AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0118700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0118700 MtrunA17_Chr1g0176251 90.451 377 19 2 17 376 16 392 0.0 676
Msa0118700 MtrunA17_Chr4g0072191 29.723 397 227 13 21 376 25 410 1.32e-38 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0118700 AT3G11945.1 74.923 323 64 2 71 376 64 386 4.18e-170 480
Msa0118700 AT3G11945.2 75.080 313 61 2 81 376 81 393 7.85e-164 464
Msa0118700 AT2G18950.1 34.539 304 170 8 96 376 95 392 2.34e-39 144
Msa0118700 AT2G18950.2 35.088 228 121 7 96 300 95 318 1.94e-26 108

Find 79 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAATTCCATGTGGGAATTA+TGG 0.191858 1_3:+41841476 None:intergenic
TCGACCTTTGCTACAAAATT+AGG 0.197774 1_3:-41838029 Msa0118700:CDS
GGTGTTGTTGACAGGCTTTC+AGG 0.223817 1_3:-41837845 Msa0118700:intron
AACATTTCTTTCCTTGGTTC+TGG 0.229462 1_3:-41837999 Msa0118700:CDS
CCAACCCGTTTGGAAGGTTT+TGG 0.233322 1_3:+41841405 None:intergenic
TCCAAACGGGTTGGTTCAAT+TGG 0.288132 1_3:-41841396 Msa0118700:CDS
CCAGATTTCATAATGTTTCA+TGG 0.298266 1_3:-41835584 Msa0118700:three_prime_UTR
AATAGATAGTACCAAGAAAA+AGG 0.306759 1_3:+41838778 None:intergenic
CATATAAATTGCTGCCAATA+TGG 0.320084 1_3:+41837950 None:intergenic
AGTGTTGCTTCAGCTCCTTA+TGG 0.337423 1_3:-41841541 Msa0118700:exon
TGCAGTGAAGTTGGAGCTGC+TGG 0.338973 1_3:-41839785 Msa0118700:CDS
ACAACATACCCTGATGGAAA+TGG 0.357216 1_3:+41841308 None:intergenic
CCATGAAACATTATGAAATC+TGG 0.365199 1_3:+41835584 None:intergenic
CCCTATCGTTTACAGTGCTT+TGG 0.371902 1_3:-41839582 Msa0118700:intron
TGTGGGAATGGTTATATAGT+TGG 0.378890 1_3:-41839476 Msa0118700:CDS
CCCAATTGAACCAACCCGTT+TGG 0.383983 1_3:+41841395 None:intergenic
GTTCGGAACATTTCTTTCCT+TGG 0.385731 1_3:-41838005 Msa0118700:CDS
ACTATCCGTGGTACAGCATT+AGG 0.405007 1_3:-41839692 Msa0118700:CDS
GAACTATGTTGTTACCATAT+TGG 0.406125 1_3:-41837964 Msa0118700:CDS
ATGTTGCAGGAAGCAATATC+AGG 0.410158 1_3:-41835914 Msa0118700:intron
ATAATAAGAAATGCTGCAAC+AGG 0.417997 1_3:+41838726 None:intergenic
TCTAAAACTTTGTCAGCAAA+TGG 0.421719 1_3:+41839752 None:intergenic
TTGCTACAAAATTAGGAGTT+CGG 0.428806 1_3:-41838022 Msa0118700:CDS
CTACGATCTCCTTCAACATC+TGG 0.428942 1_3:+41838220 None:intergenic
GCCGATCAATAAGACAAATT+CGG 0.431898 1_3:-41835765 Msa0118700:three_prime_UTR
CAGGATTCTATCGATTCATA+TGG 0.434066 1_3:-41835895 Msa0118700:CDS
CTTGTCTTGAAAGCACTCTC+TGG 0.434396 1_3:-41839515 Msa0118700:CDS
CAACATACCCTGATGGAAAT+GGG 0.440583 1_3:+41841309 None:intergenic
TTTGCTCTGATTTGTGGGAA+TGG 0.449050 1_3:-41839488 Msa0118700:CDS
AACCCCAAAACCTTCCAAAC+GGG 0.469584 1_3:-41841409 Msa0118700:CDS
GTTGACAGGCTTTCAGGAGA+TGG 0.469985 1_3:-41837839 Msa0118700:intron
AGTGTAAACCCATTTCCATC+AGG 0.473401 1_3:-41841317 Msa0118700:CDS
CCAAACGGGTTGGTTCAATT+GGG 0.474511 1_3:-41841395 Msa0118700:CDS
GGTTGTGGATTTAGCTGAAG+TGG 0.474821 1_3:+41841428 None:intergenic
TCTAGCAAACCGTGCTACCT+TGG 0.477091 1_3:-41835835 Msa0118700:exon
ACTGCTACATTTCTGTATGC+AGG 0.480891 1_3:+41835800 None:intergenic
AAAGATCTTCCAGATGTTGA+AGG 0.481104 1_3:-41838229 Msa0118700:CDS
AGCATTTCTTATTATTGCTA+CGG 0.484068 1_3:-41838718 Msa0118700:intron
TCTATTCTGTTCCTCCGCTT+AGG 0.485340 1_3:-41838761 Msa0118700:CDS
TCCGAATTTGTCTTATTGAT+CGG 0.485458 1_3:+41835764 None:intergenic
GGATCCTAGTGCTTTAAAGA+TGG 0.491455 1_3:-41835744 Msa0118700:three_prime_UTR
TGCTTCAAGCTTGATTTACC+AGG 0.498689 1_3:-41837790 Msa0118700:intron
TTGACTGTAGGATTGAACTT+TGG 0.504190 1_3:-41838831 Msa0118700:CDS
CAACCCCAAAACCTTCCAAA+CGG 0.507098 1_3:-41841410 Msa0118700:CDS
CGAACCATCTTTAAAGCACT+AGG 0.509656 1_3:+41835740 None:intergenic
AGCAGCTCCAACTTCACTGC+AGG 0.512238 1_3:+41839787 None:intergenic
GTTGTGGATTTAGCTGAAGT+GGG 0.513391 1_3:+41841429 None:intergenic
AGAACTCAAATCTGATAAAG+TGG 0.515201 1_3:-41839541 Msa0118700:CDS
AAGAAGTAGAGAGCTCCATA+AGG 0.520759 1_3:+41841526 None:intergenic
TGAAGGTGTTCTTGCTGATG+TGG 0.522835 1_3:+41841596 None:intergenic
GGCAGCAATTTATATGCCAC+AGG 0.528952 1_3:-41837943 Msa0118700:intron
GAAGGTGTTCTTGCTGATGT+GGG 0.543264 1_3:+41841597 None:intergenic
ATAAACATGTATGATTATGA+TGG 0.545178 1_3:+41841367 None:intergenic
GCAGCTGGCCTCTTGACTGT+AGG 0.546042 1_3:-41838843 Msa0118700:CDS
TACGCCACTAGAGCTGCTCT+TGG 0.549187 1_3:-41838549 Msa0118700:CDS
ATTGAACCAACCCGTTTGGA+AGG 0.553199 1_3:+41841399 None:intergenic
AAGTCCAAGAGCAGCTCTAG+TGG 0.553924 1_3:+41838545 None:intergenic
GACACACAAACGTTTGATGA+AGG 0.556344 1_3:+41841579 None:intergenic
ATCTACCTGCAGCTCTCCTG+TGG 0.565966 1_3:-41838302 Msa0118700:intron
ATCAATCAAATATATGACAT+TGG 0.566344 1_3:-41839452 Msa0118700:CDS
CCAAAACCTTCCAAACGGGT+TGG 0.579066 1_3:-41841405 Msa0118700:CDS
TTGCAGGCCTGCAGTGAAGT+TGG 0.583928 1_3:-41839794 Msa0118700:intron
GAAGCAAATATTGCATGAGC+TGG 0.584720 1_3:+41837807 None:intergenic
GCCGTTGTATACAATTCTCA+TGG 0.586685 1_3:+41835606 None:intergenic
AGCACGGTTTGCTAGATGAA+AGG 0.593888 1_3:+41835842 None:intergenic
