AlfalfaGEDB | Msa1171760

M. sativa cultivar zhongmu-4 / Msa1171760

KEGG: -
GO: GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016043 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0032501 GO:0032502 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0072001 GO:0072189 GO:0072359 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
PFAM: PF13424.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1171760	XP_003601279.1	97.610	795	18	1	1	794	1	795	0.0	1588

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1171760	sp\|F4HSX9\|KLCR3_ARATH	65.809	544	174	4	248	783	103	642	0.0	730
Msa1171760	sp\|F4HSX9\|KLCR3_ARATH	48.148	81	42	0	81	161	14	94	1.63e-14	81.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1171760	G7J5H3	97.610	795	18	1	1	794	1	795	0.0	1588

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0055070	Msa1171760	0.820170	7.902551e-53	-8.615850e-47
Msa0101020	Msa1171760	0.820812	5.627962e-53	-8.615850e-47
Msa0119320	Msa1171760	0.823971	1.039261e-53	-8.615850e-47
Msa0145110	Msa1171760	0.830536	2.778555e-55	-8.615850e-47
Msa0164460	Msa1171760	0.815413	9.364990e-52	-8.615850e-47
Msa0193540	Msa1171760	0.821980	3.026100e-53	-8.615850e-47
Msa0229940	Msa1171760	0.800735	1.253628e-48	-8.615850e-47
Msa0235470	Msa1171760	0.805736	1.155834e-49	-8.615850e-47
Msa0274630	Msa1171760	0.826269	2.975793e-54	-8.615850e-47
Msa0314060	Msa1171760	0.807721	4.401100e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1171760	MtrunA17_Chr3g0117701	98.175	767	14	0	28	794	1	767	0.0	1545
Msa1171760	MtrunA17_Chr4g0059101	71.773	581	162	2	203	781	88	668	0.0	853
Msa1171760	MtrunA17_Chr6g0450741	64.875	558	181	5	240	793	152	698	0.0	734
Msa1171760	MtrunA17_Chr6g0450741	51.724	116	45	3	44	149	8	122	4.13e-20	95.5
Msa1171760	MtrunA17_Chr8g0388631	62.795	508	188	1	279	785	64	571	0.0	691
Msa1171760	MtrunA17_Chr8g0346601	60.990	505	195	1	280	784	52	554	0.0	654
Msa1171760	MtrunA17_Chr1g0184181	26.523	509	358	6	272	773	83	582	1.03e-42	164

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1171760	AT1G27500.2	65.809	544	174	4	248	783	114	653	0.0	730
Msa1171760	AT1G27500.2	48.148	81	42	0	81	161	25	105	1.58e-15	81.3
Msa1171760	AT1G27500.1	65.809	544	174	4	248	783	103	642	0.0	730
Msa1171760	AT1G27500.1	48.148	81	42	0	81	161	14	94	1.66e-15	81.3
Msa1171760	AT3G27960.1	63.419	544	188	3	256	788	114	657	0.0	710
Msa1171760	AT3G27960.1	43.182	132	51	5	40	170	4	112	3.88e-12	70.5
Msa1171760	AT3G27960.3	63.419	544	188	3	256	788	114	657	0.0	710
Msa1171760	AT3G27960.3	43.182	132	51	5	40	170	4	112	3.88e-12	70.5
Msa1171760	AT4G10840.1	57.739	575	224	6	222	785	25	591	0.0	668
Msa1171760	AT3G27960.2	63.617	481	164	3	256	725	114	594	0.0	637

