AlfalfaGEDB | Msa0339280

M. sativa cultivar zhongmu-4 / Msa0339280

KEGG: K13435
GO: GO:0000902 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0032502 GO:0032989 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0060560 GO:0071704 GO:0071840 GO:0071944 GO:0140096 GO:1901564 GO:1901700
PFAM: PF12819.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0339280	XP_003597308.1	97.403	847	21	1	1	846	1	847	0.0	1707

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0339280	sp\|Q9LX66\|HERK_ARATH	65.259	829	269	9	21	846	18	830	0.0	1081

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015670	Msa0339280	0.843909	1.048240e-58	-8.615850e-47
Msa0036970	Msa0339280	0.807864	4.104978e-50	-8.615850e-47
Msa0041860	Msa0339280	0.801928	7.144298e-49	-8.615850e-47
Msa0045550	Msa0339280	0.804408	2.191913e-49	-8.615850e-47
Msa0045910	Msa0339280	0.815783	7.745439e-52	-8.615850e-47
Msa0110130	Msa0339280	0.815909	7.260318e-52	-8.615850e-47
Msa0138090	Msa0339280	0.800896	1.162138e-48	-8.615850e-47
Msa0264080	Msa0339280	0.805321	1.412620e-49	-8.615850e-47
Msa0339280	Msa0379710	0.833655	4.708483e-56	-8.615850e-47
Msa0339280	Msa0429090	0.845554	3.777494e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0339280	MtrunA17_Chr2g0327671	97.403	847	21	1	1	846	1	847	1707
Msa0339280	MtrunA17_Chr4g0030441	73.571	840	209	8	10	846	11	840	1239
Msa0339280	MtrunA17_Chr2g0318301	53.349	836	358	15	26	846	25	843	834
Msa0339280	MtrunA17_Chr8g0352381	52.387	775	340	15	28	789	59	817	778
Msa0339280	MtrunA17_Chr1g0202711	47.716	832	384	14	27	846	40	832	743
Msa0339280	MtrunA17_Chr6g0468691	50.258	776	346	15	26	781	21	776	720
Msa0339280	MtrunA17_Chr4g0061081	45.711	816	392	15	30	809	34	834	670
Msa0339280	MtrunA17_Chr2g0292501	44.089	812	409	18	14	792	10	809	635
Msa0339280	MtrunA17_Chr7g0245131	43.142	904	431	27	11	846	5	893	631
Msa0339280	MtrunA17_Chr7g0274261	42.806	841	414	21	49	846	56	872	610

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0339280	AT3G46290.1	65.259	829	269	9	21	846	18	830	1081
Msa0339280	AT5G59700.1	63.400	847	283	13	6	846	4	829	1008
Msa0339280	AT5G54380.1	52.265	861	371	18	14	846	7	855	813
Msa0339280	AT4G39110.1	50.000	846	377	18	28	846	52	878	774
Msa0339280	AT5G61350.1	52.281	811	339	21	26	798	26	826	763
Msa0339280	AT2G21480.1	50.119	840	383	15	26	846	49	871	763
Msa0339280	AT2G39360.1	48.227	846	382	14	15	846	12	815	751
Msa0339280	AT5G24010.1	47.991	846	395	18	14	846	11	824	735
Msa0339280	AT1G30570.1	44.143	811	410	14	11	791	12	809	665
Msa0339280	AT3G51550.1	44.607	890	410	28	22	846	24	895	660

