:77884712-77884731 None:intergenic 45.0%
GACATTTAACCCACTTGGGT+TGG - chr7_2:77885009-77885028 Msa1078880:CDS 45.0%
!! TTAGAAGAAGCGGACTAGCA+AGG - chr7_2:77885470-77885489 Msa1078880:CDS 45.0%
GACTAGCAAGGTTCAGGAAT+TGG - chr7_2:77885482-77885501 Msa1078880:CDS 45.0%
AAGGTCCGAAAACTGTTGAC+GGG + chr7_2:77885652-77885671 None:intergenic 45.0%
TGCATGGCAATCTGAACTTG+AGG - chr7_2:77885731-77885750 Msa1078880:CDS 45.0%
TGTCCAAAAGCAGCACTCAA+TGG - chr7_2:77885755-77885774 Msa1078880:CDS 45.0%
! CTCAATGGATTCATCTGCTC+TGG - chr7_2:77885770-77885789 Msa1078880:CDS 45.0%
GTCTGATCATGCTCAGATTC+AGG - chr7_2:77885878-77885897 Msa1078880:CDS 45.0%
ATGCTCAGATTCAGGACTTG+AGG - chr7_2:77885886-77885905 Msa1078880:CDS 45.0%
TCAGATTCAGGACTTGAGGA+TGG - chr7_2:77885890-77885909 Msa1078880:CDS 45.0%
AATCCTTGGAGGAACTTGTG+AGG - chr7_2:77886129-77886148 Msa1078880:CDS 45.0%
TTTCCTCACAAGTTCCTCCA+AGG + chr7_2:77886135-77886154 None:intergenic 45.0%
CTGAGAAAGTCCCTTTCCAT+TGG + chr7_2:77886174-77886193 None:intergenic 45.0%
CAATGGAAAGGGACTTTCTC+AGG - chr7_2:77886172-77886191 Msa1078880:CDS 45.0%
GGGACTTTCTCAGGAAAATG+AGG - chr7_2:77886181-77886200 Msa1078880:CDS 45.0%
AGATTTGGCAGAGATAAGCG+CGG + chr7_2:77886225-77886244 None:intergenic 45.0%
TGCCGAGATAAGATACCAAG+AGG - chr7_2:77886277-77886296 Msa1078880:CDS 45.0%
! TGCTCTGGATGTATTCCTCT+TGG + chr7_2:77886295-77886314 None:intergenic 45.0%
ATCAGAATCCAGTGAGAGAG+AGG - chr7_2:77886358-77886377 Msa1078880:CDS 45.0%
TAATTCAGCCTCTCTCTCAC+TGG + chr7_2:77886369-77886388 None:intergenic 45.0%
GAGAGAGGCTGAATTATACG+AGG - chr7_2:77886373-77886392 Msa1078880:CDS 45.0%
AGAGCTAAAAGCAAGCCTGA+TGG - chr7_2:77886424-77886443 Msa1078880:CDS 45.0%
TCAATTGCTGAGTTTGTCGG+CGG - chr7_2:77886457-77886476 Msa1078880:intron 45.0%
TGGATACTGATGTTGCAGAG+TGG - chr7_2:77886561-77886580 Msa1078880:intron 45.0%
TTGAGTCGGTTGAAACAGCA+AGG - chr7_2:77886696-77886715 Msa1078880:intron 45.0%
TGAGTCGGTTGAAACAGCAA+GGG - chr7_2:77886697-77886716 Msa1078880:intron 45.0%
TCAGGCTGCAAATTCAGAGT+TGG - chr7_2:77886820-77886839 Msa1078880:intron 45.0%
CAGAGTTGGAAGCCGAATTA+AGG - chr7_2:77886834-77886853 Msa1078880:intron 45.0%
