AlfalfaGEDB | Msa1078970

M. sativa cultivar zhongmu-4 / Msa1078970

KEGG: K10352
GO: GO:0000226 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009507 GO:0009536 GO:0009664 GO:0009987 GO:0015630 GO:0016043 GO:0030865 GO:0031122 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1078970	XP_003625583.1	94.884	606	30	1	3	608	6	610	0.0	1052

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1078970	sp\|Q9ZQC5\|ICR2_ARATH	47.930	628	251	15	4	607	7	582	3.54e-153	456

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1078970	G7L1R0	94.884	606	30	1	3	608	6	610	0.0	1052

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003080	Msa1078970	0.839345	1.675596e-57	-8.615850e-47
Msa0005020	Msa1078970	0.828800	7.349623e-55	-8.615850e-47
Msa0014770	Msa1078970	0.808696	2.728496e-50	-8.615850e-47
Msa0015150	Msa1078970	0.814796	1.283665e-51	-8.615850e-47
Msa0015570	Msa1078970	0.858776	6.532581e-63	-8.615850e-47
Msa0016040	Msa1078970	0.861002	1.393089e-63	-8.615850e-47
Msa0018920	Msa1078970	0.817201	3.727889e-52	-8.615850e-47
Msa0020540	Msa1078970	0.867137	1.707595e-65	-8.615850e-47
Msa0025160	Msa1078970	0.843858	1.082169e-58	-8.615850e-47
Msa0025580	Msa1078970	0.863269	2.808819e-64	-8.615850e-47

Showing 1 to 10 of 581 entries

Previous1 2 3 4 5…59Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1078970	MtrunA17_Chr7g0263701	94.884	606	30	1	3	608	6	610	0.0	1052
Msa1078970	MtrunA17_Chr1g0181611	61.165	618	188	8	3	608	9	586	0.0	630
Msa1078970	MtrunA17_Chr4g0030031	46.021	578	283	5	48	605	49	617	1.78e-142	427
Msa1078970	MtrunA17_Chr2g0326021	41.232	422	218	9	192	605	133	532	1.09e-69	235
Msa1078970	MtrunA17_Chr5g0395261	26.590	346	181	11	1	302	13	329	1.96e-12	70.5
Msa1078970	MtrunA17_Chr4g0039981	27.215	316	197	12	1	287	1	312	2.29e-11	67.0

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1078970	AT2G37080.3	48.083	626	251	14	4	607	7	580	2.53e-156	461
Msa1078970	AT2G37080.1	47.930	628	251	15	4	607	7	582	3.60e-154	456
Msa1078970	AT2G37080.2	47.930	628	251	15	4	607	7	582	3.60e-154	456
Msa1078970	AT5G60210.2	38.953	611	310	10	3	605	6	561	9.04e-105	328
Msa1078970	AT5G60210.4	38.953	611	310	10	3	605	6	561	9.04e-105	328
Msa1078970	AT5G60210.1	38.953	611	310	10	3	605	6	561	9.04e-105	328
Msa1078970	AT5G60210.6	38.953	611	310	10	3	605	6	561	9.04e-105	328
Msa1078970	AT5G60210.5	38.662	613	313	10	1	605	28	585	4.69e-104	327
Msa1078970	AT5G60210.3	38.662	613	313	10	1	605	28	585	4.69e-104	327
Msa1078970	AT3G53350.8	37.571	354	173	15	1	333	15	341	1.11e-41	155

Showing 1 to 10 of 30 entries

Previous1 2 3Next

Find 125 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAAGCCTGATGGAAA+AGG	0.487342	7_2:+78006496	Msa1078970:CDS
AAAATCTCAAGCAAAATCCT+TGG	0.473358	7_2:+78006181	Msa1078970:CDS
AAAGGTCCGAAAACTGTTGA+CGG	0.573588	7_2:-78005716	None:intergenic
AACCTGCGTTCGTTTACTTT+CGG	0.363041	7_2:-78004816	None:intergenic
AACTTAACTCATCGGAGTCA+TGG	0.524619	7_2:+78005619	Msa1078970:CDS
AACTTTCAATCTCCTTAATT+CGG	0.325865	7_2:-78006912	None:intergenic
AAGGTCCGAAAACTGTTGAC+GGG	0.568934	7_2:-78005715	None:intergenic
AAGTCGTGCTTCTTCGGAAG+CGG	0.510056	7_2:-78005739	None:intergenic
AATACAGTAGGGTCCTATAA+CGG	0.593252	7_2:-78007284	None:intergenic
AATCCATTGAGTGCTGCTTT+TGG	0.335138	7_2:-78005824	None:intergenic

