AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0511610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511610 MtrunA17_Chr3g0118021 96.049 405 16 0 1 405 1 405 0.0 779
Msa0511610 MtrunA17_Chr1g0154431 47.656 128 58 4 283 405 82 205 8.25e-21 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511610 AT3G49080.1 62.712 295 94 5 121 405 142 430 2.34e-113 338
Msa0511610 AT1G74970.1 46.154 130 57 4 283 405 85 208 4.25e-23 96.7

Find 141 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGAAGATGCTTTGTTTAA+AGG 0.106529 3_4:+61204749 Msa0511610:CDS
GCCTGGTAACGGTAAATTTA+TGG 0.138790 3_4:+61205485 Msa0511610:CDS
GAAATTTGGTCTGTTGTATT+AGG 0.143967 3_4:+61208502 Msa0511610:three_prime_UTR
GTGAAAGGTGGTGGTGTTTC+AGG 0.217283 3_4:+61205618 Msa0511610:CDS
GGTGACTTGATTGCTGCTTC+TGG 0.228441 3_4:+61205216 Msa0511610:CDS
TTTCTTGCTTTGGCCTTTCC+AGG 0.232502 3_4:-61208202 None:intergenic
GATAGTGGAAGTGGTGATTT+TGG 0.265320 3_4:+61204797 Msa0511610:CDS
TTGTTGCTGGAGTAGGGTTT+TGG 0.266144 3_4:-61204530 None:intergenic
AATATTATATAATGGAAATT+TGG 0.269630 3_4:+61208488 Msa0511610:three_prime_UTR
TTTATTCTTGTTGTTGTTGC+TGG 0.280537 3_4:-61204543 None:intergenic
ATAATATTCATTATGTAGTT+AGG 0.300349 3_4:-61208473 None:intergenic
AAATTTGGTCTGTTGTATTA+GGG 0.308221 3_4:+61208503 Msa0511610:three_prime_UTR
GTGAAGGAGGGGAGAGAGTA+AGG 0.324631 3_4:+61204669 Msa0511610:CDS
ACTTGTATTTATGTTTCAAT+TGG 0.328341 3_4:+61208580 Msa0511610:three_prime_UTR
GAGAAAGCGAAGGATGTAAG+AGG 0.337574 3_4:-61204444 None:intergenic
CGGTGAAATGGGGATTGATT+GGG 0.342451 3_4:-61204502 None:intergenic
TGAGCAAGGAAGAGGAGATT+GGG 0.345323 3_4:+61204915 Msa0511610:CDS
GTGAGCAAGGAAGAGGAGAT+TGG 0.349794 3_4:+61204914 Msa0511610:CDS
CTTGTTGTTGTTGCTGGAGT+AGG 0.360074 3_4:-61204537 None:intergenic
CTAAGTGCAGGCCGCAAATC+TGG 0.366420 3_4:-61207992 None:intergenic
GAGCTCATTGCTGTTCTTGA+AGG 0.367151 3_4:+61205001 Msa0511610:CDS
AAAATGGTGGTTAGAAGAAA+AGG 0.368505 3_4:+61204712 Msa0511610:CDS
AGACTAAGACATTGGGGCTC+TGG 0.370218 3_4:+61205580 Msa0511610:CDS
ACATAATGAATATTATATAA+TGG 0.370501 3_4:+61208480 Msa0511610:three_prime_UTR
TTGAGTGTATGGAAGGATTT+CGG 0.378378 3_4:+61204578 Msa0511610:CDS
AGTGAGACAAGTAGATGATA+AGG 0.379415 3_4:+61205407 Msa0511610:CDS
AAAGATCTTAAAGATGTTGA+TGG 0.382922 3_4:+61205276 Msa0511610:CDS
TAATCAATGTTTGGATTTCA+AGG 0.391609 3_4:+61208351 Msa0511610:three_prime_UTR
TTCTCTGAGACTAAGACATT+GGG 0.395628 3_4:+61205573 Msa0511610:CDS
ACGGTGAAATGGGGATTGAT+TGG 0.396800 3_4:-61204503 None:intergenic
ACAAAGATCCGTTGAGTGTA+TGG 0.399577 3_4:+61204567 Msa0511610:CDS
GAAGAAAGTGGAAATCTTGA+TGG 0.402234 3_4:+61204635 Msa0511610:CDS
CAAATCCACCAGAGGTGAAA+TGG 0.404466 3_4:+61205350 Msa0511610:CDS
GCCACTAACTCGTGAAGTTT+AGG 0.405829 3_4:+61204240 Msa0511610:five_prime_UTR
CTCATAATAACACAAATCTA+AGG 0.405939 3_4:-61208400 None:intergenic
CTTGTATTTATGTTTCAATT+GGG 0.407559 3_4:+61208581 Msa0511610:three_prime_UTR
GGCGACGTTGGCGGCGGCGT+AGG 0.413312 3_4:-61204283 None:intergenic
TGAAACACCACCACCTTTCA+CGG 0.413786 3_4:-61205616 None:intergenic
CACAAGTCCCCGATCGGAAT+GGG 0.416497 3_4:+61204218 Msa0511610:five_prime_UTR
TGGAATTTGAAAGAGGATAC+TGG 0.418798 3_4:+61204860 Msa0511610:CDS
ATGTGATGTTAATCAATGTT+TGG 0.421479 3_4:+61208342 Msa0511610:three_prime_UTR
TAGTCTCAGAGAAAGGTCTA+AGG 0.428550 3_4:-61205563 None:intergenic
TGATGATGTGAGCAAGGAAG+AGG 0.436721 3_4:+61204907 Msa0511610:CDS
TAGCAGGGCTTTGCAAAGTT+GGG 0.438793 3_4:+61207967 Msa0511610:CDS
GCAAGTTGGAGCTATACGTT+TGG 0.439544 3_4:+61207940 Msa0511610:CDS
ATGCGCTATGAGAGGAATAC+TGG 0.445921 3_4:+61205327 Msa0511610:CDS
GACTAAGACATTGGGGCTCT+GGG 0.446729 3_4:+61205581 Msa0511610:CDS
TAGACGCTCCATTTCACCTC+TGG 0.447888 3_4:-61205358 None:intergenic
TTAGCAGGGCTTTGCAAAGT+TGG 0.453242 3_4:+61207966 Msa0511610:CDS
GAAACTGAGGTGAAAGATAG+TGG 0.456928 3_4:+61204782 Msa0511610:CDS
ACCTAAACTTCACGAGTTAG+TGG 0.460484 3_4:-61204241 None:intergenic
GGGATGAATGAGGGTGAAGG+AGG 0.460558 3_4:+61204656 Msa0511610:CDS
AAGGGACGTGCCTATGGAAC+CGG 0.462628 3_4:+61205426 Msa0511610:CDS
GTTAGTGGCCCATTCCGATC+GGG 0.464787 3_4:-61204226 None:intergenic
GTGAGACAAGTAGATGATAA+GGG 0.465382 3_4:+61205408 Msa0511610:CDS
CTATACGTTTGGGTATTAGC+AGG 0.467402 3_4:+61207951 Msa0511610:CDS
TTTCTCTGAGACTAAGACAT+TGG 0.467627 3_4:+61205572 Msa0511610:CDS
TAGTGAGAAATGAGTGTTGC+CGG 0.469100 3_4:-61204319 None:intergenic
TATCTGCTCCAACACCAATA+TGG 0.469968 3_4:-61204823 None:intergenic
GGATGAATGAGGGTGAAGGA+GGG 0.470693 3_4:+61204657 Msa0511610:CDS
CAAGTTGGAGCTATACGTTT+GGG 0.473428 3_4:+61207941 Msa0511610:CDS
AGGAGGGGAGAGAGTAAGGA+AGG 0.473689 3_4:+61204673 Msa0511610:CDS
ACCATAAATTTACCGTTACC+AGG 0.475003 3_4:-61205486 None:intergenic
GGTGAAATGGGGATTGATTG+GGG 0.476474 3_4:-61204501 None:intergenic
GATGATAAGGGACGTGCCTA+TGG 0.478544 3_4:+61205420 Msa0511610:CDS
CCTCAAGATTTATGTAATGA+TGG 0.484702 3_4:-61208641 None:intergenic
ACTGCAGGAACGAAAGCTTT+TGG 0.489898 3_4:+61205195 Msa0511610:intron
AAATTATTCGACGAAGAAAG+TGG 0.491627 3_4:+61204623 Msa0511610:CDS
GCTGACGGCGACGTTGGCGG+CGG 0.494831 3_4:-61204289 None:intergenic
TTTGGTGACCATATTGGTGT+TGG 0.496594 3_4:+61204815 Msa0511610:CDS
ACGCTCCATTTCACCTCTGG+TGG 0.497185 3_4:-61205355 None:intergenic
CTACTCTTGAATCCCTCGTC+AGG 0.500706 3_4:-61208165 None:intergenic
TTGTTGTTGTTGCTGGAGTA+GGG 0.500800 3_4:-61204536 None:intergenic