TGATCAGTGGAGAAAAGCAG+CGG - chr7_2:77886874-77886893 Msa1078880:intron 45.0%
CTTTCTACCACCGGAAACAA+TGG - chr7_2:77886914-77886933 Msa1078880:intron 45.0%
!! AGAAGATTGGAGTGTTGTGG+AGG - chr7_2:77887065-77887084 Msa1078880:intron 45.0%
GCCGAGTTAGAACCAGAGTT+TGG + chr7_2:77884684-77884703 None:intergenic 50.0%
!! TCTTATGGGGTTTGGTGAGG+AGG + chr7_2:77884709-77884728 None:intergenic 50.0%
GTCCGAAAGTAAACGAACGC+AGG - chr7_2:77884748-77884767 Msa1078880:three_prime_UTR 50.0%
!! GTGGTATTGGCTTGGGTCTT+GGG - chr7_2:77885036-77885055 Msa1078880:CDS 50.0%
GAATCGAACCTGAGACCTTG+CGG + chr7_2:77885073-77885092 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCTC+CGG - chr7_2:77885077-77885096 Msa1078880:CDS 50.0%
CTTGCCTTATGGAGCTATCG+CGG - chr7_2:77885231-77885250 Msa1078880:CDS 50.0%
TTAGCCGCGATAGCTCCATA+AGG + chr7_2:77885238-77885257 None:intergenic 50.0%
ACTGTCCCTGTCAAAAGAGC+TGG - chr7_2:77885620-77885639 Msa1078880:CDS 50.0%
AAGTCGTGCTTCTTCGGAAG+CGG + chr7_2:77885676-77885695 None:intergenic 50.0%
GACAGTGGAGACACTCCAAT+CGG - chr7_2:77886037-77886056 Msa1078880:CDS 50.0%
AGTTTGTCGGCGGAGAATGA+GGG - chr7_2:77886467-77886486 Msa1078880:intron 50.0%
CACTGAAGAGGCTGTTGAGT+CGG - chr7_2:77886682-77886701 Msa1078880:intron 50.0%
CTGAGCAGCATCTAGCTGTT+CGG + chr7_2:77886804-77886823 None:intergenic 50.0%
GCAGTTCGAGGAGTTGTAGC+AGG + chr7_2:77884645-77884664 None:intergenic 55.0%
TTCAACTGGCGAGCAGTTCG+AGG + chr7_2:77884657-77884676 None:intergenic 55.0%
!! TATGGGGTTTGGTGAGGAGG+AGG + chr7_2:77884706-77884725 None:intergenic 55.0%
!! TTAACCCACTTGGGTTGGCC+TGG - chr7_2:77885014-77885033 Msa1078880:CDS 55.0%
!! TTGGGTTGGCCTGGTGGTAT+TGG - chr7_2:77885023-77885042 Msa1078880:CDS 55.0%
!! TTGGCCTGGTGGTATTGGCT+TGG - chr7_2:77885028-77885047 Msa1078880:CDS 55.0%
!! TGGCCTGGTGGTATTGGCTT+GGG - chr7_2:77885029-77885048 Msa1078880:CDS 55.0%
AGACCCAAGCCAATACCACC+AGG + chr7_2:77885035-77885054 None:intergenic 55.0%
!! GGTGGTATTGGCTTGGGTCT+TGG - chr7_2:77885035-77885054 Msa1078880:CDS 55.0%
!! GAAGCGGACTAGCAAGGTTC+AGG - chr7_2:77885476-77885495 Msa1078880:CDS 55.0%
GTGCTTCTTCGGAAGCGGAA+AGG + chr7_2:77885671-77885690 None:intergenic 55.0%