CACATTCCATAATTCCCACA+TGG 0.597325 1_3:-41841482 Msa0118700:CDS
GTGGATTTAGCTGAAGTGGG+TGG 0.600338 1_3:+41841432 None:intergenic
GCTGTACCACGGATAGTATG+TGG 0.609127 1_3:+41839698 None:intergenic
GTGTAAACCCATTTCCATCA+GGG 0.626735 1_3:-41841316 Msa0118700:intron
TTAAGGCCACATACTATCCG+TGG 0.626803 1_3:-41839704 Msa0118700:CDS
AAGGTGTTCTTGCTGATGTG+GGG 0.629637 1_3:+41841598 None:intergenic
AGTTCAATCCTACAGTCAAG+AGG 0.630775 1_3:+41838835 None:intergenic
TCAGCAAAATTCCAGAACCA+AGG 0.633793 1_3:+41837988 None:intergenic
AAGCGTTTCATCCTAAGCGG+AGG 0.662812 1_3:+41838750 None:intergenic
CAGATGTTGAAGGAGATCGT+AGG 0.666387 1_3:-41838219 Msa0118700:intron
GCCATGAGAATTGTATACAA+CGG 0.669269 1_3:-41835607 Msa0118700:three_prime_UTR
AAGTGACTTATGCAGGTACG+AGG 0.680664 1_3:-41838597 Msa0118700:intron
GGAAAGCGTTTCATCCTAAG+CGG 0.694499 1_3:+41838747 None:intergenic
AAGAACCTAATGCTGTACCA+CGG 0.731271 1_3:+41839687 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTTTTTTTGAAAATATT+TGG - chr1_3:41836341-41836360 Msa0118700:intron 10.0%
!! TATAGTTTATATTAATTTAC+CGG - chr1_3:41836570-41836589 Msa0118700:intron 10.0%
!!! TATTTAATGTTATTTTTCAA+TGG + chr1_3:41840669-41840688 None:intergenic 10.0%
!!! AGTATTAACAATTTTTTTAA+TGG - chr1_3:41841512-41841531 Msa0118700:CDS 10.0%
!!! TTTTTTTTGAAAATATTTGG+TGG - chr1_3:41836344-41836363 Msa0118700:intron 15.0%
!!! TTTTTTTGAAAATATTTGGT+GGG - chr1_3:41836345-41836364 Msa0118700:intron 15.0%
!! ATTAAAACCTACTTATATAA+CGG - chr1_3:41836776-41836795 Msa0118700:intron 15.0%
!! TGAAATATAAGAATAACTTA+GGG + chr1_3:41838242-41838261 None:intergenic 15.0%
!! ATGAAATATAAGAATAACTT+AGG + chr1_3:41838243-41838262 None:intergenic 15.0%
!!! TATTCTTATATTTCATTTTC+AGG - chr1_3:41838247-41838266 Msa0118700:CDS 15.0%
!!! ATTCTTATATTTCATTTTCA+GGG - chr1_3:41838248-41838267 Msa0118700:CDS 15.0%
!! ATAACAGAAAATGATTAATA+AGG + chr1_3:41839497-41839516 None:intergenic 15.0%
!! TCTGTTATAAAATATTTGTT+CGG - chr1_3:41839509-41839528 Msa0118700:CDS 15.0%
!!! GATTTATTTTCTTATATTTC+AGG - chr1_3:41839718-41839737 Msa0118700:CDS 15.0%
!! ATCAATGATATAATCAATAA+GGG - chr1_3:41840167-41840186 Msa0118700:intron 15.0%
!! GAATGATAAAAATAAATCAA+TGG + chr1_3:41840743-41840762 None:intergenic 15.0%
!! ATAAACATGTATGATTATGA+TGG + chr1_3:41835827-41835846 None:intergenic 20.0%
!! ATAGCTCACTATATTTATTT+AGG - chr1_3:41836195-41836214 Msa0118700:intron 20.0%
!!! AGCAATGTATTTTAATTACT+TGG - chr1_3:41836446-41836465 Msa0118700:intron 20.0%
!!! ATTTGTCTATTTGTCTTTTT+AGG + chr1_3:41837091-41837110 None:intergenic 20.0%
!!! TAATCACTAAATATTTTCTG+TGG - chr1_3:41837169-41837188 Msa0118700:intron 20.0%
!! AAAAAAATTGAAGTAACCAA+CGG + chr1_3:41837293-41837312 None:intergenic 20.0%
!! ATCAATCAAATATATGACAT+TGG - chr1_3:41837739-41837758 Msa0118700:intron 20.0%
!!! ACTGTACAATTTTTCATTTT+AGG - chr1_3:41837906-41837925 Msa0118700:intron 20.0%
!! TGAAAAATTGAACTAAAATG+AGG + chr1_3:41837960-41837979 None:intergenic 20.0%
!! TGTATCATGTATATGTAATA+TGG - chr1_3:41839105-41839124 Msa0118700:intron 20.0%
!! TGCATGTAATAATTAATTAC+AGG - chr1_3:41839130-41839149 Msa0118700:intron 20.0%
!!! TAAGGTTTATTTTCAAATGT+AGG + chr1_3:41839316-41839335 None:intergenic 20.0%
!!! ATTTTTGAAAAATAAAGACG+TGG + chr1_3:41839663-41839682 None:intergenic 20.0%
!! AGAAAAAGCAAATTATACAA+AGG - chr1_3:41839751-41839770 Msa0118700:CDS 20.0%
!!! ATATGTTATCATCTTTTGTA+TGG - chr1_3:41839777-41839796 Msa0118700:CDS 20.0%
!! TAAAACAAACAGAAGAAAAA+TGG + chr1_3:41840019-41840038 None:intergenic 20.0%
!! ATTGATTATATCATTGATGT+GGG + chr1_3:41840165-41840184 None:intergenic 20.0%
!!! TATTGATTATATCATTGATG+TGG + chr1_3:41840166-41840185 None:intergenic 20.0%
!! CATCAATGATATAATCAATA+AGG - chr1_3:41840166-41840185 Msa0118700:intron 20.0%
!! TCAATGATATAATCAATAAG+GGG - chr1_3:41840168-41840187 Msa0118700:intron 20.0%
!! ATTGATTATATCATTGAAGA+GGG + chr1_3:41840363-41840382 None:intergenic 20.0%
!!! TATTGATTATATCATTGAAG+AGG + chr1_3:41840364-41840383 None:intergenic 20.0%
!!! ATTCACAAAATTCATACTTT+TGG - chr1_3:41840759-41840778 Msa0118700:intron 20.0%
!! ATTAATTAGAAGTAAGACTT+GGG + chr1_3:41840850-41840869 None:intergenic 20.0%
!! AATTAATTAGAAGTAAGACT+TGG + chr1_3:41840851-41840870 None:intergenic 20.0%
!!! TTAGCTTTGTGATTTTTTCA+AGG - chr1_3:41835944-41835963 Msa0118700:intron 25.0%
!!! TAGCTTTGTGATTTTTTCAA+GGG - chr1_3:41835945-41835964 Msa0118700:intron 25.0%
! AAAGGTTGAGAATGAATAAT+GGG - chr1_3:41836397-41836416 Msa0118700:intron 25.0%
! TTTAATTACTTGGATCTTTC+AGG - chr1_3:41836456-41836475 Msa0118700:intron 25.0%
!!! AACGAAATTTTTTATCGAAG+TGG - chr1_3:41837008-41837027 Msa0118700:intron 25.0%
!!! TCAATGCTCAGATTTTTTAT+GGG + chr1_3:41837231-41837250 None:intergenic 25.0%
!!! TTCAATGCTCAGATTTTTTA+TGG + chr1_3:41837232-41837251 None:intergenic 25.0%
! TTGAATCAAAACCAAAAGTA+GGG + chr1_3:41837352-41837371 None:intergenic 25.0%
! ATTGAATCAAAACCAAAAGT+AGG + chr1_3:41837353-41837372 None:intergenic 25.0%
