Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517830 | XP_003602545.2 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 783 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517830 | sp|P53492|ACT7_ARATH | 98.408 | 377 | 6 | 0 | 1 | 377 | 1 | 377 | 0.0 | 774 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517830 | H6W451 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 783 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0125640 | Msa0517830 | 0.814913 | 1.209384e-51 | -8.615850e-47 |
| Msa0170110 | Msa0517830 | 0.804858 | 1.764960e-49 | -8.615850e-47 |
| Msa0473730 | Msa0517830 | 0.920105 | 1.948667e-87 | -8.615850e-47 |
| Msa0517760 | Msa0517830 | 0.986656 | 1.598910e-167 | -8.615850e-47 |
| Msa0517830 | Msa0741740 | -0.802173 | 6.361693e-49 | -8.615850e-47 |
| Msa0517830 | Msa0984220 | 0.918916 | 8.622680e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517830 | MtrunA17_Chr3g0129641 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 783 |
| Msa0517830 | MtrunA17_Chr1g0175391 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0517830 | MtrunA17_Chr7g0223901 | 96.021 | 377 | 15 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa0517830 | MtrunA17_Chr7g0258721 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa0517830 | MtrunA17_Chr2g0328091 | 94.960 | 377 | 19 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa0517830 | MtrunA17_Chr6g0448881 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa0517830 | MtrunA17_Chr2g0278591 | 94.695 | 377 | 20 | 0 | 1 | 377 | 1 | 377 | 0.0 | 754 |
| Msa0517830 | MtrunA17_Chr7g0224401 | 43.799 | 379 | 199 | 3 | 10 | 374 | 7 | 385 | 3.02e-121 | 355 |
| Msa0517830 | MtrunA17_Chr8g0361001 | 37.220 | 446 | 207 | 11 | 1 | 376 | 1 | 443 | 1.69e-91 | 281 |
| Msa0517830 | MtrunA17_Chr5g0427591 | 37.220 | 446 | 207 | 11 | 1 | 376 | 1 | 443 | 1.87e-91 | 281 |
| Msa0517830 | MtrunA17_Chr8g0381261 | 34.474 | 409 | 222 | 8 | 10 | 372 | 10 | 418 | 3.32e-72 | 231 |
| Msa0517830 | MtrunA17_Chr3g0089031 | 37.105 | 380 | 213 | 9 | 7 | 377 | 1 | 363 | 1.60e-68 | 220 |
| Msa0517830 | MtrunA17_Chr2g0305361 | 27.880 | 434 | 247 | 7 | 8 | 377 | 6 | 437 | 4.80e-57 | 192 |
| Msa0517830 | MtrunA17_Chr3g0080021 | 30.976 | 297 | 181 | 9 | 91 | 371 | 179 | 467 | 9.82e-40 | 147 |
| Msa0517830 | MtrunA17_Chr8g0369101 | 32.082 | 293 | 172 | 10 | 91 | 366 | 187 | 469 | 3.03e-37 | 140 |
| Msa0517830 | MtrunA17_Chr3g0111971 | 30.556 | 252 | 156 | 7 | 9 | 245 | 21 | 268 | 6.19e-24 | 103 |
| Msa0517830 | MtrunA17_Chr3g0111971 | 34.426 | 122 | 77 | 2 | 250 | 368 | 586 | 707 | 4.81e-16 | 79.7 |
| Msa0517830 | MtrunA17_Chr8g0336071 | 40.000 | 95 | 57 | 0 | 105 | 199 | 1 | 95 | 3.35e-19 | 82.0 |
| Msa0517830 | MtrunA17_Chr8g0336061 | 39.130 | 92 | 43 | 1 | 241 | 319 | 12 | 103 | 3.60e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517830 | AT5G09810.1 | 98.408 | 377 | 6 | 0 | 1 | 377 | 1 | 377 | 0.0 | 774 |
| Msa0517830 | AT3G53750.1 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 760 |
| Msa0517830 | AT3G53750.2 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 760 |
| Msa0517830 | AT2G37620.1 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 760 |
| Msa0517830 | AT2G37620.3 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 760 |
| Msa0517830 | AT2G37620.2 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 760 |
| Msa0517830 | AT2G37620.4 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 760 |
| Msa0517830 | AT3G12110.1 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 760 |
| Msa0517830 | AT3G46520.2 | 94.430 | 377 | 21 | 0 | 1 | 377 | 1 | 377 | 0.0 | 749 |
| Msa0517830 | AT3G46520.1 | 94.430 | 377 | 21 | 0 | 1 | 377 | 1 | 377 | 0.0 | 749 |
| Msa0517830 | AT1G49240.1 | 93.369 | 377 | 25 | 0 | 1 | 377 | 1 | 377 | 0.0 | 749 |
| Msa0517830 | AT5G59370.2 | 94.164 | 377 | 22 | 0 | 1 | 377 | 1 | 377 | 0.0 | 748 |
| Msa0517830 | AT5G59370.1 | 94.164 | 377 | 22 | 0 | 1 | 377 | 1 | 377 | 0.0 | 748 |
| Msa0517830 | AT3G18780.2 | 93.103 | 377 | 26 | 0 | 1 | 377 | 1 | 377 | 0.0 | 747 |
| Msa0517830 | AT3G18780.3 | 93.103 | 377 | 26 | 0 | 1 | 377 | 1 | 377 | 0.0 | 747 |
| Msa0517830 | AT3G18780.1 | 92.521 | 361 | 27 | 0 | 1 | 361 | 1 | 361 | 0.0 | 707 |
| Msa0517830 | AT2G42100.1 | 84.511 | 368 | 57 | 0 | 10 | 377 | 11 | 378 | 0.0 | 674 |
| Msa0517830 | AT2G42090.1 | 71.622 | 370 | 100 | 1 | 7 | 376 | 1 | 365 | 0.0 | 569 |
| Msa0517830 | AT2G42170.1 | 78.313 | 332 | 69 | 1 | 46 | 377 | 1 | 329 | 0.0 | 560 |
| Msa0517830 | AT2G42170.3 | 78.313 | 332 | 69 | 1 | 46 | 377 | 1 | 329 | 0.0 | 560 |
| Msa0517830 | AT2G42170.4 | 78.526 | 312 | 64 | 1 | 46 | 357 | 1 | 309 | 0.0 | 523 |
| Msa0517830 | AT2G42170.2 | 78.526 | 312 | 64 | 1 | 46 | 357 | 1 | 309 | 0.0 | 523 |
| Msa0517830 | AT2G42170.5 | 78.319 | 226 | 46 | 1 | 152 | 377 | 9 | 231 | 2.52e-131 | 375 |
| Msa0517830 | AT3G27000.1 | 44.591 | 379 | 196 | 4 | 10 | 374 | 7 | 385 | 1.16e-122 | 360 |
| Msa0517830 | AT1G18450.1 | 38.202 | 445 | 201 | 11 | 1 | 376 | 1 | 440 | 8.92e-95 | 290 |
| Msa0517830 | AT1G13180.1 | 34.867 | 413 | 215 | 10 | 10 | 372 | 9 | 417 | 1.60e-72 | 233 |
| Msa0517830 | AT3G60830.1 | 37.467 | 379 | 213 | 9 | 7 | 377 | 1 | 363 | 1.72e-66 | 215 |
| Msa0517830 | AT3G33520.1 | 30.404 | 421 | 235 | 7 | 10 | 377 | 5 | 420 | 3.72e-59 | 197 |
| Msa0517830 | AT5G56180.3 | 30.928 | 291 | 175 | 9 | 91 | 364 | 50 | 331 | 2.05e-35 | 132 |
| Msa0517830 | AT5G56180.1 | 30.928 | 291 | 175 | 9 | 91 | 364 | 182 | 463 | 1.20e-34 | 133 |
