AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1078970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078970 MtrunA17_Chr7g0263701 94.884 606 30 1 3 608 6 610 0.0 1052
Msa1078970 MtrunA17_Chr1g0181611 61.165 618 188 8 3 608 9 586 0.0 630
Msa1078970 MtrunA17_Chr4g0030031 46.021 578 283 5 48 605 49 617 1.78e-142 427
Msa1078970 MtrunA17_Chr2g0326021 41.232 422 218 9 192 605 133 532 1.09e-69 235
Msa1078970 MtrunA17_Chr5g0395261 26.590 346 181 11 1 302 13 329 1.96e-12 70.5
Msa1078970 MtrunA17_Chr4g0039981 27.215 316 197 12 1 287 1 312 2.29e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078970 AT2G37080.3 48.083 626 251 14 4 607 7 580 2.53e-156 461
Msa1078970 AT2G37080.1 47.930 628 251 15 4 607 7 582 3.60e-154 456
Msa1078970 AT2G37080.2 47.930 628 251 15 4 607 7 582 3.60e-154 456
Msa1078970 AT5G60210.2 38.953 611 310 10 3 605 6 561 9.04e-105 328
Msa1078970 AT5G60210.4 38.953 611 310 10 3 605 6 561 9.04e-105 328
Msa1078970 AT5G60210.1 38.953 611 310 10 3 605 6 561 9.04e-105 328
Msa1078970 AT5G60210.6 38.953 611 310 10 3 605 6 561 9.04e-105 328
Msa1078970 AT5G60210.5 38.662 613 313 10 1 605 28 585 4.69e-104 327
Msa1078970 AT5G60210.3 38.662 613 313 10 1 605 28 585 4.69e-104 327
Msa1078970 AT3G53350.8 37.571 354 173 15 1 333 15 341 1.11e-41 155
Msa1078970 AT3G53350.8 35.955 356 106 11 258 607 165 404 1.33e-35 139
Msa1078970 AT3G53350.3 37.784 352 171 15 3 333 6 330 1.56e-41 155
Msa1078970 AT3G53350.3 36.415 357 103 12 258 607 154 393 7.13e-36 139
Msa1078970 AT3G53350.2 37.784 352 171 15 3 333 6 330 1.56e-41 155
Msa1078970 AT3G53350.2 36.415 357 103 12 258 607 154 393 7.13e-36 139
Msa1078970 AT3G53350.4 37.360 356 173 16 1 333 15 343 8.58e-40 150
Msa1078970 AT3G53350.4 32.773 476 183 15 142 607 58 406 8.86e-36 139
Msa1078970 AT3G53350.6 37.360 356 173 16 1 333 15 343 8.58e-40 150
Msa1078970 AT3G53350.6 32.773 476 183 15 142 607 58 406 8.86e-36 139
Msa1078970 AT3G53350.7 37.571 354 171 16 3 333 6 332 9.76e-40 150
Msa1078970 AT3G53350.7 32.704 477 182 15 142 607 47 395 2.63e-36 140
Msa1078970 AT3G53350.1 37.571 354 171 16 3 333 6 332 9.76e-40 150
Msa1078970 AT3G53350.1 32.704 477 182 15 142 607 47 395 2.63e-36 140
Msa1078970 AT3G53350.5 37.571 354 171 16 3 333 6 332 9.76e-40 150
Msa1078970 AT3G53350.5 32.704 477 182 15 142 607 47 395 2.63e-36 140
Msa1078970 AT3G53350.9 34.908 381 170 16 4 333 7 360 1.31e-35 139
Msa1078970 AT3G53350.9 35.955 356 106 11 258 607 184 423 3.23e-35 138
Msa1078970 AT1G78430.1 35.294 170 97 4 437 605 163 320 5.07e-16 80.1
Msa1078970 AT1G17140.1 35.028 177 95 7 437 605 176 340 1.38e-13 72.8
Msa1078970 AT1G17140.2 35.028 177 95 7 437 605 176 340 1.38e-13 72.8

Find 125 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTCCTTTGGGACATTTC+TGG 0.157878 7_2:-78004684 None:intergenic
CAGGAAAATGAGGAGATAAA+TGG 0.230127 7_2:+78006257 Msa1078970:CDS
TCACGAGCTTTAGAAGTAAT+TGG 0.259559 7_2:+78006047 Msa1078970:CDS
GTCTGATCATGCTCAGATTC+AGG 0.282526 7_2:+78005944 Msa1078970:CDS
TCATCTGTGTCTTCTAAATA+AGG 0.285675 7_2:-78007073 None:intergenic
CAGAGTTGGAAGCCGAATTA+AGG 0.288025 7_2:+78006900 Msa1078970:CDS
AGCAAGTAGTATCAAAATTA+TGG 0.289089 7_2:+78007350 Msa1078970:three_prime_UTR
CAATTTATGTATTTCATTCA+TGG 0.304232 7_2:-78005865 None:intergenic
GTTTCAAATACCTCAGATAT+TGG 0.308574 7_2:-78004849 None:intergenic
GGTATCTTTCTTATGGGGTT+TGG 0.312528 7_2:-78004780 None:intergenic
TTGTAGCAGGTGATTTCCTT+TGG 0.322465 7_2:-78004695 None:intergenic
AACTTTCAATCTCCTTAATT+CGG 0.325865 7_2:-78006912 None:intergenic
ACTTTCGGACTCATGTCTTT+TGG 0.331128 7_2:-78004801 None:intergenic