!!! TAGATTTTAAAGATGCATTC+TGG - chr1_3:41837458-41837477 Msa0118700:intron 25.0%
! AGTGCTATCATAATGTATTT+GGG + chr1_3:41837983-41838002 None:intergenic 25.0%
! TAGTGCTATCATAATGTATT+TGG + chr1_3:41837984-41838003 None:intergenic 25.0%
!! TATTAGTCTATGAATCTGTT+TGG - chr1_3:41838002-41838021 Msa0118700:CDS 25.0%
! TCAAATAAGTCAATTCAAAC+AGG - chr1_3:41838216-41838235 Msa0118700:intron 25.0%
! GAGTAAAGCGAAAAAATAAA+AGG + chr1_3:41838387-41838406 None:intergenic 25.0%
! AATAGATAGTACCAAGAAAA+AGG + chr1_3:41838416-41838435 None:intergenic 25.0%
! AGCATTTCTTATTATTGCTA+CGG - chr1_3:41838473-41838492 Msa0118700:intron 25.0%
! AATAAACCTTATGTAAGTTG+TGG - chr1_3:41839325-41839344 Msa0118700:intron 25.0%
! AATATAGAACTCTCAAGTAT+TGG + chr1_3:41839446-41839465 None:intergenic 25.0%
! TAAAATATTTGTTCGGAGAA+TGG - chr1_3:41839516-41839535 Msa0118700:CDS 25.0%
! TGGAACTTCTTAGTATAATT+AGG - chr1_3:41839564-41839583 Msa0118700:CDS 25.0%
!!! TGTTTTGAAAACTCAAAAGT+TGG - chr1_3:41839824-41839843 Msa0118700:intron 25.0%
! TGATGTATATCATATGTAGT+CGG + chr1_3:41839877-41839896 None:intergenic 25.0%
! ACATATGATATACATCAGTT+AGG - chr1_3:41839880-41839899 Msa0118700:intron 25.0%
! AGAGAGAAAATTTAGTCAAA+AGG - chr1_3:41839965-41839984 Msa0118700:intron 25.0%
! TCTCATAAACTAAAACAAAC+AGG - chr1_3:41840133-41840152 Msa0118700:intron 25.0%
! CAATGATATAATCAATAAGG+GGG - chr1_3:41840169-41840188 Msa0118700:intron 25.0%
! TAAAAGAGAGCTTATGAAAA+CGG + chr1_3:41841137-41841156 None:intergenic 25.0%
!! TAGTTTTTCGAATTCCATGT+GGG + chr1_3:41835726-41835745 None:intergenic 30.0%
TTAGCTGATTGGTGAAAAAA+AGG - chr1_3:41836047-41836066 Msa0118700:intron 30.0%
GTATTATTACTACTACGAAC+CGG - chr1_3:41836217-41836236 Msa0118700:intron 30.0%
TAACCATAGTCACATAATTG+CGG + chr1_3:41836316-41836335 None:intergenic 30.0%
AGTTCATGGAAAATTCAGAA+AGG - chr1_3:41836379-41836398 Msa0118700:intron 30.0%
GAAAGGTTGAGAATGAATAA+TGG - chr1_3:41836396-41836415 Msa0118700:intron 30.0%
AAGGTTGAGAATGAATAATG+GGG - chr1_3:41836398-41836417 Msa0118700:intron 30.0%
TTTGCTTCCGTTATATAAGT+AGG + chr1_3:41836786-41836805 None:intergenic 30.0%
CCATTACCATTACATTTCAA+TGG + chr1_3:41836827-41836846 None:intergenic 30.0%
CCATTGAAATGTAATGGTAA+TGG - chr1_3:41836824-41836843 Msa0118700:intron 30.0%
!! GTAATGGTAATGGTTTCAAA+TGG - chr1_3:41836834-41836853 Msa0118700:intron 30.0%
! ATCTCAATTTTCCTTGCTAA+TGG + chr1_3:41836986-41837005 None:intergenic 30.0%
!! AACACTTTTTACCCTACTTT+TGG - chr1_3:41837338-41837357 Msa0118700:intron 30.0%
GTTTAAATTGAAATGCTTGC+AGG - chr1_3:41837381-41837400 Msa0118700:intron 30.0%
! TCTAAAACTTTGTCAGCAAA+TGG + chr1_3:41837442-41837461 None:intergenic 30.0%
!! ATGCATTCTGGAGATTTTTA+AGG - chr1_3:41837470-41837489 Msa0118700:intron 30.0%
AGAACTCAAATCTGATAAAG+TGG - chr1_3:41837650-41837669 Msa0118700:intron 30.0%
AATAAGCTGAAAACAGTTGA+TGG - chr1_3:41838125-41838144 Msa0118700:intron 30.0%
!!! ATTTTTTCGCTTTACTCCTT+CGG - chr1_3:41838390-41838409 Msa0118700:intron 30.0%
ATAATAAGAAATGCTGCAAC+AGG + chr1_3:41838468-41838487 None:intergenic 30.0%
! ACAGTTAGTAAAGTACCATT+TGG - chr1_3:41838554-41838573 Msa0118700:CDS 30.0%
AAAGTTGTGATAAAAACCAC+AGG + chr1_3:41838908-41838927 None:intergenic 30.0%
! TTTCGTAACATTTTTCGCAT+TGG - chr1_3:41838925-41838944 Msa0118700:intron 30.0%
! TTTGGAATCATGTTGCATTA+AGG - chr1_3:41839000-41839019 Msa0118700:intron 30.0%
TTGGAATCATGTTGCATTAA+GGG - chr1_3:41839001-41839020 Msa0118700:intron 30.0%
ATACACCAACAAATAAAGAG+TGG + chr1_3:41839090-41839109 None:intergenic 30.0%
! AACTCCTAATTTTGTAGCAA+AGG + chr1_3:41839169-41839188 None:intergenic 30.0%
TTGCTACAAAATTAGGAGTT+CGG - chr1_3:41839169-41839188 Msa0118700:intron 30.0%
GAACTATGTTGTTACCATAT+TGG - chr1_3:41839227-41839246 Msa0118700:intron 30.0%
CATATAAATTGCTGCCAATA+TGG + chr1_3:41839244-41839263 None:intergenic 30.0%
GTTACAAGAATCGAAAATCA+AGG + chr1_3:41839851-41839870 None:intergenic 30.0%
GATGTATATCATATGTAGTC+GGG + chr1_3:41839876-41839895 None:intergenic 30.0%
! TTCTGGTAGTTACATCTTTT+AGG - chr1_3:41839922-41839941 Msa0118700:intron 30.0%
! TCTGGTAGTTACATCTTTTA+GGG - chr1_3:41839923-41839942 Msa0118700:intron 30.0%
GAGAAAATTTAGTCAAAAGG+AGG - chr1_3:41839968-41839987 Msa0118700:intron 30.0%
!!! CTTCTGTTTGTTTTAGATTC+TGG - chr1_3:41840024-41840043 Msa0118700:intron 30.0%
! CCTTTAGTAAAAAGTGCATT+GGG + chr1_3:41840076-41840095 None:intergenic 30.0%
! TCCTTTAGTAAAAAGTGCAT+TGG + chr1_3:41840077-41840096 None:intergenic 30.0%
GAAGCTGTACTTAATTCTAT+TGG - chr1_3:41840095-41840114 Msa0118700:intron 30.0%
CTTGTGTAAAAAACAAGGTA+AGG + chr1_3:41840269-41840288 None:intergenic 30.0%
!!! TACCTTGTTTTTTACACAAG+AGG - chr1_3:41840269-41840288 Msa0118700:intron 30.0%
AACCTCTTGTGTAAAAAACA+AGG + chr1_3:41840274-41840293 None:intergenic 30.0%
! AATGTAAGTGTTGTAGATAG+CGG + chr1_3:41840592-41840611 None:intergenic 30.0%
! ATATTGATTAGTTCAAGTCG+AGG - chr1_3:41840686-41840705 Msa0118700:intron 30.0%
