AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0511330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511330 MtrunA17_Chr3g0117701 97.653 767 18 0 28 794 1 767 0.0 1538
Msa0511330 MtrunA17_Chr4g0059101 71.773 581 162 2 203 781 88 668 0.0 852
Msa0511330 MtrunA17_Chr6g0450741 65.054 558 180 5 240 793 152 698 0.0 735
Msa0511330 MtrunA17_Chr6g0450741 50.862 116 46 3 44 149 8 122 7.64e-20 94.7
Msa0511330 MtrunA17_Chr8g0388631 62.402 508 190 1 279 785 64 571 0.0 687
Msa0511330 MtrunA17_Chr8g0346601 61.386 505 193 1 280 784 52 554 0.0 659
Msa0511330 MtrunA17_Chr1g0184181 26.523 509 358 6 272 773 83 582 7.85e-43 165
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511330 AT1G27500.2 65.993 544 173 4 248 783 114 653 0.0 730
Msa0511330 AT1G27500.2 49.383 81 41 0 81 161 25 105 5.88e-16 82.8
Msa0511330 AT1G27500.1 65.993 544 173 4 248 783 103 642 0.0 729
Msa0511330 AT1G27500.1 49.383 81 41 0 81 161 14 94 6.19e-16 82.4
Msa0511330 AT3G27960.1 63.419 544 188 3 256 788 114 657 0.0 709
Msa0511330 AT3G27960.1 42.424 132 52 5 40 170 4 112 7.72e-12 69.3
Msa0511330 AT3G27960.3 63.419 544 188 3 256 788 114 657 0.0 709
Msa0511330 AT3G27960.3 42.424 132 52 5 40 170 4 112 7.72e-12 69.3
Msa0511330 AT4G10840.1 57.391 575 226 6 222 785 25 591 0.0 663
Msa0511330 AT3G27960.2 63.617 481 164 3 256 725 114 594 0.0 635
Msa0511330 AT3G27960.2 42.424 132 52 5 40 170 4 112 6.10e-12 69.7
Msa0511330 AT4G10840.2 56.699 515 204 6 222 725 25 531 0.0 585
Msa0511330 AT2G31240.1 26.916 509 359 6 272 773 101 603 7.25e-40 156

Find 223 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGTCCAGAGGCATATTT+TGG 0.153258 3_4:+60839171 Msa0511330:CDS
AAAGAATCAAGTTTCTTTAA+AGG 0.155018 3_4:-60840857 None:intergenic
CTATATACTCCAAGCGTTTC+AGG 0.160309 3_4:-60840081 None:intergenic
TTGATTCTTTGATGCTTTAC+AGG 0.208801 3_4:+60840870 Msa0511330:three_prime_UTR
ATTTGTTGTCACAGGTATTC+TGG 0.218490 3_4:+60838001 Msa0511330:intron
TTGACGAGTGTTATACTTAA+TGG 0.224583 3_4:+60840955 Msa0511330:three_prime_UTR
CAGATGCCACTTCGGCTTCT+TGG 0.257689 3_4:-60839444 None:intergenic
TGGTATTGCTCTTAATCAAC+TGG 0.262779 3_4:+60839963 Msa0511330:CDS
AGAGGAGGTGGAGGTGGAGG+GGG 0.264395 3_4:+60838376 Msa0511330:CDS
TTATACTTAATGGGGTAAAA+TGG 0.275982 3_4:+60840965 Msa0511330:three_prime_UTR
GGAAGAGGAGGTGGAGGTGG+AGG 0.285387 3_4:+60838373 Msa0511330:CDS
ATGAAACTGTTTGAGAAGTT+TGG 0.293874 3_4:+60838911 Msa0511330:CDS
TGAGGAAGCAAAGAGTGTTT+TGG 0.304839 3_4:+60840035 Msa0511330:CDS
AATGAGTCGCGTTGAGAATT+CGG 0.307148 3_4:+60838775 Msa0511330:CDS
GAGAAGAAATCATCCTTCTT+TGG 0.307647 3_4:+60839943 Msa0511330:CDS
TGCGAGCGTCGCTGTCAAAA+AGG 0.312632 3_4:-60840796 None:intergenic
ACCCCATCATCCTGGAAATT+AGG 0.314654 3_4:-60838188 None:intergenic
AAGGTTGAGTGATTTGTTAA+AGG 0.318973 3_4:+60840730 Msa0511330:CDS
TGACGAGTGTTATACTTAAT+GGG 0.321421 3_4:+60840956 Msa0511330:three_prime_UTR
CTTTAAAGGAAATCCTTATC+AGG 0.322334 3_4:-60840843 None:intergenic
CGGAATTGCACCATTTGGTT+GGG 0.324212 3_4:+60838324 Msa0511330:CDS
TCAGCAGCTTCTTCAATAGA+TGG 0.329233 3_4:-60839325 None:intergenic
ATCACAAAACTTCGTGCTAT+TGG 0.329949 3_4:+60839919 Msa0511330:CDS
TGGATGATTCTCTCCTTTGC+TGG 0.330223 3_4:-60839557 None:intergenic
TGTTGACTTTCCCCGATATC+AGG 0.331061 3_4:-60839049 None:intergenic
AATGGAAGAGGAGGTGGAGG+TGG 0.332230 3_4:+60838370 Msa0511330:CDS
TGGTGAAACTTGTCGGTATT+TGG 0.339201 3_4:+60839213 Msa0511330:CDS
CATGCTCTTGCTAAATTTGC+CGG 0.339227 3_4:+60839073 Msa0511330:CDS
GAGGAGGTGGAGGTGGAGGG+GGG 0.339394 3_4:+60838377 Msa0511330:CDS
AAACAAACTAGAGGAGTTAA+TGG 0.352716 3_4:+60838710 Msa0511330:CDS
CTTGCTTGCTTTAGTAATAT+CGG 0.357866 3_4:-60838830 None:intergenic
GATGAGGGAGCTGGAGATAA+TGG 0.359970 3_4:+60838352 Msa0511330:CDS
GAATTCAAAGAATTCTCCTT+TGG 0.361948 3_4:+60838739 Msa0511330:CDS
ACCCCGTTTGTAACAATTCC+CGG 0.363264 3_4:-60838047 None:intergenic
TCGATTGAGATTCCTGATAT+CGG 0.368583 3_4:+60839037 Msa0511330:CDS
AAGAGGAGGTGGAGGTGGAG+GGG 0.369474 3_4:+60838375 Msa0511330:CDS
GGAGTATATAGTAATCTTGC+AGG 0.374241 3_4:+60840093 Msa0511330:CDS
GAACTCCTTGGAGACTTGAT+TGG 0.374643 3_4:-60838134 None:intergenic
AGGGTCGGTCTTTGTACGTT+TGG 0.381995 3_4:+60839585 Msa0511330:CDS
GTTTGGCTGACTTGTATAAC+AGG 0.382339 3_4:+60839602 Msa0511330:CDS
CTGTCTGAAACTCTTTGATA+TGG 0.391161 3_4:+60841146 Msa0511330:three_prime_UTR
TCTAGTGGGGAAACATCTTC+TGG 0.391241 3_4:+60838419 Msa0511330:CDS
TTGTCAAACCACTGAATTCA+AGG 0.391923 3_4:+60838594 Msa0511330:CDS
ATTGTTACAAACGGGGTTCA+TGG 0.395239 3_4:+60838053 Msa0511330:CDS
TGGTAATGGGAAGCCGAGTT+TGG 0.395609 3_4:+60838931 Msa0511330:CDS
GTGTGCAGCGTTATGCCTTA+AGG 0.399879 3_4:+60839995 Msa0511330:CDS
TGATTCGGAATTGCACCATT+TGG 0.399915 3_4:+60838319 Msa0511330:CDS
GGAGATAATGGAAGAGGAGG+TGG 0.401440 3_4:+60838364 Msa0511330:CDS
TCGCCCTCGAGACAAAGTTT+TGG 0.402595 3_4:+60838272 Msa0511330:CDS
CGATTGAGATTCCTGATATC+GGG 0.404768 3_4:+60839038 Msa0511330:CDS
TGGGAAGCCGAGTTTGGAAT+TGG 0.408392 3_4:+60838937 Msa0511330:CDS
AATTCAAAGAATTCTCCTTT+GGG 0.410118 3_4:+60838740 Msa0511330:CDS
TGGAGCACGTTGTTAGTATG+AGG 0.413215 3_4:+60840660 Msa0511330:CDS
TGCCGGGAATTGTTACAAAC+GGG 0.416439 3_4:+60838045 Msa0511330:CDS
ATTTGCAACCATTGCCATGC+TGG 0.416716 3_4:-60839419 None:intergenic
GTCCTAATTTCCAGGATGAT+GGG 0.417051 3_4:+60838186 Msa0511330:CDS
GCTATTGTTCCTTGCTGACC+AGG 0.418541 3_4:-60839817 None:intergenic
CTCTCCAGAGGAGCTTTAGC+AGG 0.418882 3_4:-60838665 None:intergenic