CAGATAATGTTGATGAACCT+TGG 0.500891 3_4:+61204840 Msa0511610:CDS
AGAAAGCGAAGGATGTAAGA+GGG 0.503734 3_4:-61204443 None:intergenic
GATGAATGAGGGTGAAGGAG+GGG 0.504547 3_4:+61204658 Msa0511610:CDS
GGGAATTAAACGAGAAAGCA+TGG 0.511823 3_4:-61204414 None:intergenic
AAATGGTGGTTAGAAGAAAA+GGG 0.512293 3_4:+61204713 Msa0511610:CDS
GCGTCTAAAGCAAGAGGAAG+CGG 0.519797 3_4:+61205374 Msa0511610:CDS
TGAAGTTTAAGAAATTATTG+AGG 0.521773 3_4:-61208298 None:intergenic
TGAACCTTGGAATTTGAAAG+AGG 0.523153 3_4:+61204853 Msa0511610:CDS
GGGATTCAAGAGTAGTAGAA+AGG 0.524223 3_4:+61208173 Msa0511610:CDS
GTATCCTCTTTCAAATTCCA+AGG 0.528823 3_4:-61204857 None:intergenic
TTCATACCACTTCTAAGTGC+AGG 0.531151 3_4:-61208004 None:intergenic
TTCATGACAATAGGGCAAGT+TGG 0.534750 3_4:+61207926 Msa0511610:intron
TTTGGGAAAACGGTGAAATG+GGG 0.538317 3_4:-61204512 None:intergenic
AAAGCTGACGGCGACGTTGG+CGG 0.538561 3_4:-61204292 None:intergenic
GCACAAGTCCCCGATCGGAA+TGG 0.540434 3_4:+61204217 Msa0511610:five_prime_UTR
TTCTCACTATCACAACGAAA+AGG 0.543881 3_4:+61204333 Msa0511610:five_prime_UTR
GAGAAAGCTGACGGCGACGT+TGG 0.546059 3_4:-61204295 None:intergenic
TTCTCTATTTCACTAAGAGG+TGG 0.550263 3_4:-61205303 None:intergenic
AGTAAGGAAGGAAGTTGATG+AGG 0.551852 3_4:+61204685 Msa0511610:CDS
ACGTTGGCGGCGGCGTAGGA+AGG 0.552089 3_4:-61204279 None:intergenic
AGTAGCACGATGATCGAGCA+TGG 0.555558 3_4:-61205538 None:intergenic
TTCTGAACCTCCTCTTGACT+CGG 0.562611 3_4:-61204959 None:intergenic
AATGTCTTAGTCTCAGAGAA+AGG 0.565528 3_4:-61205570 None:intergenic
TATACGTTTGGGTATTAGCA+GGG 0.565628 3_4:+61207952 Msa0511610:CDS
GCACGTGTGTGGGTTCAGCC+TGG 0.568099 3_4:+61205468 Msa0511610:CDS
GATCAGTCGGCTTCCTGACG+AGG 0.573961 3_4:+61208152 Msa0511610:intron
GTAGCACGATGATCGAGCAT+GGG 0.575752 3_4:-61205537 None:intergenic
GTGTGGGTTCAGCCTGGTAA+CGG 0.579940 3_4:+61205474 Msa0511610:CDS
AAGAAAGTGGAAATCTTGAT+GGG 0.580703 3_4:+61204636 Msa0511610:CDS
TTGCGGCCTGCACTTAGAAG+TGG 0.583652 3_4:+61207998 Msa0511610:CDS
GTGAAATGGGGATTGATTGG+GGG 0.584634 3_4:-61204500 None:intergenic
AATGCAGTATAGCACGTGTG+TGG 0.584778 3_4:+61205457 Msa0511610:CDS
AAGATCTTAAAGATGTTGAT+GGG 0.585151 3_4:+61205277 Msa0511610:CDS
AGTTAGTGGCCCATTCCGAT+CGG 0.585404 3_4:-61204227 None:intergenic
AATTGTACCGTGAAAGGTGG+TGG 0.586653 3_4:+61205609 Msa0511610:CDS
AAAGTTGGGAACCAGATTTG+CGG 0.586970 3_4:+61207981 Msa0511610:CDS
GAGCAAGGAAGAGGAGATTG+GGG 0.588175 3_4:+61204916 Msa0511610:CDS
AGATCCGTTGAGTGTATGGA+AGG 0.589095 3_4:+61204571 Msa0511610:CDS
ATCAGTCGGCTTCCTGACGA+GGG 0.589864 3_4:+61208153 Msa0511610:intron
TGGGGAGCTTAATGTTGTCG+AGG 0.591302 3_4:+61204934 Msa0511610:CDS
GGGGAGCTTAATGTTGTCGA+GGG 0.593665 3_4:+61204935 Msa0511610:CDS
AGAGGATGATGATGTGAGCA+AGG 0.595307 3_4:+61204901 Msa0511610:CDS
GAGGTGAAAGATAGTGGAAG+TGG 0.598730 3_4:+61204788 Msa0511610:CDS
GATGGGATGAATGAGGGTGA+AGG 0.601789 3_4:+61204653 Msa0511610:CDS
AGGAATTGATAATGAAACTG+AGG 0.601893 3_4:+61204769 Msa0511610:CDS
ATGGAAGAGAGAGAAAGCGA+AGG 0.602824 3_4:-61204454 None:intergenic
TAGAGAAAATGCGCTATGAG+AGG 0.604354 3_4:+61205319 Msa0511610:CDS
GTCGCCGTCAGCTTTCTCTC+CGG 0.604644 3_4:+61204300 Msa0511610:five_prime_UTR
GGAGGTTCAGAAGCTTGAGA+AGG 0.611036 3_4:+61204970 Msa0511610:CDS
ATGCAGTATAGCACGTGTGT+GGG 0.611437 3_4:+61205458 Msa0511610:CDS
GATGTTAATTGTACCGTGAA+AGG 0.611552 3_4:+61205603 Msa0511610:CDS
GAAGGATTTCGGAGAAGCAG+AGG 0.611626 3_4:+61204589 Msa0511610:CDS
AAATCTTGATGGGATGAATG+AGG 0.612581 3_4:+61204646 Msa0511610:CDS
CAAACTCTCGAGCATTTCGT+CGG 0.612874 3_4:-61205244 None:intergenic
AATCTTGATGGGATGAATGA+GGG 0.616876 3_4:+61204647 Msa0511610:CDS
AAATCCTTCCATACACTCAA+CGG 0.620817 3_4:-61204575 None:intergenic
TTTGTGCACAAGTCCCCGAT+CGG 0.632648 3_4:+61204212 Msa0511610:five_prime_UTR
CGAGGGTCCGAGTCAAGAGG+AGG 0.644556 3_4:+61204952 Msa0511610:CDS
TAGCACGATGATCGAGCATG+GGG 0.649555 3_4:-61205536 None:intergenic
CCATCATTACATAAATCTTG+AGG 0.655184 3_4:+61208641 Msa0511610:three_prime_UTR
TTAGTGGCCCATTCCGATCG+GGG 0.657655 3_4:-61204225 None:intergenic
TGTCGAGGGTCCGAGTCAAG+AGG 0.658139 3_4:+61204949 Msa0511610:CDS
TCTCTGAGACTAAGACATTG+GGG 0.658850 3_4:+61205574 Msa0511610:CDS
GTTGCCGGAGAGAAAGCTGA+CGG 0.666218 3_4:-61204304 None:intergenic
AATGGAGCGTCTAAAGCAAG+AGG 0.669910 3_4:+61205368 Msa0511610:CDS
GTTAATTGTACCGTGAAAGG+TGG 0.683961 3_4:+61205606 Msa0511610:CDS
GACGTGCCTATGGAACCGGA+AGG 0.727860 3_4:+61205430 Msa0511610:CDS
AATACTGGCAAATCCACCAG+AGG 0.729786 3_4:+61205342 Msa0511610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATATAAATAAAATTAT+TGG + chr3_4:61207545-61207564 Msa0511610:intron 0.0%
!! ACATAATGAATATTATATAA+TGG + chr3_4:61208480-61208499 Msa0511610:three_prime_UTR 10.0%
!!! AATATTATATAATGGAAATT+TGG + chr3_4:61208488-61208507 Msa0511610:three_prime_UTR 10.0%
!!! TTTCTTTTTAGTTAAATAAA+AGG + chr3_4:61208616-61208635 Msa0511610:three_prime_UTR 10.0%
!! TAACTTATTAAGCATTTATA+TGG + chr3_4:61206368-61206387 Msa0511610:intron 15.0%
!!! TTCATTTTTAAAATAAAAGC+AGG - chr3_4:61206817-61206836 None:intergenic 15.0%
!!! ACATTTTTTGGTTTTATTTA+GGG + chr3_4:61207100-61207119 Msa0511610:intron 15.0%
!!! TATTTTAGATGCTTTTTATT+TGG - chr3_4:61207469-61207488 None:intergenic 15.0%
!! ATAATATTCATTATGTAGTT+AGG - chr3_4:61208476-61208495 None:intergenic 15.0%
!!! GTTTGTTATTTGTTAGTTTT+AGG + chr3_4:61205050-61205069 Msa0511610:intron 20.0%
!! TAGAAATTTATGCTAATGAT+AGG - chr3_4:61205701-61205720 None:intergenic 20.0%
