Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0510620 | XP_003603866.1 | 88.920 | 352 | 15 | 2 | 1 | 352 | 1 | 328 | 0.0 | 598 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0510620 | sp|Q8GWA7|MCD1_ARATH | 50.158 | 317 | 133 | 5 | 17 | 330 | 51 | 345 | 3.52e-100 | 302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0510620 | G7J6F8 | 88.920 | 352 | 15 | 2 | 1 | 352 | 1 | 328 | 0.0 | 598 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0118700 | Msa0510620 | 0.800942 | 1.137616e-48 | -8.615850e-47 |
| Msa0374400 | Msa0510620 | 0.813115 | 3.012942e-51 | -8.615850e-47 |
| Msa0469700 | Msa0510620 | 0.804574 | 2.023765e-49 | -8.615850e-47 |
| Msa0510620 | Msa0515530 | 0.806041 | 9.971881e-50 | -8.615850e-47 |
| Msa0510620 | Msa0515580 | 0.805605 | 1.231238e-49 | -8.615850e-47 |
| Msa0510620 | Msa0931410 | 0.806925 | 6.490593e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0510620 | MtrunA17_Chr3g0144251 | 88.920 | 352 | 15 | 2 | 1 | 352 | 1 | 328 | 0.0 | 598 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0510620 | AT1G20830.1 | 50.158 | 317 | 133 | 5 | 17 | 330 | 51 | 345 | 3.58e-101 | 302 |
| Msa0510620 | AT1G20830.2 | 56.107 | 262 | 93 | 4 | 72 | 330 | 4 | 246 | 8.05e-100 | 295 |
Find 89 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTGTTGCTGTTGTAATTT+TGG | 0.111441 | 3_4:+59727941 | Msa0510620:CDS |
| CATCCCAATGCCGCAATTTC+TGG | 0.160726 | 3_4:+59727786 | Msa0510620:CDS |
| AAGAAGTTGATGATGAAATT+TGG | 0.225810 | 3_4:-59727752 | None:intergenic |
| CTTAGGCAGGCTATAAATTT+CGG | 0.281915 | 3_4:+59730058 | Msa0510620:three_prime_UTR |
| TTGGGAGCAATTTACCGATT+TGG | 0.287214 | 3_4:+59727916 | Msa0510620:CDS |
| AGCAAATCATGGCGTCAATT+TGG | 0.293604 | 3_4:+59727476 | Msa0510620:exon |
| GGGAAACTCCTAATGAAATC+TGG | 0.319923 | 3_4:-59730209 | None:intergenic |
| TGGGAGCAATTTACCGATTT+GGG | 0.323263 | 3_4:+59727917 | Msa0510620:CDS |
| ATGTAAGTCTTAGCAGAATA+AGG | 0.333003 | 3_4:+59729208 | Msa0510620:CDS |
| GCTGTTACCCAGATTTCATT+AGG | 0.345285 | 3_4:+59730201 | Msa0510620:three_prime_UTR |
| GGGCTTCAAGCTTTCTCTGC+AGG | 0.352570 | 3_4:-59729179 | None:intergenic |
| TCAAATTCTTTAGCATTGAT+AGG | 0.353758 | 3_4:-59729873 | None:intergenic |
| GATGCACTTCCAAAGTTATT+CGG | 0.363736 | 3_4:-59729996 | None:intergenic |
| GGAAGAGGGAGCAATGAAAA+TGG | 0.381627 | 3_4:+59727423 | Msa0510620:five_prime_UTR |
| GAAGAGCTCTTTAAACAATC+AGG | 0.385369 | 3_4:+59729938 | Msa0510620:CDS |
| CCGATGACAAAGGGGCAAAA+AGG | 0.394330 | 3_4:-59727616 | None:intergenic |
| TCCTCTTGAGTAAGTGTGAC+AGG | 0.397039 | 3_4:-59728925 | None:intergenic |
| CATCGCTTCCTTATCACAAA+TGG | 0.400137 | 3_4:+59727685 | Msa0510620:CDS |
| AGATGTGTGGAAAGGTTTAC+CGG | 0.414408 | 3_4:+59728896 | Msa0510620:CDS |
| ACTTCTTCTTGTGCTACTAC+TGG | 0.419210 | 3_4:-59727641 | None:intergenic |
| TTGGAATTCCATTTGTGATA+AGG | 0.420118 | 3_4:-59727693 | None:intergenic |
| GACAGCAGGCCGAATAACTT+TGG | 0.423013 | 3_4:+59729987 | Msa0510620:CDS |
| CCTACCAGAAATTGCGGCAT+TGG | 0.435076 | 3_4:-59727790 | None:intergenic |
| TTGATGATGAAATTTGGAAA+TGG | 0.444261 | 3_4:-59727746 | None:intergenic |
| CACACTTACTCAAGAGGAAC+AGG | 0.447227 | 3_4:+59728930 | Msa0510620:CDS |
| TTTGGAAGTGCATCATCATC+TGG | 0.449415 | 3_4:+59730005 | Msa0510620:CDS |
| GCAACCACCTCTACAGATAT+CGG | 0.457074 | 3_4:+59729084 | Msa0510620:CDS |
| TAAGTGTGACAGGGGCTAAC+CGG | 0.458683 | 3_4:-59728915 | None:intergenic |