| Msa0517830 | AT3G12380.2 | 29.572 | 257 | 158 | 6 | 9 | 245 | 21 | 274 | 3.56e-26 | 110 |
| Msa0517830 | AT3G12380.2 | 34.426 | 122 | 77 | 1 | 250 | 368 | 595 | 716 | 6.11e-16 | 80.1 |
| Msa0517830 | AT3G12380.1 | 29.412 | 255 | 155 | 6 | 9 | 245 | 21 | 268 | 1.80e-25 | 108 |
| Msa0517830 | AT3G12380.1 | 34.426 | 122 | 77 | 1 | 250 | 368 | 589 | 710 | 5.87e-16 | 80.1 |
| Msa0517830 | AT1G73910.1 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.72e-23 | 95.1 |
| Msa0517830 | AT1G73910.2 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.72e-23 | 95.1 |
| Msa0517830 | AT5G56180.2 | 31.683 | 202 | 115 | 7 | 91 | 281 | 182 | 371 | 4.67e-19 | 88.2 |
| Msa0517830 | AT1G73910.3 | 29.268 | 123 | 71 | 2 | 1 | 107 | 1 | 123 | 2.87e-12 | 65.1 |
Find 182 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATTGAATTTGGAAATT+TGG | 0.077352 | 3_4:-69553425 | None:intergenic |
| GGCAACCAGGCAACCCTTTC+CGG | 0.138198 | 3_4:-69556505 | None:intergenic |
| GTTAATTTGAAAATTGAATT+TGG | 0.146908 | 3_4:-69553433 | None:intergenic |
| TATCTTCCATTTCAAAATTT+TGG | 0.151507 | 3_4:+69553395 | Msa0517830:five_prime_UTR |
| TCAAATGTAAAATCTGAAAA+AGG | 0.170768 | 3_4:-69556243 | None:intergenic |
| TAGAGAGAGGAGAGAGAAAT+AGG | 0.191896 | 3_4:-69553371 | None:intergenic |
| GGGAGAGGGGTATTTATATT+AGG | 0.194944 | 3_4:-69553523 | None:intergenic |
| TGAAAGTCTCAAACATGATT+TGG | 0.224034 | 3_4:-69555068 | None:intergenic |
| AAAATTGAATTTGGAAATTT+GGG | 0.231590 | 3_4:-69553424 | None:intergenic |
| TTACCATTATCGCATCATTT+TGG | 0.235445 | 3_4:-69556020 | None:intergenic |
| AGAGAGAAGAGGATTGAAAA+TGG | 0.253575 | 3_4:-69553544 | None:intergenic |
| AGAAGCACTGGGTGCTCTTC+AGG | 0.266274 | 3_4:-69555000 | None:intergenic |
| GGAGAGAGTGGCGTGGGTTT+AGG | 0.273229 | 3_4:-69553500 | None:intergenic |
| CCGTGAGAGTAGAGAGAAAA+TGG | 0.276319 | 3_4:-69553641 | None:intergenic |
| GAGAGTAAGAATACCTCTTT+TGG | 0.276320 | 3_4:-69554887 | None:intergenic |
| GGAGAGGGGTATTTATATTA+GGG | 0.299095 | 3_4:-69553522 | None:intergenic |
| GATGGTTGGAAAAGGACTTC+TGG | 0.306272 | 3_4:-69555562 | None:intergenic |
| AGCACGGTATTGTCAGTAAC+TGG | 0.314467 | 3_4:+69554923 | Msa0517830:CDS |
| ACAGGTATTGTGTTGGATTC+CGG | 0.317257 | 3_4:+69555235 | Msa0517830:intron |
| TGTTTGAAGTCTCTCTTTCT+CGG | 0.325778 | 3_4:-69553588 | None:intergenic |
| CTGACAATACCGTGCTCAAT+GGG | 0.336851 | 3_4:-69554916 | None:intergenic |
| ATCCTTCGTTTGGATCTTGC+TGG | 0.344358 | 3_4:+69555313 | Msa0517830:CDS |
| TCCTAGCAGCATGAAGATTA+AGG | 0.346598 | 3_4:+69555753 | Msa0517830:CDS |
| GGTGGTTCAACTATGTTTCC+TGG | 0.355516 | 3_4:+69555691 | Msa0517830:CDS |
| TGTGTGCAGGCTGGATTTGC+TGG | 0.360977 | 3_4:+69554754 | Msa0517830:intron |
| GAAAGTCTCAAACATGATTT+GGG | 0.367813 | 3_4:-69555067 | None:intergenic |
| AGTCCAAAATGATGCGATAA+TGG | 0.369879 | 3_4:+69556017 | Msa0517830:exon |
| GCTTCCATTCCGATCATTGA+TGG | 0.371444 | 3_4:-69555580 | None:intergenic |
| CTATTGGCCTTTGGGTTAAG+TGG | 0.372320 | 3_4:-69555033 | None:intergenic |
| TTGGTGTCTCTGTCATGTTA+TGG | 0.375712 | 3_4:+69556067 | Msa0517830:three_prime_UTR |
| GCAACCAGGCAACCCTTTCC+GGG | 0.377683 | 3_4:-69556504 | None:intergenic |
| TACTGGTGTCATGGTTGGTA+TGG | 0.381549 | 3_4:+69554828 | Msa0517830:CDS |
| CCCACATGCTATCCTTCGTT+TGG | 0.383523 | 3_4:+69555303 | Msa0517830:CDS |
| CAAAATTAAAATTTGAGATC+GGG | 0.390966 | 3_4:-69556526 | None:intergenic |
| GATGAGTGACCGTAATAAAA+TGG | 0.398429 | 3_4:-69553455 | None:intergenic |
| TGAATTTGGAAATTTGGGTT+AGG | 0.404652 | 3_4:-69553419 | None:intergenic |
| CGAGGTCGGCCAACAATACT+TGG | 0.411313 | 3_4:-69554802 | None:intergenic |
| TCTGTAGATCCACGTAAATC+AGG | 0.413472 | 3_4:-69556475 | None:intergenic |
| TACGGCAACATTGTTCTTAG+TGG | 0.417976 | 3_4:+69555670 | Msa0517830:CDS |
| ATGGTTGGAAAAGGACTTCT+GGG | 0.420047 | 3_4:-69555561 | None:intergenic |
| AGAGAGAGGAGAGAGAAATA+GGG | 0.420412 | 3_4:-69553370 | None:intergenic |
| CGTGGGTTTAGGTGTGGTTG+TGG | 0.430142 | 3_4:-69553489 | None:intergenic |
| GGAAATTGTCCGTGACATAA+AGG | 0.432407 | 3_4:+69555408 | Msa0517830:CDS |
| GAGAGAAGAGGATTGAAAAT+GGG | 0.432634 | 3_4:-69553543 | None:intergenic |
| TATGCAAGTGGTCGTACAAC+TGG | 0.432992 | 3_4:+69555135 | Msa0517830:CDS |
| GTTGGCCGACCTCGTCATAC+TGG | 0.436618 | 3_4:+69554811 | Msa0517830:CDS |
| CTTGTTTGTGACAATGGAAC+TGG | 0.436831 | 3_4:+69554638 | Msa0517830:CDS |
| TCTTCATGCTGCTAGGAGCC+AGG | 0.437433 | 3_4:-69555747 | None:intergenic |
| CAACCCCTTGTTTGTGACAA+TGG | 0.439095 | 3_4:+69554632 | Msa0517830:CDS |
| TTCTCTCAGTACTTTCCAGC+AGG | 0.448158 | 3_4:+69555831 | Msa0517830:CDS |
| GGAGCCTCAGTTAGAAGCAC+TGG | 0.448567 | 3_4:-69555012 | None:intergenic |
| TTGCTGGTGATGATGCTCCT+AGG | 0.448710 | 3_4:+69554770 | Msa0517830:CDS |
| GCTGTGTTTCCAAGTATTGT+TGG | 0.449099 | 3_4:+69554793 | Msa0517830:CDS |
| CGCCATGTATGTGGCCATCC+AGG | 0.449438 | 3_4:+69555098 | Msa0517830:CDS |
| GTGGGTTTAGGTGTGGTTGT+GGG | 0.450335 | 3_4:-69553488 | None:intergenic |
| ACACTTCATGATAGAGTTGT+AGG | 0.451087 | 3_4:-69555623 | None:intergenic |
| CAGAGAGAAAGTACAGTGTC+TGG | 0.452136 | 3_4:+69555788 | Msa0517830:CDS |
| GATGGACAAGTTATCACAAT+TGG | 0.452391 | 3_4:+69555520 | Msa0517830:CDS |
| ATTGTGATAACTTGTCCATC+AGG | 0.464957 | 3_4:-69555517 | None:intergenic |
| AACTGTTGTTTAGCAAAAGA+TGG | 0.467108 | 3_4:+69554592 | Msa0517830:intron |
| CATTTCCTGTGGACAATGGA+TGG | 0.469196 | 3_4:-69555988 | None:intergenic |
| CGATCATTGATGGTTGGAAA+AGG | 0.470418 | 3_4:-69555570 | None:intergenic |