!!! TTTTGTACTAAATAGTGTAT+TGG + chr3_4:61205875-61205894 Msa0511610:intron 20.0%
!!! TCTAAAACTAGTTTTTTTGT+TGG - chr3_4:61206451-61206470 None:intergenic 20.0%
!! TCATAAATCTAAATGAAAAC+AGG - chr3_4:61206587-61206606 None:intergenic 20.0%
!! AGATAAAGGAAATGAATAAT+AGG - chr3_4:61206711-61206730 None:intergenic 20.0%
!! ATGAAAAATGAAAGAGATAA+AGG - chr3_4:61206725-61206744 None:intergenic 20.0%
!!! TATCTCTTTCATTTTTCATA+TGG + chr3_4:61206726-61206745 Msa0511610:intron 20.0%
!! TAAAACGATTAAAGTAAATG+AGG + chr3_4:61206841-61206860 Msa0511610:intron 20.0%
!!! TTAATTTCCTTGACATTTTT+TGG + chr3_4:61207088-61207107 Msa0511610:intron 20.0%
!! AATAAAACCAAAAAATGTCA+AGG - chr3_4:61207098-61207117 None:intergenic 20.0%
!!! GACATTTTTTGGTTTTATTT+AGG + chr3_4:61207099-61207118 Msa0511610:intron 20.0%
!! TTTAAATGTCAAAATTAGAG+AGG - chr3_4:61207139-61207158 None:intergenic 20.0%
!! TTTAATAAGTCTCCAAATTA+GGG + chr3_4:61207168-61207187 Msa0511610:intron 20.0%
!! ACAATAAATATCAAAGACTT+AGG + chr3_4:61207508-61207527 Msa0511610:intron 20.0%
!! TTTCTTTATTGTTTGATTGT+TGG - chr3_4:61207793-61207812 None:intergenic 20.0%
!! TAAAAGACTAACATGAAAAA+AGG - chr3_4:61208066-61208085 None:intergenic 20.0%
!! TGAAGTTTAAGAAATTATTG+AGG - chr3_4:61208301-61208320 None:intergenic 20.0%
!!! GTGTAGTTATTATTTGTTTT+TGG + chr3_4:61208554-61208573 Msa0511610:three_prime_UTR 20.0%
!! ACTTGTATTTATGTTTCAAT+TGG + chr3_4:61208580-61208599 Msa0511610:three_prime_UTR 20.0%
!! CTTGTATTTATGTTTCAATT+GGG + chr3_4:61208581-61208600 Msa0511610:three_prime_UTR 20.0%
! ATAACAAACTAACAACAGAA+GGG - chr3_4:61205039-61205058 None:intergenic 25.0%
! AATAACAAACTAACAACAGA+AGG - chr3_4:61205040-61205059 None:intergenic 25.0%
! AAAGATCTTAAAGATGTTGA+TGG + chr3_4:61205276-61205295 Msa0511610:CDS 25.0%
! AAGATCTTAAAGATGTTGAT+GGG + chr3_4:61205277-61205296 Msa0511610:CDS 25.0%
!! ATTTTCTCTATTTCACTAAG+AGG - chr3_4:61205309-61205328 None:intergenic 25.0%
! ATTTATGCTAATGATAGGAT+AGG - chr3_4:61205696-61205715 None:intergenic 25.0%
!! TACTTTGGTAATTTGAGTTT+GGG + chr3_4:61205755-61205774 Msa0511610:intron 25.0%
! TACAAAACATTGTCAAATTG+CGG - chr3_4:61205862-61205881 None:intergenic 25.0%
! ATTCAAATTATGCTACGTTA+TGG + chr3_4:61205914-61205933 Msa0511610:intron 25.0%
!! TAAACCAGTGTTGTTAAATA+GGG - chr3_4:61205952-61205971 None:intergenic 25.0%
!!! TATTTAACAACACTGGTTTA+GGG + chr3_4:61205952-61205971 Msa0511610:intron 25.0%
!!! AGTACAGTTTTTAAGAACTA+AGG + chr3_4:61206536-61206555 Msa0511610:intron 25.0%
! AAAAATGAAAGTTCAGCATA+TGG - chr3_4:61206634-61206653 None:intergenic 25.0%
! AAATACAGGTTTCATTAGTT+CGG - chr3_4:61206877-61206896 None:intergenic 25.0%
!!! AGCTTTCTTTTATTTTGATC+AGG + chr3_4:61206940-61206959 Msa0511610:intron 25.0%
! CATGTAAATGCAAGATATAA+GGG + chr3_4:61206972-61206991 Msa0511610:intron 25.0%
! TGAAAAATATGAACTCTACA+AGG + chr3_4:61207055-61207074 Msa0511610:intron 25.0%
! CTTTAATAAGTCTCCAAATT+AGG + chr3_4:61207167-61207186 Msa0511610:intron 25.0%
! GTTGAATATAAGTGTGTATT+TGG - chr3_4:61207765-61207784 None:intergenic 25.0%
! GTTGATTAAGATAATACGAA+GGG - chr3_4:61207897-61207916 None:intergenic 25.0%
!!! TTGAAAACTTTTTCTTGCTT+TGG - chr3_4:61208215-61208234 None:intergenic 25.0%
!! AAGCAAGAAAAAGTTTTCAA+TGG + chr3_4:61208215-61208234 Msa0511610:CDS 25.0%
!! AGCAAGAAAAAGTTTTCAAT+GGG + chr3_4:61208216-61208235 Msa0511610:CDS 25.0%
!!! GCATTTTTTGTTTGGAATTT+TGG + chr3_4:61208271-61208290 Msa0511610:three_prime_UTR 25.0%
! ATGTGATGTTAATCAATGTT+TGG + chr3_4:61208342-61208361 Msa0511610:three_prime_UTR 25.0%
! TAATCAATGTTTGGATTTCA+AGG + chr3_4:61208351-61208370 Msa0511610:three_prime_UTR 25.0%
! CTCATAATAACACAAATCTA+AGG - chr3_4:61208403-61208422 None:intergenic 25.0%
! AAATTTGGTCTGTTGTATTA+GGG + chr3_4:61208503-61208522 Msa0511610:three_prime_UTR 25.0%
!! TTTATTCTTGTTGTTGTTGC+TGG - chr3_4:61204546-61204565 None:intergenic 30.0%
AAATTATTCGACGAAGAAAG+TGG + chr3_4:61204623-61204642 Msa0511610:CDS 30.0%
AAGAAAGTGGAAATCTTGAT+GGG + chr3_4:61204636-61204655 Msa0511610:CDS 30.0%
AAAATGGTGGTTAGAAGAAA+AGG + chr3_4:61204712-61204731 Msa0511610:CDS 30.0%
AAATGGTGGTTAGAAGAAAA+GGG + chr3_4:61204713-61204732 Msa0511610:CDS 30.0%
!! GATGAAGATGCTTTGTTTAA+AGG + chr3_4:61204749-61204768 Msa0511610:CDS 30.0%
!! AGGAATTGATAATGAAACTG+AGG + chr3_4:61204769-61204788 Msa0511610:CDS 30.0%
!!! TGATGTTTTTGGTTTCAAAG+AGG + chr3_4:61204883-61204902 Msa0511610:CDS 30.0%
TAACAAACTAACAACAGAAG+GGG - chr3_4:61205038-61205057 None:intergenic 30.0%
!!! TTAGTTTTAGGCATTGTTGA+AGG + chr3_4:61205062-61205081 Msa0511610:intron 30.0%
ATGTGAAAGTTGAACTTGAA+TGG + chr3_4:61205139-61205158 Msa0511610:intron 30.0%
! TGAACTTGAATGGATTTGAA+TGG + chr3_4:61205149-61205168 Msa0511610:intron 30.0%
CAAACTCAAATTACCAAAGT+AGG - chr3_4:61205756-61205775 None:intergenic 30.0%
! CTACTTTGGTAATTTGAGTT+TGG + chr3_4:61205754-61205773 Msa0511610:intron 30.0%
! ACTTTGGTAATTTGAGTTTG+GGG + chr3_4:61205756-61205775 Msa0511610:intron 30.0%
TTGTTAAATAGGGGTTATAG+CGG - chr3_4:61205942-61205961 None:intergenic 30.0%
! AAACCAGTGTTGTTAAATAG+GGG - chr3_4:61205951-61205970 None:intergenic 30.0%
! CTAAACCAGTGTTGTTAAAT+AGG - chr3_4:61205953-61205972 None:intergenic 30.0%
!! CTATTTAACAACACTGGTTT+AGG + chr3_4:61205951-61205970 Msa0511610:intron 30.0%
! ATTTTGTACTGTATCATGCA+CGG - chr3_4:61206048-61206067 None:intergenic 30.0%