AGTAATATCGGTGCTCGCTC+TGG 0.418974 3_4:-60838818 None:intergenic
GCAAGAGATCTTATGTCAAC+TGG 0.419614 3_4:+60838848 Msa0511330:CDS
GGATGATGCAATTCTAACTT+TGG 0.420399 3_4:+60840640 Msa0511330:CDS
AAGCGTTGGTCCTAATTTCC+AGG 0.424656 3_4:+60838178 Msa0511330:CDS
TCCTCCTGCTAAAGCTCCTC+TGG 0.425124 3_4:+60838661 Msa0511330:CDS
CTCAATCGAACGCTCAAGAA+TGG 0.425249 3_4:-60839023 None:intergenic
GGTCCTAATTTCCAGGATGA+TGG 0.425860 3_4:+60838185 Msa0511330:CDS
TGTTTGAGAAGTTTGGTAAT+GGG 0.426594 3_4:+60838918 Msa0511330:CDS
CTGTTTGAGAAGTTTGGTAA+TGG 0.428608 3_4:+60838917 Msa0511330:CDS
CGACAAGTTTCACCAACTCT+TGG 0.428964 3_4:-60839205 None:intergenic
TTTATCTGATGATAAGAAGT+TGG 0.431998 3_4:+60838451 Msa0511330:CDS
TCAATAATGTTCTACACTGC+TGG 0.436270 3_4:+60839145 Msa0511330:CDS
TGTGCAGCGTTATGCCTTAA+GGG 0.442956 3_4:+60839996 Msa0511330:CDS
TAACAGGACAGGGAAGATAA+AGG 0.443611 3_4:+60839618 Msa0511330:CDS
GTCAATGAATGAGGTTGATC+AGG 0.448692 3_4:+60839750 Msa0511330:CDS
TAATTCTATAGCTTCCCTTA+AGG 0.449230 3_4:-60840010 None:intergenic
CTTGTCATCAAGGCCTGATA+AGG 0.452876 3_4:+60840830 Msa0511330:exon
CGCAGCAATATATTGCAGCC+TGG 0.453642 3_4:+60838979 Msa0511330:CDS
GAAGAGGAGGTGGAGGTGGA+GGG 0.453852 3_4:+60838374 Msa0511330:CDS
CATATATGAAACGAAACAAA+GGG 0.454124 3_4:-60841115 None:intergenic
GATAATGGAAGAGGAGGTGG+AGG 0.458491 3_4:+60838367 Msa0511330:CDS
TGGAGTTAAACTTTCCTTAG+TGG 0.459596 3_4:-60838114 None:intergenic
GCAGGCACGTACGACGCAAT+TGG 0.460085 3_4:+60840111 Msa0511330:CDS
TCGGAATTGCACCATTTGGT+TGG 0.461069 3_4:+60838323 Msa0511330:CDS
TATATACTCCAAGCGTTTCA+GGG 0.461186 3_4:-60840080 None:intergenic
TTTAAACAACCTTGTCATCA+AGG 0.463538 3_4:+60840820 Msa0511330:CDS
GGTCTTATATGTGAAACAAA+GGG 0.464250 3_4:+60839361 Msa0511330:CDS
GACAAGTTTCACCAACTCTT+GGG 0.466081 3_4:-60839204 None:intergenic
TCCCCACTAGAACTCTCTCC+TGG 0.466231 3_4:-60838407 None:intergenic
GGGGTTATGTATTACATGTT+GGG 0.468336 3_4:+60839859 Msa0511330:CDS
CAAACCACTGAATTCAAGGT+TGG 0.471026 3_4:+60838598 Msa0511330:CDS
TCATCACAAAGAATGTTCAT+TGG 0.472722 3_4:-60837628 None:intergenic
GGAAGCTATAGAATTATTTG+AGG 0.473262 3_4:+60840017 Msa0511330:CDS
TGATGATAAGAAGTTGGATA+TGG 0.475057 3_4:+60838457 Msa0511330:CDS
GTCTCCAAGTTGCATGTGAC+CGG 0.476378 3_4:-60839092 None:intergenic
CTATTGAAGAAGCTGCTGAT+AGG 0.478081 3_4:+60839329 Msa0511330:CDS
TGGAGACACCTATGCTATGT+TGG 0.481996 3_4:+60839108 Msa0511330:CDS
CACATAACCAATTCCAAACT+CGG 0.483673 3_4:-60838944 None:intergenic
TGATGAGTCTAGAATTGATT+CGG 0.484230 3_4:+60838304 Msa0511330:CDS
AGCATGGCAATGGTTGCAAA+TGG 0.484872 3_4:+60839421 Msa0511330:CDS
CAGCCTCGTCATATCGAGAC+AGG 0.487359 3_4:-60839498 None:intergenic
GGGGAAACATCTTCTGGAAT+GGG 0.488806 3_4:+60838425 Msa0511330:CDS
GGAGCTGGAGATAATGGAAG+AGG 0.489221 3_4:+60838358 Msa0511330:CDS
ATTAAGAGCAATACCAAAGA+AGG 0.492243 3_4:-60839956 None:intergenic
CAGCAGCTTCTTCAATAGAT+GGG 0.492737 3_4:-60839324 None:intergenic
ACAAACGGGGTTCATGGCGA+TGG 0.494013 3_4:+60838059 Msa0511330:CDS
GGTATTGCTCTTAATCAACT+GGG 0.495438 3_4:+60839964 Msa0511330:CDS
CAAGAGTTGGTGAAACTTGT+CGG 0.496966 3_4:+60839206 Msa0511330:CDS
GCTCAACAACCCCATCATCC+TGG 0.498084 3_4:-60838196 None:intergenic
CCGGTGATTGAGATTCAATC+TGG 0.498243 3_4:+60838509 Msa0511330:CDS
CTTATCAGGCCTTGATGACA+AGG 0.498399 3_4:-60840829 None:intergenic
GGAGTTAAACTTTCCTTAGT+GGG 0.499590 3_4:-60838113 None:intergenic
ATGCCGGGAATTGTTACAAA+CGG 0.499833 3_4:+60838044 Msa0511330:CDS
CCAAGCGTTTCAGGGTGATA+AGG 0.500209 3_4:-60840072 None:intergenic
TGGGGAAACATCTTCTGGAA+TGG 0.500676 3_4:+60838424 Msa0511330:CDS
TTTGCCGGTCACATGCAACT+TGG 0.500974 3_4:+60839088 Msa0511330:CDS
AGACCGCTAGCAATCTCCTC+TGG 0.501919 3_4:-60839703 None:intergenic
TGTGGACTCATTGAACTCCT+TGG 0.504396 3_4:-60838146 None:intergenic
CATTCATAGAGAAAATTGTT+CGG 0.504588 3_4:+60839300 Msa0511330:CDS
GGAATTGCACCATTTGGTTG+GGG 0.505497 3_4:+60838325 Msa0511330:CDS
CAAACGGGGTTCATGGCGAT+GGG 0.505611 3_4:+60838060 Msa0511330:CDS
ACAAAGACCGACCCTACTGC+TGG 0.507046 3_4:-60839577 None:intergenic
TTTCTCCCAAAATATGCCTC+TGG 0.508008 3_4:-60839177 None:intergenic
TCAATCGAACGCTCAAGAAT+GGG 0.508874 3_4:-60839022 None:intergenic
TTTGACAATTACATATATGT+TGG 0.510684 3_4:+60841176 Msa0511330:three_prime_UTR
AAAATGGAATCATTGAAAAG+TGG 0.511725 3_4:+60840981 Msa0511330:three_prime_UTR
GCATCTGTTGACTGCAGCAT+TGG 0.511790 3_4:+60839460 Msa0511330:CDS
GGAGACACCTATGCTATGTT+GGG 0.514722 3_4:+60839109 Msa0511330:CDS
TATTGTCTATTAACACTGTC+GGG 0.516937 3_4:-60840929 None:intergenic
CTATTGTTCCTTGCTGACCA+GGG 0.516960 3_4:-60839816 None:intergenic
GCTGACTTGTATAACAGGAC+AGG 0.521984 3_4:+60839607 Msa0511330:CDS
ATATATGAGAATCCAATGCC+TGG 0.522080 3_4:+60839673 Msa0511330:CDS
TCAATCTGGTAGTAAAAGTC+CGG 0.522430 3_4:+60838490 Msa0511330:CDS
TCAATCTGGTAGTAAAAGTC+CGG 0.522430 3_4:+60838523 Msa0511330:CDS
AAACCACTGAATTCAAGGTT+GGG 0.523272 3_4:+60838599 Msa0511330:CDS
GGAGAGAATCATCCAGCAGT+AGG 0.523946 3_4:+60839565 Msa0511330:CDS
ATGGTGGCTGAGATTCAATC+TGG 0.526317 3_4:+60838476 Msa0511330:CDS
GAATTCGAAGCAGAAAAGTC+AGG 0.526447 3_4:+60840762 Msa0511330:CDS
TCCTAATTTCCAGGATGATG+GGG 0.527955 3_4:+60838187 Msa0511330:CDS
AGTGATTTGTTAAAGGAAGC+CGG 0.532534 3_4:+60840737 Msa0511330:CDS
CCTTATCACCCTGAAACGCT+TGG 0.533024 3_4:+60840072 Msa0511330:CDS
ATCTCCTCTGGAGTAACTCC+AGG 0.533475 3_4:-60839691 None:intergenic
ACGATCTAGTAGTAAAAGTC+CGG 0.534457 3_4:+60838556 Msa0511330:CDS
TGTGAACAATTCTCCCACTA+AGG 0.536500 3_4:+60838100 Msa0511330:CDS