AAGATAAAACAAAGTGAAGC+TGG - chr1_3:41841030-41841049 Msa0118700:intron 30.0%
! TTTTCATAAGCTATCATGGA+TGG - chr1_3:41841067-41841086 Msa0118700:intron 30.0%
GACACTTAATCAAGCAATAT+TGG + chr1_3:41841249-41841268 None:intergenic 30.0%
! TCCGAATTTGTCTTATTGAT+CGG + chr1_3:41841430-41841449 None:intergenic 30.0%
CCATGAAACATTATGAAATC+TGG + chr1_3:41841610-41841629 None:intergenic 30.0%
CCAGATTTCATAATGTTTCA+TGG - chr1_3:41841607-41841626 Msa0118700:five_prime_UTR 30.0%
!! GTAGTTTTTCGAATTCCATG+TGG + chr1_3:41835727-41835746 None:intergenic 35.0%
ACAAAAACAACATACCCTGA+TGG + chr1_3:41835892-41835911 None:intergenic 35.0%
TATTGGAAAAACCAGCGAAA+AGG - chr1_3:41836012-41836031 Msa0118700:intron 35.0%
AAATGAATCACCATGAGTTG+AGG - chr1_3:41836092-41836111 Msa0118700:intron 35.0%
AGAAGAACATGAACAAAGAG+TGG - chr1_3:41836123-41836142 Msa0118700:intron 35.0%
!! GGGTTTTGATATGTAGTTCA+TGG - chr1_3:41836365-41836384 Msa0118700:intron 35.0%
GTGGAACATAGAGAGATTAT+AGG - chr1_3:41836605-41836624 Msa0118700:intron 35.0%
TAGAATTGAAGCTTGAACTC+TGG - chr1_3:41836666-41836685 Msa0118700:intron 35.0%
CGTTGTCCATTGAAATGTAA+TGG - chr1_3:41836818-41836837 Msa0118700:intron 35.0%
!!! ATTTTTTATGGGTATCACGC+GGG + chr1_3:41837220-41837239 None:intergenic 35.0%
!!! GATTTTTTATGGGTATCACG+CGG + chr1_3:41837221-41837240 None:intergenic 35.0%
TCGTCGAATTTATTGATGCT+AGG - chr1_3:41837314-41837333 Msa0118700:intron 35.0%
!! GTCTTTTTGCTCTGATTTGT+GGG - chr1_3:41837698-41837717 Msa0118700:intron 35.0%
TGTGGGAATGGTTATATAGT+TGG - chr1_3:41837715-41837734 Msa0118700:intron 35.0%
TTAGCAAGAAATGTGCAAGA+GGG + chr1_3:41837855-41837874 None:intergenic 35.0%
ATTAGCAAGAAATGTGCAAG+AGG + chr1_3:41837856-41837875 None:intergenic 35.0%
CTTATTTCAGTAAGCTCTTC+AGG + chr1_3:41838111-41838130 None:intergenic 35.0%
AAGCACTTGTGAGATTGTTT+GGG + chr1_3:41838180-41838199 None:intergenic 35.0%
TAAGCACTTGTGAGATTGTT+TGG + chr1_3:41838181-41838200 None:intergenic 35.0%
TTGACTGTAGGATTGAACTT+TGG - chr1_3:41838360-41838379 Msa0118700:intron 35.0%
CAAAGATTGGGAAAAAAAGG+AGG + chr1_3:41838509-41838528 None:intergenic 35.0%
GTGCAAAGATTGGGAAAAAA+AGG + chr1_3:41838512-41838531 None:intergenic 35.0%
GTCAATCTTGTTCATCCAAA+TGG + chr1_3:41838572-41838591 None:intergenic 35.0%
! CGAGGTTTTCTACTTAACTT+TGG - chr1_3:41838612-41838631 Msa0118700:intron 35.0%
AGTGGCTATTGTTTGATTAG+AGG - chr1_3:41838752-41838771 Msa0118700:CDS 35.0%
CTATTGTTTGATTAGAGGCT+CGG - chr1_3:41838757-41838776 Msa0118700:CDS 35.0%
ACAAGAACAAACGCATAAGT+TGG + chr1_3:41838867-41838886 None:intergenic 35.0%
AAAGATCTTCCAGATGTTGA+AGG - chr1_3:41838962-41838981 Msa0118700:intron 35.0%
ATTAAGGGTTGCAAGTTCAT+TGG - chr1_3:41839016-41839035 Msa0118700:intron 35.0%
! TGCTACCACTCTTTATTTGT+TGG - chr1_3:41839082-41839101 Msa0118700:intron 35.0%
TCGACCTTTGCTACAAAATT+AGG - chr1_3:41839162-41839181 Msa0118700:intron 35.0%
AACATTTCTTTCCTTGGTTC+TGG - chr1_3:41839192-41839211 Msa0118700:intron 35.0%
GACAAGTTAATATTCACCTG+TGG + chr1_3:41839267-41839286 None:intergenic 35.0%
ACAACACCACAACTTACATA+AGG + chr1_3:41839334-41839353 None:intergenic 35.0%
! CTGGTAGTTACATCTTTTAG+GGG - chr1_3:41839924-41839943 Msa0118700:intron 35.0%
!! TTACATCTTTTAGGGGTTGA+AGG - chr1_3:41839931-41839950 Msa0118700:intron 35.0%
!!! CTGTTTGTTTTAGATTCTGG+TGG - chr1_3:41840027-41840046 Msa0118700:intron 35.0%
!! CCCAATGCACTTTTTACTAA+AGG - chr1_3:41840073-41840092 Msa0118700:intron 35.0%
CGTAAAATACACCAAATGGT+GGG + chr1_3:41840243-41840262 None:intergenic 35.0%
TTCTTAGTCACACAAAACAG+TGG - chr1_3:41840443-41840462 Msa0118700:intron 35.0%
GTATTTACATGGCAGATCTT+TGG - chr1_3:41840549-41840568 Msa0118700:intron 35.0%
GCTATCTACAACACTTACAT+TGG - chr1_3:41840591-41840610 Msa0118700:intron 35.0%
TCTATCTTACTGGAAGAGAA+GGG + chr1_3:41840645-41840664 None:intergenic 35.0%
! TTTCAATGGCTCTATCTTAC+TGG + chr1_3:41840655-41840674 None:intergenic 35.0%
! AGTTTAGTTTCTCTTATGCG+AGG + chr1_3:41840787-41840806 None:intergenic 35.0%
!!! TGGGCTTTCTAAAGTACTTT+TGG + chr1_3:41840831-41840850 None:intergenic 35.0%
TGTTTATCCAAGCAGAAACA+GGG + chr1_3:41840940-41840959 None:intergenic 35.0%
!! GCTGTTTTCATAAGCTATCA+TGG - chr1_3:41841063-41841082 Msa0118700:intron 35.0%
!! CAGGATTCTATCGATTCATA+TGG - chr1_3:41841296-41841315 Msa0118700:intron 35.0%
GCCGATCAATAAGACAAATT+CGG - chr1_3:41841426-41841445 Msa0118700:CDS 35.0%
GCCATGAGAATTGTATACAA+CGG - chr1_3:41841584-41841603 Msa0118700:five_prime_UTR 35.0%
GACACACAAACGTTTGATGA+AGG + chr1_3:41835615-41835634 None:intergenic 40.0%
AAGAAGTAGAGAGCTCCATA+AGG + chr1_3:41835668-41835687 None:intergenic 40.0%
CACATTCCATAATTCCCACA+TGG - chr1_3:41835709-41835728 Msa0118700:intron 40.0%
CGAATTCCATGTGGGAATTA+TGG + chr1_3:41835718-41835737 None:intergenic 40.0%
GTTGTGGATTTAGCTGAAGT+GGG + chr1_3:41835765-41835784 None:intergenic 40.0%
AGTGTAAACCCATTTCCATC+AGG - chr1_3:41835874-41835893 Msa0118700:CDS 40.0%
GTGTAAACCCATTTCCATCA+GGG - chr1_3:41835875-41835894 Msa0118700:CDS 40.0%