CAAGTATTTGCTTAAGAGAT+TGG + chr3_4:61206186-61206205 Msa0511610:intron 30.0%
!! CCTCTGTTTTTCTTATTCAT+TGG - chr3_4:61206273-61206292 None:intergenic 30.0%
CCAATGAATAAGAAAAACAG+AGG + chr3_4:61206270-61206289 Msa0511610:intron 30.0%
AATAAGAAAAACAGAGGAGA+TGG + chr3_4:61206276-61206295 Msa0511610:intron 30.0%
ATAAGAAAAACAGAGGAGAT+GGG + chr3_4:61206277-61206296 Msa0511610:intron 30.0%
ACACAGTTCTTCAAAGTAAA+CGG - chr3_4:61206564-61206583 None:intergenic 30.0%
ATTATTCACGACCAATGTAT+GGG - chr3_4:61206661-61206680 None:intergenic 30.0%
AATTATTCACGACCAATGTA+TGG - chr3_4:61206662-61206681 None:intergenic 30.0%
ATTCATGAATGATATCGCAA+AGG - chr3_4:61206916-61206935 None:intergenic 30.0%
GCATGTAAATGCAAGATATA+AGG + chr3_4:61206971-61206990 Msa0511610:intron 30.0%
GGGAGAAAATATTTATGAAC+TGG + chr3_4:61206992-61207011 Msa0511610:intron 30.0%
! ATCTTTTTCTTGTGAAAGTG+CGG - chr3_4:61207355-61207374 None:intergenic 30.0%
GGTATAGTCTATATAATGTG+CGG + chr3_4:61207566-61207585 Msa0511610:intron 30.0%
GTATAGTCTATATAATGTGC+GGG + chr3_4:61207567-61207586 Msa0511610:intron 30.0%
CTTTATTGTTTGATTGTTGG+TGG - chr3_4:61207790-61207809 None:intergenic 30.0%
ATACGAAGGGAAAAATGAAT+TGG - chr3_4:61207884-61207903 None:intergenic 30.0%
! CGTTGATTAAGATAATACGA+AGG - chr3_4:61207898-61207917 None:intergenic 30.0%
AAACCTGTTTCATGACAATA+GGG + chr3_4:61207918-61207937 Msa0511610:intron 30.0%
!!! TCATGTTAGTCTTTTACTTG+TGG + chr3_4:61208070-61208089 Msa0511610:intron 30.0%
!!! GTTGAAAGAGTATCATTTTC+TGG + chr3_4:61208245-61208264 Msa0511610:exon 30.0%
!!! AAAGAGTATCATTTTCTGGA+TGG + chr3_4:61208249-61208268 Msa0511610:exon 30.0%
GAAATTTGGTCTGTTGTATT+AGG + chr3_4:61208502-61208521 Msa0511610:three_prime_UTR 30.0%
CTACACAAAAATAAGCAGAA+TGG - chr3_4:61208540-61208559 None:intergenic 30.0%
CCTCAAGATTTATGTAATGA+TGG - chr3_4:61208644-61208663 None:intergenic 30.0%
CCATCATTACATAAATCTTG+AGG + chr3_4:61208641-61208660 Msa0511610:three_prime_UTR 30.0%
TTCTCACTATCACAACGAAA+AGG + chr3_4:61204333-61204352 Msa0511610:five_prime_UTR 35.0%
!!! AGGATGTAAGAGGGTTTTTT+GGG - chr3_4:61204437-61204456 None:intergenic 35.0%
!!! AAGGATGTAAGAGGGTTTTT+TGG - chr3_4:61204438-61204457 None:intergenic 35.0%
! ATTGGGGAAATTAGGGTTTT+TGG - chr3_4:61204480-61204499 None:intergenic 35.0%
!! TTTTGGGAAAACGGTGAAAT+GGG - chr3_4:61204516-61204535 None:intergenic 35.0%
AAATCCTTCCATACACTCAA+CGG - chr3_4:61204578-61204597 None:intergenic 35.0%
TTGAGTGTATGGAAGGATTT+CGG + chr3_4:61204578-61204597 Msa0511610:CDS 35.0%
GAAGAAAGTGGAAATCTTGA+TGG + chr3_4:61204635-61204654 Msa0511610:CDS 35.0%
AAATCTTGATGGGATGAATG+AGG + chr3_4:61204646-61204665 Msa0511610:CDS 35.0%
AATCTTGATGGGATGAATGA+GGG + chr3_4:61204647-61204666 Msa0511610:CDS 35.0%
!! AAGTTGATGAGGAGCAAAAA+TGG + chr3_4:61204696-61204715 Msa0511610:CDS 35.0%
! CAGATAATGTTGATGAACCT+TGG + chr3_4:61204840-61204859 Msa0511610:CDS 35.0%
TGAACCTTGGAATTTGAAAG+AGG + chr3_4:61204853-61204872 Msa0511610:CDS 35.0%
GTATCCTCTTTCAAATTCCA+AGG - chr3_4:61204860-61204879 None:intergenic 35.0%
TGGAATTTGAAAGAGGATAC+TGG + chr3_4:61204860-61204879 Msa0511610:CDS 35.0%
! TTTAGGCATTGTTGAAGGTT+TGG + chr3_4:61205067-61205086 Msa0511610:intron 35.0%
! TTTTGATGTATTGTGACTGC+AGG + chr3_4:61205180-61205199 Msa0511610:intron 35.0%
TTCTCTATTTCACTAAGAGG+TGG - chr3_4:61205306-61205325 None:intergenic 35.0%
AGTGAGACAAGTAGATGATA+AGG + chr3_4:61205407-61205426 Msa0511610:CDS 35.0%
GTGAGACAAGTAGATGATAA+GGG + chr3_4:61205408-61205427 Msa0511610:CDS 35.0%
! TATACTGCATTTTCTCCTTC+CGG - chr3_4:61205448-61205467 None:intergenic 35.0%
ACCATAAATTTACCGTTACC+AGG - chr3_4:61205489-61205508 None:intergenic 35.0%
AATGTCTTAGTCTCAGAGAA+AGG - chr3_4:61205573-61205592 None:intergenic 35.0%
!! TTTCTCTGAGACTAAGACAT+TGG + chr3_4:61205572-61205591 Msa0511610:CDS 35.0%
!! TTCTCTGAGACTAAGACATT+GGG + chr3_4:61205573-61205592 Msa0511610:CDS 35.0%
GATGTTAATTGTACCGTGAA+AGG + chr3_4:61205603-61205622 Msa0511610:CDS 35.0%
TAATGATAGGATAGGACTTC+AGG - chr3_4:61205688-61205707 None:intergenic 35.0%
TTCATGATGAATGCCTACTT+TGG + chr3_4:61205740-61205759 Msa0511610:intron 35.0%
TAACCCCTATTTAACAACAC+TGG + chr3_4:61205945-61205964 Msa0511610:intron 35.0%
GTGCATGATACAGTACAAAA+TGG + chr3_4:61206047-61206066 Msa0511610:intron 35.0%
CATGCATGTTTGACACTTAA+AGG + chr3_4:61206070-61206089 Msa0511610:intron 35.0%
TGAATCTACACATACATGAG+TGG - chr3_4:61206131-61206150 None:intergenic 35.0%
TCATGTATGTGTAGATTCAC+TGG + chr3_4:61206132-61206151 Msa0511610:intron 35.0%
ATACTTGTCTGCTGTATACT+TGG - chr3_4:61206173-61206192 None:intergenic 35.0%
TAAGAAAAACAGAGGAGATG+GGG + chr3_4:61206278-61206297 Msa0511610:intron 35.0%
GGGTTATAGTTAGAGACTAT+AGG + chr3_4:61206305-61206324 Msa0511610:intron 35.0%
AATGATCCAAATGCATCTCT+TGG + chr3_4:61206475-61206494 Msa0511610:intron 35.0%
AAAAGACCAAGAGATGCATT+TGG - chr3_4:61206484-61206503 None:intergenic 35.0%
CACAGTTCTTCAAAGTAAAC+GGG - chr3_4:61206563-61206582 None:intergenic 35.0%
AATGAAAGTTCAGCATATGG+TGG - chr3_4:61206631-61206650 None:intergenic 35.0%
! CATTTTTCTACCCCATACAT+TGG + chr3_4:61206647-61206666 Msa0511610:intron 35.0%
TTATTCACGACCAATGTATG+GGG - chr3_4:61206660-61206679 None:intergenic 35.0%
ACATTGGTCGTGAATAATTG+TGG + chr3_4:61206663-61206682 Msa0511610:intron 35.0%
CGTGAATAATTGTGGTAGTT+TGG + chr3_4:61206671-61206690 Msa0511610:intron 35.0%
! TTCATGTGGCATGATTAGTT+TGG + chr3_4:61206791-61206810 Msa0511610:intron 35.0%