| CTACCAGAAATTGCGGCATT+GGG | 0.461927 | 3_4:-59727789 | None:intergenic |
| GGCTTCAAGCTTTCTCTGCA+GGG | 0.469067 | 3_4:-59729178 | None:intergenic |
| ATCTGTAGAGGTGGTTGCAA+AGG | 0.470698 | 3_4:-59729079 | None:intergenic |
| GAACTGAGTCTCCTTCCTTA+AGG | 0.471097 | 3_4:-59729008 | None:intergenic |
| TGTAGACTAATCGAAACATT+GGG | 0.478399 | 3_4:+59727898 | Msa0510620:intron |
| ATTGTATCGGGATCAACATC+TGG | 0.478900 | 3_4:-59729033 | None:intergenic |
| ACAGCAACACAGACCCAAAT+CGG | 0.483257 | 3_4:-59727930 | None:intergenic |
| CCTCATGCTCAGCTTGAATA+CGG | 0.491562 | 3_4:-59729155 | None:intergenic |
| CTACTGGTACCGATGACAAA+GGG | 0.493008 | 3_4:-59727625 | None:intergenic |
| CAGAAATTGCGGCATTGGGA+TGG | 0.494001 | 3_4:-59727785 | None:intergenic |
| TGTTGTTTGAATTGTTGAGT+TGG | 0.499265 | 3_4:-59727712 | None:intergenic |
| GGAAACTCCTAATGAAATCT+GGG | 0.501084 | 3_4:-59730208 | None:intergenic |
| ATGTTGATCCCGATACAATC+AGG | 0.507636 | 3_4:+59729037 | Msa0510620:CDS |
| GCAATAGCAATAGCAAATCA+TGG | 0.510656 | 3_4:+59727465 | Msa0510620:exon |
| GGAATCCACCTGATTGTATC+GGG | 0.511366 | 3_4:-59729045 | None:intergenic |
| ACGCACGTGATCTCCTTCTC+TGG | 0.511994 | 3_4:-59728960 | None:intergenic |
| GTACTATTATCGGTGAGCAT+TGG | 0.513680 | 3_4:+59730114 | Msa0510620:three_prime_UTR |
| CATGATCATTTAATCTGCCA+TGG | 0.520486 | 3_4:-59729911 | None:intergenic |
| TCTAAAACCGCATCAAACAT+AGG | 0.521643 | 3_4:-59729243 | None:intergenic |
| CCTCTTGAGTAAGTGTGACA+GGG | 0.528748 | 3_4:-59728924 | None:intergenic |
| ACAAGATCAGCTACGGAACC+AGG | 0.529125 | 3_4:-59728011 | None:intergenic |
| AGGAATCCACCTGATTGTAT+CGG | 0.532431 | 3_4:-59729046 | None:intergenic |
| GTTGCAAAGGGATGATTCGC+AGG | 0.533369 | 3_4:-59729066 | None:intergenic |
| CCTCCTCAAAATTAGACAGC+AGG | 0.533371 | 3_4:+59729973 | Msa0510620:CDS |
| TTGTAGACTAATCGAAACAT+TGG | 0.537325 | 3_4:+59727897 | Msa0510620:intron |
| ACTGTCTATTTGTATAGCTA+AGG | 0.541900 | 3_4:+59730138 | Msa0510620:three_prime_UTR |
| AACAGGCGGTTCACCAGAGA+AGG | 0.544520 | 3_4:+59728947 | Msa0510620:CDS |
| CATTTGTGATAAGGAAGCGA+TGG | 0.548151 | 3_4:-59727684 | None:intergenic |
| GGAGATCACGTGCGTATCAG+TGG | 0.548992 | 3_4:+59728968 | Msa0510620:CDS |
| TCTGTAGAGGTGGTTGCAAA+GGG | 0.561104 | 3_4:-59729078 | None:intergenic |
| CCCTGTCACACTTACTCAAG+AGG | 0.564938 | 3_4:+59728924 | Msa0510620:CDS |
| CAACAGTCCTATGTTTGATG+CGG | 0.570919 | 3_4:+59729236 | Msa0510620:CDS |
| ATTCGATAATCCCTTGGTCA+AGG | 0.575622 | 3_4:+59728849 | Msa0510620:CDS |
| ATTTGTGATAAGGAAGCGAT+GGG | 0.587501 | 3_4:-59727683 | None:intergenic |
| GAGAGACCATTCGACTCCCA+TGG | 0.588483 | 3_4:+59729894 | Msa0510620:CDS |
| AGATCCATTCGATAATCCCT+TGG | 0.593415 | 3_4:+59728843 | Msa0510620:CDS |
| TAGACGCGGTCAATTGAGAT+CGG | 0.593965 | 3_4:+59728034 | Msa0510620:CDS |
| CCGTATTCAAGCTGAGCATG+AGG | 0.599509 | 3_4:+59729155 | Msa0510620:CDS |
| AAGTGTAGAGATGTGTGGAA+AGG | 0.612784 | 3_4:+59728888 | Msa0510620:CDS |
| TGAAAGCCTACCAGAAATTG+CGG | 0.615471 | 3_4:-59727796 | None:intergenic |
| TGCTCAGCTTGAATACGGAA+AGG | 0.619175 | 3_4:-59729150 | None:intergenic |
| ATGATCATTTAATCTGCCAT+GGG | 0.621182 | 3_4:-59729910 | None:intergenic |
| CTCACCGATATCTGTAGAGG+TGG | 0.625854 | 3_4:-59729088 | None:intergenic |
| TTGACCAAGGGATTATCGAA+TGG | 0.627921 | 3_4:-59728847 | None:intergenic |
| GTTAGTCTCGTAGCACGAAG+TGG | 0.633315 | 3_4:-59730230 | None:intergenic |
| GCGTCTAACAAGATCAGCTA+CGG | 0.634159 | 3_4:-59728018 | None:intergenic |