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Find 223 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAATCATTGAAAAG+TGG	0.511725	8_1:-1685551	Msa1171760:three_prime_UTR
AAACAAACTAGAGGAGTTAA+TGG	0.352716	8_1:-1687822	Msa1171760:CDS
AAACCACTGAATTCAAGGTT+GGG	0.523272	8_1:-1687933	Msa1171760:CDS
AAACGGGGTTCATGGCGATG+GGG	0.651726	8_1:-1688471	Msa1171760:CDS
AAAGAATCAAGTTTCTTTAA+AGG	0.155018	8_1:+1685675	None:intergenic
AAATGGCCAAGAAGCCGAAG+TGG	0.644324	8_1:-1687094	Msa1171760:CDS
AAGAGGAGGTGGAGGTGGAG+GGG	0.369474	8_1:-1688157	Msa1171760:CDS
AAGCGTTGGTCCTAATTTCC+AGG	0.424656	8_1:-1688354	Msa1171760:CDS
AAGCTGGCCCAACATAGCAT+AGG	0.627553	8_1:+1687416	None:intergenic
AAGGTTGAGTGATTTGTTAA+AGG	0.318973	8_1:-1685802	Msa1171760:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAAAAGTAGAAGAAGCCAA+AGG	-	chr8_1:1685359-1685378	Msa1171760:three_prime_UTR	30.0%
ACAGACAACATTTGATCAAA+TGG	+	chr8_1:1685530-1685549	None:intergenic	30.0%
TGATGATAAGAAGTTGGATA+TGG	-	chr8_1:1686155-1686174	Msa1171760:intron	30.0%
AAACAAACTAGAGGAGTTAA+TGG	-	chr8_1:1686408-1686427	Msa1171760:intron	30.0%
GAATTCAAAGAATTCTCCTT+TGG	-	chr8_1:1686437-1686456	Msa1171760:CDS	30.0%
CTTGCTTGCTTTAGTAATAT+CGG	+	chr8_1:1686531-1686550	None:intergenic	30.0%
ATGAAACTGTTTGAGAAGTT+TGG	-	chr8_1:1686609-1686628	Msa1171760:CDS	30.0%
ACATTATTGAATTCTCAAGC+TGG	+	chr8_1:1686833-1686852	None:intergenic	30.0%
TTTGCAATTTAATGAAGCAG+AGG	-	chr8_1:1686953-1686972	Msa1171760:CDS	30.0%
GTCTTATATGTGAAACAAAG+GGG	-	chr8_1:1687060-1687079	Msa1171760:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	1685329	1688923	1685329	ID=Msa1171760;Name=Msa1171760
chr8_1	mRNA	1685329	1688923	1685329	ID=Msa1171760-mRNA-1;Parent=Msa1171760;Name=Msa1171760-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0.5\|0.33\|1\|1\|1\|3\|378\|794
chr8_1	exon	1685329	1685917	1685329	ID=Msa1171760-mRNA-1:exon:615;Parent=Msa1171760-mRNA-1
chr8_1	exon	1686418	1688539	1686418	ID=Msa1171760-mRNA-1:exon:614;Parent=Msa1171760-mRNA-1
chr8_1	exon	1688872	1688923	1688872	ID=Msa1171760-mRNA-1:exon:613;Parent=Msa1171760-mRNA-1
chr8_1	CDS	1688872	1688923	1688872	ID=Msa1171760-mRNA-1:cds;Parent=Msa1171760-mRNA-1
chr8_1	CDS	1686418	1688539	1686418	ID=Msa1171760-mRNA-1:cds;Parent=Msa1171760-mRNA-1
chr8_1	CDS	1685707	1685917	1685707	ID=Msa1171760-mRNA-1:cds;Parent=Msa1171760-mRNA-1
chr8_1	three_prime_UTR	1685329	1685706	1685329	ID=Msa1171760-mRNA-1:three_prime_utr;Parent=Msa1171760-mRNA-1