TATGCTAGCATGACAAATAC+AGG - chr3_4:61206891-61206910 None:intergenic 35.0%
ATAAGTCTCCAAATTAGGGA+TGG + chr3_4:61207172-61207191 Msa0511610:intron 35.0%
!! TCTTTTTCTTGTGAAAGTGC+GGG - chr3_4:61207354-61207373 None:intergenic 35.0%
TAATTGCCCGCAAATTTGAA+CGG - chr3_4:61207638-61207657 None:intergenic 35.0%
!! TTGAAAAAAGTGCTGATCTG+AGG + chr3_4:61207829-61207848 Msa0511610:intron 35.0%
GAAACCTGTTTCATGACAAT+AGG + chr3_4:61207917-61207936 Msa0511610:intron 35.0%
TATACGTTTGGGTATTAGCA+GGG + chr3_4:61207952-61207971 Msa0511610:CDS 35.0%
TGTCCTCAAAATTGATCAGT+CGG + chr3_4:61208139-61208158 Msa0511610:intron 35.0%
GTAGTAGAAAGGAAAAAACC+TGG + chr3_4:61208184-61208203 Msa0511610:CDS 35.0%
AGAAAGGAAAAAACCTGGAA+AGG + chr3_4:61208189-61208208 Msa0511610:CDS 35.0%
!!! TCTGGATGGCATTTTTTGTT+TGG + chr3_4:61208263-61208282 Msa0511610:three_prime_UTR 35.0%
! TATGAGTCATTCACGCTTTT+TGG + chr3_4:61208417-61208436 Msa0511610:three_prime_UTR 35.0%
ACCTAAACTTCACGAGTTAG+TGG - chr3_4:61204244-61204263 None:intergenic 40.0%
! TAGTGAGAAATGAGTGTTGC+CGG - chr3_4:61204322-61204341 None:intergenic 40.0%
GGGAATTAAACGAGAAAGCA+TGG - chr3_4:61204417-61204436 None:intergenic 40.0%
AGAAAGCGAAGGATGTAAGA+GGG - chr3_4:61204446-61204465 None:intergenic 40.0%
!! GGGAAATTAGGGTTTTTGGA+TGG - chr3_4:61204476-61204495 None:intergenic 40.0%
TTTGGGAAAACGGTGAAATG+GGG - chr3_4:61204515-61204534 None:intergenic 40.0%
!!! GTTTTGGGAAAACGGTGAAA+TGG - chr3_4:61204517-61204536 None:intergenic 40.0%
! TTGTTGTTGTTGCTGGAGTA+GGG - chr3_4:61204539-61204558 None:intergenic 40.0%
ACAAAGATCCGTTGAGTGTA+TGG + chr3_4:61204567-61204586 Msa0511610:CDS 40.0%
!! AGTAAGGAAGGAAGTTGATG+AGG + chr3_4:61204685-61204704 Msa0511610:CDS 40.0%
TTGATGAGGAGCAAAAATGG+TGG + chr3_4:61204699-61204718 Msa0511610:CDS 40.0%
GAAACTGAGGTGAAAGATAG+TGG + chr3_4:61204782-61204801 Msa0511610:CDS 40.0%
!!! GATAGTGGAAGTGGTGATTT+TGG + chr3_4:61204797-61204816 Msa0511610:CDS 40.0%
!! GGTGATTTTGGTGACCATAT+TGG + chr3_4:61204809-61204828 Msa0511610:CDS 40.0%
! TTTGGTGACCATATTGGTGT+TGG + chr3_4:61204815-61204834 Msa0511610:CDS 40.0%
TATCTGCTCCAACACCAATA+TGG - chr3_4:61204826-61204845 None:intergenic 40.0%
!! GAGGATACTGGTGATGTTTT+TGG + chr3_4:61204872-61204891 Msa0511610:CDS 40.0%
! CATTGCTGTTCTTGAAGGTT+TGG + chr3_4:61205006-61205025 Msa0511610:intron 40.0%
TAGAGAAAATGCGCTATGAG+AGG + chr3_4:61205319-61205338 Msa0511610:CDS 40.0%
!! GCCTGGTAACGGTAAATTTA+TGG + chr3_4:61205485-61205504 Msa0511610:CDS 40.0%
TAGTCTCAGAGAAAGGTCTA+AGG - chr3_4:61205566-61205585 None:intergenic 40.0%
!! TCTCTGAGACTAAGACATTG+GGG + chr3_4:61205574-61205593 Msa0511610:CDS 40.0%
GTTAATTGTACCGTGAAAGG+TGG + chr3_4:61205606-61205625 Msa0511610:CDS 40.0%
ACTACTCAACAGTGCTATAG+CGG + chr3_4:61205828-61205847 Msa0511610:intron 40.0%
!! AACAACACTGGTTTAGGGTA+TGG + chr3_4:61205957-61205976 Msa0511610:intron 40.0%
TATGGCGACTGTAGAGTATA+CGG + chr3_4:61205975-61205994 Msa0511610:intron 40.0%
!! ACACATACATGAGTGGATTG+TGG - chr3_4:61206124-61206143 None:intergenic 40.0%
GTATGTGTAGATTCACTGGT+TGG + chr3_4:61206136-61206155 Msa0511610:intron 40.0%
!! AGTGAGAATGAGAAGCATCT+AGG + chr3_4:61206231-61206250 Msa0511610:intron 40.0%
TAGTTAGAGACTATAGGCAG+AGG + chr3_4:61206311-61206330 Msa0511610:intron 40.0%
!!! GAGAGCTACTTTTCTTCATG+TGG + chr3_4:61206777-61206796 Msa0511610:intron 40.0%
TCCAAATTAGGGATGGCAAT+GGG + chr3_4:61207179-61207198 Msa0511610:intron 40.0%
! TTTTCTTAAAGCGCGGGTAT+GGG - chr3_4:61207237-61207256 None:intergenic 40.0%
! ATTTTCTTAAAGCGCGGGTA+TGG - chr3_4:61207238-61207257 None:intergenic 40.0%
! ATGGGGATTTTCTTAAAGCG+CGG - chr3_4:61207244-61207263 None:intergenic 40.0%
ACCAAACTTATTGCCCAAGA+GGG - chr3_4:61207280-61207299 None:intergenic 40.0%
TTAGATACCCATAGGGTATG+GGG - chr3_4:61207309-61207328 None:intergenic 40.0%
CTTAGATACCCATAGGGTAT+GGG - chr3_4:61207310-61207329 None:intergenic 40.0%
ACTTAGATACCCATAGGGTA+TGG - chr3_4:61207311-61207330 None:intergenic 40.0%
TCTATATAATGTGCGGGCAT+GGG + chr3_4:61207573-61207592 Msa0511610:intron 40.0%
AATTGCCCGCAAATTTGAAC+GGG - chr3_4:61207637-61207656 None:intergenic 40.0%
GCAAAAAATACCCATATGGC+GGG - chr3_4:61207703-61207722 None:intergenic 40.0%
CGCAAAAAATACCCATATGG+CGG - chr3_4:61207704-61207723 None:intergenic 40.0%
!!! CGCCATATGGGTATTTTTTG+CGG + chr3_4:61207702-61207721 Msa0511610:intron 40.0%
!!! GCCATATGGGTATTTTTTGC+GGG + chr3_4:61207703-61207722 Msa0511610:intron 40.0%
ACCCGCAAAAAATACCCATA+TGG - chr3_4:61207707-61207726 None:intergenic 40.0%
! TTTGGAGTAGAGATGGCAAT+TGG - chr3_4:61207747-61207766 None:intergenic 40.0%
! GTGTGTATTTGGAGTAGAGA+TGG - chr3_4:61207754-61207773 None:intergenic 40.0%
TTGCCCTATTGTCATGAAAC+AGG - chr3_4:61207924-61207943 None:intergenic 40.0%
TTCATGACAATAGGGCAAGT+TGG + chr3_4:61207926-61207945 Msa0511610:intron 40.0%
! CAAGTTGGAGCTATACGTTT+GGG + chr3_4:61207941-61207960 Msa0511610:CDS 40.0%
CTATACGTTTGGGTATTAGC+AGG + chr3_4:61207951-61207970 Msa0511610:CDS 40.0%
AAAGTTGGGAACCAGATTTG+CGG + chr3_4:61207981-61208000 Msa0511610:CDS 40.0%
TTCATACCACTTCTAAGTGC+AGG - chr3_4:61208007-61208026 None:intergenic 40.0%
! AAGCCGACTGATCAATTTTG+AGG - chr3_4:61208145-61208164 None:intergenic 40.0%
GGGATTCAAGAGTAGTAGAA+AGG + chr3_4:61208173-61208192 Msa0511610:CDS 40.0%
GCCACTAACTCGTGAAGTTT+AGG + chr3_4:61204240-61204259 Msa0511610:five_prime_UTR 45.0%