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Find 198 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGTAGACACTGGATC+CGG	0.579889	2_4:-60363933	Msa0339280:CDS
AAACGTTGATACCGGACTCA+AGG	0.595226	2_4:+60363660	None:intergenic
AAATCAAACCAGATTCTCTT+AGG	0.360801	2_4:-60362031	Msa0339280:CDS
AAATCAGACGTATATTCCTT+TGG	0.372137	2_4:-60362197	Msa0339280:CDS
AAATCCAAGTTCTATAAAGA+GGG	0.575320	2_4:+60363560	None:intergenic
AAATGGTGAACTTAGCAGAA+TGG	0.531613	2_4:-60362115	Msa0339280:CDS
AAATTCAGCAATCCCTTGCT+GGG	0.517967	2_4:+60362637	None:intergenic
AACAAGATTTGAAACATCAG+TGG	0.657322	2_4:+60363504	None:intergenic
AACACCAGATAGATCATCGA+CGG	0.641139	2_4:+60361773	None:intergenic
AACCAATCAAGGACACCAAA+TGG	0.499714	2_4:+60362576	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGCACAAAAACATAACAA+GGG	+	chr2_4:60361785-60361804	None:intergenic	30.0%
AGTTGCACAAAAACATAACA+AGG	+	chr2_4:60361786-60361805	None:intergenic	30.0%
GATAATTACCTTATAGACTG+TGG	-	chr2_4:60361818-60361837	Msa0339280:CDS	30.0%
GAGTTGAAAGTAACTTCTTA+TGG	+	chr2_4:60361895-60361914	None:intergenic	30.0%
ATTCTTGCAGTTTGATAAAG+AGG	+	chr2_4:60361977-60361996	None:intergenic	30.0%
ATAGAATACTCCTTCATAAC+AGG	+	chr2_4:60362169-60362188	None:intergenic	30.0%
GAAATCCAAGTTCTATAAAG+AGG	+	chr2_4:60362412-60362431	None:intergenic	30.0%
ACTGATGTTTCAAATCTTGT+TGG	-	chr2_4:60362466-60362485	Msa0339280:CDS	30.0%
ATCTTAATTTCAATGTGACG+TGG	-	chr2_4:60362587-60362606	Msa0339280:CDS	30.0%
AGAATCCTGATAATATGGAA+CGG	+	chr2_4:60362770-60362789	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	60361725	60364265	60361725	ID=Msa0339280;Name=Msa0339280
chr2_4	mRNA	60361725	60364265	60361725	ID=Msa0339280-mRNA-1;Parent=Msa0339280;Name=Msa0339280-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|846
chr2_4	exon	60361725	60364265	60361725	ID=Msa0339280-mRNA-1:exon:18759;Parent=Msa0339280-mRNA-1
chr2_4	CDS	60361725	60364265	60361725	ID=Msa0339280-mRNA-1:cds;Parent=Msa0339280-mRNA-1

Gene Sequence

>Msa0339280

ATGATGTTGGATTGGAAAAAACATGGTTTGTTTGTCTGTGTTTTGTATATGTTGTTACCCTTGTTATGTTTTTGTGCAACTTTTGTTCCATCAGATAATTACCTTATAGACTGTGGATCAACTACAAGTACTTCAGTTGGTAACCGTAATTTCAGTTCAGATAGTTTCCATAAGAAGTTACTTTCAACTCAGCAAGAGATTCTTGCTAGTACTAGCTCAAAATCTGTTTCTGATGCTGGTGATGAATCACCTCTTTATCAAACTGCAAGAATCTTTACTGGATCTTCAAAGTACACTTTTCCAATTAACCAAAAGGGTAGACACTGGATCCGGTTTTATTTCTTTCCATTTATTTATGATAGATACAATTTGAATGCTGCAAAATTCTCTGTTGCAACACAGACTTTTGTTCTTCTTAGTGGATTTACTGCTCAGAAGAGTCCTGTTATGAAGGAGTATTCTATCAATGTTACAACAGATACTCTTGTGATTACTTTTAAACCTTCTGATGATTCTGTTGCATTTGTGAATGCAATTGAAGTTGTTTCTGTTCCGGATGAACTCATTGCTGATGAGGCTCCTACCTTGAGTCCGGTATCAACGTTTTCTGGATTGGGGTTTCAGGCTTTGGAGACTGTTTGGAGGGTTAACATGGGTGGTCCAGTTGTTACCTCTGGACAGGACCCTCTTTATAGAACTTGGATTTCGGATCAAAAGTATCTTCTACAATCGAGCCTTGCCACTGATGTTTCAAATCTTGTTGGTGTTGATTTTGAGGATGGAGGGCCAACAGAGAACATTGCCCCGCGTAGTGTTTACGGTACTGCCGCAGAGATGAACACGAACCAGAGCGGTGATGCTAATCTTAATTTCAATGTGACGTGGCAGTTTGATACGGAGCCAGGATTTCAATACCTGGTTCGAACTCACTTTTGTGATATAGTCAGTAAAGGTCTCAATCAACTTTATTTCAATGTTTACATTGACTCGTTGACGGCTGCTAAGGATCTTGATCTTGCTTCTAAAAGTAGTAATGTTTTGTCCGTTCCATATTATCAGGATTCTATTACGCCTTTAGCTGACGGCAATAAACTTCGTGTAAGTATTGGCCCTTCCACTTTGAATAAGGACAACCCTAATGCTATTTTGAATGGGCTGGAGATCTTGAAAATGAACAATTCTATAGGCAGTCTAAGTGCAGATGCAGCATCTGGTGCTGGGGGTTCTACTTCTGGTTCGAGTTCTAGCAAGGTTGGTGTGATAGCTGGTGTGAGTGTTGGGGTAGTGAGTGCATTGGTCTTGGCCGGAGTTTTTTGTGTACTGTGCAGGAAAAAGAAGAGGTTGGCAAGACAAAGGCAGTCGAAGACATGGATTCCTTTATCCGTGAATGATGCAACATCCCATACAATGGGAAGTAAATATTCCAATGGCACAACAATAAGTGCTGCTTCGAACTTCGAGTACCGCGTCCCTTTTGCGGAAGTTCAGGAGGGTACAAATAATTTTGATGAGAGTTGGGTTATTGGGGTTGGTGGTTTTGGGAAAGTATACAAGGGAGAGTTAAGGGATGGTAGAAAAGTGGCGGTGAAGAGGGGGAATCCGCGGTCCCAGCAAGGGATTGCTGAATTTAGAACTGAAATTGAAATGTTGTCTCAGTTTCGTCATCGCCATTTGGTGTCCTTGATTGGTTATTGTGATGAAAATAATGAAATGATCCTGATATATGAATACATGGAGAAGGGAACACTCAAGGGTCATCTGTATGGTTTGGGACTCCCGAGCTTAAGTTGGAAGGAGAGACTTGATATATGCATTGGATCTGCCAGAGGACTTCATTACCTTCACACTGGCTATGCTAAAGCGGTTATTCATCGTGACGTGAAGTCTGCAAATATCTTACTTGATGAGAACCTAATGGCTAAAGTTGCTGATTTTGGATTGTCAAAAACCGGTCCCGAGCTCGATCAAACGCACGTGAGCACAGCTGTCAAGGGGAGTTTTGGGTACCTTGATCCAGAGTATTTCAGGAGGCAACAACTGACAGAAAAATCAGACGTATATTCCTTTGGGGTAGTTCTGTTTGAAGTTCTTTGTGCAAGGCCAGTTATAGATCCATCTCTTCCTAGGGAAATGGTGAACTTAGCAGAATGGGCAATGAAATATCAGAAAAAAGGACAGCTGGAGCAAATCATCGATACATCTCTTCAAGGGAAAATCAAACCAGATTCTCTTAGGAAGTTCGCTGAAACTGCTGAGAAATGTTTGGCTGATTATGGTGTTGACAGGCCTTCAATGGGAGATGTCTTGTGGAATTTGGAATATGCGCTTCAACTTCAAGAGGCCGTGGTTCAAGGTGATCCTGAAGAAAACAGTACAAATATGATCGGTGAACTATCTCCACAAGTCAACAATTTCAACCAGGACGCAAATGTTTCTTCTTCTGCCTCTGCCGTGCCATTCGAAGCTTCAACCGTCGATGATCTATCTGGTGTTTCTATGAGTAGGGTATTCTCACAGTTGGTGAAGTCTGAGGGTAGATGA