Gene Sequence

>Msa1171760

ATGAACATTCTTTGTGATGATGAGAACAAAATAAAAGTAGAAGAAGCCAAAGGTATTCTGGATCCTCTGAGAGAATTAAAGATGCCGGGAATTGTTACAAACGGGGTTCATGGCGATGGGGAAGTTAATGAGATGAATGTGAACAATTCTCCCACTAAGGAAAGTTTAACTCCAATCAAGTCTCCAAGGAGTTCAATGAGTCCACAGAGACGTCAAAGCGTTGGTCCTAATTTCCAGGATGATGGGGTTGTTGAGCCTTCGATCGAGCAGCTTTATGAAAATGTGTGTGATATGCAGAGTTCTGATCAGTCGCCCTCGAGACAAAGTTTTGGATCTGACGGTGATGAGTCTAGAATTGATTCGGAATTGCACCATTTGGTTGGGGGACGGATGAGGGAGCTGGAGATAATGGAAGAGGAGGTGGAGGTGGAGGGGGGAAGAAGGCCAGGAGAGAGTTCTAGTGGGGAAACATCTTCTGGAATGGGTAATTTATCTGATGATAAGAAGTTGGATATGGTGGCTGAGATTCAATCTGGTAGTAAAAGTCCGGTGATTGAGATTCAATCTGGTAGTAAAAGTCCGGTGGTTAAGACACGATCTAGTAGTAAAAGTCCGGTTTCCTCAGAAAAAATTGTCAAACCACTGAATTCAAGGTTGGGCTCTGACACTTCACCAAGATCAAAACCCAAAGGAAAAAGTCCTCCTGCTAAAGCTCCTCTGGAGAGAAAGAATGATCAGCCTTTGAGAAAACAAACTAGAGGAGTTAATGGCGTGAAGAATTCAAAGAATTCTCCTTTGGGAAAGTCAGTGTCAATGAGTCGCGTTGAGAATTCGGCTGAATCAGCATTAGATAAACCAGAGCGAGCACCGATATTACTAAAGCAAGCAAGAGATCTTATGTCAACTGGAGATAATCCGCACAAAGCTCTTGAGTTGGCTCTTCAAGCAATGAAACTGTTTGAGAAGTTTGGTAATGGGAAGCCGAGTTTGGAATTGGTTATGTGTTTACATGTTACCGCAGCAATATATTGCAGCCTGGGTCGATATAGTGAGGCAATTCCCATTCTTGAGCGTTCGATTGAGATTCCTGATATCGGGGAAAGTCAACAGCATGCTCTTGCTAAATTTGCCGGTCACATGCAACTTGGAGACACCTATGCTATGTTGGGCCAGCTTGAGAATTCAATAATGTTCTACACTGCTGGTTTTGAAGTCCAGAGGCATATTTTGGGAGAAACAGACCCAAGAGTTGGTGAAACTTGTCGGTATTTGGCTGAAGCTAATGTTCAAGCTTTGCAATTTAATGAAGCAGAGGAGATCTGTCAAATGGCTCTTGACATTCATAGAGAAAATAGTTCGGCCCCATCTATTGAAGAAGCTGCTGATAGGAGGCTCATGGGTCTTATATGTGAAACAAAGGGGAATCATGAAGCAGCTCTTGAACACCTTGTTTTAGCGAGCATGGCAATGGTTGCAAATGGCCAAGAAGCCGAAGTGGCATCTGTTGACTGCAGCATTGGAGACACATACTTATCCCTGTCTCGATATGACGAGGCTGTCTTTGCATATGAAAAAGCATTAGCAGTTTTCAAGACCAGCAAAGGAGAGAATCATCCAGCAGTAGGGTCGGTCTTTGTACGTTTGGCTGACTTGTATAACAGGACAGGGAAGATAAAGGAATCAAAGTCGTATTGCGATAAAGCACTTAAAATATATGAGAATCCAATGCCTGGAGTTACTCCAGAGGAGATTGCTAGCGGTCTTACAAATCTGTCAAGTATCTATGAGTCAATGAATGAGGTTGATCAGGCACTCAAGTTACTGCAGAAAGCATTGGAGATATATAATGATGCCCCTGGTCAGCAAGGAACAATAGCAGGAATCGAAGCTCAGGTGGGGGTTATGTATTACATGTTGGGAAACTATACTGAATCTTATAACACTTTGAAGAAAGCAATCACAAAACTTCGTGCTATTGGAGAGAAGAAATCATCCTTCTTTGGTATTGCTCTTAATCAACTGGGGCTTGCCTGTGTGCAGCGTTATGCCTTAAGGGAAGCTATAGAATTATTTGAGGAAGCAAAGAGTGTTTTGGAACATGAGTTGGGGCCTTATCACCCTGAAACGCTTGGAGTATATAGTAATCTTGCAGGCACGTACGACGCAATTGGAAGGCTGGATGATGCAATTCTAACTTTGGAGCACGTTGTTAGTATGAGGGAGGAAAAGCTCGGGACAGCGAATCCCGACGTGGATGATGAAAAGAGAAGGTTGAGTGATTTGTTAAAGGAAGCCGGTAGAATTCGAAGCAGAAAAGTCAGGTCACTAGAGAACCTTTTTGACGGCGACGCTCGCACTTTAAACAACCTTGTCATCAAGGCCTGA

Protein sequence

>Msa1171760

MNILCDDENKIKVEEAKGILDPLRELKMPGIVTNGVHGDGEVNEMNVNNSPTKESLTPIKSPRSSMSPQRRQSVGPNFQDDGVVEPSIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELHHLVGGRMRELEIMEEEVEVEGGRRPGESSSGETSSGMGNLSDDKKLDMVAEIQSGSKSPVIEIQSGSKSPVVKTRSSSKSPVSSEKIVKPLNSRLGSDTSPRSKPKGKSPPAKAPLERKNDQPLRKQTRGVNGVKNSKNSPLGKSVSMSRVENSAESALDKPERAPILLKQARDLMSTGDNPHKALELALQAMKLFEKFGNGKPSLELVMCLHVTAAIYCSLGRYSEAIPILERSIEIPDIGESQQHALAKFAGHMQLGDTYAMLGQLENSIMFYTAGFEVQRHILGETDPRVGETCRYLAEANVQALQFNEAEEICQMALDIHRENSSAPSIEEAADRRLMGLICETKGNHEAALEHLVLASMAMVANGQEAEVASVDCSIGDTYLSLSRYDEAVFAYEKALAVFKTSKGENHPAVGSVFVRLADLYNRTGKIKESKSYCDKALKIYENPMPGVTPEEIASGLTNLSSIYESMNEVDQALKLLQKALEIYNDAPGQQGTIAGIEAQVGVMYYMLGNYTESYNTLKKAITKLRAIGEKKSSFFGIALNQLGLACVQRYALREAIELFEEAKSVLEHELGPYHPETLGVYSNLAGTYDAIGRLDDAILTLEHVVSMREEKLGTANPDVDDEKRRLSDLLKEAGRIRSRKVRSLENLFDGDARTLNNLVIKA*