TCAAGCTGTTCAACCGTTAT+AGG 0.334380 7_2:+78007271 Msa1078970:three_prime_UTR
AATCCATTGAGTGCTGCTTT+TGG 0.335138 7_2:-78005824 None:intergenic
CAACTGCTCTACTTCAGATT+TGG 0.349820 7_2:-78006303 None:intergenic
GACTAGCAAGGTTCAGGAAT+TGG 0.351633 7_2:+78005548 Msa1078970:CDS
AACCTGCGTTCGTTTACTTT+CGG 0.363041 7_2:-78004816 None:intergenic
TGGATGTTGTTATTATTGTT+AGG 0.377779 7_2:+78007216 Msa1078970:three_prime_UTR
TAGTGAAGCTATCTCTGTTA+TGG 0.380107 7_2:+78005983 Msa1078970:CDS
TTCTTGAAGTCGTGCTTCTT+CGG 0.385930 7_2:-78005745 None:intergenic
TATCCTCAAGATGGAGATAA+AGG 0.393747 7_2:+78006706 Msa1078970:CDS
GAAGCGGACTAGCAAGGTTC+AGG 0.395117 7_2:+78005542 Msa1078970:CDS
CAGAGTTTGGTGTCTTCAAC+TGG 0.396120 7_2:-78004734 None:intergenic
ATTATGGATGAAAATGTGTT+TGG 0.399588 7_2:+78007366 Msa1078970:three_prime_UTR
TTCTAATCTGCAATGTGCTC+TGG 0.400148 7_2:-78006373 None:intergenic
TTGGGACATTTCTGGAGCAT+TGG 0.409864 7_2:-78004676 None:intergenic
TGGCAAAATGCAAATGCAAT+TGG 0.415697 7_2:+78006067 Msa1078970:CDS
GTTGTTAGTCTGAGAAAATT+CGG 0.416762 7_2:-78005916 None:intergenic
TGTAGCAGGTGATTTCCTTT+GGG 0.418456 7_2:-78004694 None:intergenic
TAGAAGTGCTTACGAACAAC+TGG 0.419369 7_2:+78006391 Msa1078970:CDS
CTGAGAAAGTCCCTTTCCAT+TGG 0.424088 7_2:-78006237 None:intergenic
GACAAAACTTAGCTATGTAA+TGG 0.430384 7_2:+78006805 Msa1078970:CDS
CTCAATGGATTCATCTGCTC+TGG 0.431947 7_2:+78005836 Msa1078970:CDS
TACTTCTAAAGCTCGTGATT+CGG 0.433669 7_2:-78006042 None:intergenic
TCTTATGGGGTTTGGTGAGG+AGG 0.433762 7_2:-78004772 None:intergenic
GCCGAGTTAGAACCAGAGTT+TGG 0.447004 7_2:-78004747 None:intergenic
CAATGGAAAGGGACTTTCTC+AGG 0.447323 7_2:+78006238 Msa1078970:CDS
TTCCTCTTGGTATCTTATCT+CGG 0.450936 7_2:-78006345 None:intergenic
TGTTAGGTATTACTAGTGTC+TGG 0.453787 7_2:+78007232 Msa1078970:three_prime_UTR
AGGAAAATGAGGAGATAAAT+GGG 0.455434 7_2:+78006258 Msa1078970:CDS
CGAACAGCTAGATGCTGCTC+AGG 0.462034 7_2:+78006868 Msa1078970:CDS
ATCTCAATTGCTGAGTTTGT+CGG 0.465945 7_2:+78006520 Msa1078970:CDS
TATGGGGTTTGGTGAGGAGG+AGG 0.467777 7_2:-78004769 None:intergenic
CTTTCTTATGGGGTTTGGTG+AGG 0.468528 7_2:-78004775 None:intergenic
GGATTTGATGACAATAAAAC+AGG 0.472389 7_2:-78007325 None:intergenic
ACAGCTTGATTCAAGAAAGT+TGG 0.472665 7_2:-78007257 None:intergenic
AAAATCTCAAGCAAAATCCT+TGG 0.473358 7_2:+78006181 Msa1078970:CDS
TGCTCTGGATGTATTCCTCT+TGG 0.476597 7_2:-78006358 None:intergenic
CTGAATTATACGAGGAATTG+AGG 0.480140 7_2:+78006447 Msa1078970:CDS
GAGTTTGTCGGCGGAGAATG+AGG 0.485321 7_2:+78006532 Msa1078970:CDS
AAAAGCAAGCCTGATGGAAA+AGG 0.487342 7_2:+78006496 Msa1078970:CDS
AGAACTCAGTAAAATATCTC+AGG 0.492404 7_2:+78005764 Msa1078970:CDS
CTGAGCAGCATCTAGCTGTT+CGG 0.497006 7_2:-78006867 None:intergenic
TATGCTAATTGGCTTATGGC+TGG 0.501671 7_2:+78004648 None:intergenic
CTTTCTACCACCGGAAACAA+TGG 0.502144 7_2:+78006980 Msa1078970:CDS
TAATTCAGCCTCTCTCTCAC+TGG 0.507829 7_2:-78006432 None:intergenic
AAGTCGTGCTTCTTCGGAAG+CGG 0.510056 7_2:-78005739 None:intergenic
ATGAAAAGCGATCTACTGAC+AGG 0.512449 7_2:+78006573 Msa1078970:CDS
TTCAACTGGCGAGCAGTTCG+AGG 0.516234 7_2:-78004720 None:intergenic
ATCTCAAGCAAAATCCTTGG+AGG 0.518596 7_2:+78006184 Msa1078970:CDS
CTTGACACTGATTCAACCAA+TGG 0.522965 7_2:+78006221 Msa1078970:CDS
AACTTAACTCATCGGAGTCA+TGG 0.524619 7_2:+78005619 Msa1078970:CDS
CAAGATGGAGATAAAGGAGT+TGG 0.532655 7_2:+78006712 Msa1078970:CDS
ACTGTCCCTGTCAAAAGAGC+TGG 0.533173 7_2:+78005686 Msa1078970:CDS
GCAGTTCGAGGAGTTGTAGC+AGG 0.533468 7_2:-78004708 None:intergenic
GGGACTTTCTCAGGAAAATG+AGG 0.534716 7_2:+78006247 Msa1078970:CDS
AGAAAACAGTATCCTCAAGA+TGG 0.537638 7_2:+78006697 Msa1078970:CDS