CAACATACCCTGATGGAAAT+GGG + chr1_3:41835885-41835904 None:intergenic 40.0%
ACAACATACCCTGATGGAAA+TGG + chr1_3:41835886-41835905 None:intergenic 40.0%
TTCAAGGGAGAATTGCGAAT+TGG - chr1_3:41835960-41835979 Msa0118700:intron 40.0%
!! ATTGGTGTGAGTACCGAATT+CGG - chr1_3:41835978-41835997 Msa0118700:intron 40.0%
! ACAAAGCATGGTTAGCTGAT+TGG - chr1_3:41836036-41836055 Msa0118700:intron 40.0%
TCGCGGTAACAAGAAGAATT+CGG + chr1_3:41836269-41836288 None:intergenic 40.0%
TCACATAATTGCGGTTGTTC+CGG + chr1_3:41836307-41836326 None:intergenic 40.0%
CAACCGCAATTATGTGACTA+TGG - chr1_3:41836310-41836329 Msa0118700:intron 40.0%
ACGGAAGCAAAACGAAATGA+CGG - chr1_3:41836795-41836814 Msa0118700:intron 40.0%
ACAGAGAAATGCAGCTGATA+CGG + chr1_3:41836926-41836945 None:intergenic 40.0%
ATGTATTGCGACCATTAGCA+AGG - chr1_3:41836972-41836991 Msa0118700:intron 40.0%
! TTTTATCGAAGTGGTCCACT+CGG - chr1_3:41837017-41837036 Msa0118700:intron 40.0%
ACTAATAGCGATCGTTAGCA+AGG - chr1_3:41837041-41837060 Msa0118700:intron 40.0%
GTAACCAACGGAATAATCAG+TGG + chr1_3:41837281-41837300 None:intergenic 40.0%
AAGAACCTAATGCTGTACCA+CGG + chr1_3:41837507-41837526 None:intergenic 40.0%
!! CCAAAGCACTGTAAACGATA+GGG + chr1_3:41837612-41837631 None:intergenic 40.0%
!! ACCAAAGCACTGTAAACGAT+AGG + chr1_3:41837613-41837632 None:intergenic 40.0%
!! GGTCTTTTTGCTCTGATTTG+TGG - chr1_3:41837697-41837716 Msa0118700:intron 40.0%
! TTTGCTCTGATTTGTGGGAA+TGG - chr1_3:41837703-41837722 Msa0118700:intron 40.0%
TAGCAAGAAATGTGCAAGAG+GGG + chr1_3:41837854-41837873 None:intergenic 40.0%
ATCTTTCTGTCCAATCTGCA+TGG - chr1_3:41838304-41838323 Msa0118700:intron 40.0%
TAACCAAGAACCATGCAGAT+TGG + chr1_3:41838317-41838336 None:intergenic 40.0%
GTTATATTCTTTGCAGCAGC+TGG - chr1_3:41838333-41838352 Msa0118700:intron 40.0%
AGTTCAATCCTACAGTCAAG+AGG + chr1_3:41838359-41838378 None:intergenic 40.0%
CAGTTAGCAGTGCAAAGATT+GGG + chr1_3:41838521-41838540 None:intergenic 40.0%
ACAGTTAGCAGTGCAAAGAT+TGG + chr1_3:41838522-41838541 None:intergenic 40.0%
TTGACAGAAGTGACTTATGC+AGG - chr1_3:41838587-41838606 Msa0118700:intron 40.0%
! AACGCATAAGTTGGAGACAA+TGG + chr1_3:41838858-41838877 None:intergenic 40.0%
! AGGAGATCGTAGGTATGTTT+TGG - chr1_3:41838982-41839001 Msa0118700:intron 40.0%
GTTCGGAACATTTCTTTCCT+TGG - chr1_3:41839186-41839205 Msa0118700:intron 40.0%
TCAGCAAAATTCCAGAACCA+AGG + chr1_3:41839206-41839225 None:intergenic 40.0%
!! TAAGTTGTGGTGTTGTTGAC+AGG - chr1_3:41839338-41839357 Msa0118700:intron 40.0%
GAAGCAAATATTGCATGAGC+TGG + chr1_3:41839387-41839406 None:intergenic 40.0%
TGCTTCAAGCTTGATTTACC+AGG - chr1_3:41839401-41839420 Msa0118700:intron 40.0%
AGAACAACCTTTGCTTGTTC+TGG - chr1_3:41839905-41839924 Msa0118700:intron 40.0%
GTAACTACCAGAACAAGCAA+AGG + chr1_3:41839915-41839934 None:intergenic 40.0%
CCACTTAGAGTAATCAAGCA+AGG + chr1_3:41839996-41840015 None:intergenic 40.0%
CCTTGCTTGATTACTCTAAG+TGG - chr1_3:41839993-41840012 Msa0118700:intron 40.0%
GCGTAAAATACACCAAATGG+TGG + chr1_3:41840244-41840263 None:intergenic 40.0%
GCTGCGTAAAATACACCAAA+TGG + chr1_3:41840247-41840266 None:intergenic 40.0%
! AAGAGGTTGTTTCCATGACT+TGG - chr1_3:41840286-41840305 Msa0118700:intron 40.0%
TATAAAGCTCCTGTCATGGA+AGG - chr1_3:41840399-41840418 Msa0118700:intron 40.0%
TTAGTCACACAAAACAGTGG+TGG - chr1_3:41840446-41840465 Msa0118700:intron 40.0%
ATCCCTTCACAAATTGCTTG+TGG + chr1_3:41840496-41840515 None:intergenic 40.0%
ACAAGCAATTTGTGAAGGGA+TGG - chr1_3:41840495-41840514 Msa0118700:intron 40.0%
!! TAAGTGTTGTAGATAGCGGA+AGG + chr1_3:41840588-41840607 None:intergenic 40.0%
CTCAATGTAACAGTTGGAGT+TGG + chr1_3:41840618-41840637 None:intergenic 40.0%
CAACTCCAACTGTTACATTG+AGG - chr1_3:41840616-41840635 Msa0118700:intron 40.0%
CTATCTTACTGGAAGAGAAG+GGG + chr1_3:41840644-41840663 None:intergenic 40.0%
CTCTATCTTACTGGAAGAGA+AGG + chr1_3:41840646-41840665 None:intergenic 40.0%
! TTGATTAGTTCAAGTCGAGG+TGG - chr1_3:41840689-41840708 Msa0118700:intron 40.0%
! TGATTAGTTCAAGTCGAGGT+GGG - chr1_3:41840690-41840709 Msa0118700:intron 40.0%
!! TTTTGGCTGTTGATCAAGGT+GGG + chr1_3:41840814-41840833 None:intergenic 40.0%
!! GTACTTTTGGCTGTTGATCA+AGG + chr1_3:41840818-41840837 None:intergenic 40.0%
TTTCAAGACACCATCTTTGC+TGG - chr1_3:41840883-41840902 Msa0118700:intron 40.0%
TTCAAGACACCATCTTTGCT+GGG - chr1_3:41840884-41840903 Msa0118700:intron 40.0%
! CATCTTTGCTGGGTTTTTGT+GGG - chr1_3:41840894-41840913 Msa0118700:intron 40.0%
GTTTATCCAAGCAGAAACAG+GGG + chr1_3:41840939-41840958 None:intergenic 40.0%
CTGTTTATCCAAGCAGAAAC+AGG + chr1_3:41840941-41840960 None:intergenic 40.0%
GCTATCATGGATGGCTTATA+TGG - chr1_3:41841076-41841095 Msa0118700:intron 40.0%
GTGTCTGAACTATATGTTGC+AGG - chr1_3:41841264-41841283 Msa0118700:intron 40.0%
ATGTTGCAGGAAGCAATATC+AGG - chr1_3:41841277-41841296 Msa0118700:intron 40.0%
! GCAATTTTTCCAAGGTAGCA+CGG + chr1_3:41841368-41841387 None:intergenic 40.0%
! GCAGGTTTGCAATTTTTCCA+AGG + chr1_3:41841376-41841395 None:intergenic 40.0%
