AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0515350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0515350 MtrunA17_Chr3g0124611 97.409 579 15 0 4 582 9 587 0.0 1162
Msa0515350 MtrunA17_Chr3g0106781 75.045 561 139 1 22 582 18 577 0.0 854
Msa0515350 MtrunA17_Chr6g0487461 52.028 567 259 4 28 582 58 623 0.0 551
Msa0515350 MtrunA17_Chr5g0438351 86.792 106 14 0 11 116 21 126 1.31e-39 141
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0515350 AT4G39640.1 63.903 579 199 5 5 581 1 571 0.0 746
Msa0515350 AT4G39640.2 63.903 579 199 5 5 581 1 571 0.0 746
Msa0515350 AT4G39650.1 63.823 586 198 7 1 581 1 577 0.0 727
Msa0515350 AT4G29210.1 49.298 570 267 6 32 582 71 637 0.0 557
Msa0515350 AT4G29210.2 51.402 428 204 4 32 456 71 497 6.91e-156 457
Msa0515350 AT1G69820.1 71.556 225 63 1 286 509 1 225 2.05e-114 340

Find 171 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTTCCTTCAGGCCTTTC+TGG 0.074565 3_4:-66575230 Msa0515350:CDS
TCCTACACCTTTATTTATTT+TGG 0.084530 3_4:+66573681 None:intergenic
CATCTTAATTCTTTATAATA+TGG 0.189228 3_4:-66576935 Msa0515350:exon
AATCATTTATCAAAGTAAAA+TGG 0.242721 3_4:-66573296 None:intergenic
TGCTGTAACCTGTATATAAT+TGG 0.247789 3_4:-66576992 None:intergenic
TTGAACTTTCTGCTAATATC+AGG 0.251199 3_4:-66573792 Msa0515350:CDS
TGTGGCTGCTGCTCTTTGTT+TGG 0.260299 3_4:-66576710 Msa0515350:CDS
CATGTCCTTCAGAGCCTTGC+TGG 0.265745 3_4:-66573748 Msa0515350:CDS
GCAGGAAAACCACCCTTTCT+TGG 0.267405 3_4:+66573637 None:intergenic
GCGGTGCCTTTATGCTTCTT+AGG 0.281278 3_4:-66576654 Msa0515350:CDS
TCAGTTATATTTACAAAATC+AGG 0.292693 3_4:+66575137 None:intergenic
ATGTGGCTTGATGTGTATTT+TGG 0.296049 3_4:-66573404 Msa0515350:three_prime_UTR
CCTCCTCTTTGTTTCCAGTT+TGG 0.297674 3_4:-66576878 Msa0515350:CDS
TGGCTGCAGTTATGTTATTA+TGG 0.301381 3_4:-66576915 Msa0515350:CDS
TCAAAGCCTCGATTTCTCTA+TGG 0.303562 3_4:+66575195 None:intergenic
ATATCTCACTTAAACTTAAA+TGG 0.306391 3_4:-66573579 Msa0515350:three_prime_UTR
CTTGGTATGCCTCCTCCTTC+AGG 0.309472 3_4:-66575591 Msa0515350:CDS
CTAAGAGCAATTGCAAAGTT+TGG 0.312938 3_4:-66575762 Msa0515350:CDS
GTGGCTGCTGCTCTTTGTTT+GGG 0.314878 3_4:-66576709 Msa0515350:CDS
ACTTATGATTCAAGTCATTA+TGG 0.319436 3_4:-66575047 Msa0515350:CDS
GGACATGGCCCTTACTTCTA+AGG 0.324451 3_4:+66573764 None:intergenic
TCAGGCCTTTCTGGTTCCCT+TGG 0.331021 3_4:-66575221 Msa0515350:CDS
CTTCCCCGGCACGACGAAAT+TGG 0.336481 3_4:+66574710 None:intergenic
GGAGCAGTTACAGAAGAAAA+AGG 0.352470 3_4:+66574454 None:intergenic
GATCGTCGATGCTCGAAGAT+TGG 0.359812 3_4:-66576775 Msa0515350:CDS
TTTCAGTTAGAATGAATCTT+GGG 0.364796 3_4:-66575163 Msa0515350:CDS
GGCCTCTCGGTAGCAGTTCC+AGG 0.369742 3_4:-66576026 Msa0515350:CDS
CAGGCCTTTCTGGTTCCCTT+GGG 0.372651 3_4:-66575220 Msa0515350:CDS
ACTACAGTAAATTCGTATTT+CGG 0.375583 3_4:-66574840 Msa0515350:CDS
CCAAGAAAATCTATAGATAT+AGG 0.377085 3_4:+66575624 None:intergenic
TTTCTTCTGTAACTGCTCCT+AGG 0.377805 3_4:-66574450 Msa0515350:CDS
ATCGTCGATGCTCGAAGATT+GGG 0.379068 3_4:-66576774 Msa0515350:CDS
GAACATTCCAAAATAAATAA+AGG 0.380999 3_4:-66573688 Msa0515350:CDS
CCTGCCAATTTCGTCGTGCC+GGG 0.393581 3_4:-66574714 Msa0515350:CDS
GTTAAAGATGTTCAGAAGGC+TGG 0.400636 3_4:-66575699 Msa0515350:CDS
TCCTGCCAATTTCGTCGTGC+CGG 0.409726 3_4:-66574715 Msa0515350:CDS
ATGTGGTATATTATGAGAAC+TGG 0.410439 3_4:-66573837 Msa0515350:CDS
GCACAATATGAGCTTCCTTC+AGG 0.410702 3_4:-66575239 Msa0515350:CDS
GGCAGAAGCAGATGCCAAAC+TGG 0.410790 3_4:+66576864 None:intergenic
ATGTACTGTGGCTCCACATA+TGG 0.411147 3_4:+66573351 None:intergenic
AGTTCAGCTTCAAGTGGTAT+TGG 0.425763 3_4:-66576679 Msa0515350:CDS
TTCTTCTGTAACTGCTCCTA+GGG 0.425863 3_4:-66574449 Msa0515350:CDS
GCTTTGTATGGTGGAATAGT+TGG 0.425952 3_4:-66575732 Msa0515350:CDS
ATGCTTCTTAGGTTAGCTAA+TGG 0.427061 3_4:-66576643 Msa0515350:CDS
ACCCTTTCTTGGATCACTTA+CGG 0.430481 3_4:+66573648 None:intergenic
CTCGGGACTCCAGATCAATT+AGG 0.436728 3_4:+66573519 None:intergenic
AGCTAACCTAAGAAGCATAA+AGG 0.439391 3_4:+66576648 None:intergenic
TTTCTTGGATTAAAGATCCT+TGG 0.439838 3_4:-66575609 Msa0515350:CDS
ATCAGGAGTCCTAATTGATC+TGG 0.440048 3_4:-66573528 Msa0515350:three_prime_UTR
CAGGGAAAGCCTTAGAAGTA+AGG 0.450851 3_4:-66573773 Msa0515350:CDS
TTTGGTCCACAAGCTTTGTA+TGG 0.452119 3_4:-66575744 Msa0515350:CDS
TTCTCATAATATACCACATT+AGG 0.453122 3_4:+66573841 None:intergenic
GAATCACTTTGTCAAAGGAA+TGG 0.453749 3_4:-66574479 Msa0515350:CDS
AGCAGGCGGTCGAACATCCT+TGG 0.454513 3_4:+66574737 None:intergenic
TTTCAACACTTGAGCAAACT+TGG 0.459644 3_4:+66575091 None:intergenic
TGAAGGCCAGCTAGTTCTCC+TGG 0.462220 3_4:+66576008 None:intergenic
TTGAGTACTATTCCTGTACT+TGG 0.467003 3_4:+66574801 None:intergenic
TGCTCCTAGGGTCTATCATC+AGG 0.468787 3_4:-66574437 Msa0515350:intron