| TTAGTCTCGTAGCACGAAGT+GGG | 0.634287 | 3_4:-59730229 | None:intergenic |
| GTCCTCACCGATATCTGTAG+AGG | 0.648459 | 3_4:-59729091 | None:intergenic |
| ACTACTGGTACCGATGACAA+AGG | 0.665511 | 3_4:-59727626 | None:intergenic |
| TACTGGTACCGATGACAAAG+GGG | 0.670062 | 3_4:-59727624 | None:intergenic |
| TTGATCCCGATACAATCAGG+TGG | 0.673066 | 3_4:+59729040 | Msa0510620:CDS |
| CCTTCCTTAAGGAAAACTGT+GGG | 0.676647 | 3_4:-59728997 | None:intergenic |
| CTCTTGAGTAAGTGTGACAG+GGG | 0.681129 | 3_4:-59728923 | None:intergenic |
| TCCTTCCTTAAGGAAAACTG+TGG | 0.681803 | 3_4:-59728998 | None:intergenic |
| AAATCAAGTGTAGAGATGTG+TGG | 0.686378 | 3_4:+59728883 | Msa0510620:CDS |
| CAATTGAGATCGGATAGAAG+AGG | 0.688587 | 3_4:+59728044 | Msa0510620:CDS |
| GTATCGGGATCAACATCTGG+AGG | 0.693969 | 3_4:-59729030 | None:intergenic |
| GTAGCTGATCTTGTTAGACG+CGG | 0.705664 | 3_4:+59728020 | Msa0510620:CDS |
| ACTTACTCAAGAGGAACAGG+CGG | 0.707329 | 3_4:+59728933 | Msa0510620:CDS |
| AATCTGCCATGGGAGTCGAA+TGG | 0.713980 | 3_4:-59729900 | None:intergenic |
| CACCTCTACAGATATCGGTG+AGG | 0.728300 | 3_4:+59729089 | Msa0510620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATATATATTACTACT+AGG | + | chr3_4:59728720-59728739 | Msa0510620:intron | 10.0% |
| !! | ATTCTTGATTAAATTTAAAT+TGG | - | chr3_4:59729766-59729785 | None:intergenic | 10.0% |
| !! | TAAAAAATTTGTACTATTAT+CGG | + | chr3_4:59730104-59730123 | Msa0510620:three_prime_UTR | 10.0% |
| !!! | TTCTTATTTTAATTCAGATT+AGG | + | chr3_4:59727842-59727861 | Msa0510620:intron | 15.0% |
| !!! | TCTTATTTTAATTCAGATTA+GGG | + | chr3_4:59727843-59727862 | Msa0510620:intron | 15.0% |
| !!! | AATTTTATAATCCAAATCTA+AGG | - | chr3_4:59728484-59728503 | None:intergenic | 15.0% |
| !! | TAAATTCATGTATATTTCTT+TGG | - | chr3_4:59728694-59728713 | None:intergenic | 15.0% |
| !! | GTCTGAATAAAAAAAATTAA+TGG | + | chr3_4:59729594-59729613 | Msa0510620:intron | 15.0% |
| !!! | CTTAAACTTTAATTTTTCTT+AGG | + | chr3_4:59730041-59730060 | Msa0510620:exon | 15.0% |
| !!! | CAAACACTTTTTTATTTTTC+TGG | - | chr3_4:59727404-59727423 | None:intergenic | 20.0% |
| !!! | CAGAAAAATAAAAAAGTGTT+TGG | + | chr3_4:59727402-59727421 | Msa0510620:five_prime_UTR | 20.0% |
| !!! | TTATCTAAATTGACTTATCT+AGG | - | chr3_4:59728131-59728150 | None:intergenic | 20.0% |
| !!! | AATTGATTTTTCCTTAGATT+TGG | + | chr3_4:59728470-59728489 | Msa0510620:intron | 20.0% |
| !!! | TTTTTTATTCAGACATTACT+TGG | - | chr3_4:59729588-59729607 | None:intergenic | 20.0% |
| !!! | TTTTTACCCTCTTTTTTTAT+TGG | + | chr3_4:59729706-59729725 | Msa0510620:intron | 20.0% |
| !! | AATCAAGAATATCAAGAAAT+TGG | + | chr3_4:59729776-59729795 | Msa0510620:intron | 20.0% |
| !! | TGCAGAATAAATAATACAAA+AGG | - | chr3_4:59729822-59729841 | None:intergenic | 20.0% |
| !!! | TTTTGTATTATTTATTCTGC+AGG | + | chr3_4:59729821-59729840 | Msa0510620:intron | 20.0% |
| !!! | AAATATAATTTTATTGCTGC+TGG | + | chr3_4:59730166-59730185 | Msa0510620:three_prime_UTR | 20.0% |
| !!! | AATAAAAAAGTGTTTGGAAG+AGG | + | chr3_4:59727408-59727427 | Msa0510620:five_prime_UTR | 25.0% |
| !!! | ATAAAAAAGTGTTTGGAAGA+GGG | + | chr3_4:59727409-59727428 | Msa0510620:five_prime_UTR | 25.0% |
| !!! | TTGATGATGAAATTTGGAAA+TGG | - | chr3_4:59727749-59727768 | None:intergenic | 25.0% |
| !!! | AAGAAGTTGATGATGAAATT+TGG | - | chr3_4:59727755-59727774 | None:intergenic | 25.0% |