| CCAAAATTAAAATTTGAGAT+CGG | 0.476263 | 3_4:-69556527 | None:intergenic |
| TACAGAATTATTCCCGGAAA+GGG | 0.476794 | 3_4:+69556492 | Msa0517830:three_prime_UTR |
| GGGATGACATGGAGAAGATC+TGG | 0.479434 | 3_4:+69554944 | Msa0517830:CDS |
| TAGGTTGGTTGCCTGTAGTA+AGG | 0.480909 | 3_4:+69556180 | Msa0517830:three_prime_UTR |
| GAAGCTTGCATATGTTGCCT+TGG | 0.482032 | 3_4:+69555432 | Msa0517830:CDS |
| AGAAAGTACAGTGTCTGGAT+TGG | 0.483200 | 3_4:+69555793 | Msa0517830:CDS |
| TATTCCCGGAAAGGGTTGCC+TGG | 0.483405 | 3_4:+69556500 | Msa0517830:three_prime_UTR |
| AGCCTGGATGGCCACATACA+TGG | 0.486225 | 3_4:-69555100 | None:intergenic |
| CAGACACTGTACTTTCTCTC+TGG | 0.490948 | 3_4:-69555787 | None:intergenic |
| TGGATCTACAGAATTATTCC+CGG | 0.491747 | 3_4:+69556486 | Msa0517830:three_prime_UTR |
| TCACACTGTGCCAATCTATG+AGG | 0.492803 | 3_4:+69555270 | Msa0517830:CDS |
| ACTGACAATACCGTGCTCAA+TGG | 0.496612 | 3_4:-69554917 | None:intergenic |
| AAGTACAGTGTCTGGATTGG+AGG | 0.497575 | 3_4:+69555796 | Msa0517830:CDS |
| ATGAAGATCCTCACTGAGAG+AGG | 0.498979 | 3_4:+69555358 | Msa0517830:CDS |
| AAGGGTGAATATGACGAGTC+TGG | 0.499493 | 3_4:+69555964 | Msa0517830:CDS |
| CAGCATGAAGATTAAGGTTG+TGG | 0.500086 | 3_4:+69555759 | Msa0517830:CDS |
| CATAAACATGACGTTCCAAA+AGG | 0.501322 | 3_4:-69556280 | None:intergenic |
| GTTCACCACCTCAGCTGAGC+GGG | 0.502382 | 3_4:+69555387 | Msa0517830:CDS |
| AGTGCATAACCCTCATAGAT+TGG | 0.503175 | 3_4:-69555280 | None:intergenic |
| CCATTCCGATCATTGATGGT+TGG | 0.507915 | 3_4:-69555576 | None:intergenic |
| CTCATACGGTCAGCAATACC+AGG | 0.512812 | 3_4:-69555709 | None:intergenic |
| AAGAGGATTGAAAATGGGAG+AGG | 0.513489 | 3_4:-69553538 | None:intergenic |
| TGCTGGTGATGATGCTCCTA+GGG | 0.516201 | 3_4:+69554771 | Msa0517830:CDS |
| CATAGAGGGAGAGGACAGCC+TGG | 0.522013 | 3_4:-69555116 | None:intergenic |
| TTGGGCTTCGTCACCAACAT+AGG | 0.522846 | 3_4:-69554863 | None:intergenic |
| AGAGGATTGAAAATGGGAGA+GGG | 0.523813 | 3_4:-69553537 | None:intergenic |
| CAGTTCCATTGTCACAAACA+AGG | 0.524372 | 3_4:-69554637 | None:intergenic |
| GGCAACATTGTTCTTAGTGG+TGG | 0.526272 | 3_4:+69555673 | Msa0517830:CDS |
| GAGCAAGGAGATCACTGCCC+TGG | 0.526620 | 3_4:+69555729 | Msa0517830:CDS |
| TAGAGTGCTTCTATGCATCA+TGG | 0.529103 | 3_4:+69556400 | Msa0517830:three_prime_UTR |
| ACCAACCTACAGACATCCAG+TGG | 0.530029 | 3_4:-69556166 | None:intergenic |
| CAGTGATCTCCTTGCTCATA+CGG | 0.530919 | 3_4:-69555723 | None:intergenic |
| CCAACCATCAATGATCGGAA+TGG | 0.531135 | 3_4:+69555576 | Msa0517830:CDS |
| CATGGTTGGTATGGGTCAAA+AGG | 0.532081 | 3_4:+69554837 | Msa0517830:CDS |
| GAGGATTGAAAATGGGAGAG+GGG | 0.534813 | 3_4:-69553536 | None:intergenic |
| ATTGTGTTGGATTCCGGCGA+TGG | 0.537139 | 3_4:+69555241 | Msa0517830:CDS |
| TTAATTGATATATTTGACTC+GGG | 0.539777 | 3_4:+69556593 | Msa0517830:three_prime_UTR |
| ACTGGTGTCATGGTTGGTAT+GGG | 0.539815 | 3_4:+69554829 | Msa0517830:CDS |
| ACCTCGTCATACTGGTGTCA+TGG | 0.540702 | 3_4:+69554819 | Msa0517830:CDS |
| GACAATTTCCCGCTCAGCTG+AGG | 0.541645 | 3_4:-69555395 | None:intergenic |
| CCCACTGGATGTCTGTAGGT+TGG | 0.541714 | 3_4:+69556165 | Msa0517830:three_prime_UTR |
| AATGTTCTGTGGCAGCCCAC+TGG | 0.541871 | 3_4:+69556150 | Msa0517830:three_prime_UTR |
| ACACTGTACTTTCTCTCTGG+TGG | 0.545670 | 3_4:-69555784 | None:intergenic |
| ATGATCGGAATGGAAGCTGC+TGG | 0.546973 | 3_4:+69555586 | Msa0517830:CDS |
| ATTTATATTAGGGGAGAGAG+TGG | 0.553278 | 3_4:-69553512 | None:intergenic |
| GGTGAGAAATGAGAGAGAAG+AGG | 0.555613 | 3_4:-69553555 | None:intergenic |
| ACTATGTTGACATGGATAAG+AGG | 0.557588 | 3_4:+69556091 | Msa0517830:three_prime_UTR |
| TTTAATTGATATATTTGACT+CGG | 0.559293 | 3_4:+69556592 | Msa0517830:three_prime_UTR |
| TCACAATCACTCCTTACTAC+AGG | 0.560040 | 3_4:-69556191 | None:intergenic |
| CTACAGAATTATTCCCGGAA+AGG | 0.561185 | 3_4:+69556491 | Msa0517830:three_prime_UTR |
| TGTACGACCACTTGCATAGA+GGG | 0.561313 | 3_4:-69555130 | None:intergenic |
| AGTTCCATTGTCACAAACAA+GGG | 0.561709 | 3_4:-69554636 | None:intergenic |
| TGTCAGTAACTGGGATGACA+TGG | 0.562581 | 3_4:+69554933 | Msa0517830:CDS |
| GAGGGAGAGGACAGCCTGGA+TGG | 0.565012 | 3_4:-69555112 | None:intergenic |
| CTCTTTCTCGGCGAGAAGTG+TGG | 0.566173 | 3_4:-69553576 | None:intergenic |
| TTTACTACGCCTGATTTACG+TGG | 0.568583 | 3_4:+69556466 | Msa0517830:three_prime_UTR |
| TTGTACGACCACTTGCATAG+AGG | 0.570654 | 3_4:-69555131 | None:intergenic |
| AGACTCGTCATATTCACCCT+TGG | 0.570952 | 3_4:-69555962 | None:intergenic |
| AATTTCCCGCTCAGCTGAGG+TGG | 0.571031 | 3_4:-69555392 | None:intergenic |
| AAGTTCTTGTTCATAATCCA+AGG | 0.571032 | 3_4:-69555449 | None:intergenic |
| ATACTTGGAAACACAGCCCT+AGG | 0.573620 | 3_4:-69554787 | None:intergenic |
| CGTCATACTGGTGTCATGGT+TGG | 0.573856 | 3_4:+69554823 | Msa0517830:CDS |
| ACATGGATAAGAGGTGAGAT+CGG | 0.577014 | 3_4:+69556100 | Msa0517830:three_prime_UTR |
| CTTCATGCTGCTAGGAGCCA+GGG | 0.577950 | 3_4:-69555746 | None:intergenic |
| GAAGCATTTCCTGTGGACAA+TGG | 0.580709 | 3_4:-69555992 | None:intergenic |
| ATTAGGGGAGAGAGTGGCGT+GGG | 0.583614 | 3_4:-69553506 | None:intergenic |
| CAAGCTTCTCCTTTATGTCA+CGG | 0.584330 | 3_4:-69555417 | None:intergenic |
| GACCACTTGCATAGAGGGAG+AGG | 0.585397 | 3_4:-69555125 | None:intergenic |
| CTGGCCCATCCATTGTCCAC+AGG | 0.585546 | 3_4:+69555983 | Msa0517830:CDS |
| GCAAAAGATGGCAGATGCTG+AGG | 0.585999 | 3_4:+69554604 | Msa0517830:intron |
| CAATGTGCCCGCCATGTATG+TGG | 0.588880 | 3_4:+69555089 | Msa0517830:CDS |