AAAGTACACTGTTAAACAAA+AGG 0.472586 3_4:-66575649 Msa0515350:CDS
ACGACGAAATTGGCAGGAGC+AGG 0.472614 3_4:+66574720 None:intergenic
CAGTTAAGGTCGAATAGATC+AGG 0.479105 3_4:-66573545 Msa0515350:three_prime_UTR
AACACTACTTTGAAGGCAAA+TGG 0.481370 3_4:-66576050 Msa0515350:CDS
TCCTTCAGAGCCTTGCTGGT+GGG 0.483076 3_4:-66573744 Msa0515350:CDS
TAACTTACCAGCATCATTTG+AGG 0.485318 3_4:+66575564 None:intergenic
TGGTGGCAACACTACTTTGA+AGG 0.485618 3_4:-66576057 Msa0515350:CDS
CGAATTTACTGTAGTGGTCA+TGG 0.494343 3_4:+66574848 None:intergenic
AGGGAAGTGAAAGCAGTAGT+AGG 0.496539 3_4:-66574550 Msa0515350:CDS
CAGTGATTCTTGCTAGTAGA+GGG 0.498771 3_4:-66575932 Msa0515350:CDS
GAGAACTGGACAACAGTGAC+CGG 0.499140 3_4:-66573823 Msa0515350:CDS
CGATTTCTCTATGGATCCCA+AGG 0.500870 3_4:+66575204 None:intergenic
TGGTCAATGAGCTTCAGTTA+AGG 0.501076 3_4:-66573559 Msa0515350:three_prime_UTR
AACAACATGGAAAGCTTCCA+TGG 0.507183 3_4:-66575974 Msa0515350:CDS
TCCATCTGCATGTGAAGGTA+TGG 0.508355 3_4:+66575897 None:intergenic
CCCGGCACGACGAAATTGGC+AGG 0.508773 3_4:+66574714 None:intergenic
TTTGATCGCTTTCATTAACT+AGG 0.510500 3_4:-66573496 Msa0515350:three_prime_UTR
TTAAGTTTAAGTGAGATATG+AGG 0.510622 3_4:+66573583 None:intergenic
GAAGTAATCATTGCTCATCA+TGG 0.511179 3_4:-66576814 Msa0515350:CDS
GTACAAGACCAATTATATAC+AGG 0.516352 3_4:+66576984 None:intergenic
TAGCTGGCCTTCACAAGGCA+TGG 0.517657 3_4:-66575998 Msa0515350:CDS
GATGATAATGGTCTCTTCCC+CGG 0.518164 3_4:+66574696 None:intergenic
CTTCGAGCATCGACGATCAT+CGG 0.519186 3_4:+66576780 None:intergenic
TCCCACCAGCAAGGCTCTGA+AGG 0.522177 3_4:+66573743 None:intergenic
GTCACCAACTATTGTTCTCA+AGG 0.525838 3_4:-66574670 Msa0515350:intron
ACATGCAGTGGATGCAGCTG+TGG 0.526599 3_4:-66576728 Msa0515350:CDS
GGCCGTAAGTGATCCAAGAA+AGG 0.530949 3_4:-66573650 Msa0515350:CDS
GTCCTTCAGAGCCTTGCTGG+TGG 0.531940 3_4:-66573745 Msa0515350:CDS
TTTAGTTAAAGATGTTCAGA+AGG 0.532577 3_4:-66575703 Msa0515350:CDS
GTTGGTGACATGGATGATAA+TGG 0.536093 3_4:+66574684 None:intergenic
ATATGTTATAATAAGAAACT+AGG 0.536973 3_4:-66575792 Msa0515350:CDS
GGGATGGATGTTATCCAAGA+AGG 0.538671 3_4:-66576754 Msa0515350:CDS
TGAACTTTCTGCTAATATCA+GGG 0.539929 3_4:-66573791 Msa0515350:CDS
TCAGCTTCAAGTGGTATTGG+TGG 0.540011 3_4:-66576676 Msa0515350:CDS
GCTTCAAGTGGTATTGGTGG+CGG 0.540106 3_4:-66576673 Msa0515350:CDS
TTAATGAAAGCGATCAAACT+CGG 0.540330 3_4:+66573501 None:intergenic
CATATTATAAAGAATTAAGA+TGG 0.547738 3_4:+66576936 None:intergenic
GGTATGCCTCCTCCTTCAGG+TGG 0.549489 3_4:-66575588 Msa0515350:CDS
AGGTGGGCCTCAAATGATGC+TGG 0.553365 3_4:-66575571 Msa0515350:intron
GGCATTACAAGTCTATTCCA+TGG 0.553522 3_4:+66575957 None:intergenic
GATTATTGCTGCAACTTCAG+AGG 0.553592 3_4:-66574509 Msa0515350:CDS
AGAATTGAAATAATTAAATG+TGG 0.555500 3_4:-66573421 Msa0515350:three_prime_UTR
TGCTCCTCTTCATGCTTCCA+AGG 0.556551 3_4:-66576590 Msa0515350:intron
TGAGGCCCACCTGAAGGAGG+AGG 0.557428 3_4:+66575582 None:intergenic
GAAGGCAAATGGTGGCCTCT+CGG 0.562410 3_4:-66576039 Msa0515350:CDS
GGCTGGAGGGATATTGACAT+TGG 0.564181 3_4:-66575682 Msa0515350:CDS
ATCATTTGAGGCCCACCTGA+AGG 0.564377 3_4:+66575576 None:intergenic
AGGGAAAGCCTTAGAAGTAA+GGG 0.565321 3_4:-66573772 Msa0515350:CDS
GCCGTAAGTGATCCAAGAAA+GGG 0.566039 3_4:-66573649 Msa0515350:CDS
ACAATACTTTCACCAAGTAC+AGG 0.566632 3_4:-66574813 Msa0515350:CDS
CAGCAAGGCTCTGAAGGACA+TGG 0.566832 3_4:+66573749 None:intergenic
GCAGTTCCAGGAGAACTAGC+TGG 0.567970 3_4:-66576014 Msa0515350:CDS
GTTGTTCCCATGCCTTGTGA+AGG 0.569302 3_4:+66575991 None:intergenic
GGTCCACAAGCTTTGTATGG+TGG 0.569960 3_4:-66575741 Msa0515350:CDS
AGAACCTTGAGAACAATAGT+TGG 0.571389 3_4:+66574666 None:intergenic
TGGAATCAGATAAATGATCA+TGG 0.571447 3_4:-66574915 Msa0515350:CDS
AATAGTACTCAACAATGAGA+TGG 0.573475 3_4:-66574790 Msa0515350:CDS
AAAGCAGTAGTAGGTGCAAG+TGG 0.574642 3_4:-66574541 Msa0515350:CDS
GGATCCCAAGGGAACCAGAA+AGG 0.575413 3_4:+66575216 None:intergenic
GGATGGATGTTATCCAAGAA+GGG 0.577595 3_4:-66576753 Msa0515350:CDS
TCAGTGATTCTTGCTAGTAG+AGG 0.579772 3_4:-66575933 Msa0515350:CDS
GTATGCCTCCTCCTTCAGGT+GGG 0.584516 3_4:-66575587 Msa0515350:CDS
ACCATACCTTCACATGCAGA+TGG 0.585318 3_4:-66575898 Msa0515350:CDS
CATGGAAAACTCTTGAAAGC+AGG 0.586551 3_4:-66575819 Msa0515350:CDS
TCTTGAAATACAGCTACTAG+TGG 0.586782 3_4:+66573441 None:intergenic
AGAACTGGACAACAGTGACC+GGG 0.586985 3_4:-66573822 Msa0515350:CDS
AGAAAGTTCAAAGTGGTCCC+CGG 0.588081 3_4:+66573804 None:intergenic
AGCAGTTTCTCTCATATCAA+AGG 0.589334 3_4:+66576609 None:intergenic
TACAGCTACTAGTGGGACCA+AGG 0.592143 3_4:+66573449 None:intergenic
TAATGAAAGCGATCAAACTC+GGG 0.593238 3_4:+66573502 None:intergenic
AGCTGGCCTTCACAAGGCAT+GGG 0.593280 3_4:-66575997 Msa0515350:CDS