| !! | TTTAATTCAGATTAGGGTTT+TGG | + | chr3_4:59727849-59727868 | Msa0510620:intron | 25.0% |
| !! | TTAATTCAGATTAGGGTTTT+GGG | + | chr3_4:59727850-59727869 | Msa0510620:intron | 25.0% |
| !! | GGTTTTTATGGTATTTGATA+TGG | + | chr3_4:59727871-59727890 | Msa0510620:intron | 25.0% |
| !!! | TTCTTTTTTCCTGGAAAATT+TGG | - | chr3_4:59727988-59728007 | None:intergenic | 25.0% |
| ! | ATTTAGATTAACCGTTAGTT+TGG | + | chr3_4:59728157-59728176 | Msa0510620:intron | 25.0% |
| ! | TTAGAGCTTGAACAAAATTA+TGG | + | chr3_4:59728242-59728261 | Msa0510620:intron | 25.0% |
| !! | TAAAAGGCAAAAGTGATTTT+TGG | + | chr3_4:59728397-59728416 | Msa0510620:intron | 25.0% |
| ! | AAAGACAACAATGTAATAAC+GGG | - | chr3_4:59728775-59728794 | None:intergenic | 25.0% |
| ! | GAAAGACAACAATGTAATAA+CGG | - | chr3_4:59728776-59728795 | None:intergenic | 25.0% |
| ! | AAAAATGTTAGTCAAAAGCA+TGG | + | chr3_4:59729123-59729142 | Msa0510620:CDS | 25.0% |
| ! | ACAAAACATTAGACATAACA+TGG | + | chr3_4:59729400-59729419 | Msa0510620:intron | 25.0% |
| ! | TAAATAATACAAAAGGTGAG+TGG | - | chr3_4:59729815-59729834 | None:intergenic | 25.0% |
| !!! | TCAAATTCTTTAGCATTGAT+AGG | - | chr3_4:59729876-59729895 | None:intergenic | 25.0% |
| !!! | AACTTTAATTTTTCTTAGGC+AGG | + | chr3_4:59730045-59730064 | Msa0510620:exon | 25.0% |
| GTATCTATCGATCTTCAATT+AGG | + | chr3_4:59727533-59727552 | Msa0510620:intron | 30.0% | |
| TTGGAATTCCATTTGTGATA+AGG | - | chr3_4:59727696-59727715 | None:intergenic | 30.0% | |
| ! | TGTTGTTTGAATTGTTGAGT+TGG | - | chr3_4:59727715-59727734 | None:intergenic | 30.0% |
| !!! | ATTAGGGTTTTGGGTTTTTA+TGG | + | chr3_4:59727859-59727878 | Msa0510620:intron | 30.0% |
| TTGTAGACTAATCGAAACAT+TGG | + | chr3_4:59727897-59727916 | Msa0510620:intron | 30.0% | |
| TGTAGACTAATCGAAACATT+GGG | + | chr3_4:59727898-59727917 | Msa0510620:intron | 30.0% | |
| !!! | TAATTTTGGTTGCTTCTTTG+AGG | + | chr3_4:59727955-59727974 | Msa0510620:CDS | 30.0% |
| !!! | AATTTTGGTTGCTTCTTTGA+GGG | + | chr3_4:59727956-59727975 | Msa0510620:CDS | 30.0% |
| ! | AATTGACTTATCTAGGCATT+GGG | - | chr3_4:59728124-59728143 | None:intergenic | 30.0% |
| ! | AAATTGACTTATCTAGGCAT+TGG | - | chr3_4:59728125-59728144 | None:intergenic | 30.0% |
| !!! | ATTTTGATTGCTGTTTAGTC+TGG | - | chr3_4:59728284-59728303 | None:intergenic | 30.0% |
| !!! | GTTTGGCTTCACTTTTTAAA+AGG | + | chr3_4:59728381-59728400 | Msa0510620:intron | 30.0% |
| ! | GCTAAGACTTACATTTTGTA+GGG | - | chr3_4:59729202-59729221 | None:intergenic | 30.0% |
| ! | TGCTAAGACTTACATTTTGT+AGG | - | chr3_4:59729203-59729222 | None:intergenic | 30.0% |
| ATGTAAGTCTTAGCAGAATA+AGG | + | chr3_4:59729208-59729227 | Msa0510620:CDS | 30.0% | |
| ! | TGGACTTATCTTGACATTTT+TGG | + | chr3_4:59729478-59729497 | Msa0510620:intron | 30.0% |
| TATCCATACACTCTTCATTA+GGG | - | chr3_4:59729622-59729641 | None:intergenic | 30.0% | |
| !! | AAGAGTGTATGGATACATTT+TGG | + | chr3_4:59729627-59729646 | Msa0510620:intron | 30.0% |
| CTTCTGCCAATAAAAAAAGA+GGG | - | chr3_4:59729715-59729734 | None:intergenic | 30.0% | |
| ATTATTTATTCTGCAGGAAG+AGG | + | chr3_4:59729827-59729846 | Msa0510620:intron | 30.0% | |
| ATGATCATTTAATCTGCCAT+GGG | - | chr3_4:59729913-59729932 | None:intergenic | 30.0% | |
| ACTGTCTATTTGTATAGCTA+AGG | + | chr3_4:59730138-59730157 | Msa0510620:three_prime_UTR | 30.0% | |
| GCAATAGCAATAGCAAATCA+TGG | + | chr3_4:59727465-59727484 | Msa0510620:exon | 35.0% | |