| GGATAAGAGGTGAGATCGGA+GGG | 0.589179 | 3_4:+69556104 | Msa0517830:three_prime_UTR |
| TGGATGGCCACATACATGGC+GGG | 0.589918 | 3_4:-69555096 | None:intergenic |
| GACGAAGCCCAATCCAAAAG+AGG | 0.590961 | 3_4:+69554874 | Msa0517830:CDS |
| GTCCTCTCCCTCTATGCAAG+TGG | 0.594901 | 3_4:+69555123 | Msa0517830:CDS |
| GAGTGGCGTGGGTTTAGGTG+TGG | 0.596842 | 3_4:-69553495 | None:intergenic |
| AAATGGAAGATACTAGAGAG+AGG | 0.598442 | 3_4:-69553384 | None:intergenic |
| ATTTCCTGTGGACAATGGAT+GGG | 0.598758 | 3_4:-69555987 | None:intergenic |
| ACCTTAATCTTCATGCTGCT+AGG | 0.600175 | 3_4:-69555754 | None:intergenic |
| GCAGCCCACTGGATGTCTGT+AGG | 0.600795 | 3_4:+69556161 | Msa0517830:three_prime_UTR |
| AGAGAGAAAATGGATCGAAG+AGG | 0.601160 | 3_4:-69553631 | None:intergenic |
| TTGATTTATCAAATGTTCTG+TGG | 0.602809 | 3_4:+69556139 | Msa0517830:three_prime_UTR |
| TTTGCAGATGTGGATATCCA+AGG | 0.604467 | 3_4:+69555945 | Msa0517830:intron |
| AAATTTGAGATCGGGCAACC+AGG | 0.607557 | 3_4:-69556518 | None:intergenic |
| CTCAAGTACCCCATTGAGCA+CGG | 0.608960 | 3_4:+69554907 | Msa0517830:CDS |
| CACACTGTGCCAATCTATGA+GGG | 0.612158 | 3_4:+69555271 | Msa0517830:CDS |
| GATATCAGAAAGGATCTGTA+CGG | 0.620511 | 3_4:+69555652 | Msa0517830:CDS |
| TATTGCTGACCGTATGAGCA+AGG | 0.626661 | 3_4:+69555714 | Msa0517830:CDS |
| GAGAGGGGTATTTATATTAG+GGG | 0.630191 | 3_4:-69553521 | None:intergenic |
| GAGCCTCAGTTAGAAGCACT+GGG | 0.630481 | 3_4:-69555011 | None:intergenic |
| AGTGTGACTCACACCATCGC+CGG | 0.631174 | 3_4:-69555254 | None:intergenic |
| TGGATAAGAGGTGAGATCGG+AGG | 0.631713 | 3_4:+69556103 | Msa0517830:three_prime_UTR |
| GCACGGTATTGTCAGTAACT+GGG | 0.632162 | 3_4:+69554924 | Msa0517830:CDS |
| GGTCAAAAGGATGCCTATGT+TGG | 0.633441 | 3_4:+69554850 | Msa0517830:CDS |
| TCCAAACGAAGGATAGCATG+TGG | 0.637382 | 3_4:-69555304 | None:intergenic |
| TTGTGACAATGGAACTGGAA+TGG | 0.639550 | 3_4:+69554643 | Msa0517830:CDS |
| CTCTATCATGAAGTGTGATG+TGG | 0.640270 | 3_4:+69555630 | Msa0517830:CDS |
| GGACTTAGAAGCATTTCCTG+TGG | 0.642629 | 3_4:-69555999 | None:intergenic |
| GGAAAAGGACTTCTGGGCAA+CGG | 0.648496 | 3_4:-69555555 | None:intergenic |
| GTGTGATGTGGATATCAGAA+AGG | 0.654508 | 3_4:+69555642 | Msa0517830:CDS |
| GGAAAGTACTGAGAGAAGCA+AGG | 0.656348 | 3_4:-69555825 | None:intergenic |
| GTTCCATTGTCACAAACAAG+GGG | 0.658903 | 3_4:-69554635 | None:intergenic |
| CAATGGAACTGGAATGGTGA+AGG | 0.661223 | 3_4:+69554649 | Msa0517830:CDS |
| TGAAGATCCTCACTGAGAGA+GGG | 0.661425 | 3_4:+69555359 | Msa0517830:CDS |
| TTATCACAATTGGAGCTGAG+AGG | 0.664936 | 3_4:+69555530 | Msa0517830:CDS |
| TGAGGCTCCACTTAACCCAA+AGG | 0.668440 | 3_4:+69555026 | Msa0517830:CDS |
| TGACACCAGTATGACGAGGT+CGG | 0.672228 | 3_4:-69554816 | None:intergenic |
| GCACCCAGTGCTTCTAACTG+AGG | 0.673440 | 3_4:+69555008 | Msa0517830:CDS |
| CCAAACGAAGGATAGCATGT+GGG | 0.675471 | 3_4:-69555303 | None:intergenic |
| TTGCAGATGTGGATATCCAA+GGG | 0.681771 | 3_4:+69555946 | Msa0517830:intron |
| CTGGATGGCCACATACATGG+CGG | 0.687535 | 3_4:-69555097 | None:intergenic |
| CTTCATGATAGAGTTGTAGG+TGG | 0.694993 | 3_4:-69555620 | None:intergenic |
| GTTATGGAACTATGTTGACA+TGG | 0.703939 | 3_4:+69556083 | Msa0517830:three_prime_UTR |
| GACCAGCAAGATCCAAACGA+AGG | 0.704830 | 3_4:-69555315 | None:intergenic |
| ACATGTACCCTCTCTCAGTG+AGG | 0.709732 | 3_4:-69555366 | None:intergenic |
| TATTAGGGGAGAGAGTGGCG+TGG | 0.717542 | 3_4:-69553507 | None:intergenic |
| TGACAATACCGTGCTCAATG+GGG | 0.720666 | 3_4:-69554915 | None:intergenic |
| TGTTCACCACCTCAGCTGAG+CGG | 0.722178 | 3_4:+69555386 | Msa0517830:CDS |
| CCAACCTACAGACATCCAGT+GGG | 0.728027 | 3_4:-69556165 | None:intergenic |
| ACCATGACACCAGTATGACG+AGG | 0.732971 | 3_4:-69554820 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATCTTTTAAATTTGTAAT+TGG | + | chr3_4:69554513-69554532 | Msa0517830:intron | 10.0% |
| !! | AAAATTGAATTTGGAAATTT+GGG | - | chr3_4:69553427-69553446 | None:intergenic | 15.0% |
| !!! | GTTAATTTGAAAATTGAATT+TGG | - | chr3_4:69553436-69553455 | None:intergenic | 15.0% |
| !!! | TCAAATTAACCATTTTATTA+CGG | + | chr3_4:69553446-69553465 | Msa0517830:five_prime_UTR | 15.0% |
| !! | AACTAAATAAAGTTCTATAA+AGG | - | chr3_4:69554150-69554169 | None:intergenic | 15.0% |
| !!! | TAGAACTTTATTTAGTTATT+AGG | + | chr3_4:69554153-69554172 | Msa0517830:intron | 15.0% |
| !! | AAAACAGAAATGAAATAAAA+CGG | - | chr3_4:69554402-69554421 | None:intergenic | 15.0% |
| !! | TTTAATTGATATATTTGACT+CGG | + | chr3_4:69556592-69556611 | Msa0517830:three_prime_UTR | 15.0% |
| !!! | TATCTTCCATTTCAAAATTT+TGG | + | chr3_4:69553395-69553414 | Msa0517830:five_prime_UTR | 20.0% |
| !! | GAAAATTGAATTTGGAAATT+TGG | - | chr3_4:69553428-69553447 | None:intergenic | 20.0% |
| !! | ATCTAAACCTAAATAATGAT+CGG | - | chr3_4:69553707-69553726 | None:intergenic | 20.0% |
| !!! | TATACAATGTGAACTTTTTA+TGG | + | chr3_4:69554448-69554467 | Msa0517830:intron | 20.0% |
| !! | ATCGTTAATAACAATTCAAA+TGG | - | chr3_4:69554557-69554576 | None:intergenic | 20.0% |
| !! | TTCAAAAATGAAAAGATTGA+GGG | - | chr3_4:69555215-69555234 | None:intergenic | 20.0% |
| !! | TTTCAAAAATGAAAAGATTG+AGG | - | chr3_4:69555216-69555235 | None:intergenic | 20.0% |
| !!! | AATCTTTTCATTTTTGAAAC+AGG | + | chr3_4:69555217-69555236 | Msa0517830:intron | 20.0% |
| !! | CAAATGTAAAATCTGAAAAA+GGG | - | chr3_4:69556245-69556264 | None:intergenic | 20.0% |
| !! | TCAAATGTAAAATCTGAAAA+AGG | - | chr3_4:69556246-69556265 | None:intergenic | 20.0% |
| !!! | TTTTCAGATTTTACATTTGA+AGG | + | chr3_4:69556246-69556265 | Msa0517830:three_prime_UTR | 20.0% |