ACTGCTACATTTCTGTATGC+AGG + chr1_3:41841394-41841413 None:intergenic 40.0%
!! GGATCCTAGTGCTTTAAAGA+TGG - chr1_3:41841447-41841466 Msa0118700:CDS 40.0%
!! CGAACCATCTTTAAAGCACT+AGG + chr1_3:41841454-41841473 None:intergenic 40.0%
GCCGTTGTATACAATTCTCA+TGG + chr1_3:41841588-41841607 None:intergenic 40.0%
! AAGGTGTTCTTGCTGATGTG+GGG + chr1_3:41835596-41835615 None:intergenic 45.0%
!! GAAGGTGTTCTTGCTGATGT+GGG + chr1_3:41835597-41835616 None:intergenic 45.0%
!! TGAAGGTGTTCTTGCTGATG+TGG + chr1_3:41835598-41835617 None:intergenic 45.0%
!! AGTGTTGCTTCAGCTCCTTA+TGG - chr1_3:41835650-41835669 Msa0118700:three_prime_UTR 45.0%
GGTTGTGGATTTAGCTGAAG+TGG + chr1_3:41835766-41835785 None:intergenic 45.0%
!!! TTTGGAAGGTTTTGGGGTTG+TGG + chr1_3:41835781-41835800 None:intergenic 45.0%
CAACCCCAAAACCTTCCAAA+CGG - chr1_3:41835781-41835800 Msa0118700:three_prime_UTR 45.0%
AACCCCAAAACCTTCCAAAC+GGG - chr1_3:41835782-41835801 Msa0118700:three_prime_UTR 45.0%
! AACCCGTTTGGAAGGTTTTG+GGG + chr1_3:41835787-41835806 None:intergenic 45.0%
! CAACCCGTTTGGAAGGTTTT+GGG + chr1_3:41835788-41835807 None:intergenic 45.0%
ATTGAACCAACCCGTTTGGA+AGG + chr1_3:41835795-41835814 None:intergenic 45.0%
!! TCCAAACGGGTTGGTTCAAT+TGG - chr1_3:41835795-41835814 Msa0118700:three_prime_UTR 45.0%
!! CCAAACGGGTTGGTTCAATT+GGG - chr1_3:41835796-41835815 Msa0118700:three_prime_UTR 45.0%
!! TTGGTGTGAGTACCGAATTC+GGG - chr1_3:41835979-41835998 Msa0118700:intron 45.0%
! AGTACCGAATTCGGGTACTT+CGG - chr1_3:41835987-41836006 Msa0118700:intron 45.0%
! CATGCTTTGTACCTTTTCGC+TGG + chr1_3:41836026-41836045 None:intergenic 45.0%
! CAGCGAAAAGGTACAAAGCA+TGG - chr1_3:41836024-41836043 Msa0118700:intron 45.0%
ATATACAGCTTCGTACGCTC+CGG + chr1_3:41836239-41836258 None:intergenic 45.0%
! AGCCGCAATGTCAAGGTTTT+TGG - chr1_3:41836877-41836896 Msa0118700:intron 45.0%
! GCCGCAATGTCAAGGTTTTT+GGG - chr1_3:41836878-41836897 Msa0118700:intron 45.0%
CCCCAAAAACCTTGACATTG+CGG + chr1_3:41836882-41836901 None:intergenic 45.0%
! CCGCAATGTCAAGGTTTTTG+GGG - chr1_3:41836879-41836898 Msa0118700:intron 45.0%
GGACTTTGCAACTGCAATTG+TGG - chr1_3:41836900-41836919 Msa0118700:intron 45.0%
ATCGACAGTAAAAACGTCGC+TGG - chr1_3:41837116-41837135 Msa0118700:intron 45.0%
TTAAGGCCACATACTATCCG+TGG - chr1_3:41837487-41837506 Msa0118700:intron 45.0%
ACTATCCGTGGTACAGCATT+AGG - chr1_3:41837499-41837518 Msa0118700:intron 45.0%
AGCTGCAAGCAACACATTGA+TGG + chr1_3:41837550-41837569 None:intergenic 45.0%
CCCTATCGTTTACAGTGCTT+TGG - chr1_3:41837609-41837628 Msa0118700:intron 45.0%
!! CTTGTCTTGAAAGCACTCTC+TGG - chr1_3:41837676-41837695 Msa0118700:intron 45.0%
AGGGGACGAAAGAAAGAGAA+AGG + chr1_3:41837836-41837855 None:intergenic 45.0%
CCTGCGGCTATAGGTAAATA+AGG + chr1_3:41838282-41838301 None:intergenic 45.0%
! CCTTATTTACCTATAGCCGC+AGG - chr1_3:41838279-41838298 Msa0118700:CDS 45.0%
TTGGACAGAAAGATCTCCTG+CGG + chr1_3:41838298-41838317 None:intergenic 45.0%
TGTCCAATCTGCATGGTTCT+TGG - chr1_3:41838311-41838330 Msa0118700:intron 45.0%
! TACTCCTTCGGCCTTTTTCT+TGG - chr1_3:41838402-41838421 Msa0118700:intron 45.0%
AGTACCAAGAAAAAGGCCGA+AGG + chr1_3:41838409-41838428 None:intergenic 45.0%
TCTATTCTGTTCCTCCGCTT+AGG - chr1_3:41838430-41838449 Msa0118700:intron 45.0%
!! GGAAAGCGTTTCATCCTAAG+CGG + chr1_3:41838447-41838466 None:intergenic 45.0%
AAGTGACTTATGCAGGTACG+AGG - chr1_3:41838594-41838613 Msa0118700:intron 45.0%
!! CTCTTGGACTTGCTTTTGAG+TGG - chr1_3:41838658-41838677 Msa0118700:intron 45.0%
!! TTGGACTTGCTTTTGAGTGG+AGG - chr1_3:41838661-41838680 Msa0118700:intron 45.0%
GTTGCTTCGTACTTCGCAAT+TGG - chr1_3:41838703-41838722 Msa0118700:intron 45.0%
TGAACAACTGAGATCACGAG+TGG - chr1_3:41838734-41838753 Msa0118700:CDS 45.0%
CTACGATCTCCTTCAACATC+TGG + chr1_3:41838974-41838993 None:intergenic 45.0%
CAGATGTTGAAGGAGATCGT+AGG - chr1_3:41838972-41838991 Msa0118700:intron 45.0%
GGCAGCAATTTATATGCCAC+AGG - chr1_3:41839248-41839267 Msa0118700:intron 45.0%
GATTTACCAGGTTCGATGAG+CGG - chr1_3:41839413-41839432 Msa0118700:intron 45.0%
ATTAATCCGCTCATCGAACC+TGG + chr1_3:41839422-41839441 None:intergenic 45.0%
CTACTGAGTTGTGTGTTGTC+TGG - chr1_3:41839544-41839563 Msa0118700:CDS 45.0%
!! CATCTTTTAGGGGTTGAAGG+AGG - chr1_3:41839934-41839953 Msa0118700:intron 45.0%
TCACGTTACTGAAAGGTCAC+GGG + chr1_3:41840313-41840332 None:intergenic 45.0%
GTCACGTTACTGAAAGGTCA+CGG + chr1_3:41840314-41840333 None:intergenic 45.0%
! GGTGTTGTCACGTTACTGAA+AGG + chr1_3:41840320-41840339 None:intergenic 45.0%
ACACCTTTACTGTTGTGCCA+AGG - chr1_3:41840335-41840354 Msa0118700:intron 45.0%
TATCATTGAAGAGGGAGCCT+TGG + chr1_3:41840355-41840374 None:intergenic 45.0%
CGTCTATAAAGCTCCTGTCA+TGG - chr1_3:41840395-41840414 Msa0118700:intron 45.0%
ACACAAAACAGTGGTGGCTA+TGG - chr1_3:41840452-41840471 Msa0118700:intron 45.0%
CCTTCACAAATTGCTTGTGG+CGG + chr1_3:41840493-41840512 None:intergenic 45.0%
CGCCACAAGCAATTTGTGAA+GGG - chr1_3:41840491-41840510 Msa0118700:intron 45.0%