| ATTTGTGATAAGGAAGCGAT+GGG | - | chr3_4:59727686-59727705 | None:intergenic | 35.0% | |
| !! | CTGTGTTGCTGTTGTAATTT+TGG | + | chr3_4:59727941-59727960 | Msa0510620:CDS | 35.0% |
| ATTCTGTTCTGCCAAACTAA+CGG | - | chr3_4:59728171-59728190 | None:intergenic | 35.0% | |
| !! | TTTGTTCAAGCTCTAAAGTG+TGG | - | chr3_4:59728238-59728257 | None:intergenic | 35.0% |
| TGTTTAGTCTGGCAAAATTG+TGG | - | chr3_4:59728273-59728292 | None:intergenic | 35.0% | |
| !! | TGTGCATGTTTTTCAGATCA+AGG | + | chr3_4:59728806-59728825 | Msa0510620:intron | 35.0% |
| AAATCAAGTGTAGAGATGTG+TGG | + | chr3_4:59728883-59728902 | Msa0510620:CDS | 35.0% | |
| ! | TCTAAAACCGCATCAAACAT+AGG | - | chr3_4:59729246-59729265 | None:intergenic | 35.0% |
| !! | TATGTTTGATGCGGTTTTAG+AGG | + | chr3_4:59729245-59729264 | Msa0510620:CDS | 35.0% |
| TAGCAACTAGGATAAAGACA+TGG | - | chr3_4:59729285-59729304 | None:intergenic | 35.0% | |
| TGTCTTTATCCTAGTTGCTA+AGG | + | chr3_4:59729285-59729304 | Msa0510620:intron | 35.0% | |
| TATCCTAGTTGCTAAGGATT+TGG | + | chr3_4:59729291-59729310 | Msa0510620:intron | 35.0% | |
| ATCCTAGTTGCTAAGGATTT+GGG | + | chr3_4:59729292-59729311 | Msa0510620:intron | 35.0% | |
| ATCCATACACTCTTCATTAG+GGG | - | chr3_4:59729621-59729640 | None:intergenic | 35.0% | |
| GTATCCATACACTCTTCATT+AGG | - | chr3_4:59729623-59729642 | None:intergenic | 35.0% | |
| CCTTCTGCCAATAAAAAAAG+AGG | - | chr3_4:59729716-59729735 | None:intergenic | 35.0% | |
| !!! | CCTCTTTTTTTATTGGCAGA+AGG | + | chr3_4:59729713-59729732 | Msa0510620:intron | 35.0% |
| CATGATCATTTAATCTGCCA+TGG | - | chr3_4:59729914-59729933 | None:intergenic | 35.0% | |
| GAAGAGCTCTTTAAACAATC+AGG | + | chr3_4:59729938-59729957 | Msa0510620:CDS | 35.0% | |
| GATGCACTTCCAAAGTTATT+CGG | - | chr3_4:59729999-59730018 | None:intergenic | 35.0% | |
| CTTAGGCAGGCTATAAATTT+CGG | + | chr3_4:59730058-59730077 | Msa0510620:three_prime_UTR | 35.0% | |
| GGAAACTCCTAATGAAATCT+GGG | - | chr3_4:59730211-59730230 | None:intergenic | 35.0% | |
| AGCAAATCATGGCGTCAATT+TGG | + | chr3_4:59727476-59727495 | Msa0510620:exon | 40.0% | |
| ! | ACTTCTTCTTGTGCTACTAC+TGG | - | chr3_4:59727644-59727663 | None:intergenic | 40.0% |
| CATTTGTGATAAGGAAGCGA+TGG | - | chr3_4:59727687-59727706 | None:intergenic | 40.0% | |
| CATCGCTTCCTTATCACAAA+TGG | + | chr3_4:59727685-59727704 | Msa0510620:CDS | 40.0% | |
| TGAAAGCCTACCAGAAATTG+CGG | - | chr3_4:59727799-59727818 | None:intergenic | 40.0% | |
| ! | TTGGGAGCAATTTACCGATT+TGG | + | chr3_4:59727916-59727935 | Msa0510620:CDS | 40.0% |
| !! | TGGGAGCAATTTACCGATTT+GGG | + | chr3_4:59727917-59727936 | Msa0510620:CDS | 40.0% |
| CAATTGAGATCGGATAGAAG+AGG | + | chr3_4:59728044-59728063 | Msa0510620:CDS | 40.0% | |
| ACGGGAAGCTAAATCTCAAT+AGG | - | chr3_4:59728757-59728776 | None:intergenic | 40.0% | |
| AGATCCATTCGATAATCCCT+TGG | + | chr3_4:59728843-59728862 | Msa0510620:CDS | 40.0% | |
| TTGACCAAGGGATTATCGAA+TGG | - | chr3_4:59728850-59728869 | None:intergenic | 40.0% | |
| ATTCGATAATCCCTTGGTCA+AGG | + | chr3_4:59728849-59728868 | Msa0510620:CDS | 40.0% | |
| ! | CTTTTGCTAACCTTGACCAA+GGG | - | chr3_4:59728862-59728881 | None:intergenic | 40.0% |
| AAGTGTAGAGATGTGTGGAA+AGG | + | chr3_4:59728888-59728907 | Msa0510620:CDS | 40.0% | |
| AGATGTGTGGAAAGGTTTAC+CGG | + | chr3_4:59728896-59728915 | Msa0510620:CDS | 40.0% | |
| CCTTCCTTAAGGAAAACTGT+GGG | - | chr3_4:59729000-59729019 | None:intergenic | 40.0% | |