| !!! | AAGGTTTTTTTTTTTCCTTT+TGG | + | chr3_4:69556265-69556284 | Msa0517830:three_prime_UTR | 20.0% |
| !!! | CAAAATTAAAATTTGAGATC+GGG | - | chr3_4:69556529-69556548 | None:intergenic | 20.0% |
| !!! | CCAAAATTAAAATTTGAGAT+CGG | - | chr3_4:69556530-69556549 | None:intergenic | 20.0% |
| !!! | TTTAATTTTGGATGAAAGAA+AGG | + | chr3_4:69556539-69556558 | Msa0517830:three_prime_UTR | 20.0% |
| !! | TTAATTGATATATTTGACTC+GGG | + | chr3_4:69556593-69556612 | Msa0517830:three_prime_UTR | 20.0% |
| !!! | TTAGGACCAAAATTTTGAAA+TGG | - | chr3_4:69553404-69553423 | None:intergenic | 25.0% |
| !! | TTTTGTTCCGATCATTATTT+AGG | + | chr3_4:69553697-69553716 | Msa0517830:intron | 25.0% |
| ! | TATTTGAACTGATCTTGTAT+CGG | + | chr3_4:69554001-69554020 | Msa0517830:intron | 25.0% |
| ! | CATTTGCAATAAGAAACTTT+AGG | + | chr3_4:69554222-69554241 | Msa0517830:intron | 25.0% |
| ! | TTGATTTATCAAATGTTCTG+TGG | + | chr3_4:69556139-69556158 | Msa0517830:three_prime_UTR | 25.0% |
| !! | GCTTGTATTGAGATATTTTA+CGG | + | chr3_4:69556309-69556328 | Msa0517830:three_prime_UTR | 25.0% |
| !!! | CCGATCTCAAATTTTAATTT+TGG | + | chr3_4:69556527-69556546 | Msa0517830:three_prime_UTR | 25.0% |
| ! | TGAATTTGGAAATTTGGGTT+AGG | - | chr3_4:69553422-69553441 | None:intergenic | 30.0% |
| ACTAAAAACGCATGAACAAT+CGG | - | chr3_4:69553776-69553795 | None:intergenic | 30.0% | |
| ! | GATTCTGATCTTTTACATAC+TGG | + | chr3_4:69553968-69553987 | Msa0517830:intron | 30.0% |
| TTCGAAGTAACACCAAAAAA+TGG | - | chr3_4:69554036-69554055 | None:intergenic | 30.0% | |
| !! | GTGTTACTTCGAAAATGTTT+GGG | + | chr3_4:69554043-69554062 | Msa0517830:intron | 30.0% |
| !! | TGATTTGTTCACTGGATTTA+CGG | + | chr3_4:69554072-69554091 | Msa0517830:intron | 30.0% |
| !! | TCTGTTTTTCTTTGAAAAGC+CGG | + | chr3_4:69554334-69554353 | Msa0517830:intron | 30.0% |
| GAACTTAGATTAGATAACTC+CGG | - | chr3_4:69554356-69554375 | None:intergenic | 30.0% | |
| ! | AACTGTTGTTTAGCAAAAGA+TGG | + | chr3_4:69554592-69554611 | Msa0517830:intron | 30.0% |
| ! | AAGAATACCTCTTTTGGATT+GGG | - | chr3_4:69554884-69554903 | None:intergenic | 30.0% |
| ! | TAAGAATACCTCTTTTGGAT+TGG | - | chr3_4:69554885-69554904 | None:intergenic | 30.0% |
| GAAAGTCTCAAACATGATTT+GGG | - | chr3_4:69555070-69555089 | None:intergenic | 30.0% | |
| TGAAAGTCTCAAACATGATT+TGG | - | chr3_4:69555071-69555090 | None:intergenic | 30.0% | |
| !!! | TTTTGAAACAGGTATTGTGT+TGG | + | chr3_4:69555228-69555247 | Msa0517830:intron | 30.0% |
| AAGTTCTTGTTCATAATCCA+AGG | - | chr3_4:69555452-69555471 | None:intergenic | 30.0% | |
| AAAAACTATGAACTTCCTGA+TGG | + | chr3_4:69555502-69555521 | Msa0517830:CDS | 30.0% | |
| GACATCACATACATTATACA+TGG | - | chr3_4:69555888-69555907 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTGTTTTGCAGATG+TGG | + | chr3_4:69555935-69555954 | Msa0517830:intron | 30.0% |
| ! | TTACCATTATCGCATCATTT+TGG | - | chr3_4:69556023-69556042 | None:intergenic | 30.0% |
| !!! | ATGGTAAGTTATTTTTGCTG+TGG | + | chr3_4:69556036-69556055 | Msa0517830:three_prime_UTR | 30.0% |
| GATGAAAGAAAGGAAAAACA+TGG | + | chr3_4:69556549-69556568 | Msa0517830:three_prime_UTR | 30.0% | |
| AAATGGAAGATACTAGAGAG+AGG | - | chr3_4:69553387-69553406 | None:intergenic | 35.0% | |
| GATGAGTGACCGTAATAAAA+TGG | - | chr3_4:69553458-69553477 | None:intergenic | 35.0% | |
| ATTTATATTAGGGGAGAGAG+TGG | - | chr3_4:69553515-69553534 | None:intergenic | 35.0% | |
| !! | GAGAGGGGTATTTATATTAG+GGG | - | chr3_4:69553524-69553543 | None:intergenic | 35.0% |
| !! | GGAGAGGGGTATTTATATTA+GGG | - | chr3_4:69553525-69553544 | None:intergenic | 35.0% |
| GAGAGAAGAGGATTGAAAAT+GGG | - | chr3_4:69553546-69553565 | None:intergenic | 35.0% | |
| AGAGAGAAGAGGATTGAAAA+TGG | - | chr3_4:69553547-69553566 | None:intergenic | 35.0% | |
| ! | TGTTTGAAGTCTCTCTTTCT+CGG | - | chr3_4:69553591-69553610 | None:intergenic | 35.0% |
| ! | GTAACTGATTTAGTAGATCG+TGG | + | chr3_4:69553883-69553902 | Msa0517830:intron | 35.0% |
| ATTTAGTAGATCGTGGATAC+TGG | + | chr3_4:69553890-69553909 | Msa0517830:intron | 35.0% | |
| ! | GATCTTTTACATACTGGATC+TGG | + | chr3_4:69553974-69553993 | Msa0517830:intron | 35.0% |
| !!! | CGGCTTTAGATTCCATTTTT+TGG | + | chr3_4:69554021-69554040 | Msa0517830:intron | 35.0% |
| !! | GGTGTTACTTCGAAAATGTT+TGG | + | chr3_4:69554042-69554061 | Msa0517830:intron | 35.0% |
| !!! | GGTTTTGTTGATTTGTTCAC+TGG | + | chr3_4:69554064-69554083 | Msa0517830:intron | 35.0% |
| !! | TCTTCAATTTGCTATGACTC+AGG | - | chr3_4:69554192-69554211 | None:intergenic | 35.0% |
| ! | AAAACAGAAGAGCATGTACA+TGG | - | chr3_4:69554322-69554341 | None:intergenic | 35.0% |
| AATTGGTTGAACTTCGTTTG+TGG | + | chr3_4:69554530-69554549 | Msa0517830:intron | 35.0% | |
| AGTTCCATTGTCACAAACAA+GGG | - | chr3_4:69554639-69554658 | None:intergenic | 35.0% | |
| TTCATCTACAATTTGTGTGC+AGG | + | chr3_4:69554741-69554760 | Msa0517830:intron | 35.0% | |
| ! | GAGAGTAAGAATACCTCTTT+TGG | - | chr3_4:69554890-69554909 | None:intergenic | 35.0% |
| !!! | TCTTTTCTCTATTGGCCTTT+GGG | - | chr3_4:69555044-69555063 | None:intergenic | 35.0% |
| !!! | ATCTTTTCTCTATTGGCCTT+TGG | - | chr3_4:69555045-69555064 | None:intergenic | 35.0% |
| ! | TTGGGTCATCTTTTCTCTAT+TGG | - | chr3_4:69555052-69555071 | None:intergenic | 35.0% |
| AAGATTGAGGGACAGAATAA+TGG | - | chr3_4:69555203-69555222 | None:intergenic | 35.0% | |
| ! | ATTGTGATAACTTGTCCATC+AGG | - | chr3_4:69555520-69555539 | None:intergenic | 35.0% |