ACGAAATTGGCAGGAGCAGG+CGG 0.593667 3_4:+66574723 None:intergenic
TCAAATATATCGAATGACAT+TGG 0.595472 3_4:-66575864 Msa0515350:CDS
ATTCCACCATACAAAGCTTG+TGG 0.596836 3_4:+66575738 None:intergenic
GACATATTGTCCCACCAGCA+AGG 0.600088 3_4:+66573734 None:intergenic
CTGCCAATTTCGTCGTGCCG+GGG 0.602376 3_4:-66574713 Msa0515350:CDS
TTCAGTTAGAATGAATCTTG+GGG 0.603643 3_4:-66575162 Msa0515350:CDS
AACAAAGAGGAGGCATGCGA+TGG 0.603767 3_4:+66576888 None:intergenic
AAAGATGTTCAGAAGGCTGG+AGG 0.604111 3_4:-66575696 Msa0515350:CDS
GTTAGCTAATGGTGTAGCAA+AGG 0.604530 3_4:-66576632 Msa0515350:CDS
TCCAAAATAAATAAAGGTGT+AGG 0.605868 3_4:-66573682 Msa0515350:CDS
AGTAGTGTATTTGCACCACA+TGG 0.606382 3_4:-66575837 Msa0515350:CDS
AGGGAACCAGAAAGGCCTGA+AGG 0.606461 3_4:+66575224 None:intergenic
CATACCTGATGATAGACCCT+AGG 0.617223 3_4:+66574433 None:intergenic
GAAATACGAATTTACTGTAG+TGG 0.620251 3_4:+66574842 None:intergenic
TATGATTCAAGTCATTATGG+TGG 0.621095 3_4:-66575044 Msa0515350:CDS
ATTTGAGGCCCACCTGAAGG+AGG 0.625374 3_4:+66575579 None:intergenic
AGAACTAGCTGGCCTTCACA+AGG 0.628697 3_4:-66576003 Msa0515350:CDS
CTACTAGCAAGAATCACTGA+TGG 0.635765 3_4:+66575936 None:intergenic
TAAAGGTGTAGGAAAGCTTG+TGG 0.635981 3_4:-66573671 Msa0515350:CDS
CACAAGGCATGGGAACAACA+TGG 0.636359 3_4:-66575987 Msa0515350:CDS
GTTGTCAGTTCAGCTTCAAG+TGG 0.641203 3_4:-66576685 Msa0515350:CDS
ACAGCTACTAGTGGGACCAA+GGG 0.652254 3_4:+66573450 None:intergenic
CTGAAGGAGGAGGCATACCA+AGG 0.655629 3_4:+66575592 None:intergenic
CTTGAAATACAGCTACTAGT+GGG 0.656621 3_4:+66573442 None:intergenic
AGTACCTTGGAAGCATGAAG+AGG 0.656955 3_4:+66576586 None:intergenic
AAGATGTTCAGAAGGCTGGA+GGG 0.658153 3_4:-66575695 Msa0515350:CDS
ATGCCAAACTGGAAACAAAG+AGG 0.660398 3_4:+66576875 None:intergenic
TGGGATCCATAGAGAAATCG+AGG 0.663794 3_4:-66575201 Msa0515350:CDS
GCAGTAGTAGGTGCAAGTGG+AGG 0.669154 3_4:-66574538 Msa0515350:CDS
TCGATGCTCGAAGATTGGGA+TGG 0.670453 3_4:-66576770 Msa0515350:CDS
ACTACTTTGAAGGCAAATGG+TGG 0.671606 3_4:-66576047 Msa0515350:CDS
GATGGATGTTATCCAAGAAG+GGG 0.675440 3_4:-66576752 Msa0515350:CDS
CCAAACTGGAAACAAAGAGG+AGG 0.676783 3_4:+66576878 None:intergenic
TATGCAGCTGATACCTAATG+TGG 0.679757 3_4:-66573854 Msa0515350:intron
TGAGATATGAGGTGACAATG+TGG 0.681915 3_4:+66573594 None:intergenic
GAGAACAATAGTTGGTGACA+TGG 0.682147 3_4:+66574674 None:intergenic
TATTAGCAGAAAGTTCAAAG+TGG 0.683177 3_4:+66573797 None:intergenic
GTAAGTGATCCAAGAAAGGG+TGG 0.686908 3_4:-66573646 Msa0515350:CDS
CTCCTGGAACTGCTACCGAG+AGG 0.707943 3_4:+66576024 None:intergenic
ATGGATGTTATCCAAGAAGG+GGG 0.708511 3_4:-66576751 Msa0515350:CDS
GATTTCTCTATGGATCCCAA+GGG 0.710706 3_4:+66575205 None:intergenic
GAACTGGACAACAGTGACCG+GGG 0.715377 3_4:-66573821 Msa0515350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTTGTATATAAATAATTT+AGG + chr3_4:66576173-66576192 None:intergenic 10.0%
!!! TATTTTTAAAAAATGATCAA+TGG + chr3_4:66576310-66576329 None:intergenic 10.0%
!! CATATTATAAAGAATTAAGA+TGG + chr3_4:66573350-66573369 None:intergenic 15.0%
!! CATCTTAATTCTTTATAATA+TGG - chr3_4:66573348-66573367 Msa0515350:three_prime_UTR 15.0%
!! ATATGTTATAATAAGAAACT+AGG - chr3_4:66574491-66574510 Msa0515350:CDS 15.0%
!! TTCCTATTTATAAAAATAGA+TGG - chr3_4:66574788-66574807 Msa0515350:CDS 15.0%
!! TCCTATTTATAAAAATAGAT+GGG - chr3_4:66574789-66574808 Msa0515350:CDS 15.0%
!!! TAACTCAATATTTTAAAAAC+TGG + chr3_4:66574927-66574946 None:intergenic 15.0%
!! TTAACTTAGTAAAGTATAAT+TGG - chr3_4:66576197-66576216 Msa0515350:intron 15.0%
!! TAAAAATATGAAGATAAATG+TGG - chr3_4:66576322-66576341 Msa0515350:intron 15.0%
!! AGAATTGAAATAATTAAATG+TGG - chr3_4:66576862-66576881 Msa0515350:CDS 15.0%
!!! TGAATTGTATATTTTCATTG+AGG + chr3_4:66573324-66573343 None:intergenic 20.0%
!! CCACTATTTAATTAAAATCT+TGG + chr3_4:66573763-66573782 None:intergenic 20.0%
!!! CCAAGATTTTAATTAAATAG+TGG - chr3_4:66573760-66573779 Msa0515350:CDS 20.0%
!!! AGATTTTAATTAAATAGTGG+CGG - chr3_4:66573763-66573782 Msa0515350:CDS 20.0%
!! CCTATTTATAAAAATAGATG+GGG - chr3_4:66574790-66574809 Msa0515350:CDS 20.0%
!! CTATTTATAAAAATAGATGG+GGG - chr3_4:66574791-66574810 Msa0515350:CDS 20.0%
!! TCAGTTATATTTACAAAATC+AGG + chr3_4:66575149-66575168 None:intergenic 20.0%
!!! CATATTTTTTGCTTATATTC+TGG - chr3_4:66575896-66575915 Msa0515350:CDS 20.0%
!! ACATGAAAAATAGTTATAAG+TGG - chr3_4:66576065-66576084 Msa0515350:CDS 20.0%
!! CATGAAAAATAGTTATAAGT+GGG - chr3_4:66576066-66576085 Msa0515350:CDS 20.0%
!! GAACATTCCAAAATAAATAA+AGG - chr3_4:66576595-66576614 Msa0515350:CDS 20.0%
!! ATATCTCACTTAAACTTAAA+TGG - chr3_4:66576704-66576723 Msa0515350:CDS 20.0%
!! AAGAAAAATTTAATGTACTG+TGG + chr3_4:66576947-66576966 None:intergenic 20.0%