Showing 1 to 10 of 125 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTTTCAAATACCTCAGATAT+TGG	-	chr7_2:78004852-78004871	None:intergenic	30.0%
TAAGGATCAACTTAACTCAT+CGG	+	chr7_2:78005611-78005630	Msa1078970:CDS	30.0%
AGAACTCAGTAAAATATCTC+AGG	+	chr7_2:78005764-78005783	Msa1078970:CDS	30.0%
AAAATCTCAAGCAAAATCCT+TGG	+	chr7_2:78006181-78006200	Msa1078970:CDS	30.0%
AGGAAAATGAGGAGATAAAT+GGG	+	chr7_2:78006258-78006277	Msa1078970:CDS	30.0%
GACAAAACTTAGCTATGTAA+TGG	+	chr7_2:78006805-78006824	Msa1078970:CDS	30.0%
GAAACAATGGAAAATGTGTA+GGG	+	chr7_2:78006993-78007012	Msa1078970:CDS	30.0%
TCATCTGTGTCTTCTAAATA+AGG	-	chr7_2:78007076-78007095	None:intergenic	30.0%
AAAAACATGCTGAAGAAGAT+TGG	+	chr7_2:78007118-78007137	Msa1078970:CDS	30.0%
TACTTGACATTTAACCCACT+TGG	+	chr7_2:78005070-78005089	Msa1078970:intron	35.0%

Showing 1 to 10 of 191 entries

Previous1 2 3 4 5…20Next

Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	78004663	78007401	78004663	ID=Msa1078970;Name=Msa1078970
chr7_2	mRNA	78004663	78007401	78004663	ID=Msa1078970-mRNA-1;Parent=Msa1078970;Name=Msa1078970-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0\|1\|0.5\|1\|1\|1\|2\|233\|608
chr7_2	exon	78004663	78004860	78004663	ID=Msa1078970-mRNA-1:exon:19355;Parent=Msa1078970-mRNA-1
chr7_2	exon	78005540	78007401	78005540	ID=Msa1078970-mRNA-1:exon:19356;Parent=Msa1078970-mRNA-1
chr7_2	CDS	78004663	78004860	78004663	ID=Msa1078970-mRNA-1:cds;Parent=Msa1078970-mRNA-1
chr7_2	CDS	78005540	78007168	78005540	ID=Msa1078970-mRNA-1:cds;Parent=Msa1078970-mRNA-1
chr7_2	three_prime_UTR	78007169	78007401	78007169	ID=Msa1078970-mRNA-1:three_prime_utr;Parent=Msa1078970-mRNA-1