| GATGGACAAGTTATCACAAT+TGG | + | chr3_4:69555520-69555539 | Msa0517830:CDS | 35.0% | |
| ! | CTTTTCCAACCATCAATGAT+CGG | + | chr3_4:69555571-69555590 | Msa0517830:CDS | 35.0% |
| ACACTTCATGATAGAGTTGT+AGG | - | chr3_4:69555626-69555645 | None:intergenic | 35.0% | |
| GATATCAGAAAGGATCTGTA+CGG | + | chr3_4:69555652-69555671 | Msa0517830:CDS | 35.0% | |
| GTGATAAAATAATCACCTGC+TGG | - | chr3_4:69555849-69555868 | None:intergenic | 35.0% | |
| AGTCCAAAATGATGCGATAA+TGG | + | chr3_4:69556017-69556036 | Msa0517830:exon | 35.0% | |
| !!! | TTTTGCTGTGGTTGCTTTTT+TGG | + | chr3_4:69556048-69556067 | Msa0517830:three_prime_UTR | 35.0% |
| GTTATGGAACTATGTTGACA+TGG | + | chr3_4:69556083-69556102 | Msa0517830:three_prime_UTR | 35.0% | |
| ACTATGTTGACATGGATAAG+AGG | + | chr3_4:69556091-69556110 | Msa0517830:three_prime_UTR | 35.0% | |
| AAAATCTGAAAAAGGGCGAA+AGG | - | chr3_4:69556238-69556257 | None:intergenic | 35.0% | |
| CATAAACATGACGTTCCAAA+AGG | - | chr3_4:69556283-69556302 | None:intergenic | 35.0% | |
| TGGATCTACAGAATTATTCC+CGG | + | chr3_4:69556486-69556505 | Msa0517830:three_prime_UTR | 35.0% | |
| TACAGAATTATTCCCGGAAA+GGG | + | chr3_4:69556492-69556511 | Msa0517830:three_prime_UTR | 35.0% | |
| AGAGAGAGGAGAGAGAAATA+GGG | - | chr3_4:69553373-69553392 | None:intergenic | 40.0% | |
| TAGAGAGAGGAGAGAGAAAT+AGG | - | chr3_4:69553374-69553393 | None:intergenic | 40.0% | |
| !! | GGGAGAGGGGTATTTATATT+AGG | - | chr3_4:69553526-69553545 | None:intergenic | 40.0% |
| AGAGGATTGAAAATGGGAGA+GGG | - | chr3_4:69553540-69553559 | None:intergenic | 40.0% | |
| AAGAGGATTGAAAATGGGAG+AGG | - | chr3_4:69553541-69553560 | None:intergenic | 40.0% | |
| AGAGAGAAAATGGATCGAAG+AGG | - | chr3_4:69553634-69553653 | None:intergenic | 40.0% | |
| ! | CCATTTTCTCTCTACTCTCA+CGG | + | chr3_4:69553641-69553660 | Msa0517830:five_prime_UTR | 40.0% |
| GTTCCATTGTCACAAACAAG+GGG | - | chr3_4:69554638-69554657 | None:intergenic | 40.0% | |
| CAGTTCCATTGTCACAAACA+AGG | - | chr3_4:69554640-69554659 | None:intergenic | 40.0% | |
| CTTGTTTGTGACAATGGAAC+TGG | + | chr3_4:69554638-69554657 | Msa0517830:CDS | 40.0% | |
| TTGTGACAATGGAACTGGAA+TGG | + | chr3_4:69554643-69554662 | Msa0517830:CDS | 40.0% | |
| ! | GCTGTGTTTCCAAGTATTGT+TGG | + | chr3_4:69554793-69554812 | Msa0517830:CDS | 40.0% |
| ! | ACAGGTATTGTGTTGGATTC+CGG | + | chr3_4:69555235-69555254 | Msa0517830:intron | 40.0% |
| AGTGCATAACCCTCATAGAT+TGG | - | chr3_4:69555283-69555302 | None:intergenic | 40.0% | |
| GGAAATTGTCCGTGACATAA+AGG | + | chr3_4:69555408-69555427 | Msa0517830:CDS | 40.0% | |
| CAAGCTTCTCCTTTATGTCA+CGG | - | chr3_4:69555420-69555439 | None:intergenic | 40.0% | |
| TTATCACAATTGGAGCTGAG+AGG | + | chr3_4:69555530-69555549 | Msa0517830:CDS | 40.0% | |
| ATGGTTGGAAAAGGACTTCT+GGG | - | chr3_4:69555564-69555583 | None:intergenic | 40.0% | |
| ! | CGATCATTGATGGTTGGAAA+AGG | - | chr3_4:69555573-69555592 | None:intergenic | 40.0% |
| CTTCATGATAGAGTTGTAGG+TGG | - | chr3_4:69555623-69555642 | None:intergenic | 40.0% | |
| CTCTATCATGAAGTGTGATG+TGG | + | chr3_4:69555630-69555649 | Msa0517830:CDS | 40.0% | |
| GTGTGATGTGGATATCAGAA+AGG | + | chr3_4:69555642-69555661 | Msa0517830:CDS | 40.0% | |
| TACGGCAACATTGTTCTTAG+TGG | + | chr3_4:69555670-69555689 | Msa0517830:CDS | 40.0% | |
| TCCTAGCAGCATGAAGATTA+AGG | + | chr3_4:69555753-69555772 | Msa0517830:CDS | 40.0% | |
| ACCTTAATCTTCATGCTGCT+AGG | - | chr3_4:69555757-69555776 | None:intergenic | 40.0% | |
| CAGCATGAAGATTAAGGTTG+TGG | + | chr3_4:69555759-69555778 | Msa0517830:CDS | 40.0% | |
| ! | AGAAAGTACAGTGTCTGGAT+TGG | + | chr3_4:69555793-69555812 | Msa0517830:CDS | 40.0% |
| TTTGCAGATGTGGATATCCA+AGG | + | chr3_4:69555945-69555964 | Msa0517830:intron | 40.0% | |
| TTGCAGATGTGGATATCCAA+GGG | + | chr3_4:69555946-69555965 | Msa0517830:intron | 40.0% | |
| ATTTCCTGTGGACAATGGAT+GGG | - | chr3_4:69555990-69556009 | None:intergenic | 40.0% | |
| ! | TTGGTGTCTCTGTCATGTTA+TGG | + | chr3_4:69556067-69556086 | Msa0517830:three_prime_UTR | 40.0% |
| ACATGGATAAGAGGTGAGAT+CGG | + | chr3_4:69556100-69556119 | Msa0517830:three_prime_UTR | 40.0% | |
| TCACAATCACTCCTTACTAC+AGG | - | chr3_4:69556194-69556213 | None:intergenic | 40.0% | |
| ! | TAGAGTGCTTCTATGCATCA+TGG | + | chr3_4:69556400-69556419 | Msa0517830:three_prime_UTR | 40.0% |
| TTTACTACGCCTGATTTACG+TGG | + | chr3_4:69556466-69556485 | Msa0517830:three_prime_UTR | 40.0% | |
| TCTGTAGATCCACGTAAATC+AGG | - | chr3_4:69556478-69556497 | None:intergenic | 40.0% | |
| CTACAGAATTATTCCCGGAA+AGG | + | chr3_4:69556491-69556510 | Msa0517830:three_prime_UTR | 40.0% | |
| GAGGATTGAAAATGGGAGAG+GGG | - | chr3_4:69553539-69553558 | None:intergenic | 45.0% | |
| GGTGAGAAATGAGAGAGAAG+AGG | - | chr3_4:69553558-69553577 | None:intergenic | 45.0% | |
| CCGTGAGAGTAGAGAGAAAA+TGG | - | chr3_4:69553644-69553663 | None:intergenic | 45.0% | |
| CAGATCACAGATCAGTGACT+AGG | - | chr3_4:69553919-69553938 | None:intergenic | 45.0% | |
| CTAGTCACTGATCTGTGATC+TGG | + | chr3_4:69553917-69553936 | Msa0517830:intron | 45.0% | |
| ! | CAACCCCTTGTTTGTGACAA+TGG | + | chr3_4:69554632-69554651 | Msa0517830:CDS | 45.0% |
| CAATGGAACTGGAATGGTGA+AGG | + | chr3_4:69554649-69554668 | Msa0517830:CDS | 45.0% | |
| TCTACAATTTGTGTGCAGGC+TGG | + | chr3_4:69554745-69554764 | Msa0517830:intron | 45.0% | |
| ATACTTGGAAACACAGCCCT+AGG | - | chr3_4:69554790-69554809 | None:intergenic | 45.0% | |
| !! | TACTGGTGTCATGGTTGGTA+TGG | + | chr3_4:69554828-69554847 | Msa0517830:CDS | 45.0% |