!! TTCTAGAAATTTATTCTCTG+TGG + chr3_4:66574052-66574071 None:intergenic 25.0%
!! AATGAGAAGAGAAAATTTTG+AGG + chr3_4:66574152-66574171 None:intergenic 25.0%
! GAAAAAATGGATGTATCATA+TGG + chr3_4:66574195-66574214 None:intergenic 25.0%
! TCAAATATATCGAATGACAT+TGG - chr3_4:66574419-66574438 Msa0515350:intron 25.0%
! TTTAGTTAAAGATGTTCAGA+AGG - chr3_4:66574580-66574599 Msa0515350:intron 25.0%
! AAAGTACACTGTTAAACAAA+AGG - chr3_4:66574634-66574653 Msa0515350:intron 25.0%
! CCAAGAAAATCTATAGATAT+AGG + chr3_4:66574662-66574681 None:intergenic 25.0%
!! CCTATATCTATAGATTTTCT+TGG - chr3_4:66574659-66574678 Msa0515350:intron 25.0%
! TCCTTATATAGAAAAGAACA+CGG + chr3_4:66574750-66574769 None:intergenic 25.0%
!!! CCCCATCTATTTTTATAAAT+AGG + chr3_4:66574793-66574812 None:intergenic 25.0%
! TTTCTCTCTGTCAATAAAAA+AGG - chr3_4:66574977-66574996 Msa0515350:intron 25.0%
! TTCTCTCTGTCAATAAAAAA+GGG - chr3_4:66574978-66574997 Msa0515350:intron 25.0%
!! TTTTCAGTTAGAATGAATCT+TGG - chr3_4:66575119-66575138 Msa0515350:CDS 25.0%
! TTTCAGTTAGAATGAATCTT+GGG - chr3_4:66575120-66575139 Msa0515350:CDS 25.0%
! ACTTATGATTCAAGTCATTA+TGG - chr3_4:66575236-66575255 Msa0515350:CDS 25.0%
! ACTGCAATTAATTAAATTGC+TGG + chr3_4:66575321-66575340 None:intergenic 25.0%
! ACTACAGTAAATTCGTATTT+CGG - chr3_4:66575443-66575462 Msa0515350:intron 25.0%
! TCAAAAATTATTCTGCAATG+TGG + chr3_4:66575644-66575663 None:intergenic 25.0%
!! TGTAATATTTGTGTTACTAC+AGG - chr3_4:66575708-66575727 Msa0515350:CDS 25.0%
! CAATAACATCATTAAAACCT+AGG - chr3_4:66575987-66576006 Msa0515350:CDS 25.0%
!!! ATAACATTTTGAGTTTTCCT+AGG + chr3_4:66576007-66576026 None:intergenic 25.0%
! TTCTCATAATATACCACATT+AGG + chr3_4:66576445-66576464 None:intergenic 25.0%
!! TCCAAAATAAATAAAGGTGT+AGG - chr3_4:66576601-66576620 Msa0515350:CDS 25.0%
!!! TCCTACACCTTTATTTATTT+TGG + chr3_4:66576605-66576624 None:intergenic 25.0%
! TTAAGTTTAAGTGAGATATG+AGG + chr3_4:66576703-66576722 None:intergenic 25.0%
GTACAAGACCAATTATATAC+AGG + chr3_4:66573302-66573321 None:intergenic 30.0%
!! TGTTTTTGTGTGTCCATTTT+TGG + chr3_4:66573443-66573462 None:intergenic 30.0%
ATCTTGGAAACTATATGCAA+AGG + chr3_4:66573747-66573766 None:intergenic 30.0%
!! TTTTAATTAAATAGTGGCGG+TGG - chr3_4:66573766-66573785 Msa0515350:CDS 30.0%
ATTTGTTTGGAAAAACCATG+TGG - chr3_4:66573900-66573919 Msa0515350:intron 30.0%
AGTAAGAAAAGTCTAGTAGA+TGG - chr3_4:66573959-66573978 Msa0515350:intron 30.0%
TGGATGATATAATTGACACA+TGG - chr3_4:66573979-66573998 Msa0515350:intron 30.0%
GATATAATTGACACATGGTT+AGG - chr3_4:66573984-66574003 Msa0515350:intron 30.0%
!!! ATGATACATCCATTTTTTCC+AGG - chr3_4:66574196-66574215 Msa0515350:intron 30.0%
CATACATATCCTGGAAAAAA+TGG + chr3_4:66574208-66574227 None:intergenic 30.0%
!!! CATTTTTTCCAGGATATGTA+TGG - chr3_4:66574206-66574225 Msa0515350:intron 30.0%
!! GTTTAACAGTGTACTTTTTG+AGG + chr3_4:66574631-66574650 None:intergenic 30.0%
TTTCTTGGATTAAAGATCCT+TGG - chr3_4:66574674-66574693 Msa0515350:CDS 30.0%
! ACCGTGTTCTTTTCTATATA+AGG - chr3_4:66574746-66574765 Msa0515350:CDS 30.0%
TTCAGTTAGAATGAATCTTG+GGG - chr3_4:66575121-66575140 Msa0515350:CDS 30.0%
TATGATTCAAGTCATTATGG+TGG - chr3_4:66575239-66575258 Msa0515350:CDS 30.0%
TTCATTCATTCCCTCTTTAT+AGG - chr3_4:66575345-66575364 Msa0515350:intron 30.0%
TGGAATCAGATAAATGATCA+TGG - chr3_4:66575368-66575387 Msa0515350:intron 30.0%
GAAATACGAATTTACTGTAG+TGG + chr3_4:66575444-66575463 None:intergenic 30.0%
AATAGTACTCAACAATGAGA+TGG - chr3_4:66575493-66575512 Msa0515350:intron 30.0%
!!! TCCTTGGAAACATTTTTTAC+AGG + chr3_4:66575533-66575552 None:intergenic 30.0%
! CTTTTGAATCACTTTGTCAA+AGG - chr3_4:66575799-66575818 Msa0515350:CDS 30.0%
ATGGAATCTTACATTTGTTC+TGG - chr3_4:66575870-66575889 Msa0515350:CDS 30.0%
ATTCAGAGCTATGTGAAATA+TGG - chr3_4:66575928-66575947 Msa0515350:CDS 30.0%
!! TTATGTGATTGATTGGTTTG+AGG + chr3_4:66576377-66576396 None:intergenic 30.0%
TCATCAGTTATGTGATTGAT+TGG + chr3_4:66576384-66576403 None:intergenic 30.0%
ATGTGGTATATTATGAGAAC+TGG - chr3_4:66576446-66576465 Msa0515350:intron 30.0%
TATTAGCAGAAAGTTCAAAG+TGG + chr3_4:66576489-66576508 None:intergenic 30.0%
TTGAACTTTCTGCTAATATC+AGG - chr3_4:66576491-66576510 Msa0515350:intron 30.0%
TGAACTTTCTGCTAATATCA+GGG - chr3_4:66576492-66576511 Msa0515350:intron 30.0%
TTAATGAAAGCGATCAAACT+CGG + chr3_4:66576785-66576804 None:intergenic 30.0%
TTTGATCGCTTTCATTAACT+AGG - chr3_4:66576787-66576806 Msa0515350:CDS 30.0%
TAAAAAATATGCTACTCCCT+TGG - chr3_4:66576817-66576836 Msa0515350:CDS 30.0%
TGGCTGCAGTTATGTTATTA+TGG - chr3_4:66573368-66573387 Msa0515350:three_prime_UTR 35.0%
GAAGTAATCATTGCTCATCA+TGG - chr3_4:66573469-66573488 Msa0515350:three_prime_UTR 35.0%