AGAGCAGTTGAAATCTGCAT+TGG 0.538094 7_2:+78006316 Msa1078970:CDS
TGTCCAAAAGCAGCACTCAA+TGG 0.543706 7_2:+78005821 Msa1078970:CDS
GACAGTGGAGACACTCCAAT+CGG 0.544738 7_2:+78006103 Msa1078970:CDS
CACTGAAGAGGCTGTTGAGT+CGG 0.545865 7_2:+78006748 Msa1078970:CDS
ATCAGAATCCAGTGAGAGAG+AGG 0.548200 7_2:+78006424 Msa1078970:CDS
ACTGATTCAACCAATGGAAA+GGG 0.548724 7_2:+78006227 Msa1078970:CDS
TTGTAGAAACAAAATACAGT+AGG 0.551756 7_2:-78007296 None:intergenic
GGAAACAATGGAAAATGTGT+AGG 0.557199 7_2:+78006992 Msa1078970:CDS
AGTTTGTCGGCGGAGAATGA+GGG 0.561099 7_2:+78006533 Msa1078970:CDS
CACTGATTCAACCAATGGAA+AGG 0.561480 7_2:+78006226 Msa1078970:CDS
ATGCTCAGATTCAGGACTTG+AGG 0.568384 7_2:+78005952 Msa1078970:CDS
AAGGTCCGAAAACTGTTGAC+GGG 0.568934 7_2:-78005715 None:intergenic
ATGGAAGACAAAAGTTCAAG+AGG 0.570660 7_2:+78005638 Msa1078970:CDS
GAAACAATGGAAAATGTGTA+GGG 0.570873 7_2:+78006993 Msa1078970:CDS
TTGTTCCAACTCAAAAGCTA+AGG 0.572666 7_2:-78006156 None:intergenic
AAAGGTCCGAAAACTGTTGA+CGG 0.573588 7_2:-78005716 None:intergenic
TGTAGAAACAAAATACAGTA+GGG 0.573798 7_2:-78007295 None:intergenic
ACCAAACTCTGGTTCTAACT+CGG 0.577387 7_2:+78004746 Msa1078970:CDS
ACTCCTTTATCTCCATCTTG+AGG 0.578972 7_2:-78006709 None:intergenic
GCAGAATAAAATCACTGAAG+AGG 0.581197 7_2:+78006736 Msa1078970:CDS
GAATTGAGGAAAGCTATAGC+TGG 0.584443 7_2:+78006461 Msa1078970:CDS
TTTCCTCACAAGTTCCTCCA+AGG 0.584609 7_2:-78006198 None:intergenic
CAGTTGAAGACACCAAACTC+TGG 0.589837 7_2:+78004735 Msa1078970:CDS
CTCAGGATCGAGATCGTGCA+TGG 0.590550 7_2:+78005781 Msa1078970:CDS
TCAGGCTGCAAATTCAGAGT+TGG 0.590572 7_2:+78006886 Msa1078970:CDS
AATACAGTAGGGTCCTATAA+CGG 0.593252 7_2:-78007284 None:intergenic
TTAGAAGAAGCGGACTAGCA+AGG 0.593878 7_2:+78005536 Msa1078970:intron
TAGCTATGTAATGGAAGAAG+CGG 0.596332 7_2:+78006814 Msa1078970:CDS
TTGAGTCGGTTGAAACAGCA+AGG 0.601134 7_2:+78006762 Msa1078970:CDS
AGAGCTAAAAGCAAGCCTGA+TGG 0.601156 7_2:+78006490 Msa1078970:CDS
GTGCTTCTTCGGAAGCGGAA+AGG 0.601435 7_2:-78005734 None:intergenic
AGAAGATCTGAAGAGTGCTA+AGG 0.601647 7_2:+78005593 Msa1078970:CDS
TAAGGATCAACTTAACTCAT+CGG 0.603512 7_2:+78005611 Msa1078970:CDS
GCATCTATACTTTCTACCAC+CGG 0.615034 7_2:+78006971 Msa1078970:CDS
TGCATGGCAATCTGAACTTG+AGG 0.624261 7_2:+78005797 Msa1078970:CDS
AGAAGATTGGAGTGTTGTGG+AGG 0.624386 7_2:+78007131 Msa1078970:CDS
GTTTGTCGGCGGAGAATGAG+GGG 0.630308 7_2:+78006534 Msa1078970:CDS
TGAAAGTTCAGTCTGATCAG+TGG 0.639619 7_2:+78006927 Msa1078970:CDS
TCAATTGCTGAGTTTGTCGG+CGG 0.644952 7_2:+78006523 Msa1078970:CDS
GTGGAGACACTCCAATCGGA+TGG 0.646462 7_2:+78006107 Msa1078970:CDS
TGATCAGTGGAGAAAAGCAG+CGG 0.646992 7_2:+78006940 Msa1078970:CDS
ATCACACAGTCCAATATCTG+AGG 0.647969 7_2:+78004839 Msa1078970:CDS
AATCCTTGGAGGAACTTGTG+AGG 0.648483 7_2:+78006195 Msa1078970:CDS
TCAGATTCAGGACTTGAGGA+TGG 0.651660 7_2:+78005956 Msa1078970:CDS
TCAGTGGAGAAAAGCAGCGG+AGG 0.652899 7_2:+78006943 Msa1078970:CDS
TGAAGAAGATTGGAGTGTTG+TGG 0.655720 7_2:+78007128 Msa1078970:CDS
GAAGACAAAAGTTCAAGAGG+AGG 0.660033 7_2:+78005641 Msa1078970:CDS
GGATAAAAGTAACAGAAGAG+TGG 0.662477 7_2:+78006835 Msa1078970:CDS
TGCCGAGATAAGATACCAAG+AGG 0.662730 7_2:+78006343 Msa1078970:CDS
ATGCTCCAGAAATGTCCCAA+AGG 0.664123 7_2:+78004679 Msa1078970:CDS
TGAAAAGCGATCTACTGACA+GGG 0.672889 7_2:+78006574 Msa1078970:CDS
GTCCGAAAGTAAACGAACGC+AGG 0.685794 7_2:+78004814 Msa1078970:CDS
GGAAACAGTAAATAAGACAG+TGG 0.686379 7_2:+78006088 Msa1078970:CDS
AGATTTGGCAGAGATAAGCG+CGG 0.695807 7_2:-78006288 None:intergenic
TGAGTCGGTTGAAACAGCAA+GGG 0.701089 7_2:+78006763 Msa1078970:CDS
TGGATACTGATGTTGCAGAG+TGG 0.711923 7_2:+78006627 Msa1078970:CDS