| !! | ACTGGTGTCATGGTTGGTAT+GGG | + | chr3_4:69554829-69554848 | Msa0517830:CDS | 45.0% |
| ! | CATGGTTGGTATGGGTCAAA+AGG | + | chr3_4:69554837-69554856 | Msa0517830:CDS | 45.0% |
| GGTCAAAAGGATGCCTATGT+TGG | + | chr3_4:69554850-69554869 | Msa0517830:CDS | 45.0% | |
| TGACAATACCGTGCTCAATG+GGG | - | chr3_4:69554918-69554937 | None:intergenic | 45.0% | |
| CTGACAATACCGTGCTCAAT+GGG | - | chr3_4:69554919-69554938 | None:intergenic | 45.0% | |
| ACTGACAATACCGTGCTCAA+TGG | - | chr3_4:69554920-69554939 | None:intergenic | 45.0% | |
| AGCACGGTATTGTCAGTAAC+TGG | + | chr3_4:69554923-69554942 | Msa0517830:CDS | 45.0% | |
| GCACGGTATTGTCAGTAACT+GGG | + | chr3_4:69554924-69554943 | Msa0517830:CDS | 45.0% | |
| TGTCAGTAACTGGGATGACA+TGG | + | chr3_4:69554933-69554952 | Msa0517830:CDS | 45.0% | |
| !! | CTATTGGCCTTTGGGTTAAG+TGG | - | chr3_4:69555036-69555055 | None:intergenic | 45.0% |
| TGTACGACCACTTGCATAGA+GGG | - | chr3_4:69555133-69555152 | None:intergenic | 45.0% | |
| TTGTACGACCACTTGCATAG+AGG | - | chr3_4:69555134-69555153 | None:intergenic | 45.0% | |
| TATGCAAGTGGTCGTACAAC+TGG | + | chr3_4:69555135-69555154 | Msa0517830:CDS | 45.0% | |
| TCACACTGTGCCAATCTATG+AGG | + | chr3_4:69555270-69555289 | Msa0517830:CDS | 45.0% | |
| CACACTGTGCCAATCTATGA+GGG | + | chr3_4:69555271-69555290 | Msa0517830:CDS | 45.0% | |
| CCAAACGAAGGATAGCATGT+GGG | - | chr3_4:69555306-69555325 | None:intergenic | 45.0% | |
| TCCAAACGAAGGATAGCATG+TGG | - | chr3_4:69555307-69555326 | None:intergenic | 45.0% | |
| ATCCTTCGTTTGGATCTTGC+TGG | + | chr3_4:69555313-69555332 | Msa0517830:CDS | 45.0% | |
| ATGAAGATCCTCACTGAGAG+AGG | + | chr3_4:69555358-69555377 | Msa0517830:CDS | 45.0% | |
| TGAAGATCCTCACTGAGAGA+GGG | + | chr3_4:69555359-69555378 | Msa0517830:CDS | 45.0% | |
| GAAGCTTGCATATGTTGCCT+TGG | + | chr3_4:69555432-69555451 | Msa0517830:CDS | 45.0% | |
| GATGGTTGGAAAAGGACTTC+TGG | - | chr3_4:69555565-69555584 | None:intergenic | 45.0% | |
| ! | CCATTCCGATCATTGATGGT+TGG | - | chr3_4:69555579-69555598 | None:intergenic | 45.0% |
| CCAACCATCAATGATCGGAA+TGG | + | chr3_4:69555576-69555595 | Msa0517830:CDS | 45.0% | |
| GCTTCCATTCCGATCATTGA+TGG | - | chr3_4:69555583-69555602 | None:intergenic | 45.0% | |
| GGCAACATTGTTCTTAGTGG+TGG | + | chr3_4:69555673-69555692 | Msa0517830:CDS | 45.0% | |
| GGTGGTTCAACTATGTTTCC+TGG | + | chr3_4:69555691-69555710 | Msa0517830:CDS | 45.0% | |
| TATTGCTGACCGTATGAGCA+AGG | + | chr3_4:69555714-69555733 | Msa0517830:CDS | 45.0% | |
| CAGTGATCTCCTTGCTCATA+CGG | - | chr3_4:69555726-69555745 | None:intergenic | 45.0% | |
| ACACTGTACTTTCTCTCTGG+TGG | - | chr3_4:69555787-69555806 | None:intergenic | 45.0% | |
| CAGACACTGTACTTTCTCTC+TGG | - | chr3_4:69555790-69555809 | None:intergenic | 45.0% | |
| ! | CAGAGAGAAAGTACAGTGTC+TGG | + | chr3_4:69555788-69555807 | Msa0517830:CDS | 45.0% |
| ! | AAGTACAGTGTCTGGATTGG+AGG | + | chr3_4:69555796-69555815 | Msa0517830:CDS | 45.0% |
| !! | GGAAAGTACTGAGAGAAGCA+AGG | - | chr3_4:69555828-69555847 | None:intergenic | 45.0% |
| TTCTCTCAGTACTTTCCAGC+AGG | + | chr3_4:69555831-69555850 | Msa0517830:CDS | 45.0% | |
| AGACTCGTCATATTCACCCT+TGG | - | chr3_4:69555965-69555984 | None:intergenic | 45.0% | |
| AAGGGTGAATATGACGAGTC+TGG | + | chr3_4:69555964-69555983 | Msa0517830:CDS | 45.0% | |
| CATTTCCTGTGGACAATGGA+TGG | - | chr3_4:69555991-69556010 | None:intergenic | 45.0% | |
| ! | GAAGCATTTCCTGTGGACAA+TGG | - | chr3_4:69555995-69556014 | None:intergenic | 45.0% |
| !! | GGACTTAGAAGCATTTCCTG+TGG | - | chr3_4:69556002-69556021 | None:intergenic | 45.0% |
| !! | TAGGTTGGTTGCCTGTAGTA+AGG | + | chr3_4:69556180-69556199 | Msa0517830:three_prime_UTR | 45.0% |
| ! | AAATTTGAGATCGGGCAACC+AGG | - | chr3_4:69556521-69556540 | None:intergenic | 45.0% |
| !!! | ATTTTAATTCTTTTAAAAAT+TGG | - | chr3_4:69556426-69556445 | None:intergenic | 5.0% |
| GTGGGTTTAGGTGTGGTTGT+GGG | - | chr3_4:69553491-69553510 | None:intergenic | 50.0% | |
| GCAAAAGATGGCAGATGCTG+AGG | + | chr3_4:69554604-69554623 | Msa0517830:intron | 50.0% | |
| ! | TTGCTGGTGATGATGCTCCT+AGG | + | chr3_4:69554770-69554789 | Msa0517830:CDS | 50.0% |
| ! | TGCTGGTGATGATGCTCCTA+GGG | + | chr3_4:69554771-69554790 | Msa0517830:CDS | 50.0% |
| TGACACCAGTATGACGAGGT+CGG | - | chr3_4:69554819-69554838 | None:intergenic | 50.0% | |
| ! | ACCTCGTCATACTGGTGTCA+TGG | + | chr3_4:69554819-69554838 | Msa0517830:CDS | 50.0% |
| ACCATGACACCAGTATGACG+AGG | - | chr3_4:69554823-69554842 | None:intergenic | 50.0% | |
| !! | CGTCATACTGGTGTCATGGT+TGG | + | chr3_4:69554823-69554842 | Msa0517830:CDS | 50.0% |
| TTGGGCTTCGTCACCAACAT+AGG | - | chr3_4:69554866-69554885 | None:intergenic | 50.0% | |
| GACGAAGCCCAATCCAAAAG+AGG | + | chr3_4:69554874-69554893 | Msa0517830:CDS | 50.0% | |
| CTCAAGTACCCCATTGAGCA+CGG | + | chr3_4:69554907-69554926 | Msa0517830:CDS | 50.0% | |
| GGGATGACATGGAGAAGATC+TGG | + | chr3_4:69554944-69554963 | Msa0517830:CDS | 50.0% | |
| !! | GAGCCTCAGTTAGAAGCACT+GGG | - | chr3_4:69555014-69555033 | None:intergenic | 50.0% |
| TGAGGCTCCACTTAACCCAA+AGG | + | chr3_4:69555026-69555045 | Msa0517830:CDS | 50.0% | |
| ATTGTGTTGGATTCCGGCGA+TGG | + | chr3_4:69555241-69555260 | Msa0517830:CDS | 50.0% | |
| CCCACATGCTATCCTTCGTT+TGG | + | chr3_4:69555303-69555322 | Msa0517830:CDS | 50.0% | |
| GACCAGCAAGATCCAAACGA+AGG | - | chr3_4:69555318-69555337 | None:intergenic | 50.0% | |
| ACATGTACCCTCTCTCAGTG+AGG | - | chr3_4:69555369-69555388 | None:intergenic | 50.0% | |
| GGAAAAGGACTTCTGGGCAA+CGG | - | chr3_4:69555558-69555577 | None:intergenic | 50.0% | |