Protein sequence

>Msa0339280

MMLDWKKHGLFVCVLYMLLPLLCFCATFVPSDNYLIDCGSTTSTSVGNRNFSSDSFHKKLLSTQQEILASTSSKSVSDAGDESPLYQTARIFTGSSKYTFPINQKGRHWIRFYFFPFIYDRYNLNAAKFSVATQTFVLLSGFTAQKSPVMKEYSINVTTDTLVITFKPSDDSVAFVNAIEVVSVPDELIADEAPTLSPVSTFSGLGFQALETVWRVNMGGPVVTSGQDPLYRTWISDQKYLLQSSLATDVSNLVGVDFEDGGPTENIAPRSVYGTAAEMNTNQSGDANLNFNVTWQFDTEPGFQYLVRTHFCDIVSKGLNQLYFNVYIDSLTAAKDLDLASKSSNVLSVPYYQDSITPLADGNKLRVSIGPSTLNKDNPNAILNGLEILKMNNSIGSLSADAASGAGGSTSGSSSSKVGVIAGVSVGVVSALVLAGVFCVLCRKKKRLARQRQSKTWIPLSVNDATSHTMGSKYSNGTTISAASNFEYRVPFAEVQEGTNNFDESWVIGVGGFGKVYKGELRDGRKVAVKRGNPRSQQGIAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILIYEYMEKGTLKGHLYGLGLPSLSWKERLDICIGSARGLHYLHTGYAKAVIHRDVKSANILLDENLMAKVADFGLSKTGPELDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPSLPREMVNLAEWAMKYQKKGQLEQIIDTSLQGKIKPDSLRKFAETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAVVQGDPEENSTNMIGELSPQVNNFNQDANVSSSASAVPFEASTVDDLSGVSMSRVFSQLVKSEGR*