GAGAAAGCGAAGGATGTAAG+AGG - chr3_4:61204447-61204466 None:intergenic 45.0%
ATGGAAGAGAGAGAAAGCGA+AGG - chr3_4:61204457-61204476 None:intergenic 45.0%
TTGGGGGATTGGGGAAATTA+GGG - chr3_4:61204487-61204506 None:intergenic 45.0%
ATTGGGGGATTGGGGAAATT+AGG - chr3_4:61204488-61204507 None:intergenic 45.0%
GTGAAATGGGGATTGATTGG+GGG - chr3_4:61204503-61204522 None:intergenic 45.0%
GGTGAAATGGGGATTGATTG+GGG - chr3_4:61204504-61204523 None:intergenic 45.0%
CGGTGAAATGGGGATTGATT+GGG - chr3_4:61204505-61204524 None:intergenic 45.0%
ACGGTGAAATGGGGATTGAT+TGG - chr3_4:61204506-61204525 None:intergenic 45.0%
!!! GGAGTAGGGTTTTGGGAAAA+CGG - chr3_4:61204525-61204544 None:intergenic 45.0%
! TGTTGCTGGAGTAGGGTTTT+GGG - chr3_4:61204532-61204551 None:intergenic 45.0%
! TTGTTGCTGGAGTAGGGTTT+TGG - chr3_4:61204533-61204552 None:intergenic 45.0%
!! CTTGTTGTTGTTGCTGGAGT+AGG - chr3_4:61204540-61204559 None:intergenic 45.0%
AGATCCGTTGAGTGTATGGA+AGG + chr3_4:61204571-61204590 Msa0511610:CDS 45.0%
!! GAGGTGAAAGATAGTGGAAG+TGG + chr3_4:61204788-61204807 Msa0511610:CDS 45.0%
! AGAGGATGATGATGTGAGCA+AGG + chr3_4:61204901-61204920 Msa0511610:CDS 45.0%
! TGATGATGTGAGCAAGGAAG+AGG + chr3_4:61204907-61204926 Msa0511610:CDS 45.0%
TGAGCAAGGAAGAGGAGATT+GGG + chr3_4:61204915-61204934 Msa0511610:CDS 45.0%
TTCTGAACCTCCTCTTGACT+CGG - chr3_4:61204962-61204981 None:intergenic 45.0%
! GAGCTCATTGCTGTTCTTGA+AGG + chr3_4:61205001-61205020 Msa0511610:CDS 45.0%
! ACTGCAGGAACGAAAGCTTT+TGG + chr3_4:61205195-61205214 Msa0511610:intron 45.0%
CAAACTCTCGAGCATTTCGT+CGG - chr3_4:61205247-61205266 None:intergenic 45.0%
ATGCGCTATGAGAGGAATAC+TGG + chr3_4:61205327-61205346 Msa0511610:CDS 45.0%
AATACTGGCAAATCCACCAG+AGG + chr3_4:61205342-61205361 Msa0511610:CDS 45.0%
CAAATCCACCAGAGGTGAAA+TGG + chr3_4:61205350-61205369 Msa0511610:CDS 45.0%
! AATGGAGCGTCTAAAGCAAG+AGG + chr3_4:61205368-61205387 Msa0511610:CDS 45.0%
! TTTTCTCCTTCCGGTTCCAT+AGG - chr3_4:61205439-61205458 None:intergenic 45.0%
AATGCAGTATAGCACGTGTG+TGG + chr3_4:61205457-61205476 Msa0511610:CDS 45.0%
ATGCAGTATAGCACGTGTGT+GGG + chr3_4:61205458-61205477 Msa0511610:CDS 45.0%
AATTGTACCGTGAAAGGTGG+TGG + chr3_4:61205609-61205628 Msa0511610:CDS 45.0%
TGAAACACCACCACCTTTCA+CGG - chr3_4:61205619-61205638 None:intergenic 45.0%
GCTATAGCACTGTTGAGTAG+TGG - chr3_4:61205829-61205848 None:intergenic 45.0%
CATACTGCATGCCACTATTC+TGG + chr3_4:61206016-61206035 Msa0511610:intron 45.0%
CACGGAATATGCCAGAATAG+TGG - chr3_4:61206030-61206049 None:intergenic 45.0%
CTCCAAATTAGGGATGGCAA+TGG + chr3_4:61207178-61207197 Msa0511610:intron 45.0%
ACCCATTGCCATCCCTAATT+TGG - chr3_4:61207183-61207202 None:intergenic 45.0%
TTTCTTAAAGCGCGGGTATG+GGG - chr3_4:61207236-61207255 None:intergenic 45.0%
! TGGGGATTTTCTTAAAGCGC+GGG - chr3_4:61207243-61207262 None:intergenic 45.0%
! CTTATTGCCCAAGAGGGTAT+GGG - chr3_4:61207274-61207293 None:intergenic 45.0%
ACTTATTGCCCAAGAGGGTA+TGG - chr3_4:61207275-61207294 None:intergenic 45.0%
ACCCTCTTGGGCAATAAGTT+TGG + chr3_4:61207276-61207295 Msa0511610:intron 45.0%
CACCAAACTTATTGCCCAAG+AGG - chr3_4:61207281-61207300 None:intergenic 45.0%
! CTTGTGAAAGTGCGGGTAAT+GGG - chr3_4:61207347-61207366 None:intergenic 45.0%
! TCTTGTGAAAGTGCGGGTAA+TGG - chr3_4:61207348-61207367 None:intergenic 45.0%
GTCTATATAATGTGCGGGCA+TGG + chr3_4:61207572-61207591 Msa0511610:intron 45.0%
CTATATAATGTGCGGGCATG+GGG + chr3_4:61207574-61207593 Msa0511610:intron 45.0%
AATTTGAACGGGTATGGGTG+CGG - chr3_4:61207626-61207645 None:intergenic 45.0%
CCGCAAATTTGAACGGGTAT+GGG - chr3_4:61207631-61207650 None:intergenic 45.0%
CCCATACCCGTTCAAATTTG+CGG + chr3_4:61207628-61207647 Msa0511610:intron 45.0%
CCATACCCGTTCAAATTTGC+GGG + chr3_4:61207629-61207648 Msa0511610:intron 45.0%
ATACCCGCATTGTTGGGTAT+GGG - chr3_4:61207673-61207692 None:intergenic 45.0%
AATACCCGCATTGTTGGGTA+TGG - chr3_4:61207674-61207693 None:intergenic 45.0%
GGGTAAATACCCGCATTGTT+GGG - chr3_4:61207679-61207698 None:intergenic 45.0%
! AAAAATACCCATATGGCGGG+CGG - chr3_4:61207700-61207719 None:intergenic 45.0%
!!! TATTTTTTGCGGGTGCCCAT+TGG + chr3_4:61207713-61207732 Msa0511610:intron 45.0%
!!! ATTTTTTGCGGGTGCCCATT+GGG + chr3_4:61207714-61207733 Msa0511610:intron 45.0%
! GCAAGTTGGAGCTATACGTT+TGG + chr3_4:61207940-61207959 Msa0511610:CDS 45.0%
TTAGCAGGGCTTTGCAAAGT+TGG + chr3_4:61207966-61207985 Msa0511610:CDS 45.0%
TAGCAGGGCTTTGCAAAGTT+GGG + chr3_4:61207967-61207986 Msa0511610:CDS 45.0%
GCCATGCTGTATATGTGCTT+CGG + chr3_4:61208092-61208111 Msa0511610:intron 45.0%
! TTTCTTGCTTTGGCCTTTCC+AGG - chr3_4:61208205-61208224 None:intergenic 45.0%
TTTGTGCACAAGTCCCCGAT+CGG + chr3_4:61204212-61204231 Msa0511610:five_prime_UTR 50.0%
AGTTAGTGGCCCATTCCGAT+CGG - chr3_4:61204230-61204249 None:intergenic 50.0%
TGGGGATTGATTGGGGGATT+GGG - chr3_4:61204497-61204516 None:intergenic 50.0%
ATGGGGATTGATTGGGGGAT+TGG - chr3_4:61204498-61204517 None:intergenic 50.0%
GAAGGATTTCGGAGAAGCAG+AGG + chr3_4:61204589-61204608 Msa0511610:CDS 50.0%
GATGGGATGAATGAGGGTGA+AGG + chr3_4:61204653-61204672 Msa0511610:CDS 50.0%
GGATGAATGAGGGTGAAGGA+GGG + chr3_4:61204657-61204676 Msa0511610:CDS 50.0%
GATGAATGAGGGTGAAGGAG+GGG + chr3_4:61204658-61204677 Msa0511610:CDS 50.0%
GTGAGCAAGGAAGAGGAGAT+TGG + chr3_4:61204914-61204933 Msa0511610:CDS 50.0%
GAGCAAGGAAGAGGAGATTG+GGG + chr3_4:61204916-61204935 Msa0511610:CDS 50.0%
TGGGGAGCTTAATGTTGTCG+AGG + chr3_4:61204934-61204953 Msa0511610:CDS 50.0%