| TCCTTCCTTAAGGAAAACTG+TGG | - | chr3_4:59729001-59729020 | None:intergenic | 40.0% | |
| ATTGTATCGGGATCAACATC+TGG | - | chr3_4:59729036-59729055 | None:intergenic | 40.0% | |
| ATGTTGATCCCGATACAATC+AGG | + | chr3_4:59729037-59729056 | Msa0510620:CDS | 40.0% | |
| AGGAATCCACCTGATTGTAT+CGG | - | chr3_4:59729049-59729068 | None:intergenic | 40.0% | |
| CAACAGTCCTATGTTTGATG+CGG | + | chr3_4:59729236-59729255 | Msa0510620:CDS | 40.0% | |
| TCCTAGTTGCTAAGGATTTG+GGG | + | chr3_4:59729293-59729312 | Msa0510620:intron | 40.0% | |
| ! | TACATGAGGTGTAAGAGTGT+TGG | - | chr3_4:59729667-59729686 | None:intergenic | 40.0% |
| GAAGCACATACTTCTACATG+AGG | - | chr3_4:59729681-59729700 | None:intergenic | 40.0% | |
| !! | TGCTGTCTAATTTTGAGGAG+GGG | - | chr3_4:59729974-59729993 | None:intergenic | 40.0% |
| !! | CTGCTGTCTAATTTTGAGGA+GGG | - | chr3_4:59729975-59729994 | None:intergenic | 40.0% |
| ! | TTTGGAAGTGCATCATCATC+TGG | + | chr3_4:59730005-59730024 | Msa0510620:CDS | 40.0% |
| GTACTATTATCGGTGAGCAT+TGG | + | chr3_4:59730114-59730133 | Msa0510620:three_prime_UTR | 40.0% | |
| GCTGTTACCCAGATTTCATT+AGG | + | chr3_4:59730201-59730220 | Msa0510620:three_prime_UTR | 40.0% | |
| GGGAAACTCCTAATGAAATC+TGG | - | chr3_4:59730212-59730231 | None:intergenic | 40.0% | |
| GGAAGAGGGAGCAATGAAAA+TGG | + | chr3_4:59727423-59727442 | Msa0510620:five_prime_UTR | 45.0% | |
| ! | CCTTTTTGCCCCTTTGTCAT+CGG | + | chr3_4:59727616-59727635 | Msa0510620:CDS | 45.0% |
| !! | TACTGGTACCGATGACAAAG+GGG | - | chr3_4:59727627-59727646 | None:intergenic | 45.0% |
| !! | CTACTGGTACCGATGACAAA+GGG | - | chr3_4:59727628-59727647 | None:intergenic | 45.0% |
| !! | ACTACTGGTACCGATGACAA+AGG | - | chr3_4:59727629-59727648 | None:intergenic | 45.0% |
| CTACCAGAAATTGCGGCATT+GGG | - | chr3_4:59727792-59727811 | None:intergenic | 45.0% | |
| ACAGCAACACAGACCCAAAT+CGG | - | chr3_4:59727933-59727952 | None:intergenic | 45.0% | |
| ! | GGGCTCTTTCCAAATTTTCC+AGG | + | chr3_4:59727976-59727995 | Msa0510620:CDS | 45.0% |
| TCCAGGAAAAAAGAACGTCC+TGG | + | chr3_4:59727993-59728012 | Msa0510620:CDS | 45.0% | |
| !!! | ACCAGGACGTTCTTTTTTCC+TGG | - | chr3_4:59727997-59728016 | None:intergenic | 45.0% |
| GCGTCTAACAAGATCAGCTA+CGG | - | chr3_4:59728021-59728040 | None:intergenic | 45.0% | |
| GTAGCTGATCTTGTTAGACG+CGG | + | chr3_4:59728020-59728039 | Msa0510620:CDS | 45.0% | |
| TAGACGCGGTCAATTGAGAT+CGG | + | chr3_4:59728034-59728053 | Msa0510620:CDS | 45.0% | |
| TGTGTGTGTGTGCGTATGTT+TGG | + | chr3_4:59728200-59728219 | Msa0510620:intron | 45.0% | |
| !! | TTAGTGCTGTTTGAGTCGTG+AGG | + | chr3_4:59728310-59728329 | Msa0510620:intron | 45.0% |
| CGTTCAACTCACTCTTACGT+AGG | + | chr3_4:59728559-59728578 | Msa0510620:intron | 45.0% | |
| ! | GCTTTTGCTAACCTTGACCA+AGG | - | chr3_4:59728863-59728882 | None:intergenic | 45.0% |
| CTCTTGAGTAAGTGTGACAG+GGG | - | chr3_4:59728926-59728945 | None:intergenic | 45.0% | |
| CCTCTTGAGTAAGTGTGACA+GGG | - | chr3_4:59728927-59728946 | None:intergenic | 45.0% | |
| TCCTCTTGAGTAAGTGTGAC+AGG | - | chr3_4:59728928-59728947 | None:intergenic | 45.0% | |
| CACACTTACTCAAGAGGAAC+AGG | + | chr3_4:59728930-59728949 | Msa0510620:CDS | 45.0% | |
| ACTTACTCAAGAGGAACAGG+CGG | + | chr3_4:59728933-59728952 | Msa0510620:CDS | 45.0% | |
| ! | CCCACAGTTTTCCTTAAGGA+AGG | + | chr3_4:59728997-59729016 | Msa0510620:CDS | 45.0% |
| GAACTGAGTCTCCTTCCTTA+AGG | - | chr3_4:59729011-59729030 | None:intergenic | 45.0% | |