AGCTGCTGATAGGAGGCTCA+TGG 0.537279 3_4:+60839339 Msa0511330:CDS
TCTGAGAGAATTAAAGATGC+CGG 0.537446 3_4:+60838028 Msa0511330:CDS
GGTCAGCAAGGAACAATAGC+AGG 0.538063 3_4:+60839820 Msa0511330:CDS
ATATTGTCTATTAACACTGT+CGG 0.538572 3_4:-60840930 None:intergenic
CAAGTTACTGCAGAAAGCAT+TGG 0.539243 3_4:+60839777 Msa0511330:CDS
CTGAGAGAATTAAAGATGCC+GGG 0.540648 3_4:+60838029 Msa0511330:CDS
TCTGGAGTAACTCCAGGCAT+TGG 0.542481 3_4:-60839685 None:intergenic
AGCAGAGATGATCTGTCAAA+TGG 0.543349 3_4:+60839270 Msa0511330:CDS
GGGTCTTATATGTGAAACAA+AGG 0.545385 3_4:+60839360 Msa0511330:CDS
AATAGCAGGAATCGAAGCTC+AGG 0.546276 3_4:+60839834 Msa0511330:CDS
GAGCCCAACCTTGAATTCAG+TGG 0.557395 3_4:-60838602 None:intergenic
GGAGCACGTTGTTAGTATGA+GGG 0.558173 3_4:+60840661 Msa0511330:CDS
AGGCCAGGAGAGAGTTCTAG+TGG 0.560737 3_4:+60838404 Msa0511330:CDS
TCATATATGAAACGAAACAA+AGG 0.563522 3_4:-60841116 None:intergenic
CTAGATCGTGTCTTAACCAC+CGG 0.564205 3_4:-60838542 None:intergenic
GCTGGAGATAATGGAAGAGG+AGG 0.567552 3_4:+60838361 Msa0511330:CDS
TGATCATTCTTTCTCTCCAG+AGG 0.571551 3_4:-60838677 None:intergenic
GGAGAAACAGACCCAAGAGT+TGG 0.572030 3_4:+60839193 Msa0511330:CDS
GCAGCAATATATTGCAGCCT+GGG 0.572631 3_4:+60838980 Msa0511330:CDS
TCATAAAGCTGCTCGATCGT+AGG 0.573268 3_4:-60838218 None:intergenic
TTGAAGAAGCTGCTGATAGG+AGG 0.574364 3_4:+60839332 Msa0511330:CDS
GAGAGAATCATCCAGCAGTA+GGG 0.578129 3_4:+60839566 Msa0511330:CDS
AATGATGCCCCTGGTCAGCA+AGG 0.578324 3_4:+60839808 Msa0511330:CDS
GAGATATATAATGATGCCCC+TGG 0.582463 3_4:+60839799 Msa0511330:CDS
CCAGATTGAATCTCAATCAC+CGG 0.584520 3_4:-60838509 None:intergenic
TATTGTTCCTTGCTGACCAG+GGG 0.586144 3_4:-60839815 None:intergenic
TATCTATGAGTCAATGAATG+AGG 0.586376 3_4:+60839741 Msa0511330:CDS
GAATTGCACCATTTGGTTGG+GGG 0.586590 3_4:+60838326 Msa0511330:CDS
ACATTATTGAATTCTCAAGC+TGG 0.587320 3_4:-60839132 None:intergenic
TCCGCACAAAGCTCTTGAGT+TGG 0.592177 3_4:+60838877 Msa0511330:CDS
GATCCAAAACTTTGTCTCGA+GGG 0.596211 3_4:-60838275 None:intergenic
TAACTCCAATCAAGTCTCCA+AGG 0.600870 3_4:+60838129 Msa0511330:CDS
GGCCAGGAGAGAGTTCTAGT+GGG 0.601609 3_4:+60838405 Msa0511330:CDS
AGCAGGAATCGAAGCTCAGG+TGG 0.603399 3_4:+60839837 Msa0511330:CDS
GACGAGTGTTATACTTAATG+GGG 0.604411 3_4:+60840957 Msa0511330:three_prime_UTR
GTATGAGGGAGGAAAAGCTC+GGG 0.605021 3_4:+60840675 Msa0511330:CDS
GTATTGCTCTTAATCAACTG+GGG 0.605860 3_4:+60839965 Msa0511330:CDS
GCACGTACGACGCAATTGGA+AGG 0.606386 3_4:+60840115 Msa0511330:CDS
GCTGCTGATAGGAGGCTCAT+GGG 0.606688 3_4:+60839340 Msa0511330:CDS
AGGAATCGAAGCTCAGGTGG+GGG 0.609143 3_4:+60839840 Msa0511330:CDS
GCAGGAATCGAAGCTCAGGT+GGG 0.614855 3_4:+60839838 Msa0511330:CDS
AGATCCAAAACTTTGTCTCG+AGG 0.615616 3_4:-60838276 None:intergenic
CCACAGAGACGTCAAAGCGT+TGG 0.622035 3_4:+60838164 Msa0511330:CDS
ACGTGGATGATGAAAAGAGA+AGG 0.622587 3_4:+60840711 Msa0511330:CDS
CTGACTTGTATAACAGGACA+GGG 0.625190 3_4:+60839608 Msa0511330:CDS
GCAGTCAACAGATGCCACTT+CGG 0.626708 3_4:-60839452 None:intergenic
AAGCTGGCCCAACATAGCAT+AGG 0.627553 3_4:-60839116 None:intergenic
TTGCCATGCTGGCTAAAACA+AGG 0.628402 3_4:-60839408 None:intergenic
CAGGAATCGAAGCTCAGGTG+GGG 0.630903 3_4:+60839839 Msa0511330:CDS
TCCAGAGGAGCTTTAGCAGG+AGG 0.631409 3_4:-60838662 None:intergenic
AGCAGCTTCTTCAATAGATG+GGG 0.635291 3_4:-60839323 None:intergenic
AGTATGAGGGAGGAAAAGCT+CGG 0.639421 3_4:+60840674 Msa0511330:CDS
GATTGAGATTCCTGATATCG+GGG 0.642295 3_4:+60839039 Msa0511330:CDS
GAATCATCCAGCAGTAGGGT+CGG 0.642771 3_4:+60839570 Msa0511330:CDS
TTGCCTCACTATATCGACCC+AGG 0.644043 3_4:-60838997 None:intergenic
TATATGAAACGAAACAAAGG+GGG 0.644259 3_4:-60841113 None:intergenic
AAATGGCCAAGAAGCCGAAG+TGG 0.644324 3_4:+60839438 Msa0511330:CDS
CCAACGCTTTGACGTCTCTG+TGG 0.647529 3_4:-60838164 None:intergenic
ATCTGGTAGTAAAAGTCCGG+TGG 0.648715 3_4:+60838526 Msa0511330:CDS
ATTGACACTGACTTTCCCAA+AGG 0.649299 3_4:-60838755 None:intergenic
TGATAAGAAGTTGGATATGG+TGG 0.651245 3_4:+60838460 Msa0511330:CDS
AAACGGGGTTCATGGCGATG+GGG 0.651726 3_4:+60838061 Msa0511330:CDS
CAGCCTGGGTCGATATAGTG+AGG 0.655422 3_4:+60838994 Msa0511330:CDS
GCCAACTCAAGAGCTTTGTG+CGG 0.657377 3_4:-60838878 None:intergenic
GTCTTATATGTGAAACAAAG+GGG 0.658004 3_4:+60839362 Msa0511330:CDS
GGCATCTTTAATTCTCTCAG+AGG 0.663417 3_4:-60838026 None:intergenic
GCCAGGAGAGAGTTCTAGTG+GGG 0.664478 3_4:+60838406 Msa0511330:CDS
ATCCCTGTCTCGATATGACG+AGG 0.670357 3_4:+60839495 Msa0511330:CDS
ATAAAAGTAGAAGAAGCCAA+AGG 0.672919 3_4:+60837661 Msa0511330:CDS
TCACCAAGATCAAAACCCAA+AGG 0.673652 3_4:+60838632 Msa0511330:CDS
GCACGTTGTTAGTATGAGGG+AGG 0.676380 3_4:+60840664 Msa0511330:CDS
CAGGCTGCAATATATTGCTG+CGG 0.679348 3_4:-60838978 None:intergenic
ATATATGAAACGAAACAAAG+GGG 0.685382 3_4:-60841114 None:intergenic
GCCGGGAATTGTTACAAACG+GGG 0.687272 3_4:+60838046 Msa0511330:CDS
TAAGGCATAACGCTGCACAC+AGG 0.688937 3_4:-60839992 None:intergenic
CCTTTGAGAAAACAAACTAG+AGG 0.692430 3_4:+60838701 Msa0511330:CDS
AGCCTCGTCATATCGAGACA+GGG 0.693208 3_4:-60839497 None:intergenic
CGGGACAGCGAATCCCGACG+TGG 0.696066 3_4:+60840694 Msa0511330:CDS
ACTCCAGAGGAGATTGCTAG+CGG 0.697838 3_4:+60839700 Msa0511330:CDS
ATATGAAACGAAACAAAGGG+GGG 0.718488 3_4:-60841112 None:intergenic
AATGCCTGGAGTTACTCCAG+AGG 0.727468 3_4:+60839687 Msa0511330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAGTTAAATTCATTATTT+TGG + chr3_4:60840397-60840416 Msa0511330:intron 10.0%