GGGGAGCTTAATGTTGTCGA+GGG + chr3_4:61204935-61204954 Msa0511610:CDS 50.0%
GGAGGTTCAGAAGCTTGAGA+AGG + chr3_4:61204970-61204989 Msa0511610:CDS 50.0%
! GGTGACTTGATTGCTGCTTC+TGG + chr3_4:61205216-61205235 Msa0511610:CDS 50.0%
TAGACGCTCCATTTCACCTC+TGG - chr3_4:61205361-61205380 None:intergenic 50.0%
! GCGTCTAAAGCAAGAGGAAG+CGG + chr3_4:61205374-61205393 Msa0511610:CDS 50.0%
GATGATAAGGGACGTGCCTA+TGG + chr3_4:61205420-61205439 Msa0511610:CDS 50.0%
TAGCACGATGATCGAGCATG+GGG - chr3_4:61205539-61205558 None:intergenic 50.0%
GTAGCACGATGATCGAGCAT+GGG - chr3_4:61205540-61205559 None:intergenic 50.0%
AGTAGCACGATGATCGAGCA+TGG - chr3_4:61205541-61205560 None:intergenic 50.0%
AGACTAAGACATTGGGGCTC+TGG + chr3_4:61205580-61205599 Msa0511610:CDS 50.0%
GACTAAGACATTGGGGCTCT+GGG + chr3_4:61205581-61205600 Msa0511610:CDS 50.0%
! GTGAAAGGTGGTGGTGTTTC+AGG + chr3_4:61205618-61205637 Msa0511610:CDS 50.0%
TGGGGCAGTGTTGTCAATTG+TGG + chr3_4:61205774-61205793 Msa0511610:intron 50.0%
AAACAGAGGAGATGGGGAGT+TGG + chr3_4:61206284-61206303 Msa0511610:intron 50.0%
AACAGAGGAGATGGGGAGTT+GGG + chr3_4:61206285-61206304 Msa0511610:intron 50.0%
TAGAGACTATAGGCAGAGGC+AGG + chr3_4:61206315-61206334 Msa0511610:intron 50.0%
AGAGACTATAGGCAGAGGCA+GGG + chr3_4:61206316-61206335 Msa0511610:intron 50.0%
GATGGCAATGGGTACCCATT+GGG + chr3_4:61207190-61207209 Msa0511610:intron 50.0%
ATGGCAATGGGTACCCATTG+GGG + chr3_4:61207191-61207210 Msa0511610:intron 50.0%
ACTATGGTACCCTCCCCAAT+GGG - chr3_4:61207207-61207226 None:intergenic 50.0%
ATACCCATAGGGTATGGGGA+CGG - chr3_4:61207305-61207324 None:intergenic 50.0%
CGGGCACTTAGATACCCATA+GGG - chr3_4:61207316-61207335 None:intergenic 50.0%
ACGGGCACTTAGATACCCAT+AGG - chr3_4:61207317-61207336 None:intergenic 50.0%
ATTTGAACGGGTATGGGTGC+GGG - chr3_4:61207625-61207644 None:intergenic 50.0%
CCCGCAAATTTGAACGGGTA+TGG - chr3_4:61207632-61207651 None:intergenic 50.0%
GCATTGTTGGGTATGGGCTT+GGG - chr3_4:61207667-61207686 None:intergenic 50.0%
CAAGCCCATACCCAACAATG+CGG + chr3_4:61207666-61207685 Msa0511610:intron 50.0%
AAGCCCATACCCAACAATGC+GGG + chr3_4:61207667-61207686 Msa0511610:intron 50.0%
CGGGTAAATACCCGCATTGT+TGG - chr3_4:61207680-61207699 None:intergenic 50.0%
TATTTACCCGCCCGCCATAT+GGG + chr3_4:61207690-61207709 Msa0511610:intron 50.0%
!! AAAATACCCATATGGCGGGC+GGG - chr3_4:61207699-61207718 None:intergenic 50.0%
CAATTGGACCCAAGCCCAAT+GGG - chr3_4:61207731-61207750 None:intergenic 50.0%
GCCGAAGCACATATACAGCA+TGG - chr3_4:61208096-61208115 None:intergenic 50.0%
CTACTCTTGAATCCCTCGTC+AGG - chr3_4:61208168-61208187 None:intergenic 50.0%
CACAAGTCCCCGATCGGAAT+GGG + chr3_4:61204218-61204237 Msa0511610:five_prime_UTR 55.0%
TTAGTGGCCCATTCCGATCG+GGG - chr3_4:61204228-61204247 None:intergenic 55.0%
GTTAGTGGCCCATTCCGATC+GGG - chr3_4:61204229-61204248 None:intergenic 55.0%
GTTGCCGGAGAGAAAGCTGA+CGG - chr3_4:61204307-61204326 None:intergenic 55.0%
GGGGATTGATTGGGGGATTG+GGG - chr3_4:61204496-61204515 None:intergenic 55.0%
GGGATGAATGAGGGTGAAGG+AGG + chr3_4:61204656-61204675 Msa0511610:CDS 55.0%
GTGAAGGAGGGGAGAGAGTA+AGG + chr3_4:61204669-61204688 Msa0511610:CDS 55.0%
AGGAGGGGAGAGAGTAAGGA+AGG + chr3_4:61204673-61204692 Msa0511610:CDS 55.0%
ACGCTCCATTTCACCTCTGG+TGG - chr3_4:61205358-61205377 None:intergenic 55.0%
AAGGGACGTGCCTATGGAAC+CGG + chr3_4:61205426-61205445 Msa0511610:CDS 55.0%
GTGTGGGTTCAGCCTGGTAA+CGG + chr3_4:61205474-61205493 Msa0511610:CDS 55.0%
TATAGGCAGAGGCAGGGTAG+CGG + chr3_4:61206322-61206341 Msa0511610:intron 55.0%
GGATGGCAATGGGTACCCAT+TGG + chr3_4:61207189-61207208 Msa0511610:intron 55.0%
CAATGGGTACCCATTGGGGA+GGG + chr3_4:61207195-61207214 Msa0511610:intron 55.0%
CACTATGGTACCCTCCCCAA+TGG - chr3_4:61207208-61207227 None:intergenic 55.0%
TAAAGCGCGGGTATGGGGAT+GGG - chr3_4:61207231-61207250 None:intergenic 55.0%
TTAAAGCGCGGGTATGGGGA+TGG - chr3_4:61207232-61207251 None:intergenic 55.0%
TACCCATAGGGTATGGGGAC+GGG - chr3_4:61207304-61207323 None:intergenic 55.0%
!! AAAGTGCGGGTAATGGGTGC+GGG - chr3_4:61207341-61207360 None:intergenic 55.0%
!! GAAAGTGCGGGTAATGGGTG+CGG - chr3_4:61207342-61207361 None:intergenic 55.0%
TATAATGTGCGGGCATGGGG+CGG + chr3_4:61207577-61207596 Msa0511610:intron 55.0%
CGCATTGTTGGGTATGGGCT+TGG - chr3_4:61207668-61207687 None:intergenic 55.0%
GTATTTACCCGCCCGCCATA+TGG + chr3_4:61207689-61207708 Msa0511610:intron 55.0%
GCAATTGGACCCAAGCCCAA+TGG - chr3_4:61207732-61207751 None:intergenic 55.0%
CTAAGTGCAGGCCGCAAATC+TGG - chr3_4:61207995-61208014 None:intergenic 55.0%
TTGCGGCCTGCACTTAGAAG+TGG + chr3_4:61207998-61208017 Msa0511610:CDS 55.0%
! ATCAGTCGGCTTCCTGACGA+GGG + chr3_4:61208153-61208172 Msa0511610:intron 55.0%
GCACAAGTCCCCGATCGGAA+TGG + chr3_4:61204217-61204236 Msa0511610:five_prime_UTR 60.0%
AAAGCTGACGGCGACGTTGG+CGG - chr3_4:61204295-61204314 None:intergenic 60.0%
GAGAAAGCTGACGGCGACGT+TGG - chr3_4:61204298-61204317 None:intergenic 60.0%
GTCGCCGTCAGCTTTCTCTC+CGG + chr3_4:61204300-61204319 Msa0511610:five_prime_UTR 60.0%
TGTCGAGGGTCCGAGTCAAG+AGG + chr3_4:61204949-61204968 Msa0511610:CDS 60.0%
GACGTGCCTATGGAACCGGA+AGG + chr3_4:61205430-61205449 Msa0511610:CDS 60.0%
ATAGGCAGAGGCAGGGTAGC+GGG + chr3_4:61206323-61206342 Msa0511610:intron 60.0%
GCAATGGGTACCCATTGGGG+AGG + chr3_4:61207194-61207213 Msa0511610:intron 60.0%
GGGTATGGGGATGGGCACTA+TGG - chr3_4:61207223-61207242 None:intergenic 60.0%