! AGCTAACCTAAGAAGCATAA+AGG + chr3_4:66573638-66573657 None:intergenic 35.0%
! ATGCTTCTTAGGTTAGCTAA+TGG - chr3_4:66573640-66573659 Msa0515350:CDS 35.0%
AGCAGTTTCTCTCATATCAA+AGG + chr3_4:66573677-66573696 None:intergenic 35.0%
!! TGCATGATTGAAAAGTACCT+TGG + chr3_4:66573713-66573732 None:intergenic 35.0%
!!! AGTGTTTTGATATGTCAACG+CGG + chr3_4:66573846-66573865 None:intergenic 35.0%
TTTCATTTCTCTACACCACA+TGG + chr3_4:66573918-66573937 None:intergenic 35.0%
TGTGGTGTAGAGAAATGAAA+AGG - chr3_4:66573918-66573937 Msa0515350:intron 35.0%
AATGAAAAGGACACATGTAG+AGG - chr3_4:66573931-66573950 Msa0515350:intron 35.0%
! TTTTTCCAGGATATGTATGG+TGG - chr3_4:66574209-66574228 Msa0515350:intron 35.0%
! AACACTACTTTGAAGGCAAA+TGG - chr3_4:66574233-66574252 Msa0515350:intron 35.0%
!!! TTTTTTCCATCTGCATGTGA+AGG + chr3_4:66574394-66574413 None:intergenic 35.0%
CTAAGAGCAATTGCAAAGTT+TGG - chr3_4:66574521-66574540 Msa0515350:CDS 35.0%
TAACTTACCAGCATCATTTG+AGG + chr3_4:66574722-66574741 None:intergenic 35.0%
AACCCAACTGCAATGTAAAT+GGG - chr3_4:66574841-66574860 Msa0515350:CDS 35.0%
ATCCCATTTACATTGCAGTT+GGG + chr3_4:66574846-66574865 None:intergenic 35.0%
!! TAAAAACTGGTTTGAACTGC+CGG + chr3_4:66574914-66574933 None:intergenic 35.0%
TTTCAACACTTGAGCAAACT+TGG + chr3_4:66575195-66575214 None:intergenic 35.0%
ATTCATTCCCTCTTTATAGG+TGG - chr3_4:66575348-66575367 Msa0515350:intron 35.0%
TCTGATTCCACCTATAAAGA+GGG + chr3_4:66575358-66575377 None:intergenic 35.0%
ATCTGATTCCACCTATAAAG+AGG + chr3_4:66575359-66575378 None:intergenic 35.0%
ACAATACTTTCACCAAGTAC+AGG - chr3_4:66575470-66575489 Msa0515350:intron 35.0%
TTGAGTACTATTCCTGTACT+TGG + chr3_4:66575485-66575504 None:intergenic 35.0%
!!! GGAAACATTTTTTACAGGCA+TGG + chr3_4:66575528-66575547 None:intergenic 35.0%
GCCTGTAAAAAATGTTTCCA+AGG - chr3_4:66575529-66575548 Msa0515350:intron 35.0%
AGAACCTTGAGAACAATAGT+TGG + chr3_4:66575620-66575639 None:intergenic 35.0%
! TATTTGTGTTACTACAGGAC+AGG - chr3_4:66575713-66575732 Msa0515350:CDS 35.0%
! ATTTGTGTTACTACAGGACA+GGG - chr3_4:66575714-66575733 Msa0515350:CDS 35.0%
GAATCACTTTGTCAAAGGAA+TGG - chr3_4:66575804-66575823 Msa0515350:CDS 35.0%
ATCTACTTGTAGTCTCATCT+TGG - chr3_4:66576025-66576044 Msa0515350:CDS 35.0%
TCTATACGTAGGACTAAGTT+AGG + chr3_4:66576131-66576150 None:intergenic 35.0%
GATGACATAACTCTATACGT+AGG + chr3_4:66576142-66576161 None:intergenic 35.0%
TGAGAAATTAACTCACCGTA+TGG - chr3_4:66576401-66576420 Msa0515350:intron 35.0%
TAATGAAAGCGATCAAACTC+GGG + chr3_4:66576784-66576803 None:intergenic 35.0%
CTTGAAATACAGCTACTAGT+GGG + chr3_4:66576844-66576863 None:intergenic 35.0%
TCTTGAAATACAGCTACTAG+TGG + chr3_4:66576845-66576864 None:intergenic 35.0%
! ATGTGGCTTGATGTGTATTT+TGG - chr3_4:66576879-66576898 Msa0515350:CDS 35.0%
AAAAACTCAAGTGCCATATG+TGG - chr3_4:66576919-66576938 Msa0515350:CDS 35.0%
ATGCCAAACTGGAAACAAAG+AGG + chr3_4:66573411-66573430 None:intergenic 40.0%
GGATGGATGTTATCCAAGAA+GGG - chr3_4:66573530-66573549 Msa0515350:three_prime_UTR 40.0%
GATGGATGTTATCCAAGAAG+GGG - chr3_4:66573531-66573550 Msa0515350:three_prime_UTR 40.0%
ATGGATGTTATCCAAGAAGG+GGG - chr3_4:66573532-66573551 Msa0515350:three_prime_UTR 40.0%
AGTTCAGCTTCAAGTGGTAT+TGG - chr3_4:66573604-66573623 Msa0515350:three_prime_UTR 40.0%
GTTAGCTAATGGTGTAGCAA+AGG - chr3_4:66573651-66573670 Msa0515350:CDS 40.0%
! ACTACTTTGAAGGCAAATGG+TGG - chr3_4:66574236-66574255 Msa0515350:intron 40.0%
AACAACATGGAAAGCTTCCA+TGG - chr3_4:66574309-66574328 Msa0515350:intron 40.0%
GGCATTACAAGTCTATTCCA+TGG + chr3_4:66574329-66574348 None:intergenic 40.0%
CTACTAGCAAGAATCACTGA+TGG + chr3_4:66574350-66574369 None:intergenic 40.0%
TCAGTGATTCTTGCTAGTAG+AGG - chr3_4:66574350-66574369 Msa0515350:intron 40.0%
CAGTGATTCTTGCTAGTAGA+GGG - chr3_4:66574351-66574370 Msa0515350:intron 40.0%
AGTAGTGTATTTGCACCACA+TGG - chr3_4:66574446-66574465 Msa0515350:CDS 40.0%
! GCTTTCAAGAGTTTTCCATG+TGG + chr3_4:66574464-66574483 None:intergenic 40.0%
CATGGAAAACTCTTGAAAGC+AGG - chr3_4:66574464-66574483 Msa0515350:CDS 40.0%
! TTTGGTCCACAAGCTTTGTA+TGG - chr3_4:66574539-66574558 Msa0515350:CDS 40.0%
ATTCCACCATACAAAGCTTG+TGG + chr3_4:66574548-66574567 None:intergenic 40.0%
! GCTTTGTATGGTGGAATAGT+TGG - chr3_4:66574551-66574570 Msa0515350:CDS 40.0%
GTTAAAGATGTTCAGAAGGC+TGG - chr3_4:66574584-66574603 Msa0515350:intron 40.0%
TTGAACAACGATTGTACCAC+GGG + chr3_4:66574823-66574842 None:intergenic 40.0%
GTTGAACAACGATTGTACCA+CGG + chr3_4:66574824-66574843 None:intergenic 40.0%
CAACCCAACTGCAATGTAAA+TGG - chr3_4:66574840-66574859 Msa0515350:CDS 40.0%
GATCCCATTTACATTGCAGT+TGG + chr3_4:66574847-66574866 None:intergenic 40.0%
CTGTAACAGAAAGATGAGAG+TGG + chr3_4:66575009-66575028 None:intergenic 40.0%