!!! CGAAAAAAAATTTGTATTTT+TGG - chr3_4:60837923-60837942 None:intergenic 15.0%
!!! AACTTTTACTAATAAAAAGA+AGG - chr3_4:60840384-60840403 None:intergenic 15.0%
!! AAAGAATCAAGTTTCTTTAA+AGG - chr3_4:60840860-60840879 None:intergenic 20.0%
!! ACATTGTGAAAAAAAATGAA+GGG + chr3_4:60840896-60840915 Msa0511330:three_prime_UTR 20.0%
!! ATGTTGTACACAAAAATAAA+GGG - chr3_4:60841089-60841108 None:intergenic 20.0%
!! AATGTTGTACACAAAAATAA+AGG - chr3_4:60841090-60841109 None:intergenic 20.0%
!! TTTGACAATTACATATATGT+TGG + chr3_4:60841176-60841195 Msa0511330:three_prime_UTR 20.0%
! ACTTTGACTATTGCAAATTA+TGG + chr3_4:60837693-60837712 Msa0511330:intron 25.0%
! TTTATCTGATGATAAGAAGT+TGG + chr3_4:60838451-60838470 Msa0511330:CDS 25.0%
! AATTCAAAGAATTCTCCTTT+GGG + chr3_4:60838740-60838759 Msa0511330:CDS 25.0%
! CATTCATAGAGAAAATTGTT+CGG + chr3_4:60839300-60839319 Msa0511330:CDS 25.0%
! ACAATACCTTGGTAAATTAA+AGG - chr3_4:60840218-60840237 None:intergenic 25.0%
! ATGTGAAATGATAACTGATT+CGG + chr3_4:60840309-60840328 Msa0511330:intron 25.0%
! CTTGGATAATCATAATCTAA+AGG - chr3_4:60840561-60840580 None:intergenic 25.0%
! GATTATGATTATCCAAGATA+TGG + chr3_4:60840564-60840583 Msa0511330:intron 25.0%
! CACATTGTGAAAAAAAATGA+AGG + chr3_4:60840895-60840914 Msa0511330:three_prime_UTR 25.0%
! ATATTGTCTATTAACACTGT+CGG - chr3_4:60840933-60840952 None:intergenic 25.0%
! TTATACTTAATGGGGTAAAA+TGG + chr3_4:60840965-60840984 Msa0511330:three_prime_UTR 25.0%
! AAAATGGAATCATTGAAAAG+TGG + chr3_4:60840981-60841000 Msa0511330:three_prime_UTR 25.0%
! ATATATGAAACGAAACAAAG+GGG - chr3_4:60841117-60841136 None:intergenic 25.0%
! CATATATGAAACGAAACAAA+GGG - chr3_4:60841118-60841137 None:intergenic 25.0%
! TCATATATGAAACGAAACAA+AGG - chr3_4:60841119-60841138 None:intergenic 25.0%
ATAAAAGTAGAAGAAGCCAA+AGG + chr3_4:60837661-60837680 Msa0511330:CDS 30.0%
! TCAAAGTTTTTCTTCACCTT+TGG - chr3_4:60837680-60837699 None:intergenic 30.0%
!! TGTTTGATATTTGTTGTCAC+AGG + chr3_4:60837993-60838012 Msa0511330:intron 30.0%
! TGATGAGTCTAGAATTGATT+CGG + chr3_4:60838304-60838323 Msa0511330:CDS 30.0%
TGATGATAAGAAGTTGGATA+TGG + chr3_4:60838457-60838476 Msa0511330:CDS 30.0%
!!! ACAATTTTTTCTGAGGAAAC+CGG - chr3_4:60838578-60838597 None:intergenic 30.0%
!!! TGGTTTGACAATTTTTTCTG+AGG - chr3_4:60838585-60838604 None:intergenic 30.0%
AAACAAACTAGAGGAGTTAA+TGG + chr3_4:60838710-60838729 Msa0511330:CDS 30.0%
GAATTCAAAGAATTCTCCTT+TGG + chr3_4:60838739-60838758 Msa0511330:CDS 30.0%
CTTGCTTGCTTTAGTAATAT+CGG - chr3_4:60838833-60838852 None:intergenic 30.0%
ATGAAACTGTTTGAGAAGTT+TGG + chr3_4:60838911-60838930 Msa0511330:CDS 30.0%
! TGTTTGAGAAGTTTGGTAAT+GGG + chr3_4:60838918-60838937 Msa0511330:CDS 30.0%
ACATTATTGAATTCTCAAGC+TGG - chr3_4:60839135-60839154 None:intergenic 30.0%
! GGTCTTATATGTGAAACAAA+GGG + chr3_4:60839361-60839380 Msa0511330:CDS 30.0%
GTCTTATATGTGAAACAAAG+GGG + chr3_4:60839362-60839381 Msa0511330:CDS 30.0%
TATCTATGAGTCAATGAATG+AGG + chr3_4:60839741-60839760 Msa0511330:CDS 30.0%
ATTAAGAGCAATACCAAAGA+AGG - chr3_4:60839959-60839978 None:intergenic 30.0%
TAATTCTATAGCTTCCCTTA+AGG - chr3_4:60840013-60840032 None:intergenic 30.0%
GGAAGCTATAGAATTATTTG+AGG + chr3_4:60840017-60840036 Msa0511330:CDS 30.0%
!! AAAAGATTTGCTAGAAGAAG+CGG - chr3_4:60840171-60840190 None:intergenic 30.0%
AAAGATTTCATAGTTCCACA+AGG - chr3_4:60840512-60840531 None:intergenic 30.0%
TGATTATCCAAGATATGGTT+TGG + chr3_4:60840569-60840588 Msa0511330:intron 30.0%
!! AAGGTTGAGTGATTTGTTAA+AGG + chr3_4:60840730-60840749 Msa0511330:CDS 30.0%
TTTAAACAACCTTGTCATCA+AGG + chr3_4:60840820-60840839 Msa0511330:CDS 30.0%
! CTTTAAAGGAAATCCTTATC+AGG - chr3_4:60840846-60840865 None:intergenic 30.0%
TTGATTCTTTGATGCTTTAC+AGG + chr3_4:60840870-60840889 Msa0511330:three_prime_UTR 30.0%
TGTGAAAAAAAATGAAGGGA+TGG + chr3_4:60840900-60840919 Msa0511330:three_prime_UTR 30.0%
GTGAAAAAAAATGAAGGGAT+GGG + chr3_4:60840901-60840920 Msa0511330:three_prime_UTR 30.0%
TATTGTCTATTAACACTGTC+GGG - chr3_4:60840932-60840951 None:intergenic 30.0%
TTGACGAGTGTTATACTTAA+TGG + chr3_4:60840955-60840974 Msa0511330:three_prime_UTR 30.0%
TGACGAGTGTTATACTTAAT+GGG + chr3_4:60840956-60840975 Msa0511330:three_prime_UTR 30.0%
TATATGAAACGAAACAAAGG+GGG - chr3_4:60841116-60841135 None:intergenic 30.0%
ACAGACAACATCTGATCAAA+TGG - chr3_4:60837832-60837851 None:intergenic 35.0%
!!! TTTTTTCGCCTTCTCTTTGT+TGG + chr3_4:60837935-60837954 Msa0511330:intron 35.0%
!! ATTTGTTGTCACAGGTATTC+TGG + chr3_4:60838001-60838020 Msa0511330:intron 35.0%
TCTGAGAGAATTAAAGATGC+CGG + chr3_4:60838028-60838047 Msa0511330:CDS 35.0%
GGAGTTAAACTTTCCTTAGT+GGG - chr3_4:60838116-60838135 None:intergenic 35.0%
TGGAGTTAAACTTTCCTTAG+TGG - chr3_4:60838117-60838136 None:intergenic 35.0%
!!! AGACAAAGTTTTGGATCTGA+CGG + chr3_4:60838281-60838300 Msa0511330:CDS 35.0%
TGATAAGAAGTTGGATATGG+TGG + chr3_4:60838460-60838479 Msa0511330:CDS 35.0%
TCAATCTGGTAGTAAAAGTC+CGG + chr3_4:60838490-60838509 Msa0511330:CDS 35.0%
TCAATCTGGTAGTAAAAGTC+CGG + chr3_4:60838490-60838509 Msa0511330:CDS 35.0%
ACGATCTAGTAGTAAAAGTC+CGG + chr3_4:60838556-60838575 Msa0511330:CDS 35.0%
TTGTCAAACCACTGAATTCA+AGG + chr3_4:60838594-60838613 Msa0511330:CDS 35.0%
AAACCACTGAATTCAAGGTT+GGG + chr3_4:60838599-60838618 Msa0511330:CDS 35.0%
!! TTTCCTTTGGGTTTTGATCT+TGG - chr3_4:60838638-60838657 None:intergenic 35.0%
!!! CCTCTAGTTTGTTTTCTCAA+AGG - chr3_4:60838704-60838723 None:intergenic 35.0%