| TTGATCCCGATACAATCAGG+TGG | + | chr3_4:59729040-59729059 | Msa0510620:CDS | 45.0% | |
| GGAATCCACCTGATTGTATC+GGG | - | chr3_4:59729048-59729067 | None:intergenic | 45.0% | |
| TCTGTAGAGGTGGTTGCAAA+GGG | - | chr3_4:59729081-59729100 | None:intergenic | 45.0% | |
| ATCTGTAGAGGTGGTTGCAA+AGG | - | chr3_4:59729082-59729101 | None:intergenic | 45.0% | |
| GCAACCACCTCTACAGATAT+CGG | + | chr3_4:59729084-59729103 | Msa0510620:CDS | 45.0% | |
| TGCTCAGCTTGAATACGGAA+AGG | - | chr3_4:59729153-59729172 | None:intergenic | 45.0% | |
| CCTCATGCTCAGCTTGAATA+CGG | - | chr3_4:59729158-59729177 | None:intergenic | 45.0% | |
| CCTAGTTGCTAAGGATTTGG+GGG | + | chr3_4:59729294-59729313 | Msa0510620:intron | 45.0% | |
| TTGCTAAGGATTTGGGGGTT+TGG | + | chr3_4:59729299-59729318 | Msa0510620:intron | 45.0% | |
| ! | ATCACTTGTGTTGATGCGTG+TGG | - | chr3_4:59729426-59729445 | None:intergenic | 45.0% |
| GCTTGACATTGAGACACTTG+TGG | + | chr3_4:59729458-59729477 | Msa0510620:intron | 45.0% | |
| ! | GACCCCTAATGAAGAGTGTA+TGG | + | chr3_4:59729616-59729635 | Msa0510620:intron | 45.0% |
| !! | CTGTCTAATTTTGAGGAGGG+GGG | - | chr3_4:59729972-59729991 | None:intergenic | 45.0% |
| !! | GCTGTCTAATTTTGAGGAGG+GGG | - | chr3_4:59729973-59729992 | None:intergenic | 45.0% |
| !! | CCTGCTGTCTAATTTTGAGG+AGG | - | chr3_4:59729976-59729995 | None:intergenic | 45.0% |
| CCTCCTCAAAATTAGACAGC+AGG | + | chr3_4:59729973-59729992 | Msa0510620:CDS | 45.0% | |
| TTAGTCTCGTAGCACGAAGT+GGG | - | chr3_4:59730232-59730251 | None:intergenic | 45.0% | |
| CCGATGACAAAGGGGCAAAA+AGG | - | chr3_4:59727619-59727638 | None:intergenic | 50.0% | |
| ! | CAGAAATTGCGGCATTGGGA+TGG | - | chr3_4:59727788-59727807 | None:intergenic | 50.0% |
| CATCCCAATGCCGCAATTTC+TGG | + | chr3_4:59727786-59727805 | Msa0510620:CDS | 50.0% | |
| CCTACCAGAAATTGCGGCAT+TGG | - | chr3_4:59727793-59727812 | None:intergenic | 50.0% | |
| !! | CCAATGCCGCAATTTCTGGT+AGG | + | chr3_4:59727790-59727809 | Msa0510620:intron | 50.0% |
| ACAAGATCAGCTACGGAACC+AGG | - | chr3_4:59728014-59728033 | None:intergenic | 50.0% | |
| AAAGTGGGTCACCAGGGATA+AGG | - | chr3_4:59728340-59728359 | None:intergenic | 50.0% | |
| CAGGGGAATCGGGTAAAAGT+GGG | - | chr3_4:59728355-59728374 | None:intergenic | 50.0% | |
| AAACATCCACCAGGGGAATC+GGG | - | chr3_4:59728365-59728384 | None:intergenic | 50.0% | |
| CAAACATCCACCAGGGGAAT+CGG | - | chr3_4:59728366-59728385 | None:intergenic | 50.0% | |
| TGAAGCCAAACATCCACCAG+GGG | - | chr3_4:59728372-59728391 | None:intergenic | 50.0% | |
| GTGAAGCCAAACATCCACCA+GGG | - | chr3_4:59728373-59728392 | None:intergenic | 50.0% | |
| AGTGAAGCCAAACATCCACC+AGG | - | chr3_4:59728374-59728393 | None:intergenic | 50.0% | |
| TAAGTGTGACAGGGGCTAAC+CGG | - | chr3_4:59728918-59728937 | None:intergenic | 50.0% | |
| CCCTGTCACACTTACTCAAG+AGG | + | chr3_4:59728924-59728943 | Msa0510620:CDS | 50.0% | |
| ! | GCGTCCCACAGTTTTCCTTA+AGG | + | chr3_4:59728993-59729012 | Msa0510620:CDS | 50.0% |
| GTATCGGGATCAACATCTGG+AGG | - | chr3_4:59729033-59729052 | None:intergenic | 50.0% | |
| GTTGCAAAGGGATGATTCGC+AGG | - | chr3_4:59729069-59729088 | None:intergenic | 50.0% | |
| CTCACCGATATCTGTAGAGG+TGG | - | chr3_4:59729091-59729110 | None:intergenic | 50.0% | |
| CACCTCTACAGATATCGGTG+AGG | + | chr3_4:59729089-59729108 | Msa0510620:CDS | 50.0% | |
| GTCCTCACCGATATCTGTAG+AGG | - | chr3_4:59729094-59729113 | None:intergenic | 50.0% | |