GAGAGAGGCTGAATTATACG+AGG 0.729149 7_2:+78006439 Msa1078970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATTAATCAATTAAGTT+GGG - chr7_2:78005012-78005031 None:intergenic 10.0%
!!! GATGAATATTAAAAATATTT+TGG - chr7_2:78005468-78005487 None:intergenic 10.0%
!! CATAAATTAATCAATTAAGT+TGG - chr7_2:78005013-78005032 None:intergenic 15.0%
!!! GATTAATTTATGAGTATTTT+TGG + chr7_2:78005021-78005040 Msa1078970:intron 15.0%
!! AAATATCAAATATAAGCAAA+TGG - chr7_2:78005171-78005190 None:intergenic 15.0%
!!! GTTCGTAAATTTTTTTTTTA+TGG + chr7_2:78005390-78005409 Msa1078970:intron 15.0%
!! TAATAATAATTGAGTTCAGA+GGG - chr7_2:78004879-78004898 None:intergenic 20.0%
!! ATAATAATAATTGAGTTCAG+AGG - chr7_2:78004880-78004899 None:intergenic 20.0%
!! AGAGATAATTATTATAACGA+GGG - chr7_2:78004988-78005007 None:intergenic 20.0%
!! AAGAGATAATTATTATAACG+AGG - chr7_2:78004989-78005008 None:intergenic 20.0%
!! TGGAATAATAACATTAAATG+TGG + chr7_2:78005041-78005060 Msa1078970:intron 20.0%
!! CAATTTATGTATTTCATTCA+TGG - chr7_2:78005868-78005887 None:intergenic 20.0%
!!! ATGTTTTTGTTTTTCTTCTT+TGG - chr7_2:78007106-78007125 None:intergenic 20.0%
!! TCTTTTGGTATCTTTCTTAT+GGG - chr7_2:78004789-78004808 None:intergenic 25.0%
! ATCTTGAATTCATGTGAAAA+CGG + chr7_2:78004942-78004961 Msa1078970:intron 25.0%
! GAGATAATTATTATAACGAG+GGG - chr7_2:78004987-78005006 None:intergenic 25.0%
! TATTTGAGTCCAACAAATTT+AGG + chr7_2:78005186-78005205 Msa1078970:intron 25.0%
! TATTTGAGTCCAACAAATTT+AGG + chr7_2:78005186-78005205 Msa1078970:intron 25.0%
! AGTATCTATCAATATCATCA+AGG - chr7_2:78005336-78005355 None:intergenic 25.0%
! GATAGATACTTATTGTTTAG+TGG + chr7_2:78005346-78005365 Msa1078970:intron 25.0%
!! TTATAATGTGTCTCTTTTTC+TGG + chr7_2:78005511-78005530 Msa1078970:intron 25.0%
! TATGGAAAAACTAAGAAATG+AGG + chr7_2:78006001-78006020 Msa1078970:CDS 25.0%
!!! TTCAGTTACTTTTTTCAACT+CGG - chr7_2:78006678-78006697 None:intergenic 25.0%
! AACTTTCAATCTCCTTAATT+CGG - chr7_2:78006915-78006934 None:intergenic 25.0%
!! TGTACTCTTTTTATTCTTAC+TGG + chr7_2:78007196-78007215 Msa1078970:three_prime_UTR 25.0%
!! TGGATGTTGTTATTATTGTT+AGG + chr7_2:78007216-78007235 Msa1078970:three_prime_UTR 25.0%
! TGTAGAAACAAAATACAGTA+GGG - chr7_2:78007298-78007317 None:intergenic 25.0%
! TTGTAGAAACAAAATACAGT+AGG - chr7_2:78007299-78007318 None:intergenic 25.0%
!!! AATTTTGATACTACTTGCTA+AGG - chr7_2:78007349-78007368 None:intergenic 25.0%
! AGCAAGTAGTATCAAAATTA+TGG + chr7_2:78007350-78007369 Msa1078970:three_prime_UTR 25.0%
! ATTATGGATGAAAATGTGTT+TGG + chr7_2:78007366-78007385 Msa1078970:three_prime_UTR 25.0%
! CTTTTGGTATCTTTCTTATG+GGG - chr7_2:78004788-78004807 None:intergenic 30.0%
! GTCTTTTGGTATCTTTCTTA+TGG - chr7_2:78004790-78004809 None:intergenic 30.0%
GTTTCAAATACCTCAGATAT+TGG - chr7_2:78004852-78004871 None:intergenic 30.0%
!! AAAAGAGTGCCTAAATTTGT+TGG - chr7_2:78005198-78005217 None:intergenic 30.0%
!! AAAAGAGTGCCTAAATTTGT+TGG - chr7_2:78005198-78005217 None:intergenic 30.0%
! TCTTTTGCTAATAATGTGGA+TGG + chr7_2:78005264-78005283 Msa1078970:intron 30.0%
! CTTTTGCTAATAATGTGGAT+GGG + chr7_2:78005265-78005284 Msa1078970:intron 30.0%
TAAGGATCAACTTAACTCAT+CGG + chr7_2:78005611-78005630 Msa1078970:CDS 30.0%
AGAACTCAGTAAAATATCTC+AGG + chr7_2:78005764-78005783 Msa1078970:CDS 30.0%
! GTTGTTAGTCTGAGAAAATT+CGG - chr7_2:78005919-78005938 None:intergenic 30.0%
AAAATCTCAAGCAAAATCCT+TGG + chr7_2:78006181-78006200 Msa1078970:CDS 30.0%
AGGAAAATGAGGAGATAAAT+GGG + chr7_2:78006258-78006277 Msa1078970:CDS 30.0%
GACAAAACTTAGCTATGTAA+TGG + chr7_2:78006805-78006824 Msa1078970:CDS 30.0%
! TACACATTTTCCATTGTTTC+CGG - chr7_2:78006993-78007012 None:intergenic 30.0%