Gene Sequence

>Msa1078970

ATGGCTGGCAGATCCAATGCTCCAGAAATGTCCCAAAGGAAATCACCTGCTACAACTCCTCGAACTGCTCGCCAGTTGAAGACACCAAACTCTGGTTCTAACTCGGCCTCCTCCTCACCAAACCCCATAAGAAAGATACCAAAAGACATGAGTCCGAAAGTAAACGAACGCAGGTTATCACACAGTCCAATATCTGAGAAGAAGCGGACTAGCAAGGTTCAGGAATTGGAATCACAGATTGCTAAGCTTCAAGAAGATCTGAAGAGTGCTAAGGATCAACTTAACTCATCGGAGTCATGGAAGACAAAAGTTCAAGAGGAGGCTGAAGAAGCAAAGAAGCAGATACTGTCCCTGTCAAAAGAGCTGGAAGAATCCCGTCAACAGTTTTCGGACCTTTCCGCTTCCGAAGAAGCACGACTTCAAGAACTCAGTAAAATATCTCAGGATCGAGATCGTGCATGGCAATCTGAACTTGAGGCTGTCCAAAAGCAGCACTCAATGGATTCATCTGCTCTGGTGTCTGCCATGAATGAAATACATAAATTGAAAAGTCAGCTTGAAAGAGCAAGCGAGTCCGAATTTTCTCAGACTAACAACGCAGAGTCTGATCATGCTCAGATTCAGGACTTGAGGATGGATCTTAGTGAAGCTATCTCTGTTATGGAAAAACTAAGAAATGAGGCAAGTAATTGCAAAGAATCCGAATCACGAGCTTTAGAAGTAATTGGCAAAATGCAAATGCAATTGGAAACAGTAAATAAGACAGTGGAGACACTCCAATCGGATGGTATAAAAGCAACTGAAGCTTACAAGTCCTTAGCTTTTGAGTTGGAACAATCAAAATCTCAAGCAAAATCCTTGGAGGAACTTGTGAGGAAACTTGACACTGATTCAACCAATGGAAAGGGACTTTCTCAGGAAAATGAGGAGATAAATGGGCTCAAAGCCGCGCTTATCTCTGCCAAATCTGAAGTAGAGCAGTTGAAATCTGCATTGGATGTTGCCGAGATAAGATACCAAGAGGAATACATCCAGAGCACATTGCAGATTAGAAGTGCTTACGAACAACTGGAACGTACAAAATCAGAATCCAGTGAGAGAGAGGCTGAATTATACGAGGAATTGAGGAAAGCTATAGCTGGTATTGAAGAGCTAAAAGCAAGCCTGATGGAAAAGGAATCTCAATTGCTGAGTTTGTCGGCGGAGAATGAGGGGTGCAATTCCAGTATCAATGAAAAGCGATCTACTGACAGGGAATCTGAACTTGCTGCAGAACTCAAAAAAATGGATACTGATGTTGCAGAGTGGAAAGCAAAATTATTAGATAGAGAGTCCGAGTTGAAAAAAGTAACTGAAGAAAACAGTATCCTCAAGATGGAGATAAAGGAGTTGGAGCAGAATAAAATCACTGAAGAGGCTGTTGAGTCGGTTGAAACAGCAAGGGCTGCAGAGAAAGAAGCTTTGACAAAACTTAGCTATGTAATGGAAGAAGCGGATAAAAGTAACAGAAGAGTGGCTCGTGTAACCGAACAGCTAGATGCTGCTCAGGCTGCAAATTCAGAGTTGGAAGCCGAATTAAGGAGATTGAAAGTTCAGTCTGATCAGTGGAGAAAAGCAGCGGAGGCAGCTGCATCTATACTTTCTACCACCGGAAACAATGGAAAATGTGTAGGGAAAAACGGCGCACTTGACAGTAGTTTCAACTCTATTTCAAGCAAGACAATGAATTCACCTTATTTAGAAGACACAGATGATGAGTCTCCAAAGAAGAAAAACAAAAACATGCTGAAGAAGATTGGAGTGTTGTGGAGGAAGAATCATCATTAA

Protein sequence

>Msa1078970

MAGRSNAPEMSQRKSPATTPRTARQLKTPNSGSNSASSSPNPIRKIPKDMSPKVNERRLSHSPISEKKRTSKVQELESQIAKLQEDLKSAKDQLNSSESWKTKVQEEAEEAKKQILSLSKELEESRQQFSDLSASEEARLQELSKISQDRDRAWQSELEAVQKQHSMDSSALVSAMNEIHKLKSQLERASESEFSQTNNAESDHAQIQDLRMDLSEAISVMEKLRNEASNCKESESRALEVIGKMQMQLETVNKTVETLQSDGIKATEAYKSLAFELEQSKSQAKSLEELVRKLDTDSTNGKGLSQENEEINGLKAALISAKSEVEQLKSALDVAEIRYQEEYIQSTLQIRSAYEQLERTKSESSEREAELYEELRKAIAGIEELKASLMEKESQLLSLSAENEGCNSSINEKRSTDRESELAAELKKMDTDVAEWKAKLLDRESELKKVTEENSILKMEIKELEQNKITEEAVESVETARAAEKEALTKLSYVMEEADKSNRRVARVTEQLDAAQAANSELEAELRRLKVQSDQWRKAAEAAASILSTTGNNGKCVGKNGALDSSFNSISSKTMNSPYLEDTDDESPKKKNKNMLKKIGVLWRKNHH*