! CCTTTGAGAAAACAAACTAG+AGG + chr3_4:60838701-60838720 Msa0511330:CDS 35.0%
CTGTTTGAGAAGTTTGGTAA+TGG + chr3_4:60838917-60838936 Msa0511330:CDS 35.0%
CACATAACCAATTCCAAACT+CGG - chr3_4:60838947-60838966 None:intergenic 35.0%
TCGATTGAGATTCCTGATAT+CGG + chr3_4:60839037-60839056 Msa0511330:CDS 35.0%
TCAATAATGTTCTACACTGC+TGG + chr3_4:60839145-60839164 Msa0511330:CDS 35.0%
! GGGTCTTATATGTGAAACAA+AGG + chr3_4:60839360-60839379 Msa0511330:CDS 35.0%
ATATATGAGAATCCAATGCC+TGG + chr3_4:60839673-60839692 Msa0511330:CDS 35.0%
GGGGTTATGTATTACATGTT+GGG + chr3_4:60839859-60839878 Msa0511330:CDS 35.0%
ATCACAAAACTTCGTGCTAT+TGG + chr3_4:60839919-60839938 Msa0511330:CDS 35.0%
GAGAAGAAATCATCCTTCTT+TGG + chr3_4:60839943-60839962 Msa0511330:CDS 35.0%
TGGTATTGCTCTTAATCAAC+TGG + chr3_4:60839963-60839982 Msa0511330:CDS 35.0%
GGTATTGCTCTTAATCAACT+GGG + chr3_4:60839964-60839983 Msa0511330:CDS 35.0%
GTATTGCTCTTAATCAACTG+GGG + chr3_4:60839965-60839984 Msa0511330:CDS 35.0%
!!! AGTGTTTTGGAACATGAGTT+GGG + chr3_4:60840048-60840067 Msa0511330:CDS 35.0%
TATATACTCCAAGCGTTTCA+GGG - chr3_4:60840083-60840102 None:intergenic 35.0%
GGAGTATATAGTAATCTTGC+AGG + chr3_4:60840093-60840112 Msa0511330:CDS 35.0%
! TCAGCACCTTTAATTTACCA+AGG + chr3_4:60840209-60840228 Msa0511330:intron 35.0%
CAGTTATCATTTCACATGAG+TGG - chr3_4:60840306-60840325 None:intergenic 35.0%
! GAAGTTCTTTTCTCCTTACA+GGG + chr3_4:60840596-60840615 Msa0511330:intron 35.0%
ATAGAAGATCAAACCCTGTA+AGG - chr3_4:60840612-60840631 None:intergenic 35.0%
AGGGTTTGATCTTCTATTTC+AGG + chr3_4:60840615-60840634 Msa0511330:intron 35.0%
TTTGATCTTCTATTTCAGGC+TGG + chr3_4:60840619-60840638 Msa0511330:intron 35.0%
GGATGATGCAATTCTAACTT+TGG + chr3_4:60840640-60840659 Msa0511330:CDS 35.0%
!! AGTGATTTGTTAAAGGAAGC+CGG + chr3_4:60840737-60840756 Msa0511330:CDS 35.0%
! TTTTCTGCTTCGAATTCTAC+CGG - chr3_4:60840759-60840778 None:intergenic 35.0%
GACGAGTGTTATACTTAATG+GGG + chr3_4:60840957-60840976 Msa0511330:three_prime_UTR 35.0%
ATATGAAACGAAACAAAGGG+GGG - chr3_4:60841115-60841134 None:intergenic 35.0%
! CTGTCTGAAACTCTTTGATA+TGG + chr3_4:60841146-60841165 Msa0511330:three_prime_UTR 35.0%
GGCATCTTTAATTCTCTCAG+AGG - chr3_4:60838029-60838048 None:intergenic 40.0%
CTGAGAGAATTAAAGATGCC+GGG + chr3_4:60838029-60838048 Msa0511330:CDS 40.0%
ATGCCGGGAATTGTTACAAA+CGG + chr3_4:60838044-60838063 Msa0511330:CDS 40.0%
ATTGTTACAAACGGGGTTCA+TGG + chr3_4:60838053-60838072 Msa0511330:CDS 40.0%
TGTGAACAATTCTCCCACTA+AGG + chr3_4:60838100-60838119 Msa0511330:CDS 40.0%
TAACTCCAATCAAGTCTCCA+AGG + chr3_4:60838129-60838148 Msa0511330:CDS 40.0%
GTCCTAATTTCCAGGATGAT+GGG + chr3_4:60838186-60838205 Msa0511330:CDS 40.0%
TCCTAATTTCCAGGATGATG+GGG + chr3_4:60838187-60838206 Msa0511330:CDS 40.0%
GATCCAAAACTTTGTCTCGA+GGG - chr3_4:60838278-60838297 None:intergenic 40.0%
AGATCCAAAACTTTGTCTCG+AGG - chr3_4:60838279-60838298 None:intergenic 40.0%
! TGATTCGGAATTGCACCATT+TGG + chr3_4:60838319-60838338 Msa0511330:CDS 40.0%
CCAGATTGAATCTCAATCAC+CGG - chr3_4:60838512-60838531 None:intergenic 40.0%
CAAACCACTGAATTCAAGGT+TGG + chr3_4:60838598-60838617 Msa0511330:CDS 40.0%
TCACCAAGATCAAAACCCAA+AGG + chr3_4:60838632-60838651 Msa0511330:CDS 40.0%
TGATCATTCTTTCTCTCCAG+AGG - chr3_4:60838680-60838699 None:intergenic 40.0%
!! ATTGACACTGACTTTCCCAA+AGG - chr3_4:60838758-60838777 None:intergenic 40.0%
AATGAGTCGCGTTGAGAATT+CGG + chr3_4:60838775-60838794 Msa0511330:CDS 40.0%
GCAAGAGATCTTATGTCAAC+TGG + chr3_4:60838848-60838867 Msa0511330:CDS 40.0%
TCAATCGAACGCTCAAGAAT+GGG - chr3_4:60839025-60839044 None:intergenic 40.0%
CGATTGAGATTCCTGATATC+GGG + chr3_4:60839038-60839057 Msa0511330:CDS 40.0%
GATTGAGATTCCTGATATCG+GGG + chr3_4:60839039-60839058 Msa0511330:CDS 40.0%
CATGCTCTTGCTAAATTTGC+CGG + chr3_4:60839073-60839092 Msa0511330:CDS 40.0%
!! TGAAGTCCAGAGGCATATTT+TGG + chr3_4:60839171-60839190 Msa0511330:CDS 40.0%
!! GAAGTCCAGAGGCATATTTT+GGG + chr3_4:60839172-60839191 Msa0511330:CDS 40.0%
TTTCTCCCAAAATATGCCTC+TGG - chr3_4:60839180-60839199 None:intergenic 40.0%
GACAAGTTTCACCAACTCTT+GGG - chr3_4:60839207-60839226 None:intergenic 40.0%
!! CAAGAGTTGGTGAAACTTGT+CGG + chr3_4:60839206-60839225 Msa0511330:CDS 40.0%
TGGTGAAACTTGTCGGTATT+TGG + chr3_4:60839213-60839232 Msa0511330:CDS 40.0%
AGCAGAGATGATCTGTCAAA+TGG + chr3_4:60839270-60839289 Msa0511330:CDS 40.0%
AGCAGCTTCTTCAATAGATG+GGG - chr3_4:60839326-60839345 None:intergenic 40.0%
CAGCAGCTTCTTCAATAGAT+GGG - chr3_4:60839327-60839346 None:intergenic 40.0%
TCAGCAGCTTCTTCAATAGA+TGG - chr3_4:60839328-60839347 None:intergenic 40.0%
CTATTGAAGAAGCTGCTGAT+AGG + chr3_4:60839329-60839348 Msa0511330:CDS 40.0%
!! GTTTGGCTGACTTGTATAAC+AGG + chr3_4:60839602-60839621 Msa0511330:CDS 40.0%
! CTGACTTGTATAACAGGACA+GGG + chr3_4:60839608-60839627 Msa0511330:CDS 40.0%
TAACAGGACAGGGAAGATAA+AGG + chr3_4:60839618-60839637 Msa0511330:CDS 40.0%
! GTCAATGAATGAGGTTGATC+AGG + chr3_4:60839750-60839769 Msa0511330:CDS 40.0%
! CAAGTTACTGCAGAAAGCAT+TGG + chr3_4:60839777-60839796 Msa0511330:CDS 40.0%
GAGATATATAATGATGCCCC+TGG + chr3_4:60839799-60839818 Msa0511330:CDS 40.0%
GGGGGTTATGTATTACATGT+TGG + chr3_4:60839858-60839877 Msa0511330:CDS 40.0%
!!! TGAGGAAGCAAAGAGTGTTT+TGG + chr3_4:60840035-60840054 Msa0511330:CDS 40.0%
!!! GAGTGTTTTGGAACATGAGT+TGG + chr3_4:60840047-60840066 Msa0511330:CDS 40.0%
!!! GTGTTTTGGAACATGAGTTG+GGG + chr3_4:60840049-60840068 Msa0511330:CDS 40.0%
CTATATACTCCAAGCGTTTC+AGG - chr3_4:60840084-60840103 None:intergenic 40.0%