GAAACAATGGAAAATGTGTA+GGG + chr7_2:78006993-78007012 Msa1078970:CDS 30.0%
TCATCTGTGTCTTCTAAATA+AGG - chr7_2:78007076-78007095 None:intergenic 30.0%
AAAAACATGCTGAAGAAGAT+TGG + chr7_2:78007118-78007137 Msa1078970:CDS 30.0%
! GGATTTGATGACAATAAAAC+AGG - chr7_2:78007328-78007347 None:intergenic 30.0%
! TATTATAACGAGGGGCATAT+TGG - chr7_2:78004979-78004998 None:intergenic 35.0%
TACTTGACATTTAACCCACT+TGG + chr7_2:78005070-78005089 Msa1078970:intron 35.0%
ACTTGACATTTAACCCACTT+GGG + chr7_2:78005071-78005090 Msa1078970:intron 35.0%
CAAATATAAGCAAATGGCAC+CGG - chr7_2:78005165-78005184 None:intergenic 35.0%
! GCACTCTTTTGCTAATAATG+TGG + chr7_2:78005260-78005279 Msa1078970:intron 35.0%
!!! TTTTCTGGCTTTAGAAGAAG+CGG + chr7_2:78005526-78005545 Msa1078970:intron 35.0%
ATGGAAGACAAAAGTTCAAG+AGG + chr7_2:78005638-78005657 Msa1078970:CDS 35.0%
TAGTGAAGCTATCTCTGTTA+TGG + chr7_2:78005983-78006002 Msa1078970:CDS 35.0%
!! TACTTCTAAAGCTCGTGATT+CGG - chr7_2:78006045-78006064 None:intergenic 35.0%
!! TCACGAGCTTTAGAAGTAAT+TGG + chr7_2:78006047-78006066 Msa1078970:CDS 35.0%
TGGCAAAATGCAAATGCAAT+TGG + chr7_2:78006067-78006086 Msa1078970:CDS 35.0%
GGAAACAGTAAATAAGACAG+TGG + chr7_2:78006088-78006107 Msa1078970:CDS 35.0%
!! TTGCTTTTATACCATCCGAT+TGG - chr7_2:78006121-78006140 None:intergenic 35.0%
TTGTTCCAACTCAAAAGCTA+AGG - chr7_2:78006159-78006178 None:intergenic 35.0%
! ACTGATTCAACCAATGGAAA+GGG + chr7_2:78006227-78006246 Msa1078970:CDS 35.0%
CAGGAAAATGAGGAGATAAA+TGG + chr7_2:78006257-78006276 Msa1078970:CDS 35.0%
TTCCTCTTGGTATCTTATCT+CGG - chr7_2:78006348-78006367 None:intergenic 35.0%
CTGAATTATACGAGGAATTG+AGG + chr7_2:78006447-78006466 Msa1078970:CDS 35.0%
! ATTGAGATTCCTTTTCCATC+AGG - chr7_2:78006508-78006527 None:intergenic 35.0%
ATCTCAATTGCTGAGTTTGT+CGG + chr7_2:78006520-78006539 Msa1078970:CDS 35.0%
!! AGATCGCTTTTCATTGATAC+TGG - chr7_2:78006567-78006586 None:intergenic 35.0%
TGCTGCAGAACTCAAAAAAA+TGG + chr7_2:78006607-78006626 Msa1078970:CDS 35.0%
AGAAAACAGTATCCTCAAGA+TGG + chr7_2:78006697-78006716 Msa1078970:CDS 35.0%
TATCCTCAAGATGGAGATAA+AGG + chr7_2:78006706-78006725 Msa1078970:CDS 35.0%
GCAGAATAAAATCACTGAAG+AGG + chr7_2:78006736-78006755 Msa1078970:CDS 35.0%
! TAGCTATGTAATGGAAGAAG+CGG + chr7_2:78006814-78006833 Msa1078970:CDS 35.0%
GGATAAAAGTAACAGAAGAG+TGG + chr7_2:78006835-78006854 Msa1078970:CDS 35.0%
GGAAACAATGGAAAATGTGT+AGG + chr7_2:78006992-78007011 Msa1078970:CDS 35.0%
GGAAAATGTGTAGGGAAAAA+CGG + chr7_2:78007001-78007020 Msa1078970:CDS 35.0%
TGTTAGGTATTACTAGTGTC+TGG + chr7_2:78007232-78007251 Msa1078970:three_prime_UTR 35.0%
ACAGCTTGATTCAAGAAAGT+TGG - chr7_2:78007260-78007279 None:intergenic 35.0%
AATACAGTAGGGTCCTATAA+CGG - chr7_2:78007287-78007306 None:intergenic 35.0%
!! GATTTCCTTTGGGACATTTC+TGG - chr7_2:78004687-78004706 None:intergenic 40.0%
TGTAGCAGGTGATTTCCTTT+GGG - chr7_2:78004697-78004716 None:intergenic 40.0%
TTGTAGCAGGTGATTTCCTT+TGG - chr7_2:78004698-78004717 None:intergenic 40.0%
!! ACCAAACTCTGGTTCTAACT+CGG + chr7_2:78004746-78004765 Msa1078970:CDS 40.0%
GGTATCTTTCTTATGGGGTT+TGG - chr7_2:78004783-78004802 None:intergenic 40.0%
! ACTTTCGGACTCATGTCTTT+TGG - chr7_2:78004804-78004823 None:intergenic 40.0%
AACCTGCGTTCGTTTACTTT+CGG - chr7_2:78004819-78004838 None:intergenic 40.0%
ATCACACAGTCCAATATCTG+AGG + chr7_2:78004839-78004858 Msa1078970:CDS 40.0%
! GGTTAGTTAGACTTGCCTTA+TGG + chr7_2:78005286-78005305 Msa1078970:intron 40.0%
!! AGAAGATCTGAAGAGTGCTA+AGG + chr7_2:78005593-78005612 Msa1078970:CDS 40.0%
AACTTAACTCATCGGAGTCA+TGG + chr7_2:78005619-78005638 Msa1078970:CDS 40.0%