GATTTCTCTATGGATCCCAA+GGG + chr3_4:66575081-66575100 None:intergenic 40.0%
TCAAAGCCTCGATTTCTCTA+TGG + chr3_4:66575091-66575110 None:intergenic 40.0%
CGAATTTACTGTAGTGGTCA+TGG + chr3_4:66575438-66575457 None:intergenic 40.0%
!! GTTGGTGACATGGATGATAA+TGG + chr3_4:66575602-66575621 None:intergenic 40.0%
!! GAGAACAATAGTTGGTGACA+TGG + chr3_4:66575612-66575631 None:intergenic 40.0%
GTCACCAACTATTGTTCTCA+AGG - chr3_4:66575613-66575632 Msa0515350:CDS 40.0%
GATTATTGCTGCAACTTCAG+AGG - chr3_4:66575774-66575793 Msa0515350:CDS 40.0%
GGAGCAGTTACAGAAGAAAA+AGG + chr3_4:66575832-66575851 None:intergenic 40.0%
TTTCTTCTGTAACTGCTCCT+AGG - chr3_4:66575833-66575852 Msa0515350:CDS 40.0%
TTCTTCTGTAACTGCTCCTA+GGG - chr3_4:66575834-66575853 Msa0515350:CDS 40.0%
CAGCTGCATAATCAACCATA+CGG + chr3_4:66576419-66576438 None:intergenic 40.0%
TATGCAGCTGATACCTAATG+TGG - chr3_4:66576429-66576448 Msa0515350:intron 40.0%
AGGGAAAGCCTTAGAAGTAA+GGG - chr3_4:66576511-66576530 Msa0515350:intron 40.0%
! TAAAGGTGTAGGAAAGCTTG+TGG - chr3_4:66576612-66576631 Msa0515350:CDS 40.0%
ACCCTTTCTTGGATCACTTA+CGG + chr3_4:66576638-66576657 None:intergenic 40.0%
! GAATTTTCTCAAATGCCTGC+AGG + chr3_4:66576667-66576686 None:intergenic 40.0%
TGAGATATGAGGTGACAATG+TGG + chr3_4:66576692-66576711 None:intergenic 40.0%
TGGTCAATGAGCTTCAGTTA+AGG - chr3_4:66576724-66576743 Msa0515350:CDS 40.0%
CAGTTAAGGTCGAATAGATC+AGG - chr3_4:66576738-66576757 Msa0515350:CDS 40.0%
ATCAGGAGTCCTAATTGATC+TGG - chr3_4:66576755-66576774 Msa0515350:CDS 40.0%
CCAAACTGGAAACAAAGAGG+AGG + chr3_4:66573408-66573427 None:intergenic 45.0%
! CCTCCTCTTTGTTTCCAGTT+TGG - chr3_4:66573405-66573424 Msa0515350:three_prime_UTR 45.0%
GCATCTGCTTCTGCCAAAAA+TGG - chr3_4:66573427-66573446 Msa0515350:three_prime_UTR 45.0%
ATCGTCGATGCTCGAAGATT+GGG - chr3_4:66573509-66573528 Msa0515350:three_prime_UTR 45.0%
GGGATGGATGTTATCCAAGA+AGG - chr3_4:66573529-66573548 Msa0515350:three_prime_UTR 45.0%
GTTGTCAGTTCAGCTTCAAG+TGG - chr3_4:66573598-66573617 Msa0515350:three_prime_UTR 45.0%
! TCAGCTTCAAGTGGTATTGG+TGG - chr3_4:66573607-66573626 Msa0515350:three_prime_UTR 45.0%
! AGTACCTTGGAAGCATGAAG+AGG + chr3_4:66573700-66573719 None:intergenic 45.0%
CGCACTTGCAGACATTTGTT+TGG - chr3_4:66573887-66573906 Msa0515350:intron 45.0%
TGTTGCCACCATACATATCC+TGG + chr3_4:66574217-66574236 None:intergenic 45.0%
TGGTGGCAACACTACTTTGA+AGG - chr3_4:66574226-66574245 Msa0515350:intron 45.0%
ACCATACCTTCACATGCAGA+TGG - chr3_4:66574385-66574404 Msa0515350:intron 45.0%
TCCATCTGCATGTGAAGGTA+TGG + chr3_4:66574389-66574408 None:intergenic 45.0%
AAAGATGTTCAGAAGGCTGG+AGG - chr3_4:66574587-66574606 Msa0515350:intron 45.0%
AAGATGTTCAGAAGGCTGGA+GGG - chr3_4:66574588-66574607 Msa0515350:intron 45.0%
GTAAATGGGATCAAACCGAC+CGG - chr3_4:66574855-66574874 Msa0515350:CDS 45.0%
GCACAATATGAGCTTCCTTC+AGG - chr3_4:66575044-66575063 Msa0515350:CDS 45.0%
CGATTTCTCTATGGATCCCA+AGG + chr3_4:66575082-66575101 None:intergenic 45.0%
TGGGATCCATAGAGAAATCG+AGG - chr3_4:66575082-66575101 Msa0515350:CDS 45.0%
!! GATGATAATGGTCTCTTCCC+CGG + chr3_4:66575590-66575609 None:intergenic 45.0%
AGGGAAGTGAAAGCAGTAGT+AGG - chr3_4:66575733-66575752 Msa0515350:CDS 45.0%
AAAGCAGTAGTAGGTGCAAG+TGG - chr3_4:66575742-66575761 Msa0515350:CDS 45.0%
CATACCTGATGATAGACCCT+AGG + chr3_4:66575853-66575872 None:intergenic 45.0%
CTAGGGTCTATCATCAGGTA+TGG - chr3_4:66575851-66575870 Msa0515350:CDS 45.0%
GGATGTACAGCAAGATCACA+AGG - chr3_4:66576343-66576362 Msa0515350:intron 45.0%
AGAAAGTTCAAAGTGGTCCC+CGG + chr3_4:66576482-66576501 None:intergenic 45.0%
CAGGGAAAGCCTTAGAAGTA+AGG - chr3_4:66576510-66576529 Msa0515350:intron 45.0%
GCCGTAAGTGATCCAAGAAA+GGG - chr3_4:66576634-66576653 Msa0515350:CDS 45.0%
GTAAGTGATCCAAGAAAGGG+TGG - chr3_4:66576637-66576656 Msa0515350:CDS 45.0%
ATGTACTGTGGCTCCACATA+TGG + chr3_4:66576935-66576954 None:intergenic 45.0%
! AACAAAGAGGAGGCATGCGA+TGG + chr3_4:66573398-66573417 None:intergenic 50.0%
!! CTTCGAGCATCGACGATCAT+CGG + chr3_4:66573506-66573525 None:intergenic 50.0%
GATCGTCGATGCTCGAAGAT+TGG - chr3_4:66573508-66573527 Msa0515350:three_prime_UTR 50.0%
TCGATGCTCGAAGATTGGGA+TGG - chr3_4:66573513-66573532 Msa0515350:three_prime_UTR 50.0%
TGTGGCTGCTGCTCTTTGTT+TGG - chr3_4:66573573-66573592 Msa0515350:three_prime_UTR 50.0%
! GTGGCTGCTGCTCTTTGTTT+GGG - chr3_4:66573574-66573593 Msa0515350:three_prime_UTR 50.0%
!! GCTTCAAGTGGTATTGGTGG+CGG - chr3_4:66573610-66573629 Msa0515350:exon 50.0%
GCGGTGCCTTTATGCTTCTT+AGG - chr3_4:66573629-66573648 Msa0515350:CDS 50.0%
TGCTCCTCTTCATGCTTCCA+AGG - chr3_4:66573693-66573712 Msa0515350:CDS 50.0%
TTAAATAGTGGCGGTGGACG+AGG - chr3_4:66573772-66573791 Msa0515350:CDS 50.0%