CTCAGGATCGAGATCGTGCA+TGG - chr7_2:77885715-77885734 Msa1078880:CDS 55.0%
GTGGAGACACTCCAATCGGA+TGG - chr7_2:77886041-77886060 Msa1078880:CDS 55.0%
GAGTTTGTCGGCGGAGAATG+AGG - chr7_2:77886466-77886485 Msa1078880:intron 55.0%
GTTTGTCGGCGGAGAATGAG+GGG - chr7_2:77886468-77886487 Msa1078880:intron 55.0%
AACAGCAAGGGCTGCAGAGA+AGG - chr7_2:77886709-77886728 Msa1078880:intron 55.0%
CGAACAGCTAGATGCTGCTC+AGG - chr7_2:77886802-77886821 Msa1078880:intron 55.0%
TCAGTGGAGAAAAGCAGCGG+AGG - chr7_2:77886877-77886896 Msa1078880:intron 55.0%
ACCACCAGGCCAACCCAAGT+GGG + chr7_2:77885021-77885040 None:intergenic 60.0%
TACCACCAGGCCAACCCAAG+TGG + chr7_2:77885022-77885041 None:intergenic 60.0%
TCGAACCTGAGACCTTGCGG+AGG + chr7_2:77885070-77885089 None:intergenic 60.0%
!! ACCCACTTGGGTTGGCCTGG+TGG - chr7_2:77885017-77885036 Msa1078880:CDS 65.0%
! TGGGAGTGTGCTCCTCCGCA+AGG - chr7_2:77885055-77885074 Msa1078880:CDS 65.0%
GTGCTCCTCCGCAAGGTCTC+AGG - chr7_2:77885062-77885081 Msa1078880:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 77884597 77887335 77884597 ID=Msa1078880;Name=Msa1078880
chr7_2 mRNA 77884597 77887335 77884597 ID=Msa1078880-mRNA-1;Parent=Msa1078880;Name=Msa1078880-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|1|0.5|1|1|1|2|233|608
chr7_2 exon 77884597 77886458 77884597 ID=Msa1078880-mRNA-1:exon:19274;Parent=Msa1078880-mRNA-1
chr7_2 exon 77887138 77887335 77887138 ID=Msa1078880-mRNA-1:exon:19273;Parent=Msa1078880-mRNA-1
chr7_2 CDS 77887138 77887335 77887138 ID=Msa1078880-mRNA-1:cds;Parent=Msa1078880-mRNA-1
chr7_2 CDS 77884830 77886458 77884830 ID=Msa1078880-mRNA-1:cds;Parent=Msa1078880-mRNA-1
chr7_2 three_prime_UTR 77884597 77884829 77884597 ID=Msa1078880-mRNA-1:three_prime_utr;Parent=Msa1078880-mRNA-1
Gene Sequence

>Msa1078880

ATGGCTGGCAGATCCAATGCTCCAGAAATGTCCCAAAGGAAATCACCTGCTACAACTCCTCGAACTGCTCGCCAGTTGAAGACACCAAACTCTGGTTCTAACTCGGCCTCCTCCTCACCAAACCCCATAAGAAAGATACCAAAAGACATGAGTCCGAAAGTAAACGAACGCAGGTTATCACACAGTCCAATATCTGAGAAGAAGCGGACTAGCAAGGTTCAGGAATTGGAATCACAGATTGCTAAGCTTCAAGAAGATCTGAAGAGTGCTAAGGATCAACTTAACTCATCGGAGTCATGGAAGACAAAAGTTCAAGAGGAGGCTGAAGAAGCAAAGAAGCAGATACTGTCCCTGTCAAAAGAGCTGGAAGAATCCCGTCAACAGTTTTCGGACCTTTCCGCTTCCGAAGAAGCACGACTTCAAGAACTCAGTAAAATATCTCAGGATCGAGATCGTGCATGGCAATCTGAACTTGAGGCTGTCCAAAAGCAGCACTCAATGGATTCATCTGCTCTGGTGTCTGCCATGAATGAAATACATAAATTGAAAAGTCAGCTTGAAAGAGCAAGCGAGTCCGAATTTTCTCAGACTAACAACGCAGAGTCTGATCATGCTCAGATTCAGGACTTGAGGATGGATCTTAGTGAAGCTATCTCTGTTATGGAAAAACTAAGAAATGAGGCAAGTAATTGCAAAGAATCCGAATCACGAGCTTTAGAAGTAATTGGCAAAATGCAAATGCAATTGGAAACAGTAAATAAGACAGTGGAGACACTCCAATCGGATGGTATAAAAGCAACTGAAGCTTACAAGTCCTTAGCTTTTGAGTTGGAACAATCAAAATCTCAAGCAAAATCCTTGGAGGAACTTGTGAGGAAACTTGACACTGATTCAACCAATGGAAAGGGACTTTCTCAGGAAAATGAGGAGATAAATGGGCTCAAAGCCGCGCTTATCTCTGCCAAATCTGAAGTAGAGCAGTTGAAATCTGCATTGGATGTTGCCGAGATAAGATACCAAGAGGAATACATCCAGAGCACATTGCAGATTAGAAGTGCTTACGAACAACTGGAACGTACAAAATCAGAATCCAGTGAGAGAGAGGCTGAATTATACGAGGAATTGAGGAAAGCTATAGCTGGTATTGAAGAGCTAAAAGCAAGCCTGATGGAAAAGGAATCTCAATTGCTGAGTTTGTCGGCGGAGAATGAGGGGTGCAATTCCAGTATCAATGAAAAGCGATCTACTGACAGGGAATCTGAACTTGCTGCAGAACTCAAAAAAATGGATACTGATGTTGCAGAGTGGAAAGCAAAATTATTAGATAGAGAGTCCGAGTTGAAAAAAGTAACTGAAGAAAACAGTATCCTCAAGATGGAGATAAAGGAGTTGGAGCAGAATAAAATCACTGAAGAGGCTGTTGAGTCGGTTGAAACAGCAAGGGCTGCAGAGAAGGAAGCTTTGACAAAACTTAGCTATGTAATGGAAGAAGCGGATAAAAGTAACAGAAGAGTGGCTCGTGTAACCGAACAGCTAGATGCTGCTCAGGCTGCAAATTCAGAGTTGGAAGCCGAATTAAGGAGATTGAAAGTTCAGTCTGATCAGTGGAGAAAAGCAGCGGAGGCAGCTGCATCTATACTTTCTACCACCGGAAACAATGGAAAATGTGTAGGGAAAAACGGCGCACTTGACAGTAGTTTCAACTCTATTTCAAGCAAGACAATGAATTCACCTTATTTAGAAGACACAGATGATGAGTCTCCAAAGAAGAAAAACAAAAACATGCTGAAGAAGATTGGAGTGTTGTGGAGGAAGAATCATCATTAA

Protein sequence

>Msa1078880

MAGRSNAPEMSQRKSPATTPRTARQLKTPNSGSNSASSSPNPIRKIPKDMSPKVNERRLSHSPISEKKRTSKVQELESQIAKLQEDLKSAKDQLNSSESWKTKVQEEAEEAKKQILSLSKELEESRQQFSDLSASEEARLQELSKISQDRDRAWQSELEAVQKQHSMDSSALVSAMNEIHKLKSQLERASESEFSQTNNAESDHAQIQDLRMDLSEAISVMEKLRNEASNCKESESRALEVIGKMQMQLETVNKTVETLQSDGIKATEAYKSLAFELEQSKSQAKSLEELVRKLDTDSTNGKGLSQENEEINGLKAALISAKSEVEQLKSALDVAEIRYQEEYIQSTLQIRSAYEQLERTKSESSEREAELYEELRKAIAGIEELKASLMEKESQLLSLSAENEGCNSSINEKRSTDRESELAAELKKMDTDVAEWKAKLLDRESELKKVTEENSILKMEIKELEQNKITEEAVESVETARAAEKEALTKLSYVMEEADKSNRRVARVTEQLDAAQAANSELEAELRRLKVQSDQWRKAAEAAASILSTTGNNGKCVGKNGALDSSFNSISSKTMNSPYLEDTDDESPKKKNKNMLKKIGVLWRKNHH*