GAAGACAAAAGTTCAAGAGG+AGG + chr7_2:78005641-78005660 Msa1078970:CDS 40.0%
! TTCTTCCAGCTCTTTTGACA+GGG - chr7_2:78005694-78005713 None:intergenic 40.0%
! ATTCTTCCAGCTCTTTTGAC+AGG - chr7_2:78005695-78005714 None:intergenic 40.0%
! AGAATCCCGTCAACAGTTTT+CGG + chr7_2:78005710-78005729 Msa1078970:CDS 40.0%
AAAGGTCCGAAAACTGTTGA+CGG - chr7_2:78005719-78005738 None:intergenic 40.0%
TTCTTGAAGTCGTGCTTCTT+CGG - chr7_2:78005748-78005767 None:intergenic 40.0%
!!! AATCCATTGAGTGCTGCTTT+TGG - chr7_2:78005827-78005846 None:intergenic 40.0%
!! CAAGTCCTTAGCTTTTGAGT+TGG + chr7_2:78006151-78006170 Msa1078970:CDS 40.0%
ATCTCAAGCAAAATCCTTGG+AGG + chr7_2:78006184-78006203 Msa1078970:CDS 40.0%
!! CTTGACACTGATTCAACCAA+TGG + chr7_2:78006221-78006240 Msa1078970:CDS 40.0%
!! CACTGATTCAACCAATGGAA+AGG + chr7_2:78006226-78006245 Msa1078970:CDS 40.0%
CAACTGCTCTACTTCAGATT+TGG - chr7_2:78006306-78006325 None:intergenic 40.0%
AGAGCAGTTGAAATCTGCAT+TGG + chr7_2:78006316-78006335 Msa1078970:CDS 40.0%
TTCTAATCTGCAATGTGCTC+TGG - chr7_2:78006376-78006395 None:intergenic 40.0%
!! TAGAAGTGCTTACGAACAAC+TGG + chr7_2:78006391-78006410 Msa1078970:CDS 40.0%
GAATTGAGGAAAGCTATAGC+TGG + chr7_2:78006461-78006480 Msa1078970:CDS 40.0%
AAAAGCAAGCCTGATGGAAA+AGG + chr7_2:78006496-78006515 Msa1078970:CDS 40.0%
ATGAAAAGCGATCTACTGAC+AGG + chr7_2:78006573-78006592 Msa1078970:CDS 40.0%
TGAAAAGCGATCTACTGACA+GGG + chr7_2:78006574-78006593 Msa1078970:CDS 40.0%
ACTCCTTTATCTCCATCTTG+AGG - chr7_2:78006712-78006731 None:intergenic 40.0%
CAAGATGGAGATAAAGGAGT+TGG + chr7_2:78006712-78006731 Msa1078970:CDS 40.0%
TGAAAGTTCAGTCTGATCAG+TGG + chr7_2:78006927-78006946 Msa1078970:CDS 40.0%
GCATCTATACTTTCTACCAC+CGG + chr7_2:78006971-78006990 Msa1078970:CDS 40.0%
! ACATTTTCCATTGTTTCCGG+TGG - chr7_2:78006990-78007009 None:intergenic 40.0%
!! TGAAGAAGATTGGAGTGTTG+TGG + chr7_2:78007128-78007147 Msa1078970:CDS 40.0%
TCAAGCTGTTCAACCGTTAT+AGG + chr7_2:78007271-78007290 Msa1078970:three_prime_UTR 40.0%
!! TTGGGACATTTCTGGAGCAT+TGG - chr7_2:78004679-78004698 None:intergenic 45.0%
ATGCTCCAGAAATGTCCCAA+AGG + chr7_2:78004679-78004698 Msa1078970:CDS 45.0%
!! CAGAGTTTGGTGTCTTCAAC+TGG - chr7_2:78004737-78004756 None:intergenic 45.0%
CAGTTGAAGACACCAAACTC+TGG + chr7_2:78004735-78004754 Msa1078970:CDS 45.0%
!! CTTTCTTATGGGGTTTGGTG+AGG - chr7_2:78004778-78004797 None:intergenic 45.0%
GACATTTAACCCACTTGGGT+TGG + chr7_2:78005075-78005094 Msa1078970:intron 45.0%
!! TTAGAAGAAGCGGACTAGCA+AGG + chr7_2:78005536-78005555 Msa1078970:intron 45.0%
GACTAGCAAGGTTCAGGAAT+TGG + chr7_2:78005548-78005567 Msa1078970:CDS 45.0%
AAGGTCCGAAAACTGTTGAC+GGG - chr7_2:78005718-78005737 None:intergenic 45.0%
TGCATGGCAATCTGAACTTG+AGG + chr7_2:78005797-78005816 Msa1078970:CDS 45.0%
TGTCCAAAAGCAGCACTCAA+TGG + chr7_2:78005821-78005840 Msa1078970:CDS 45.0%
! CTCAATGGATTCATCTGCTC+TGG + chr7_2:78005836-78005855 Msa1078970:CDS 45.0%
GTCTGATCATGCTCAGATTC+AGG + chr7_2:78005944-78005963 Msa1078970:CDS 45.0%
ATGCTCAGATTCAGGACTTG+AGG + chr7_2:78005952-78005971 Msa1078970:CDS 45.0%
TCAGATTCAGGACTTGAGGA+TGG + chr7_2:78005956-78005975 Msa1078970:CDS 45.0%
AATCCTTGGAGGAACTTGTG+AGG + chr7_2:78006195-78006214 Msa1078970:CDS 45.0%
TTTCCTCACAAGTTCCTCCA+AGG - chr7_2:78006201-78006220 None:intergenic 45.0%
CTGAGAAAGTCCCTTTCCAT+TGG - chr7_2:78006240-78006259 None:intergenic 45.0%
CAATGGAAAGGGACTTTCTC+AGG + chr7_2:78006238-78006257 Msa1078970:CDS 45.0%
GGGACTTTCTCAGGAAAATG+AGG + chr7_2:78006247-78006266 Msa1078970:CDS 45.0%
AGATTTGGCAGAGATAAGCG+CGG - chr7_2:78006291-78006310 None:intergenic 45.0%
TGCCGAGATAAGATACCAAG+AGG + chr7_2:78006343-78006362 Msa1078970:CDS 45.0%