!! GATAACTGATTCGGCATTCA+TGG + chr3_4:60840318-60840337 Msa0511330:intron 40.0%
TTCTTGGGGTCTAGTATAAG+TGG - chr3_4:60840456-60840475 None:intergenic 40.0%
ATACTAGACCCCAAGAAAGA+AGG + chr3_4:60840459-60840478 Msa0511330:intron 40.0%
TACTAGACCCCAAGAAAGAA+GGG + chr3_4:60840460-60840479 Msa0511330:intron 40.0%
! GGAGTTTGATTCACCTTTTG+AGG + chr3_4:60840486-60840505 Msa0511330:intron 40.0%
TTCGACACCAAACCATATCT+TGG - chr3_4:60840579-60840598 None:intergenic 40.0%
! CGAAGTTCTTTTCTCCTTAC+AGG + chr3_4:60840595-60840614 Msa0511330:intron 40.0%
! TCTCTTTTCATCATCCACGT+CGG - chr3_4:60840711-60840730 None:intergenic 40.0%
ACGTGGATGATGAAAAGAGA+AGG + chr3_4:60840711-60840730 Msa0511330:CDS 40.0%
GAATTCGAAGCAGAAAAGTC+AGG + chr3_4:60840762-60840781 Msa0511330:CDS 40.0%
CCACAGATCCAACAAAGAGA+AGG - chr3_4:60837946-60837965 None:intergenic 45.0%
CCTTCTCTTTGTTGGATCTG+TGG + chr3_4:60837943-60837962 Msa0511330:intron 45.0%
TCTCTTTGTTGGATCTGTGG+TGG + chr3_4:60837946-60837965 Msa0511330:intron 45.0%
CTCTTTGTTGGATCTGTGGT+GGG + chr3_4:60837947-60837966 Msa0511330:intron 45.0%
TGCCGGGAATTGTTACAAAC+GGG + chr3_4:60838045-60838064 Msa0511330:CDS 45.0%
ACCCCGTTTGTAACAATTCC+CGG - chr3_4:60838050-60838069 None:intergenic 45.0%
GAACTCCTTGGAGACTTGAT+TGG - chr3_4:60838137-60838156 None:intergenic 45.0%
TGTGGACTCATTGAACTCCT+TGG - chr3_4:60838149-60838168 None:intergenic 45.0%
!! AAGCGTTGGTCCTAATTTCC+AGG + chr3_4:60838178-60838197 Msa0511330:CDS 45.0%
GGTCCTAATTTCCAGGATGA+TGG + chr3_4:60838185-60838204 Msa0511330:CDS 45.0%
ACCCCATCATCCTGGAAATT+AGG - chr3_4:60838191-60838210 None:intergenic 45.0%
TCATAAAGCTGCTCGATCGT+AGG - chr3_4:60838221-60838240 None:intergenic 45.0%
TCGGAATTGCACCATTTGGT+TGG + chr3_4:60838323-60838342 Msa0511330:CDS 45.0%
CGGAATTGCACCATTTGGTT+GGG + chr3_4:60838324-60838343 Msa0511330:CDS 45.0%
GGAATTGCACCATTTGGTTG+GGG + chr3_4:60838325-60838344 Msa0511330:CDS 45.0%
GAATTGCACCATTTGGTTGG+GGG + chr3_4:60838326-60838345 Msa0511330:CDS 45.0%
TCTAGTGGGGAAACATCTTC+TGG + chr3_4:60838419-60838438 Msa0511330:CDS 45.0%
! TGGGGAAACATCTTCTGGAA+TGG + chr3_4:60838424-60838443 Msa0511330:CDS 45.0%
!! GGGGAAACATCTTCTGGAAT+GGG + chr3_4:60838425-60838444 Msa0511330:CDS 45.0%
ATGGTGGCTGAGATTCAATC+TGG + chr3_4:60838476-60838495 Msa0511330:CDS 45.0%
CCGGTGATTGAGATTCAATC+TGG + chr3_4:60838509-60838528 Msa0511330:CDS 45.0%
ATCTGGTAGTAAAAGTCCGG+TGG + chr3_4:60838493-60838512 Msa0511330:CDS 45.0%
CTAGATCGTGTCTTAACCAC+CGG - chr3_4:60838545-60838564 None:intergenic 45.0%
!! GCAGGAGGACTTTTTCCTTT+GGG - chr3_4:60838650-60838669 None:intergenic 45.0%
!! AGCAGGAGGACTTTTTCCTT+TGG - chr3_4:60838651-60838670 None:intergenic 45.0%
CAGGCTGCAATATATTGCTG+CGG - chr3_4:60838981-60839000 None:intergenic 45.0%
GCAGCAATATATTGCAGCCT+GGG + chr3_4:60838980-60838999 Msa0511330:CDS 45.0%
CTCAATCGAACGCTCAAGAA+TGG - chr3_4:60839026-60839045 None:intergenic 45.0%
!! TGTTGACTTTCCCCGATATC+AGG - chr3_4:60839052-60839071 None:intergenic 45.0%
TGGAGACACCTATGCTATGT+TGG + chr3_4:60839108-60839127 Msa0511330:CDS 45.0%
GGAGACACCTATGCTATGTT+GGG + chr3_4:60839109-60839128 Msa0511330:CDS 45.0%
CGACAAGTTTCACCAACTCT+TGG - chr3_4:60839208-60839227 None:intergenic 45.0%
TTGAAGAAGCTGCTGATAGG+AGG + chr3_4:60839332-60839351 Msa0511330:CDS 45.0%
!!! ACACCTTGTTTTAGCCAGCA+TGG + chr3_4:60839405-60839424 Msa0511330:CDS 45.0%
! TTGCCATGCTGGCTAAAACA+AGG - chr3_4:60839411-60839430 None:intergenic 45.0%
!!! TGTTTTAGCCAGCATGGCAA+TGG + chr3_4:60839411-60839430 Msa0511330:CDS 45.0%
ATTTGCAACCATTGCCATGC+TGG - chr3_4:60839422-60839441 None:intergenic 45.0%
AGCATGGCAATGGTTGCAAA+TGG + chr3_4:60839421-60839440 Msa0511330:CDS 45.0%
!! GCAGTTTTCAAGACCAGCAA+AGG + chr3_4:60839544-60839563 Msa0511330:CDS 45.0%
TGGATGATTCTCTCCTTTGC+TGG - chr3_4:60839560-60839579 None:intergenic 45.0%
GAGAGAATCATCCAGCAGTA+GGG + chr3_4:60839566-60839585 Msa0511330:CDS 45.0%
!! GCTGACTTGTATAACAGGAC+AGG + chr3_4:60839607-60839626 Msa0511330:CDS 45.0%
TATTGTTCCTTGCTGACCAG+GGG - chr3_4:60839818-60839837 None:intergenic 45.0%
CTATTGTTCCTTGCTGACCA+GGG - chr3_4:60839819-60839838 None:intergenic 45.0%
AATAGCAGGAATCGAAGCTC+AGG + chr3_4:60839834-60839853 Msa0511330:CDS 45.0%
TGTGCAGCGTTATGCCTTAA+GGG + chr3_4:60839996-60840015 Msa0511330:CDS 45.0%
GAAGAAGCGGAAACACAGAA+GGG - chr3_4:60840158-60840177 None:intergenic 45.0%
AGAAGAAGCGGAAACACAGA+AGG - chr3_4:60840159-60840178 None:intergenic 45.0%
!! ACCAAGGTATTGTGTGAAGC+AGG + chr3_4:60840225-60840244 Msa0511330:intron 45.0%
TGGGGTCTAGTATAAGTGGT+TGG - chr3_4:60840452-60840471 None:intergenic 45.0%
!!! ATTCACCTTTTGAGGCCTTG+TGG + chr3_4:60840494-60840513 Msa0511330:intron 45.0%
TAGTTCCACAAGGCCTCAAA+AGG - chr3_4:60840502-60840521 None:intergenic 45.0%
TGGAGCACGTTGTTAGTATG+AGG + chr3_4:60840660-60840679 Msa0511330:CDS 45.0%
GGAGCACGTTGTTAGTATGA+GGG + chr3_4:60840661-60840680 Msa0511330:CDS 45.0%
AGTATGAGGGAGGAAAAGCT+CGG + chr3_4:60840674-60840693 Msa0511330:CDS 45.0%
! CTCTTTTCATCATCCACGTC+GGG - chr3_4:60840710-60840729 None:intergenic 45.0%
! CTTATCAGGCCTTGATGACA+AGG - chr3_4:60840832-60840851 None:intergenic 45.0%
CTTGTCATCAAGGCCTGATA+AGG + chr3_4:60840830-60840849 Msa0511330:exon 45.0%
GCCGGGAATTGTTACAAACG+GGG + chr3_4:60838046-60838065 Msa0511330:CDS 50.0%
! TCGCCCTCGAGACAAAGTTT+TGG + chr3_4:60838272-60838291 Msa0511330:CDS 50.0%
GATGAGGGAGCTGGAGATAA+TGG + chr3_4:60838352-60838371 Msa0511330:CDS 50.0%