GCCATGTAAATACGCCATTG+CGG + chr1_3:41840542-41840561 None:intergenic 45.0%
!! CTTTTGGCTGTTGATCAAGG+TGG + chr1_3:41840815-41840834 None:intergenic 45.0%
CCACAAAAACCCAGCAAAGA+TGG + chr1_3:41840896-41840915 None:intergenic 45.0%
! CCATCTTTGCTGGGTTTTTG+TGG - chr1_3:41840893-41840912 Msa0118700:intron 45.0%
!! AGCACGGTTTGCTAGATGAA+AGG + chr1_3:41841352-41841371 None:intergenic 45.0%
GTGGATTTAGCTGAAGTGGG+TGG + chr1_3:41835762-41835781 None:intergenic 50.0%
! CCAACCCGTTTGGAAGGTTT+TGG + chr1_3:41835789-41835808 None:intergenic 50.0%
CCAAAACCTTCCAAACGGGT+TGG - chr1_3:41835786-41835805 Msa0118700:three_prime_UTR 50.0%
CCCAATTGAACCAACCCGTT+TGG + chr1_3:41835799-41835818 None:intergenic 50.0%
! TACGCCGAAGTACCCGAATT+CGG + chr1_3:41835994-41836013 None:intergenic 50.0%
ATTCGGGTACTTCGGCGTAT+TGG - chr1_3:41835995-41836014 Msa0118700:intron 50.0%
CTCACTCAGTCCTCAACTCA+TGG + chr1_3:41836105-41836124 None:intergenic 50.0%
! CGATCGCTATTAGTACCGAG+TGG + chr1_3:41837035-41837054 None:intergenic 50.0%
! GCAGCCACTGATTATTCCGT+TGG - chr1_3:41837274-41837293 Msa0118700:intron 50.0%
GCTGTACCACGGATAGTATG+TGG + chr1_3:41837496-41837515 None:intergenic 50.0%
GAAAGATCTCCTGCGGCTAT+AGG + chr1_3:41838291-41838310 None:intergenic 50.0%
AAGCGTTTCATCCTAAGCGG+AGG + chr1_3:41838444-41838463 None:intergenic 50.0%
! AAGTCCAAGAGCAGCTCTAG+TGG + chr1_3:41838649-41838668 None:intergenic 50.0%
AAAAACCACAGGAGAGCTGC+AGG + chr1_3:41838897-41838916 None:intergenic 50.0%
!! GGTGTTGTTGACAGGCTTTC+AGG - chr1_3:41839346-41839365 Msa0118700:intron 50.0%
GTTGACAGGCTTTCAGGAGA+TGG - chr1_3:41839352-41839371 Msa0118700:intron 50.0%
TAATCAATAAGGGGGCAGCC+CGG - chr1_3:41840177-41840196 Msa0118700:intron 50.0%
ACTAAAGCTCCCGCATACGT+AGG - chr1_3:41840203-41840222 Msa0118700:intron 50.0%
CTAAAGCTCCCGCATACGTA+GGG - chr1_3:41840204-41840223 Msa0118700:intron 50.0%
TTCCCATACCCTACGTATGC+GGG + chr1_3:41840215-41840234 None:intergenic 50.0%
CTTCCCATACCCTACGTATG+CGG + chr1_3:41840216-41840235 None:intergenic 50.0%
GCATACGTAGGGTATGGGAA+GGG - chr1_3:41840215-41840234 Msa0118700:intron 50.0%
CATACGTAGGGTATGGGAAG+GGG - chr1_3:41840216-41840235 Msa0118700:intron 50.0%
GAGCCTTGGCACAACAGTAA+AGG + chr1_3:41840341-41840360 None:intergenic 50.0%
CTCCTGTCATGGAAGGTCTA+GGG - chr1_3:41840406-41840425 Msa0118700:intron 50.0%
CCGCCACAAGCAATTTGTGA+AGG - chr1_3:41840490-41840509 Msa0118700:intron 50.0%
AAATACGCCATTGCGGCCTA+TGG + chr1_3:41840535-41840554 None:intergenic 50.0%
GCCGCAATGGCGTATTTACA+TGG - chr1_3:41840538-41840557 Msa0118700:intron 50.0%
GGGAGCCTCAATGTAACAGT+TGG + chr1_3:41840624-41840643 None:intergenic 50.0%
TTAGTTCAAGTCGAGGTGGG+TGG - chr1_3:41840693-41840712 Msa0118700:intron 50.0%
! ATGAGTTTTCCCCCTCAGGT+TGG + chr1_3:41840720-41840739 None:intergenic 50.0%
! ATGGATGAGTTTTCCCCCTC+AGG + chr1_3:41840724-41840743 None:intergenic 50.0%
! TGCTGGGTTTTTGTGGGTCA+AGG - chr1_3:41840900-41840919 Msa0118700:intron 50.0%
TCTAGCAAACCGTGCTACCT+TGG - chr1_3:41841356-41841375 Msa0118700:CDS 50.0%
GGTACGCATACGGGTATTCG+CGG + chr1_3:41836286-41836305 None:intergenic 55.0%
GCGAATACCCGTATGCGTAC+CGG - chr1_3:41836285-41836304 Msa0118700:intron 55.0%
GGTTGTTCCGGTACGCATAC+GGG + chr1_3:41836295-41836314 None:intergenic 55.0%
CGGTTGTTCCGGTACGCATA+CGG + chr1_3:41836296-41836315 None:intergenic 55.0%
CAGTTGCAGCCGCAATGTCA+AGG - chr1_3:41836870-41836889 Msa0118700:intron 55.0%
TTGCAGGCCTGCAGTGAAGT+TGG - chr1_3:41837397-41837416 Msa0118700:intron 55.0%
AGCAGCTCCAACTTCACTGC+AGG + chr1_3:41837407-41837426 None:intergenic 55.0%
TGCAGTGAAGTTGGAGCTGC+TGG - chr1_3:41837406-41837425 Msa0118700:intron 55.0%
TACGCCACTAGAGCTGCTCT+TGG - chr1_3:41838642-41838661 Msa0118700:intron 55.0%
ATCTACCTGCAGCTCTCCTG+TGG - chr1_3:41838889-41838908 Msa0118700:intron 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + chr1_3:41840199-41840218 None:intergenic 55.0%
CTCCCGCATACGTAGGGTAT+GGG - chr1_3:41840210-41840229 Msa0118700:intron 55.0%
CGCATACGTAGGGTATGGGA+AGG - chr1_3:41840214-41840233 Msa0118700:intron 55.0%
AAGGTCACGGGTCCAAGTCA+TGG + chr1_3:41840301-41840320 None:intergenic 55.0%
GCTCCTGTCATGGAAGGTCT+AGG - chr1_3:41840405-41840424 Msa0118700:intron 55.0%
GTCCCTAGACCTTCCATGAC+AGG + chr1_3:41840411-41840430 None:intergenic 55.0%
! GTGGGTCAAGGCATCTTTGC+CGG - chr1_3:41840912-41840931 Msa0118700:intron 55.0%
TCCAAGCAGAAACAGGGGAC+CGG + chr1_3:41840934-41840953 None:intergenic 55.0%
! GCAGCTGGCCTCTTGACTGT+AGG - chr1_3:41838348-41838367 Msa0118700:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG + chr1_3:41840198-41840217 None:intergenic 60.0%
GCTCCCGCATACGTAGGGTA+TGG - chr1_3:41840209-41840228 Msa0118700:intron 60.0%
TGGGAAGGGGTCCCACCATT+TGG - chr1_3:41840229-41840248 Msa0118700:intron 60.0%
TTGTGAAGGGATGGCCGCCA+TGG - chr1_3:41840504-41840523 Msa0118700:intron 60.0%
GGCCTATGGCACTTCCATGG+CGG + chr1_3:41840521-41840540 None:intergenic 60.0%