! TGCTCTGGATGTATTCCTCT+TGG - chr7_2:78006361-78006380 None:intergenic 45.0%
ATCAGAATCCAGTGAGAGAG+AGG + chr7_2:78006424-78006443 Msa1078970:CDS 45.0%
TAATTCAGCCTCTCTCTCAC+TGG - chr7_2:78006435-78006454 None:intergenic 45.0%
GAGAGAGGCTGAATTATACG+AGG + chr7_2:78006439-78006458 Msa1078970:CDS 45.0%
AGAGCTAAAAGCAAGCCTGA+TGG + chr7_2:78006490-78006509 Msa1078970:CDS 45.0%
TCAATTGCTGAGTTTGTCGG+CGG + chr7_2:78006523-78006542 Msa1078970:CDS 45.0%
TGGATACTGATGTTGCAGAG+TGG + chr7_2:78006627-78006646 Msa1078970:CDS 45.0%
TTGAGTCGGTTGAAACAGCA+AGG + chr7_2:78006762-78006781 Msa1078970:CDS 45.0%
TGAGTCGGTTGAAACAGCAA+GGG + chr7_2:78006763-78006782 Msa1078970:CDS 45.0%
TCAGGCTGCAAATTCAGAGT+TGG + chr7_2:78006886-78006905 Msa1078970:CDS 45.0%
CAGAGTTGGAAGCCGAATTA+AGG + chr7_2:78006900-78006919 Msa1078970:CDS 45.0%
TGATCAGTGGAGAAAAGCAG+CGG + chr7_2:78006940-78006959 Msa1078970:CDS 45.0%
CTTTCTACCACCGGAAACAA+TGG + chr7_2:78006980-78006999 Msa1078970:CDS 45.0%
!! AGAAGATTGGAGTGTTGTGG+AGG + chr7_2:78007131-78007150 Msa1078970:CDS 45.0%
GCCGAGTTAGAACCAGAGTT+TGG - chr7_2:78004750-78004769 None:intergenic 50.0%
!! TCTTATGGGGTTTGGTGAGG+AGG - chr7_2:78004775-78004794 None:intergenic 50.0%
GTCCGAAAGTAAACGAACGC+AGG + chr7_2:78004814-78004833 Msa1078970:CDS 50.0%
!! GTGGTATTGGCTTGGGTCTT+GGG + chr7_2:78005102-78005121 Msa1078970:intron 50.0%
GAATCGAACCTGAGACCTTG+CGG - chr7_2:78005139-78005158 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCTC+CGG + chr7_2:78005143-78005162 Msa1078970:intron 50.0%
CTTGCCTTATGGAGCTATCG+CGG + chr7_2:78005297-78005316 Msa1078970:intron 50.0%
TTAGCCGCGATAGCTCCATA+AGG - chr7_2:78005304-78005323 None:intergenic 50.0%
ACTGTCCCTGTCAAAAGAGC+TGG + chr7_2:78005686-78005705 Msa1078970:CDS 50.0%
AAGTCGTGCTTCTTCGGAAG+CGG - chr7_2:78005742-78005761 None:intergenic 50.0%
GACAGTGGAGACACTCCAAT+CGG + chr7_2:78006103-78006122 Msa1078970:CDS 50.0%
AGTTTGTCGGCGGAGAATGA+GGG + chr7_2:78006533-78006552 Msa1078970:CDS 50.0%
CACTGAAGAGGCTGTTGAGT+CGG + chr7_2:78006748-78006767 Msa1078970:CDS 50.0%
CTGAGCAGCATCTAGCTGTT+CGG - chr7_2:78006870-78006889 None:intergenic 50.0%
GCAGTTCGAGGAGTTGTAGC+AGG - chr7_2:78004711-78004730 None:intergenic 55.0%
TTCAACTGGCGAGCAGTTCG+AGG - chr7_2:78004723-78004742 None:intergenic 55.0%
!! TATGGGGTTTGGTGAGGAGG+AGG - chr7_2:78004772-78004791 None:intergenic 55.0%
!! TTAACCCACTTGGGTTGGCC+TGG + chr7_2:78005080-78005099 Msa1078970:intron 55.0%
!! TTGGGTTGGCCTGGTGGTAT+TGG + chr7_2:78005089-78005108 Msa1078970:intron 55.0%
!! TTGGCCTGGTGGTATTGGCT+TGG + chr7_2:78005094-78005113 Msa1078970:intron 55.0%
!! TGGCCTGGTGGTATTGGCTT+GGG + chr7_2:78005095-78005114 Msa1078970:intron 55.0%
AGACCCAAGCCAATACCACC+AGG - chr7_2:78005101-78005120 None:intergenic 55.0%
!! GGTGGTATTGGCTTGGGTCT+TGG + chr7_2:78005101-78005120 Msa1078970:intron 55.0%
!! GAAGCGGACTAGCAAGGTTC+AGG + chr7_2:78005542-78005561 Msa1078970:CDS 55.0%
GTGCTTCTTCGGAAGCGGAA+AGG - chr7_2:78005737-78005756 None:intergenic 55.0%
CTCAGGATCGAGATCGTGCA+TGG + chr7_2:78005781-78005800 Msa1078970:CDS 55.0%
GTGGAGACACTCCAATCGGA+TGG + chr7_2:78006107-78006126 Msa1078970:CDS 55.0%
GAGTTTGTCGGCGGAGAATG+AGG + chr7_2:78006532-78006551 Msa1078970:CDS 55.0%
GTTTGTCGGCGGAGAATGAG+GGG + chr7_2:78006534-78006553 Msa1078970:CDS 55.0%
CGAACAGCTAGATGCTGCTC+AGG + chr7_2:78006868-78006887 Msa1078970:CDS 55.0%
TCAGTGGAGAAAAGCAGCGG+AGG + chr7_2:78006943-78006962 Msa1078970:CDS 55.0%
ACCACCAGGCCAACCCAAGT+GGG - chr7_2:78005087-78005106 None:intergenic 60.0%
TACCACCAGGCCAACCCAAG+TGG - chr7_2:78005088-78005107 None:intergenic 60.0%