AGGGTATGGGCTCGGGTATG+GGG - chr3_4:61207261-61207280 None:intergenic 60.0%
! GAGGGTATGGGCTCGGGTAT+GGG - chr3_4:61207262-61207281 None:intergenic 60.0%
! AGAGGGTATGGGCTCGGGTA+TGG - chr3_4:61207263-61207282 None:intergenic 60.0%
TACCCGAGCCCATACCCTCT+TGG + chr3_4:61207263-61207282 Msa0511610:intron 60.0%
ACCCGAGCCCATACCCTCTT+GGG + chr3_4:61207264-61207283 Msa0511610:intron 60.0%
! TGCCCAAGAGGGTATGGGCT+CGG - chr3_4:61207269-61207288 None:intergenic 60.0%
TGCCCGTCCCCATACCCTAT+GGG + chr3_4:61207299-61207318 Msa0511610:intron 60.0%
ATAATGTGCGGGCATGGGGC+GGG + chr3_4:61207578-61207597 Msa0511610:intron 60.0%
AACGGGTATGGGTGCGGGTA+CGG - chr3_4:61207620-61207639 None:intergenic 60.0%
TTGGGTATGGGCTTGGGCAC+GGG - chr3_4:61207661-61207680 None:intergenic 60.0%
GTTGGGTATGGGCTTGGGCA+CGG - chr3_4:61207662-61207681 None:intergenic 60.0%
! GATCAGTCGGCTTCCTGACG+AGG + chr3_4:61208152-61208171 Msa0511610:intron 60.0%
CGAGGGTCCGAGTCAAGAGG+AGG + chr3_4:61204952-61204971 Msa0511610:CDS 65.0%
GCACGTGTGTGGGTTCAGCC+TGG + chr3_4:61205468-61205487 Msa0511610:CDS 65.0%
TAGGCAGAGGCAGGGTAGCG+GGG + chr3_4:61206324-61206343 Msa0511610:intron 65.0%
!! CAGGGTAGCGGGGCAGAGAT+GGG + chr3_4:61206334-61206353 Msa0511610:intron 65.0%
!! GCGGGGCAGAGATGGGTTAC+TGG + chr3_4:61206341-61206360 Msa0511610:intron 65.0%
! GCCCAAGAGGGTATGGGCTC+GGG - chr3_4:61207268-61207287 None:intergenic 65.0%
GTGCCCGTCCCCATACCCTA+TGG + chr3_4:61207298-61207317 Msa0511610:intron 65.0%
!! CGGGTAATGGGTGCGGGTAC+GGG - chr3_4:61207335-61207354 None:intergenic 65.0%
!! GCGGGTAATGGGTGCGGGTA+CGG - chr3_4:61207336-61207355 None:intergenic 65.0%
TAATGTGCGGGCATGGGGCG+GGG + chr3_4:61207579-61207598 Msa0511610:intron 65.0%
ACGGGTATGGGTGCGGGTAC+GGG - chr3_4:61207619-61207638 None:intergenic 65.0%
TTGCGGGTGCCCATTGGGCT+TGG + chr3_4:61207719-61207738 Msa0511610:intron 65.0%
TGCGGGTGCCCATTGGGCTT+GGG + chr3_4:61207720-61207739 Msa0511610:intron 65.0%
ACGTTGGCGGCGGCGTAGGA+AGG - chr3_4:61204282-61204301 None:intergenic 70.0%
!! GCAGGGTAGCGGGGCAGAGA+TGG + chr3_4:61206333-61206352 Msa0511610:intron 70.0%
GCTGACGGCGACGTTGGCGG+CGG - chr3_4:61204292-61204311 None:intergenic 75.0%
! GGCGACGTTGGCGGCGGCGT+AGG - chr3_4:61204286-61204305 None:intergenic 80.0%
! TGTGCGGGCATGGGGCGGGG+TGG + chr3_4:61207582-61207601 Msa0511610:intron 80.0%
! GTGCGGGCATGGGGCGGGGT+GGG + chr3_4:61207583-61207602 Msa0511610:intron 80.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 61204173 61208664 61204173 ID=Msa0511610;Name=Msa0511610
chr3_4 mRNA 61204173 61208664 61204173 ID=Msa0511610-mRNA-1;Parent=Msa0511610;Name=Msa0511610-mRNA-1;_AED=0.04;_eAED=0.04;_QI=243|1|1|1|1|1|4|415|405
chr3_4 exon 61204173 61205022 61204173 ID=Msa0511610-mRNA-1:exon:14855;Parent=Msa0511610-mRNA-1
chr3_4 exon 61205202 61205639 61205202 ID=Msa0511610-mRNA-1:exon:14856;Parent=Msa0511610-mRNA-1
chr3_4 exon 61207939 61208019 61207939 ID=Msa0511610-mRNA-1:exon:14857;Parent=Msa0511610-mRNA-1
chr3_4 exon 61208158 61208664 61208158 ID=Msa0511610-mRNA-1:exon:14858;Parent=Msa0511610-mRNA-1
chr3_4 five_prime_UTR 61204173 61204415 61204173 ID=Msa0511610-mRNA-1:five_prime_utr;Parent=Msa0511610-mRNA-1
chr3_4 CDS 61204416 61205022 61204416 ID=Msa0511610-mRNA-1:cds;Parent=Msa0511610-mRNA-1
chr3_4 CDS 61205202 61205639 61205202 ID=Msa0511610-mRNA-1:cds;Parent=Msa0511610-mRNA-1
chr3_4 CDS 61207939 61208019 61207939 ID=Msa0511610-mRNA-1:cds;Parent=Msa0511610-mRNA-1
chr3_4 CDS 61208158 61208249 61208158 ID=Msa0511610-mRNA-1:cds;Parent=Msa0511610-mRNA-1
chr3_4 three_prime_UTR 61208250 61208664 61208250 ID=Msa0511610-mRNA-1:three_prime_utr;Parent=Msa0511610-mRNA-1
Gene Sequence

>Msa0511610

ATGCTTTCTCGTTTAATTCCCAAAAAACCCTCTTACATCCTTCGCTTTCTCTCTCTTCCATCCAAAAACCCTAATTTCCCCAATCCCCCAATCAATCCCCATTTCACCGTTTTCCCAAAACCCTACTCCAGCAACAACAACAAGAATAAAAACAAAGATCCGTTGAGTGTATGGAAGGATTTCGGAGAAGCAGAGGAAAAATTCGACAAATTATTCGACGAAGAAAGTGGAAATCTTGATGGGATGAATGAGGGTGAAGGAGGGGAGAGAGTAAGGAAGGAAGTTGATGAGGAGCAAAAATGGTGGTTAGAAGAAAAGGGTATTGAAAATGAAGATGAAGATGCTTTGTTTAAAGGAATTGATAATGAAACTGAGGTGAAAGATAGTGGAAGTGGTGATTTTGGTGACCATATTGGTGTTGGAGCAGATAATGTTGATGAACCTTGGAATTTGAAAGAGGATACTGGTGATGTTTTTGGTTTCAAAGAGGATGATGATGTGAGCAAGGAAGAGGAGATTGGGGAGCTTAATGTTGTCGAGGGTCCGAGTCAAGAGGAGGTTCAGAAGCTTGAGAAGGAAGAGAAAGAGCTCATTGCTGTTCTTGAAGGAACGAAAGCTTTTGGTGACTTGATTGCTGCTTCTGGAATCACCGACGAAATGCTCGAGAGTTTGATTGCGTTGAAAGATCTTAAAGATGTTGATGGGTTGCCACCTCTTAGTGAAATAGAGAAAATGCGCTATGAGAGGAATACTGGCAAATCCACCAGAGGTGAAATGGAGCGTCTAAAGCAAGAGGAAGCGGCGAAAGCTAGAGTGAGACAAGTAGATGATAAGGGACGTGCCTATGGAACCGGAAGGAGAAAATGCAGTATAGCACGTGTGTGGGTTCAGCCTGGTAACGGTAAATTTATGGTTAACGATAAAGAGTTTGACGTCTATTTCCCCATGCTCGATCATCGTGCTACTCTCCTTAGACCTTTCTCTGAGACTAAGACATTGGGGCTCTGGGATGTTAATTGTACCGTGAAAGGTGGTGGTGTTTCAGGGCAAGTTGGAGCTATACGTTTGGGTATTAGCAGGGCTTTGCAAAGTTGGGAACCAGATTTGCGGCCTGCACTTAGAAGTGTCGGCTTCCTGACGAGGGATTCAAGAGTAGTAGAAAGGAAAAAACCTGGAAAGGCCAAAGCAAGAAAAAGTTTTCAATGGGTCAAGCGTTGA
Protein sequence

>Msa0511610

MLSRLIPKKPSYILRFLSLPSKNPNFPNPPINPHFTVFPKPYSSNNNKNKNKDPLSVWKDFGEAEEKFDKLFDEESGNLDGMNEGEGGERVRKEVDEEQKWWLEEKGIENEDEDALFKGIDNETEVKDSGSGDFGDHIGVGADNVDEPWNLKEDTGDVFGFKEDDDVSKEEEIGELNVVEGPSQEEVQKLEKEEKELIAVLEGTKAFGDLIAASGITDEMLESLIALKDLKDVDGLPPLSEIEKMRYERNTGKSTRGEMERLKQEEAAKARVRQVDDKGRAYGTGRRKCSIARVWVQPGNGKFMVNDKEFDVYFPMLDHRATLLRPFSETKTLGLWDVNCTVKGGGVSGQVGAIRLGISRALQSWEPDLRPALRSVGFLTRDSRVVERKKPGKAKARKSFQWVKR*