ATCTGATGCAGCCTCAATCG+CGG - chr3_4:66573811-66573830 Msa0515350:CDS 50.0%
ATGTCTGCAAGTGCGCAACT+TGG + chr3_4:66573882-66573901 None:intergenic 50.0%
!! AGAACTAGCTGGCCTTCACA+AGG - chr3_4:66574280-66574299 Msa0515350:intron 50.0%
GTTGTTCCCATGCCTTGTGA+AGG + chr3_4:66574295-66574314 None:intergenic 50.0%
CACAAGGCATGGGAACAACA+TGG - chr3_4:66574296-66574315 Msa0515350:intron 50.0%
! GGTCCACAAGCTTTGTATGG+TGG - chr3_4:66574542-66574561 Msa0515350:CDS 50.0%
GGCTGGAGGGATATTGACAT+TGG - chr3_4:66574601-66574620 Msa0515350:intron 50.0%
! ATCATTTGAGGCCCACCTGA+AGG + chr3_4:66574710-66574729 None:intergenic 50.0%
AGGTTGAACCGGAAACCAGA+CGG + chr3_4:66574885-66574904 None:intergenic 50.0%
TCCGGTTCAACCTGTTGATC+CGG - chr3_4:66574892-66574911 Msa0515350:CDS 50.0%
GTTTGAACTGCCGGATCAAC+AGG + chr3_4:66574905-66574924 None:intergenic 50.0%
TGCTCCTAGGGTCTATCATC+AGG - chr3_4:66575846-66575865 Msa0515350:CDS 50.0%
GAGAACTGGACAACAGTGAC+CGG - chr3_4:66576460-66576479 Msa0515350:intron 50.0%
AGAACTGGACAACAGTGACC+GGG - chr3_4:66576461-66576480 Msa0515350:intron 50.0%
GGACATGGCCCTTACTTCTA+AGG + chr3_4:66576522-66576541 None:intergenic 50.0%
GACATATTGTCCCACCAGCA+AGG + chr3_4:66576552-66576571 None:intergenic 50.0%
GGCCGTAAGTGATCCAAGAA+AGG - chr3_4:66576633-66576652 Msa0515350:CDS 50.0%
GCAGGAAAACCACCCTTTCT+TGG + chr3_4:66576649-66576668 None:intergenic 50.0%
! AGAAAGGGTGGTTTTCCTGC+AGG - chr3_4:66576649-66576668 Msa0515350:CDS 50.0%
CTCGGGACTCCAGATCAATT+AGG + chr3_4:66576767-66576786 None:intergenic 50.0%
ACAGCTACTAGTGGGACCAA+GGG + chr3_4:66576836-66576855 None:intergenic 50.0%
TACAGCTACTAGTGGGACCA+AGG + chr3_4:66576837-66576856 None:intergenic 50.0%
GGCAGAAGCAGATGCCAAAC+TGG + chr3_4:66573422-66573441 None:intergenic 55.0%
ACATGCAGTGGATGCAGCTG+TGG - chr3_4:66573555-66573574 Msa0515350:three_prime_UTR 55.0%
GAAGGCAAATGGTGGCCTCT+CGG - chr3_4:66574244-66574263 Msa0515350:intron 55.0%
GCAGTTCCAGGAGAACTAGC+TGG - chr3_4:66574269-66574288 Msa0515350:intron 55.0%
! TGAAGGCCAGCTAGTTCTCC+TGG + chr3_4:66574278-66574297 None:intergenic 55.0%
!! TAGCTGGCCTTCACAAGGCA+TGG - chr3_4:66574285-66574304 Msa0515350:intron 55.0%
!! AGCTGGCCTTCACAAGGCAT+GGG - chr3_4:66574286-66574305 Msa0515350:intron 55.0%
! CTGAAGGAGGAGGCATACCA+AGG + chr3_4:66574694-66574713 None:intergenic 55.0%
CTTGGTATGCCTCCTCCTTC+AGG - chr3_4:66574692-66574711 Msa0515350:CDS 55.0%
GTATGCCTCCTCCTTCAGGT+GGG - chr3_4:66574696-66574715 Msa0515350:CDS 55.0%
! ATTTGAGGCCCACCTGAAGG+AGG + chr3_4:66574707-66574726 None:intergenic 55.0%
AGGTGGGCCTCAAATGATGC+TGG - chr3_4:66574712-66574731 Msa0515350:CDS 55.0%
AATGGGATCAAACCGACCGG+CGG - chr3_4:66574858-66574877 Msa0515350:CDS 55.0%
! GCCGGATCAACAGGTTGAAC+CGG + chr3_4:66574896-66574915 None:intergenic 55.0%
GAGCTTCCTTCAGGCCTTTC+TGG - chr3_4:66575053-66575072 Msa0515350:CDS 55.0%
AGGGAACCAGAAAGGCCTGA+AGG + chr3_4:66575062-66575081 None:intergenic 55.0%
!! TCAGGCCTTTCTGGTTCCCT+TGG - chr3_4:66575062-66575081 Msa0515350:CDS 55.0%
!! CAGGCCTTTCTGGTTCCCTT+GGG - chr3_4:66575063-66575082 Msa0515350:CDS 55.0%
GGATCCCAAGGGAACCAGAA+AGG + chr3_4:66575070-66575089 None:intergenic 55.0%
ACGAAATTGGCAGGAGCAGG+CGG + chr3_4:66575563-66575582 None:intergenic 55.0%
ACGACGAAATTGGCAGGAGC+AGG + chr3_4:66575566-66575585 None:intergenic 55.0%
TCCTGCCAATTTCGTCGTGC+CGG - chr3_4:66575568-66575587 Msa0515350:intron 55.0%
GCAGTAGTAGGTGCAAGTGG+AGG - chr3_4:66575745-66575764 Msa0515350:CDS 55.0%
GTGGGACAGCTCTCATGACA+TGG - chr3_4:66576084-66576103 Msa0515350:intron 55.0%
GAACTGGACAACAGTGACCG+GGG - chr3_4:66576462-66576481 Msa0515350:intron 55.0%
!! CAGCAAGGCTCTGAAGGACA+TGG + chr3_4:66576537-66576556 None:intergenic 55.0%
CATGTCCTTCAGAGCCTTGC+TGG - chr3_4:66576535-66576554 Msa0515350:intron 55.0%
TCCTTCAGAGCCTTGCTGGT+GGG - chr3_4:66576539-66576558 Msa0515350:intron 55.0%
CCACTGCATGTCCCCCTTCT+TGG + chr3_4:66573546-66573565 None:intergenic 60.0%
CCAAGAAGGGGGACATGCAG+TGG - chr3_4:66573543-66573562 Msa0515350:three_prime_UTR 60.0%
CTCCTGGAACTGCTACCGAG+AGG + chr3_4:66574262-66574281 None:intergenic 60.0%
GGTATGCCTCCTCCTTCAGG+TGG - chr3_4:66574695-66574714 Msa0515350:CDS 60.0%
!! TAGATGGGGGCATTGTCCCG+TGG - chr3_4:66574804-66574823 Msa0515350:CDS 60.0%
AGCAGGCGGTCGAACATCCT+TGG + chr3_4:66575549-66575568 None:intergenic 60.0%
CCTGCCAATTTCGTCGTGCC+GGG - chr3_4:66575569-66575588 Msa0515350:intron 60.0%
CTGCCAATTTCGTCGTGCCG+GGG - chr3_4:66575570-66575589 Msa0515350:intron 60.0%
CTTCCCCGGCACGACGAAAT+TGG + chr3_4:66575576-66575595 None:intergenic 60.0%
GTCCTTCAGAGCCTTGCTGG+TGG - chr3_4:66576538-66576557 Msa0515350:intron 60.0%
! TCCCACCAGCAAGGCTCTGA+AGG + chr3_4:66576543-66576562 None:intergenic 60.0%