| ATGATCGGAATGGAAGCTGC+TGG | + | chr3_4:69555586-69555605 | Msa0517830:CDS | 50.0% | |
| CTCATACGGTCAGCAATACC+AGG | - | chr3_4:69555712-69555731 | None:intergenic | 50.0% | |
| TGGATAAGAGGTGAGATCGG+AGG | + | chr3_4:69556103-69556122 | Msa0517830:three_prime_UTR | 50.0% | |
| GGATAAGAGGTGAGATCGGA+GGG | + | chr3_4:69556104-69556123 | Msa0517830:three_prime_UTR | 50.0% | |
| CCAACCTACAGACATCCAGT+GGG | - | chr3_4:69556168-69556187 | None:intergenic | 50.0% | |
| ACCAACCTACAGACATCCAG+TGG | - | chr3_4:69556169-69556188 | None:intergenic | 50.0% | |
| CGTGGGTTTAGGTGTGGTTG+TGG | - | chr3_4:69553492-69553511 | None:intergenic | 55.0% | |
| ATTAGGGGAGAGAGTGGCGT+GGG | - | chr3_4:69553509-69553528 | None:intergenic | 55.0% | |
| TATTAGGGGAGAGAGTGGCG+TGG | - | chr3_4:69553510-69553529 | None:intergenic | 55.0% | |
| CTCTTTCTCGGCGAGAAGTG+TGG | - | chr3_4:69553579-69553598 | None:intergenic | 55.0% | |
| TGTGTGCAGGCTGGATTTGC+TGG | + | chr3_4:69554754-69554773 | Msa0517830:intron | 55.0% | |
| CGAGGTCGGCCAACAATACT+TGG | - | chr3_4:69554805-69554824 | None:intergenic | 55.0% | |
| !! | AGAAGCACTGGGTGCTCTTC+AGG | - | chr3_4:69555003-69555022 | None:intergenic | 55.0% |
| GCACCCAGTGCTTCTAACTG+AGG | + | chr3_4:69555008-69555027 | Msa0517830:CDS | 55.0% | |
| ! | GGAGCCTCAGTTAGAAGCAC+TGG | - | chr3_4:69555015-69555034 | None:intergenic | 55.0% |
| CAATGTGCCCGCCATGTATG+TGG | + | chr3_4:69555089-69555108 | Msa0517830:CDS | 55.0% | |
| TGGATGGCCACATACATGGC+GGG | - | chr3_4:69555099-69555118 | None:intergenic | 55.0% | |
| CTGGATGGCCACATACATGG+CGG | - | chr3_4:69555100-69555119 | None:intergenic | 55.0% | |
| AGCCTGGATGGCCACATACA+TGG | - | chr3_4:69555103-69555122 | None:intergenic | 55.0% | |
| GTCCTCTCCCTCTATGCAAG+TGG | + | chr3_4:69555123-69555142 | Msa0517830:CDS | 55.0% | |
| GACCACTTGCATAGAGGGAG+AGG | - | chr3_4:69555128-69555147 | None:intergenic | 55.0% | |
| AGTGTGACTCACACCATCGC+CGG | - | chr3_4:69555257-69555276 | None:intergenic | 55.0% | |
| TGTTCACCACCTCAGCTGAG+CGG | + | chr3_4:69555386-69555405 | Msa0517830:CDS | 55.0% | |
| AATTTCCCGCTCAGCTGAGG+TGG | - | chr3_4:69555395-69555414 | None:intergenic | 55.0% | |
| GACAATTTCCCGCTCAGCTG+AGG | - | chr3_4:69555398-69555417 | None:intergenic | 55.0% | |
| CTTCATGCTGCTAGGAGCCA+GGG | - | chr3_4:69555749-69555768 | None:intergenic | 55.0% | |
| TCTTCATGCTGCTAGGAGCC+AGG | - | chr3_4:69555750-69555769 | None:intergenic | 55.0% | |
| AATGTTCTGTGGCAGCCCAC+TGG | + | chr3_4:69556150-69556169 | Msa0517830:three_prime_UTR | 55.0% | |
| CCCACTGGATGTCTGTAGGT+TGG | + | chr3_4:69556165-69556184 | Msa0517830:three_prime_UTR | 55.0% | |
| TATTCCCGGAAAGGGTTGCC+TGG | + | chr3_4:69556500-69556519 | Msa0517830:three_prime_UTR | 55.0% | |
| GAGTGGCGTGGGTTTAGGTG+TGG | - | chr3_4:69553498-69553517 | None:intergenic | 60.0% | |
| GGAGAGAGTGGCGTGGGTTT+AGG | - | chr3_4:69553503-69553522 | None:intergenic | 60.0% | |
| GTTGGCCGACCTCGTCATAC+TGG | + | chr3_4:69554811-69554830 | Msa0517830:CDS | 60.0% | |
| CGCCATGTATGTGGCCATCC+AGG | + | chr3_4:69555098-69555117 | Msa0517830:CDS | 60.0% | |
| CATAGAGGGAGAGGACAGCC+TGG | - | chr3_4:69555119-69555138 | None:intergenic | 60.0% | |
| GTTCACCACCTCAGCTGAGC+GGG | + | chr3_4:69555387-69555406 | Msa0517830:CDS | 60.0% | |
| GAGCAAGGAGATCACTGCCC+TGG | + | chr3_4:69555729-69555748 | Msa0517830:CDS | 60.0% | |
| CTGGCCCATCCATTGTCCAC+AGG | + | chr3_4:69555983-69556002 | Msa0517830:CDS | 60.0% | |
| GCAGCCCACTGGATGTCTGT+AGG | + | chr3_4:69556161-69556180 | Msa0517830:three_prime_UTR | 60.0% | |
| GCAACCAGGCAACCCTTTCC+GGG | - | chr3_4:69556507-69556526 | None:intergenic | 60.0% | |
| GGCAACCAGGCAACCCTTTC+CGG | - | chr3_4:69556508-69556527 | None:intergenic | 60.0% | |
| GAGGGAGAGGACAGCCTGGA+TGG | - | chr3_4:69555115-69555134 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 69553353 | 69556635 | 69553353 | ID=Msa0517830;Name=Msa0517830 |
| chr3_4 | mRNA | 69553353 | 69556635 | 69553353 | ID=Msa0517830-mRNA-1;Parent=Msa0517830;Name=Msa0517830-mRNA-1;_AED=0.04;_eAED=0.04;_QI=316|1|1|1|0.75|0.6|5|618|377 |
| chr3_4 | exon | 69553353 | 69553662 | 69553353 | ID=Msa0517830-mRNA-1:exon:18518;Parent=Msa0517830-mRNA-1 |
| chr3_4 | exon | 69554605 | 69554670 | 69554605 | ID=Msa0517830-mRNA-1:exon:18519;Parent=Msa0517830-mRNA-1 |
| chr3_4 | exon | 69554763 | 69555156 | 69554763 | ID=Msa0517830-mRNA-1:exon:18520;Parent=Msa0517830-mRNA-1 |
| chr3_4 | exon | 69555239 | 69555852 | 69555239 | ID=Msa0517830-mRNA-1:exon:18521;Parent=Msa0517830-mRNA-1 |
| chr3_4 | exon | 69555952 | 69556635 | 69555952 | ID=Msa0517830-mRNA-1:exon:18522;Parent=Msa0517830-mRNA-1 |
| chr3_4 | five_prime_UTR | 69553353 | 69553662 | 69553353 | ID=Msa0517830-mRNA-1:five_prime_utr;Parent=Msa0517830-mRNA-1 |
| chr3_4 | five_prime_UTR | 69554605 | 69554610 | 69554605 | ID=Msa0517830-mRNA-1:five_prime_utr;Parent=Msa0517830-mRNA-1 |
| chr3_4 | CDS | 69554611 | 69554670 | 69554611 | ID=Msa0517830-mRNA-1:cds;Parent=Msa0517830-mRNA-1 |
| chr3_4 | CDS | 69554763 | 69555156 | 69554763 | ID=Msa0517830-mRNA-1:cds;Parent=Msa0517830-mRNA-1 |
| chr3_4 | CDS | 69555239 | 69555852 | 69555239 | ID=Msa0517830-mRNA-1:cds;Parent=Msa0517830-mRNA-1 |
| chr3_4 | CDS | 69555952 | 69556017 | 69555952 | ID=Msa0517830-mRNA-1:cds;Parent=Msa0517830-mRNA-1 |
| chr3_4 | three_prime_UTR | 69556018 | 69556635 | 69556018 | ID=Msa0517830-mRNA-1:three_prime_utr;Parent=Msa0517830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