!! GGAGCTGGAGATAATGGAAG+AGG + chr3_4:60838358-60838377 Msa0511330:CDS 50.0%
!! GCTGGAGATAATGGAAGAGG+AGG + chr3_4:60838361-60838380 Msa0511330:CDS 50.0%
!! GGAGATAATGGAAGAGGAGG+TGG + chr3_4:60838364-60838383 Msa0511330:CDS 50.0%
!! GATAATGGAAGAGGAGGTGG+AGG + chr3_4:60838367-60838386 Msa0511330:CDS 50.0%
GAGCCCAACCTTGAATTCAG+TGG - chr3_4:60838605-60838624 None:intergenic 50.0%
! AGTAATATCGGTGCTCGCTC+TGG - chr3_4:60838821-60838840 None:intergenic 50.0%
TCCGCACAAAGCTCTTGAGT+TGG + chr3_4:60838877-60838896 Msa0511330:CDS 50.0%
! GCCAACTCAAGAGCTTTGTG+CGG - chr3_4:60838881-60838900 None:intergenic 50.0%
!! TGGTAATGGGAAGCCGAGTT+TGG + chr3_4:60838931-60838950 Msa0511330:CDS 50.0%
! TGGGAAGCCGAGTTTGGAAT+TGG + chr3_4:60838937-60838956 Msa0511330:CDS 50.0%
CGCAGCAATATATTGCAGCC+TGG + chr3_4:60838979-60838998 Msa0511330:CDS 50.0%
TTGCCTCACTATATCGACCC+AGG - chr3_4:60839000-60839019 None:intergenic 50.0%
TTTGCCGGTCACATGCAACT+TGG + chr3_4:60839088-60839107 Msa0511330:CDS 50.0%
GTCTCCAAGTTGCATGTGAC+CGG - chr3_4:60839095-60839114 None:intergenic 50.0%
AAGCTGGCCCAACATAGCAT+AGG - chr3_4:60839119-60839138 None:intergenic 50.0%
!!! CTGCTGGTTTTGAAGTCCAG+AGG + chr3_4:60839161-60839180 Msa0511330:CDS 50.0%
GGAGAAACAGACCCAAGAGT+TGG + chr3_4:60839193-60839212 Msa0511330:CDS 50.0%
AAATGGCCAAGAAGCCGAAG+TGG + chr3_4:60839438-60839457 Msa0511330:CDS 50.0%
! GCAGTCAACAGATGCCACTT+CGG - chr3_4:60839455-60839474 None:intergenic 50.0%
! GCATCTGTTGACTGCAGCAT+TGG + chr3_4:60839460-60839479 Msa0511330:CDS 50.0%
ATCCCTGTCTCGATATGACG+AGG + chr3_4:60839495-60839514 Msa0511330:CDS 50.0%
AGCCTCGTCATATCGAGACA+GGG - chr3_4:60839500-60839519 None:intergenic 50.0%
GGAGAGAATCATCCAGCAGT+AGG + chr3_4:60839565-60839584 Msa0511330:CDS 50.0%
GAATCATCCAGCAGTAGGGT+CGG + chr3_4:60839570-60839589 Msa0511330:CDS 50.0%
AGGGTCGGTCTTTGTACGTT+TGG + chr3_4:60839585-60839604 Msa0511330:CDS 50.0%
! TCTGGAGTAACTCCAGGCAT+TGG - chr3_4:60839688-60839707 None:intergenic 50.0%
AATGCCTGGAGTTACTCCAG+AGG + chr3_4:60839687-60839706 Msa0511330:CDS 50.0%
!! ATCTCCTCTGGAGTAACTCC+AGG - chr3_4:60839694-60839713 None:intergenic 50.0%
ACTCCAGAGGAGATTGCTAG+CGG + chr3_4:60839700-60839719 Msa0511330:CDS 50.0%
GCTATTGTTCCTTGCTGACC+AGG - chr3_4:60839820-60839839 None:intergenic 50.0%
GGTCAGCAAGGAACAATAGC+AGG + chr3_4:60839820-60839839 Msa0511330:CDS 50.0%
TAAGGCATAACGCTGCACAC+AGG - chr3_4:60839995-60840014 None:intergenic 50.0%
GTGTGCAGCGTTATGCCTTA+AGG + chr3_4:60839995-60840014 Msa0511330:CDS 50.0%
CCAAGCGTTTCAGGGTGATA+AGG - chr3_4:60840075-60840094 None:intergenic 50.0%
CCTTATCACCCTGAAACGCT+TGG + chr3_4:60840072-60840091 Msa0511330:CDS 50.0%
GCCTGCTTCACACAATACCT+TGG - chr3_4:60840229-60840248 None:intergenic 50.0%
ATGAGTGGCATGACTCGATC+AGG - chr3_4:60840291-60840310 None:intergenic 50.0%
TAGACCCCAAGAAAGAAGGG+TGG + chr3_4:60840463-60840482 Msa0511330:intron 50.0%
AGACCCCAAGAAAGAAGGGT+GGG + chr3_4:60840464-60840483 Msa0511330:intron 50.0%
ACTCCCCACCCTTCTTTCTT+GGG - chr3_4:60840471-60840490 None:intergenic 50.0%
AACTCCCCACCCTTCTTTCT+TGG - chr3_4:60840472-60840491 None:intergenic 50.0%
GCACGTTGTTAGTATGAGGG+AGG + chr3_4:60840664-60840683 Msa0511330:CDS 50.0%
GTATGAGGGAGGAAAAGCTC+GGG + chr3_4:60840675-60840694 Msa0511330:CDS 50.0%
ACAAACGGGGTTCATGGCGA+TGG + chr3_4:60838059-60838078 Msa0511330:CDS 55.0%
CAAACGGGGTTCATGGCGAT+GGG + chr3_4:60838060-60838079 Msa0511330:CDS 55.0%
AAACGGGGTTCATGGCGATG+GGG + chr3_4:60838061-60838080 Msa0511330:CDS 55.0%
CCAACGCTTTGACGTCTCTG+TGG - chr3_4:60838167-60838186 None:intergenic 55.0%
CCACAGAGACGTCAAAGCGT+TGG + chr3_4:60838164-60838183 Msa0511330:CDS 55.0%
GCTCAACAACCCCATCATCC+TGG - chr3_4:60838199-60838218 None:intergenic 55.0%
TGCACCATTTGGTTGGGGGA+CGG + chr3_4:60838330-60838349 Msa0511330:CDS 55.0%
TCATCCGTCCCCCAACCAAA+TGG - chr3_4:60838337-60838356 None:intergenic 55.0%
ATTTGGTTGGGGGACGGATG+AGG + chr3_4:60838336-60838355 Msa0511330:CDS 55.0%
TTTGGTTGGGGGACGGATGA+GGG + chr3_4:60838337-60838356 Msa0511330:CDS 55.0%
AATGGAAGAGGAGGTGGAGG+TGG + chr3_4:60838370-60838389 Msa0511330:CDS 55.0%
! AGGCCAGGAGAGAGTTCTAG+TGG + chr3_4:60838404-60838423 Msa0511330:CDS 55.0%
! GGCCAGGAGAGAGTTCTAGT+GGG + chr3_4:60838405-60838424 Msa0511330:CDS 55.0%
! GCCAGGAGAGAGTTCTAGTG+GGG + chr3_4:60838406-60838425 Msa0511330:CDS 55.0%
TCCCCACTAGAACTCTCTCC+TGG - chr3_4:60838410-60838429 None:intergenic 55.0%
TCCTCCTGCTAAAGCTCCTC+TGG + chr3_4:60838661-60838680 Msa0511330:CDS 55.0%
! TCCAGAGGAGCTTTAGCAGG+AGG - chr3_4:60838665-60838684 None:intergenic 55.0%
! CTCTCCAGAGGAGCTTTAGC+AGG - chr3_4:60838668-60838687 None:intergenic 55.0%
CAGCCTGGGTCGATATAGTG+AGG + chr3_4:60838994-60839013 Msa0511330:CDS 55.0%
AGCTGCTGATAGGAGGCTCA+TGG + chr3_4:60839339-60839358 Msa0511330:CDS 55.0%
GCTGCTGATAGGAGGCTCAT+GGG + chr3_4:60839340-60839359 Msa0511330:CDS 55.0%
! CAGATGCCACTTCGGCTTCT+TGG - chr3_4:60839447-60839466 None:intergenic 55.0%
CAGCCTCGTCATATCGAGAC+AGG - chr3_4:60839501-60839520 None:intergenic 55.0%
ACAAAGACCGACCCTACTGC+TGG - chr3_4:60839580-60839599 None:intergenic 55.0%
AGACCGCTAGCAATCTCCTC+TGG - chr3_4:60839706-60839725 None:intergenic 55.0%
AATGATGCCCCTGGTCAGCA+AGG + chr3_4:60839808-60839827 Msa0511330:CDS 55.0%
AGCAGGAATCGAAGCTCAGG+TGG + chr3_4:60839837-60839856 Msa0511330:CDS 55.0%
GCAGGAATCGAAGCTCAGGT+GGG + chr3_4:60839838-60839857 Msa0511330:CDS 55.0%
CAGGAATCGAAGCTCAGGTG+GGG + chr3_4:60839839-60839858 Msa0511330:CDS 55.0%