TGCGGCCTATGGCACTTCCA+TGG + chr1_3:41840524-41840543 None:intergenic 60.0%
!! GGAAGTGCCATAGGCCGCAA+TGG - chr1_3:41840525-41840544 Msa0118700:intron 60.0%
AGGTGGGTGGACCAACCTGA+GGG - chr1_3:41840706-41840725 Msa0118700:intron 60.0%
TTACCGGACACGTGTGCGCG+TGG - chr1_3:41836586-41836605 Msa0118700:intron 65.0%
GTTCCACGCGCACACGTGTC+CGG + chr1_3:41836592-41836611 None:intergenic 65.0%
!! GGCCGCCATGGAAGTGCCAT+AGG - chr1_3:41840516-41840535 Msa0118700:intron 65.0%
GAGGTGGGTGGACCAACCTG+AGG - chr1_3:41840705-41840724 Msa0118700:intron 65.0%
GGTGGGTGGACCAACCTGAG+GGG - chr1_3:41840707-41840726 Msa0118700:intron 65.0%
GTGGGTGGACCAACCTGAGG+GGG - chr1_3:41840708-41840727 Msa0118700:intron 65.0%
!! GCCGGTCCCCTGTTTCTGCT+TGG - chr1_3:41840930-41840949 Msa0118700:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 41835577 41841636 41835577 ID=Msa0118700;Name=Msa0118700
chr1_3 mRNA 41835577 41841636 41835577 ID=Msa0118700-mRNA-1;Parent=Msa0118700;Name=Msa0118700-mRNA-1;_AED=0.21;_eAED=0.21;_QI=92|0.9|0.81|1|0.8|0.72|11|241|376
chr1_3 exon 41835577 41835699 41835577 ID=Msa0118700-mRNA-1:exon:12702;Parent=Msa0118700-mRNA-1
chr1_3 exon 41835735 41835927 41835735 ID=Msa0118700-mRNA-1:exon:12701;Parent=Msa0118700-mRNA-1
chr1_3 exon 41837441 41837473 41837441 ID=Msa0118700-mRNA-1:exon:12700;Parent=Msa0118700-mRNA-1
chr1_3 exon 41837791 41837853 41837791 ID=Msa0118700-mRNA-1:exon:12699;Parent=Msa0118700-mRNA-1
chr1_3 exon 41837944 41838061 41837944 ID=Msa0118700-mRNA-1:exon:12698;Parent=Msa0118700-mRNA-1
chr1_3 exon 41838220 41838312 41838220 ID=Msa0118700-mRNA-1:exon:12697;Parent=Msa0118700-mRNA-1
chr1_3 exon 41838531 41838604 41838531 ID=Msa0118700-mRNA-1:exon:12696;Parent=Msa0118700-mRNA-1
chr1_3 exon 41838719 41838864 41838719 ID=Msa0118700-mRNA-1:exon:12695;Parent=Msa0118700-mRNA-1
chr1_3 exon 41839414 41839589 41839414 ID=Msa0118700-mRNA-1:exon:12694;Parent=Msa0118700-mRNA-1
chr1_3 exon 41839686 41839810 41839686 ID=Msa0118700-mRNA-1:exon:12693;Parent=Msa0118700-mRNA-1
chr1_3 exon 41841317 41841636 41841317 ID=Msa0118700-mRNA-1:exon:12692;Parent=Msa0118700-mRNA-1
chr1_3 five_prime_UTR 41841545 41841636 41841545 ID=Msa0118700-mRNA-1:five_prime_utr;Parent=Msa0118700-mRNA-1
chr1_3 CDS 41841317 41841544 41841317 ID=Msa0118700-mRNA-1:cds;Parent=Msa0118700-mRNA-1
chr1_3 CDS 41839686 41839810 41839686 ID=Msa0118700-mRNA-1:cds;Parent=Msa0118700-mRNA-1
chr1_3 CDS 41839414 41839589 41839414 ID=Msa0118700-mRNA-1:cds;Parent=Msa0118700-mRNA-1
chr1_3 CDS 41838719 41838864 41838719 ID=Msa0118700-mRNA-1:cds;Parent=Msa0118700-mRNA-1
chr1_3 CDS 41838531 41838604 41838531 ID=Msa0118700-mRNA-1:cds;Parent=Msa0118700-mRNA-1
chr1_3 CDS 41838220 41838312 41838220 ID=Msa0118700-mRNA-1:cds;Parent=Msa0118700-mRNA-1
chr1_3 CDS 41837944 41838061 41837944 ID=Msa0118700-mRNA-1:cds;Parent=Msa0118700-mRNA-1
chr1_3 CDS 41837791 41837853 41837791 ID=Msa0118700-mRNA-1:cds;Parent=Msa0118700-mRNA-1
chr1_3 CDS 41837441 41837473 41837441 ID=Msa0118700-mRNA-1:cds;Parent=Msa0118700-mRNA-1
chr1_3 CDS 41835853 41835927 41835853 ID=Msa0118700-mRNA-1:cds;Parent=Msa0118700-mRNA-1
chr1_3 three_prime_UTR 41835735 41835852 41835735 ID=Msa0118700-mRNA-1:three_prime_utr;Parent=Msa0118700-mRNA-1
chr1_3 three_prime_UTR 41835577 41835699 41835577 ID=Msa0118700-mRNA-1:three_prime_utr;Parent=Msa0118700-mRNA-1
Gene Sequence

>Msa0118700

ATGGAGCTCTCTACTTCTTCTTCATCTTCATCTCTTCATTCACATTCCATAATTCCCACATGGAATTCGAAAAACTACTACTCTTTCAAACCACCCACTTCAGCTAAATCCACAACCCCAAAACCTTCCAAACGGGTTGGTTCAATTGGGCTATACCATCATAATCATACATGTTTATCTGCTCATGTTTCAAAACTGAAGAGACAGTGTAAACCCATTTCCATCAGGGCCTGCAGTGAAGTTGGAGCTGCTGGATCTGATCGTCCATTTGCTGACAAAGTTTTAGATTTTAAAGATGCATTCTGGAGATTTTTAAGGCCACATACTATCCGTGGTACAGCATTAGGTTCTTTTGCTTTGGTGTCAAGAGCTTTGATCGAGAACTCAAATCTGATAAAGTGGTCACTTGTCTTGAAAGCACTCTCTGGTCTTTTTGCTCTGATTTGTGGGAATGGTTATATAGTTGGCATCAATCAAATATATGACATTGGCATTGACAAGTATGATGCAGACAGACATATAGATAATTCAGCTGGCCTCTTGACTGTAGGATTGAACTTTGGACCTTTTATTTTTTCGCTTTACTCCTTCGGCCTTTTTCTTGGTACTATCTATTCTGTTCCTCCGCTTAGGATGAAACGCTTTCCTGTTGCAGCATTTCTTATTATTGCTACGGTACGAGGTTTTCTACTTAACTTTGGTGTGTACTACGCCACTAGAGCTGCTCTTGGACTTGCTTTTGAGTGGAGCTCTCCTGTGGTTTTTATCACAACTTTCGTAACATTTTTCGCATTGGTAATTGCTATAACAAAAGATCTTCCAGATGTTGAAGGAGATCGTAGGTATCAGATATCGACCTTTGCTACAAAATTAGGAGTTCGGAACATTTCTTTCCTTGGTTCTGGAATTTTGCTGATGAACTATGTTGTTACCATATTGGCAGCAATTTATATGCCACAGGCTTTCAGGAGATGGTTACTGATACCAGCTCATGCAATATTTGCTTCAAGCTTGATTTACCAGGTGCAGATATTAGAAAAAGCAAATTATACAAAGGAAGCAATATCAGGATTCTATCGATTCATATGGAATCTGTTCTATGCTGAGTATGCATTATTTCCTTTCATCTAG

Protein sequence

>Msa0118700

MELSTSSSSSSLHSHSIIPTWNSKNYYSFKPPTSAKSTTPKPSKRVGSIGLYHHNHTCLSAHVSKLKRQCKPISIRACSEVGAAGSDRPFADKVLDFKDAFWRFLRPHTIRGTALGSFALVSRALIENSNLIKWSLVLKALSGLFALICGNGYIVGINQIYDIGIDKYDADRHIDNSAGLLTVGLNFGPFIFSLYSFGLFLGTIYSVPPLRMKRFPVAAFLIIATVRGFLLNFGVYYATRAALGLAFEWSSPVVFITTFVTFFALVIAITKDLPDVEGDRRYQISTFATKLGVRNISFLGSGILLMNYVVTILAAIYMPQAFRRWLLIPAHAIFASSLIYQVQILEKANYTKEAISGFYRFIWNLFYAEYALFPFI*