TCGAACCTGAGACCTTGCGG+AGG - chr7_2:78005136-78005155 None:intergenic 60.0%
!! ACCCACTTGGGTTGGCCTGG+TGG + chr7_2:78005083-78005102 Msa1078970:intron 65.0%
! TGGGAGTGTGCTCCTCCGCA+AGG + chr7_2:78005121-78005140 Msa1078970:intron 65.0%
GTGCTCCTCCGCAAGGTCTC+AGG + chr7_2:78005128-78005147 Msa1078970:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 78004663 78007401 78004663 ID=Msa1078970;Name=Msa1078970
chr7_2 mRNA 78004663 78007401 78004663 ID=Msa1078970-mRNA-1;Parent=Msa1078970;Name=Msa1078970-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|1|0.5|1|1|1|2|233|608
chr7_2 exon 78004663 78004860 78004663 ID=Msa1078970-mRNA-1:exon:19355;Parent=Msa1078970-mRNA-1
chr7_2 exon 78005540 78007401 78005540 ID=Msa1078970-mRNA-1:exon:19356;Parent=Msa1078970-mRNA-1
chr7_2 CDS 78004663 78004860 78004663 ID=Msa1078970-mRNA-1:cds;Parent=Msa1078970-mRNA-1
chr7_2 CDS 78005540 78007168 78005540 ID=Msa1078970-mRNA-1:cds;Parent=Msa1078970-mRNA-1
chr7_2 three_prime_UTR 78007169 78007401 78007169 ID=Msa1078970-mRNA-1:three_prime_utr;Parent=Msa1078970-mRNA-1
Gene Sequence

>Msa1078970

ATGGCTGGCAGATCCAATGCTCCAGAAATGTCCCAAAGGAAATCACCTGCTACAACTCCTCGAACTGCTCGCCAGTTGAAGACACCAAACTCTGGTTCTAACTCGGCCTCCTCCTCACCAAACCCCATAAGAAAGATACCAAAAGACATGAGTCCGAAAGTAAACGAACGCAGGTTATCACACAGTCCAATATCTGAGAAGAAGCGGACTAGCAAGGTTCAGGAATTGGAATCACAGATTGCTAAGCTTCAAGAAGATCTGAAGAGTGCTAAGGATCAACTTAACTCATCGGAGTCATGGAAGACAAAAGTTCAAGAGGAGGCTGAAGAAGCAAAGAAGCAGATACTGTCCCTGTCAAAAGAGCTGGAAGAATCCCGTCAACAGTTTTCGGACCTTTCCGCTTCCGAAGAAGCACGACTTCAAGAACTCAGTAAAATATCTCAGGATCGAGATCGTGCATGGCAATCTGAACTTGAGGCTGTCCAAAAGCAGCACTCAATGGATTCATCTGCTCTGGTGTCTGCCATGAATGAAATACATAAATTGAAAAGTCAGCTTGAAAGAGCAAGCGAGTCCGAATTTTCTCAGACTAACAACGCAGAGTCTGATCATGCTCAGATTCAGGACTTGAGGATGGATCTTAGTGAAGCTATCTCTGTTATGGAAAAACTAAGAAATGAGGCAAGTAATTGCAAAGAATCCGAATCACGAGCTTTAGAAGTAATTGGCAAAATGCAAATGCAATTGGAAACAGTAAATAAGACAGTGGAGACACTCCAATCGGATGGTATAAAAGCAACTGAAGCTTACAAGTCCTTAGCTTTTGAGTTGGAACAATCAAAATCTCAAGCAAAATCCTTGGAGGAACTTGTGAGGAAACTTGACACTGATTCAACCAATGGAAAGGGACTTTCTCAGGAAAATGAGGAGATAAATGGGCTCAAAGCCGCGCTTATCTCTGCCAAATCTGAAGTAGAGCAGTTGAAATCTGCATTGGATGTTGCCGAGATAAGATACCAAGAGGAATACATCCAGAGCACATTGCAGATTAGAAGTGCTTACGAACAACTGGAACGTACAAAATCAGAATCCAGTGAGAGAGAGGCTGAATTATACGAGGAATTGAGGAAAGCTATAGCTGGTATTGAAGAGCTAAAAGCAAGCCTGATGGAAAAGGAATCTCAATTGCTGAGTTTGTCGGCGGAGAATGAGGGGTGCAATTCCAGTATCAATGAAAAGCGATCTACTGACAGGGAATCTGAACTTGCTGCAGAACTCAAAAAAATGGATACTGATGTTGCAGAGTGGAAAGCAAAATTATTAGATAGAGAGTCCGAGTTGAAAAAAGTAACTGAAGAAAACAGTATCCTCAAGATGGAGATAAAGGAGTTGGAGCAGAATAAAATCACTGAAGAGGCTGTTGAGTCGGTTGAAACAGCAAGGGCTGCAGAGAAAGAAGCTTTGACAAAACTTAGCTATGTAATGGAAGAAGCGGATAAAAGTAACAGAAGAGTGGCTCGTGTAACCGAACAGCTAGATGCTGCTCAGGCTGCAAATTCAGAGTTGGAAGCCGAATTAAGGAGATTGAAAGTTCAGTCTGATCAGTGGAGAAAAGCAGCGGAGGCAGCTGCATCTATACTTTCTACCACCGGAAACAATGGAAAATGTGTAGGGAAAAACGGCGCACTTGACAGTAGTTTCAACTCTATTTCAAGCAAGACAATGAATTCACCTTATTTAGAAGACACAGATGATGAGTCTCCAAAGAAGAAAAACAAAAACATGCTGAAGAAGATTGGAGTGTTGTGGAGGAAGAATCATCATTAA

Protein sequence

>Msa1078970

MAGRSNAPEMSQRKSPATTPRTARQLKTPNSGSNSASSSPNPIRKIPKDMSPKVNERRLSHSPISEKKRTSKVQELESQIAKLQEDLKSAKDQLNSSESWKTKVQEEAEEAKKQILSLSKELEESRQQFSDLSASEEARLQELSKISQDRDRAWQSELEAVQKQHSMDSSALVSAMNEIHKLKSQLERASESEFSQTNNAESDHAQIQDLRMDLSEAISVMEKLRNEASNCKESESRALEVIGKMQMQLETVNKTVETLQSDGIKATEAYKSLAFELEQSKSQAKSLEELVRKLDTDSTNGKGLSQENEEINGLKAALISAKSEVEQLKSALDVAEIRYQEEYIQSTLQIRSAYEQLERTKSESSEREAELYEELRKAIAGIEELKASLMEKESQLLSLSAENEGCNSSINEKRSTDRESELAAELKKMDTDVAEWKAKLLDRESELKKVTEENSILKMEIKELEQNKITEEAVESVETARAAEKEALTKLSYVMEEADKSNRRVARVTEQLDAAQAANSELEAELRRLKVQSDQWRKAAEAAASILSTTGNNGKCVGKNGALDSSFNSISSKTMNSPYLEDTDDESPKKKNKNMLKKIGVLWRKNHH*