AGGAATCGAAGCTCAGGTGG+GGG + chr3_4:60839840-60839859 Msa0511330:CDS 55.0%
GCACGTACGACGCAATTGGA+AGG + chr3_4:60840115-60840134 Msa0511330:CDS 55.0%
GACCCCAAGAAAGAAGGGTG+GGG + chr3_4:60840465-60840484 Msa0511330:intron 55.0%
CTCCCCACCCTTCTTTCTTG+GGG - chr3_4:60840470-60840489 None:intergenic 55.0%
! TGCGAGCGTCGCTGTCAAAA+AGG - chr3_4:60840799-60840818 None:intergenic 55.0%
GAAGAGGAGGTGGAGGTGGA+GGG + chr3_4:60838374-60838393 Msa0511330:CDS 60.0%
AAGAGGAGGTGGAGGTGGAG+GGG + chr3_4:60838375-60838394 Msa0511330:CDS 60.0%
GCAGGCACGTACGACGCAAT+TGG + chr3_4:60840111-60840130 Msa0511330:CDS 60.0%
GGAAGAGGAGGTGGAGGTGG+AGG + chr3_4:60838373-60838392 Msa0511330:CDS 65.0%
AGAGGAGGTGGAGGTGGAGG+GGG + chr3_4:60838376-60838395 Msa0511330:CDS 65.0%
TGGAGGTGGAGGGGGGAAGA+AGG + chr3_4:60838384-60838403 Msa0511330:CDS 65.0%
TGGGGGACGGATGAGGGAGC+TGG + chr3_4:60838343-60838362 Msa0511330:CDS 70.0%
GAGGAGGTGGAGGTGGAGGG+GGG + chr3_4:60838377-60838396 Msa0511330:CDS 70.0%
GTGGAGGGGGGAAGAAGGCC+AGG + chr3_4:60838389-60838408 Msa0511330:CDS 70.0%
CGGGACAGCGAATCCCGACG+TGG + chr3_4:60840694-60840713 Msa0511330:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 60837631 60841225 60837631 ID=Msa0511330;Name=Msa0511330
chr3_4 mRNA 60837631 60841225 60837631 ID=Msa0511330-mRNA-1;Parent=Msa0511330;Name=Msa0511330-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.33|1|1|1|3|378|794
chr3_4 exon 60837631 60837682 60837631 ID=Msa0511330-mRNA-1:exon:14656;Parent=Msa0511330-mRNA-1
chr3_4 exon 60838015 60840136 60838015 ID=Msa0511330-mRNA-1:exon:14657;Parent=Msa0511330-mRNA-1
chr3_4 exon 60840637 60841225 60840637 ID=Msa0511330-mRNA-1:exon:14658;Parent=Msa0511330-mRNA-1
chr3_4 CDS 60837631 60837682 60837631 ID=Msa0511330-mRNA-1:cds;Parent=Msa0511330-mRNA-1
chr3_4 CDS 60838015 60840136 60838015 ID=Msa0511330-mRNA-1:cds;Parent=Msa0511330-mRNA-1
chr3_4 CDS 60840637 60840847 60840637 ID=Msa0511330-mRNA-1:cds;Parent=Msa0511330-mRNA-1
chr3_4 three_prime_UTR 60840848 60841225 60840848 ID=Msa0511330-mRNA-1:three_prime_utr;Parent=Msa0511330-mRNA-1
Gene Sequence

>Msa0511330

ATGAACATTCTTTGTGATGATGAGAACAAAATAAAAGTAGAAGAAGCCAAAGGTATTCTGGATCCTCTGAGAGAATTAAAGATGCCGGGAATTGTTACAAACGGGGTTCATGGCGATGGGGAAGTTAATGAGATGAATGTGAACAATTCTCCCACTAAGGAAAGTTTAACTCCAATCAAGTCTCCAAGGAGTTCAATGAGTCCACAGAGACGTCAAAGCGTTGGTCCTAATTTCCAGGATGATGGGGTTGTTGAGCCTACGATCGAGCAGCTTTATGAAAATGTGTGTGATATGCAGAGTTCTGATCAGTCGCCCTCGAGACAAAGTTTTGGATCTGACGGTGATGAGTCTAGAATTGATTCGGAATTGCACCATTTGGTTGGGGGACGGATGAGGGAGCTGGAGATAATGGAAGAGGAGGTGGAGGTGGAGGGGGGAAGAAGGCCAGGAGAGAGTTCTAGTGGGGAAACATCTTCTGGAATGGGTAATTTATCTGATGATAAGAAGTTGGATATGGTGGCTGAGATTCAATCTGGTAGTAAAAGTCCGGTGATTGAGATTCAATCTGGTAGTAAAAGTCCGGTGGTTAAGACACGATCTAGTAGTAAAAGTCCGGTTTCCTCAGAAAAAATTGTCAAACCACTGAATTCAAGGTTGGGCTCTGACACTTCACCAAGATCAAAACCCAAAGGAAAAAGTCCTCCTGCTAAAGCTCCTCTGGAGAGAAAGAATGATCAGCCTTTGAGAAAACAAACTAGAGGAGTTAATGGCGTGAAGAATTCAAAGAATTCTCCTTTGGGAAAGTCAGTGTCAATGAGTCGCGTTGAGAATTCGGCTGAATCAGCATTAGATAAACCAGAGCGAGCACCGATATTACTAAAGCAAGCAAGAGATCTTATGTCAACTGGAGATAATCCGCACAAAGCTCTTGAGTTGGCTCTTCAAGCAATGAAACTGTTTGAGAAGTTTGGTAATGGGAAGCCGAGTTTGGAATTGGTTATGTGTTTACATGTTACCGCAGCAATATATTGCAGCCTGGGTCGATATAGTGAGGCAATTCCCATTCTTGAGCGTTCGATTGAGATTCCTGATATCGGGGAAAGTCAACAGCATGCTCTTGCTAAATTTGCCGGTCACATGCAACTTGGAGACACCTATGCTATGTTGGGCCAGCTTGAGAATTCAATAATGTTCTACACTGCTGGTTTTGAAGTCCAGAGGCATATTTTGGGAGAAACAGACCCAAGAGTTGGTGAAACTTGTCGGTATTTGGCTGAAGCTAATGTTCAAGCTTTGCAATTTAATGAAGCAGAGATGATCTGTCAAATGGCTCTTGACATTCATAGAGAAAATTGTTCGGCCCCATCTATTGAAGAAGCTGCTGATAGGAGGCTCATGGGTCTTATATGTGAAACAAAGGGGAATCATGAAGCAGCTCTTGAACACCTTGTTTTAGCCAGCATGGCAATGGTTGCAAATGGCCAAGAAGCCGAAGTGGCATCTGTTGACTGCAGCATTGGAGACACATACTTATCCCTGTCTCGATATGACGAGGCTGTCTTTGCATATGAAAAAGCATTAGCAGTTTTCAAGACCAGCAAAGGAGAGAATCATCCAGCAGTAGGGTCGGTCTTTGTACGTTTGGCTGACTTGTATAACAGGACAGGGAAGATAAAGGAATCAAAGTCGTATTGCGATAAAGCACTTAAAATATATGAGAATCCAATGCCTGGAGTTACTCCAGAGGAGATTGCTAGCGGTCTTACAAATCTGTCAAGTATCTATGAGTCAATGAATGAGGTTGATCAGGCACTCAAGTTACTGCAGAAAGCATTGGAGATATATAATGATGCCCCTGGTCAGCAAGGAACAATAGCAGGAATCGAAGCTCAGGTGGGGGTTATGTATTACATGTTGGGAAACTATACTGAATCTTATAACACTTTGAAGAAAGCAATCACAAAACTTCGTGCTATTGGAGAGAAGAAATCATCCTTCTTTGGTATTGCTCTTAATCAACTGGGGCTTGCCTGTGTGCAGCGTTATGCCTTAAGGGAAGCTATAGAATTATTTGAGGAAGCAAAGAGTGTTTTGGAACATGAGTTGGGGCCTTATCACCCTGAAACGCTTGGAGTATATAGTAATCTTGCAGGCACGTACGACGCAATTGGAAGGCTGGATGATGCAATTCTAACTTTGGAGCACGTTGTTAGTATGAGGGAGGAAAAGCTCGGGACAGCGAATCCCGACGTGGATGATGAAAAGAGAAGGTTGAGTGATTTGTTAAAGGAAGCCGGTAGAATTCGAAGCAGAAAAGTCAGGTCACTAGAGAACCTTTTTGACAGCGACGCTCGCACTTTAAACAACCTTGTCATCAAGGCCTGA
Protein sequence

>Msa0511330

MNILCDDENKIKVEEAKGILDPLRELKMPGIVTNGVHGDGEVNEMNVNNSPTKESLTPIKSPRSSMSPQRRQSVGPNFQDDGVVEPTIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELHHLVGGRMRELEIMEEEVEVEGGRRPGESSSGETSSGMGNLSDDKKLDMVAEIQSGSKSPVIEIQSGSKSPVVKTRSSSKSPVSSEKIVKPLNSRLGSDTSPRSKPKGKSPPAKAPLERKNDQPLRKQTRGVNGVKNSKNSPLGKSVSMSRVENSAESALDKPERAPILLKQARDLMSTGDNPHKALELALQAMKLFEKFGNGKPSLELVMCLHVTAAIYCSLGRYSEAIPILERSIEIPDIGESQQHALAKFAGHMQLGDTYAMLGQLENSIMFYTAGFEVQRHILGETDPRVGETCRYLAEANVQALQFNEAEMICQMALDIHRENCSAPSIEEAADRRLMGLICETKGNHEAALEHLVLASMAMVANGQEAEVASVDCSIGDTYLSLSRYDEAVFAYEKALAVFKTSKGENHPAVGSVFVRLADLYNRTGKIKESKSYCDKALKIYENPMPGVTPEEIASGLTNLSSIYESMNEVDQALKLLQKALEIYNDAPGQQGTIAGIEAQVGVMYYMLGNYTESYNTLKKAITKLRAIGEKKSSFFGIALNQLGLACVQRYALREAIELFEEAKSVLEHELGPYHPETLGVYSNLAGTYDAIGRLDDAILTLEHVVSMREEKLGTANPDVDDEKRRLSDLLKEAGRIRSRKVRSLENLFDSDARTLNNLVIKA*