| CCGTATTCAAGCTGAGCATG+AGG | + | chr3_4:59729155-59729174 | Msa0510620:CDS | 50.0% | |
| GGCTTCAAGCTTTCTCTGCA+GGG | - | chr3_4:59729181-59729200 | None:intergenic | 50.0% | |
| CCCCCAAATCCTTAGCAACT+AGG | - | chr3_4:59729297-59729316 | None:intergenic | 50.0% | |
| !!! | GGATTTGGGGGTTTGGCTTT+TGG | + | chr3_4:59729306-59729325 | Msa0510620:intron | 50.0% |
| AATCTGCCATGGGAGTCGAA+TGG | - | chr3_4:59729903-59729922 | None:intergenic | 50.0% | |
| ! | CGGCCTGCTGTCTAATTTTG+AGG | - | chr3_4:59729979-59729998 | None:intergenic | 50.0% |
| GACAGCAGGCCGAATAACTT+TGG | + | chr3_4:59729987-59730006 | Msa0510620:CDS | 50.0% | |
| ! | GTTAGTCTCGTAGCACGAAG+TGG | - | chr3_4:59730233-59730252 | None:intergenic | 50.0% |
| CGTGAGGCTAACCTTATCCC+TGG | + | chr3_4:59728326-59728345 | Msa0510620:intron | 55.0% | |
| CGGGTAAAAGTGGGTCACCA+GGG | - | chr3_4:59728346-59728365 | None:intergenic | 55.0% | |
| TCGGGTAAAAGTGGGTCACC+AGG | - | chr3_4:59728347-59728366 | None:intergenic | 55.0% | |
| CCAGGGGAATCGGGTAAAAG+TGG | - | chr3_4:59728356-59728375 | None:intergenic | 55.0% | |
| !! | CCACTTTTACCCGATTCCCC+TGG | + | chr3_4:59728353-59728372 | Msa0510620:intron | 55.0% |
| ! | CTTTTACCCGATTCCCCTGG+TGG | + | chr3_4:59728356-59728375 | Msa0510620:intron | 55.0% |
| ! | CGATTCCCCTGGTGGATGTT+TGG | + | chr3_4:59728364-59728383 | Msa0510620:intron | 55.0% |
| AACAGGCGGTTCACCAGAGA+AGG | + | chr3_4:59728947-59728966 | Msa0510620:CDS | 55.0% | |
| ACGCACGTGATCTCCTTCTC+TGG | - | chr3_4:59728963-59728982 | None:intergenic | 55.0% | |
| GGAGATCACGTGCGTATCAG+TGG | + | chr3_4:59728968-59728987 | Msa0510620:CDS | 55.0% | |
| GGGCTTCAAGCTTTCTCTGC+AGG | - | chr3_4:59729182-59729201 | None:intergenic | 55.0% | |
| GAGAGACCATTCGACTCCCA+TGG | + | chr3_4:59729894-59729913 | Msa0510620:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 59727398 | 59730261 | 59727398 | ID=Msa0510620;Name=Msa0510620 |
| chr3_4 | mRNA | 59727398 | 59730261 | 59727398 | ID=Msa0510620-mRNA-1;Parent=Msa0510620;Name=Msa0510620-mRNA-1;_AED=0.09;_eAED=0.09;_QI=86|0.75|0.8|1|1|1|5|209|352 |
| chr3_4 | exon | 59727398 | 59727528 | 59727398 | ID=Msa0510620-mRNA-1:exon:14123;Parent=Msa0510620-mRNA-1 |
| chr3_4 | exon | 59727616 | 59727807 | 59727616 | ID=Msa0510620-mRNA-1:exon:14124;Parent=Msa0510620-mRNA-1 |
| chr3_4 | exon | 59727903 | 59728069 | 59727903 | ID=Msa0510620-mRNA-1:exon:14125;Parent=Msa0510620-mRNA-1 |
| chr3_4 | exon | 59728822 | 59729266 | 59728822 | ID=Msa0510620-mRNA-1:exon:14126;Parent=Msa0510620-mRNA-1 |
| chr3_4 | exon | 59729843 | 59730261 | 59729843 | ID=Msa0510620-mRNA-1:exon:14127;Parent=Msa0510620-mRNA-1 |
| chr3_4 | five_prime_UTR | 59727398 | 59727483 | 59727398 | ID=Msa0510620-mRNA-1:five_prime_utr;Parent=Msa0510620-mRNA-1 |
| chr3_4 | CDS | 59727484 | 59727528 | 59727484 | ID=Msa0510620-mRNA-1:cds;Parent=Msa0510620-mRNA-1 |
| chr3_4 | CDS | 59727616 | 59727807 | 59727616 | ID=Msa0510620-mRNA-1:cds;Parent=Msa0510620-mRNA-1 |
| chr3_4 | CDS | 59727903 | 59728069 | 59727903 | ID=Msa0510620-mRNA-1:cds;Parent=Msa0510620-mRNA-1 |
| chr3_4 | CDS | 59728822 | 59729266 | 59728822 | ID=Msa0510620-mRNA-1:cds;Parent=Msa0510620-mRNA-1 |
| chr3_4 | CDS | 59729843 | 59730052 | 59729843 | ID=Msa0510620-mRNA-1:cds;Parent=Msa0510620-mRNA-1 |
| chr3_4 | three_prime_UTR | 59730053 | 59730261 | 59730053 | ID=Msa0510620-mRNA-1:three_prime_utr;Parent=Msa0510620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