GGTCAGCGCAACCGCGATTG+AGG + chr3_4:66573825-66573844 None:intergenic 65.0%
GGCCTCTCGGTAGCAGTTCC+AGG - chr3_4:66574257-66574276 Msa0515350:intron 65.0%
TGAGGCCCACCTGAAGGAGG+AGG + chr3_4:66574704-66574723 None:intergenic 65.0%
AAACCAGACGGTCCGCCGGT+CGG + chr3_4:66574873-66574892 None:intergenic 65.0%
CCCGGCACGACGAAATTGGC+AGG + chr3_4:66575572-66575591 None:intergenic 65.0%
AAACCGACCGGCGGACCGTC+TGG - chr3_4:66574867-66574886 Msa0515350:CDS 70.0%
CCGGAAACCAGACGGTCCGC+CGG + chr3_4:66574877-66574896 None:intergenic 70.0%
! CCGGCGGACCGTCTGGTTTC+CGG - chr3_4:66574874-66574893 Msa0515350:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 66573299 66577006 66573299 ID=Msa0515350;Name=Msa0515350
chr3_4 mRNA 66573299 66577006 66573299 ID=Msa0515350-mRNA-1;Parent=Msa0515350;Name=Msa0515350-mRNA-1;_AED=0.09;_eAED=0.09;_QI=68|1|1|1|1|1|6|328|582
chr3_4 exon 66573299 66573869 66573299 ID=Msa0515350-mRNA-1:exon:17157;Parent=Msa0515350-mRNA-1
chr3_4 exon 66574438 66574575 66574438 ID=Msa0515350-mRNA-1:exon:17156;Parent=Msa0515350-mRNA-1
chr3_4 exon 66574671 66574938 66574671 ID=Msa0515350-mRNA-1:exon:17155;Parent=Msa0515350-mRNA-1
chr3_4 exon 66575041 66575276 66575041 ID=Msa0515350-mRNA-1:exon:17154;Parent=Msa0515350-mRNA-1
chr3_4 exon 66575572 66576087 66575572 ID=Msa0515350-mRNA-1:exon:17153;Parent=Msa0515350-mRNA-1
chr3_4 exon 66576591 66577006 66576591 ID=Msa0515350-mRNA-1:exon:17152;Parent=Msa0515350-mRNA-1
chr3_4 five_prime_UTR 66576939 66577006 66576939 ID=Msa0515350-mRNA-1:five_prime_utr;Parent=Msa0515350-mRNA-1
chr3_4 CDS 66576591 66576938 66576591 ID=Msa0515350-mRNA-1:cds;Parent=Msa0515350-mRNA-1
chr3_4 CDS 66575572 66576087 66575572 ID=Msa0515350-mRNA-1:cds;Parent=Msa0515350-mRNA-1
chr3_4 CDS 66575041 66575276 66575041 ID=Msa0515350-mRNA-1:cds;Parent=Msa0515350-mRNA-1
chr3_4 CDS 66574671 66574938 66574671 ID=Msa0515350-mRNA-1:cds;Parent=Msa0515350-mRNA-1
chr3_4 CDS 66574438 66574575 66574438 ID=Msa0515350-mRNA-1:cds;Parent=Msa0515350-mRNA-1
chr3_4 CDS 66573627 66573869 66573627 ID=Msa0515350-mRNA-1:cds;Parent=Msa0515350-mRNA-1
chr3_4 three_prime_UTR 66573299 66573626 66573299 ID=Msa0515350-mRNA-1:three_prime_utr;Parent=Msa0515350-mRNA-1
Gene Sequence

>Msa0515350

ATGGCTGCAGTTATGTTATTATGGCGTGCCATCGCATGCCTCCTCTTTGTTTCCAGTTTGGCATCTGCTTCTGCCAAAAATGGACACACAAAAACAAGAAATGAAGTAATCATTGCTCATCATGGAGCTGTTGCAACCGATGATCGTCGATGCTCGAAGATTGGGATGGATGTTATCCAAGAAGGGGGACATGCAGTGGATGCAGCTGTGGCTGCTGCTCTTTGTTTGGGAGTTGTCAGTTCAGCTTCAAGTGGTATTGGTGGCGGTGCCTTTATGCTTCTTAGGTTAGCTAATGGTGTAGCAAAGGCCTTTGATATGAGAGAAACTGCTCCTCTTCATGCTTCCAAGGATATGTATGGTGGCAACACTACTTTGAAGGCAAATGGTGGCCTCTCGGTAGCAGTTCCAGGAGAACTAGCTGGCCTTCACAAGGCATGGGAACAACATGGAAAGCTTCCATGGAATAGACTTGTAATGCCATCAGTGATTCTTGCTAGTAGAGGGTTTAAAATATCACCATACCTTCACATGCAGATGGAAAAAACAGAATCAAATATATCGAATGACATTGGTCTTAGTAGTGTATTTGCACCACATGGAAAACTCTTGAAAGCAGGTGAAATATGTTATAATAAGAAACTAGGAGAAACTCTAAGAGCAATTGCAAAGTTTGGTCCACAAGCTTTGTATGGTGGAATAGTTGGCATTAATTTAGTTAAAGATGTTCAGAAGGCTGGAGGGATATTGACATTGGAAGACCTCAAAAAGTACACTGTTAAACAAAAGGAACCTATATCTATAGATTTTCTTGGATTAAAGATCCTTGGTATGCCTCCTCCTTCAGGTGGGCCTCAAATGATGCTGCTGCTGAACATTCTAGCACAATATGAGCTTCCTTCAGGCCTTTCTGGTTCCCTTGGGATCCATAGAGAAATCGAGGCTTTGAAACATGTATTTTCAGTTAGAATGAATCTTGGGGATCCTGATTTTGTAAATATAACTGAAGTTCTTTCTGACATGCTTTCTACCAAGTTTGCTCAAGTGTTGAAAAAAGACATCAATGATAATAAGACTTATGATTCAAGTCATTATGGTGGCAAGTGGAATCAGATAAATGATCATGGTACAAGTCATTTAAGCATAATAGATTTTGAGAGAAATGCTGTTTCCATGACCACTACAGTAAATTCGTATTTCGGTGCAACAATACTTTCACCAAGTACAGGAATAGTACTCAACAATGAGATGGATGATTTTTCCATGCCTGTAAAAAATGTTTCCAAGGATGTTCGACCGCCTGCTCCTGCCAATTTCGTCGTGCCGGGGAAGAGACCATTATCATCCATGTCACCAACTATTGTTCTCAAGGACAGGGAAGTGAAAGCAGTAGTAGGTGCAAGTGGAGGAATTATGATTATTGCTGCAACTTCAGAGGTTCTTTTGAATCACTTTGTCAAAGGAATGGATCCTTTTTCTTCTGTAACTGCTCCTAGGGTCTATCATCAGCTGATACCTAATGTGGTATATTATGAGAACTGGACAACAGTGACCGGGGACCACTTTGAACTTTCTGCTAATATCAGGGAAAGCCTTAGAAGTAAGGGCCATGTCCTTCAGAGCCTTGCTGGTGGGACAATATGTCAATTTATCGTTTCAGACACTTCTGAACATTCCAAAATAAATAAAGGTGTAGGAAAGCTTGTGGCCGTAAGTGATCCAAGAAAGGGTGGTTTTCCTGCAGGCATTTGA
Protein sequence

>Msa0515350

MAAVMLLWRAIACLLFVSSLASASAKNGHTKTRNEVIIAHHGAVATDDRRCSKIGMDVIQEGGHAVDAAVAAALCLGVVSSASSGIGGGAFMLLRLANGVAKAFDMRETAPLHASKDMYGGNTTLKANGGLSVAVPGELAGLHKAWEQHGKLPWNRLVMPSVILASRGFKISPYLHMQMEKTESNISNDIGLSSVFAPHGKLLKAGEICYNKKLGETLRAIAKFGPQALYGGIVGINLVKDVQKAGGILTLEDLKKYTVKQKEPISIDFLGLKILGMPPPSGGPQMMLLLNILAQYELPSGLSGSLGIHREIEALKHVFSVRMNLGDPDFVNITEVLSDMLSTKFAQVLKKDINDNKTYDSSHYGGKWNQINDHGTSHLSIIDFERNAVSMTTTVNSYFGATILSPSTGIVLNNEMDDFSMPVKNVSKDVRPPAPANFVVPGKRPLSSMSPTIVLKDREVKAVVGASGGIMIIAATSEVLLNHFVKGMDPFSSVTAPRVYHQLIPNVVYYENWTTVTGDHFELSANIRESLRSKGHVLQSLAGGTICQFIVSDTSEHSKINKGVGKLVAVSDPRKGGFPAGI*