AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0741740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0741740 MtrunA17_Chr5g0443131 97.742 310 6 1 1 309 1 310 0.0 620
Msa0741740 MtrunA17_Chr4g0051881 44.966 298 135 11 28 303 41 331 3.67e-57 187
Msa0741740 MtrunA17_Chr1g0194481 45.685 197 85 4 125 301 125 319 4.21e-46 158
Msa0741740 MtrunA17_Chr5g0418781 46.429 196 86 5 123 308 89 275 1.27e-45 155
Msa0741740 MtrunA17_Chr7g0270191 46.277 188 88 5 121 301 108 289 1.82e-41 145
Msa0741740 MtrunA17_Chr2g0294231 77.381 84 19 0 141 224 187 270 4.01e-41 146
Msa0741740 MtrunA17_Chr4g0068541 55.556 108 39 2 141 248 192 290 9.48e-35 130
Msa0741740 MtrunA17_Chr8g0335811 52.632 114 49 1 100 213 102 210 9.07e-34 123
Msa0741740 MtrunA17_Chr7g0218081 43.353 173 84 4 64 233 323 484 3.46e-33 127
Msa0741740 MtrunA17_Chr7g0218081 44.762 105 42 2 127 216 183 286 1.14e-18 86.3
Msa0741740 MtrunA17_Chr7g0248721 52.066 121 53 2 95 215 83 198 2.23e-31 117
Msa0741740 MtrunA17_Chr3g0129361 66.216 74 25 0 140 213 127 200 3.09e-31 116
Msa0741740 MtrunA17_Chr5g0418191 48.760 121 52 2 131 241 294 414 3.32e-31 121
Msa0741740 MtrunA17_Chr5g0418191 41.071 112 50 3 157 261 151 253 4.66e-17 81.3
Msa0741740 MtrunA17_Chr5g0445311 51.402 107 49 1 138 244 345 448 2.38e-30 120
Msa0741740 MtrunA17_Chr5g0445311 57.627 59 24 1 158 216 201 258 5.05e-14 72.4
Msa0741740 MtrunA17_Chr3g0129321 44.538 119 60 1 117 229 72 190 4.55e-30 113
Msa0741740 MtrunA17_Chr8g0383351 65.333 75 25 1 140 213 142 216 8.73e-30 113
Msa0741740 MtrunA17_Chr7g0249311 41.611 149 78 3 115 254 345 493 1.42e-29 118
Msa0741740 MtrunA17_Chr7g0249311 58.571 70 27 2 157 225 179 247 1.86e-17 82.8
Msa0741740 MtrunA17_Chr4g0042831 60.000 80 32 0 138 217 259 338 2.55e-29 115
Msa0741740 MtrunA17_Chr4g0042831 42.500 80 42 1 137 216 129 204 2.16e-15 75.9
Msa0741740 MtrunA17_Chr3g0101131 57.303 89 37 1 138 226 396 483 3.21e-29 117
Msa0741740 MtrunA17_Chr3g0101131 38.679 106 64 1 124 229 210 314 6.09e-14 72.4
Msa0741740 MtrunA17_Chr3g0079691 50.485 103 46 1 121 218 454 556 3.59e-29 117
Msa0741740 MtrunA17_Chr3g0079691 59.375 64 25 1 157 220 280 342 2.46e-17 82.4
Msa0741740 MtrunA17_Chr1g0150801 66.234 77 25 1 137 213 83 158 1.10e-28 108
Msa0741740 MtrunA17_Chr4g0004911 62.025 79 30 0 138 216 317 395 1.38e-28 114
Msa0741740 MtrunA17_Chr4g0004911 46.392 97 51 1 157 253 184 279 1.27e-18 85.9
Msa0741740 MtrunA17_Chr5g0432161 53.922 102 43 2 126 224 387 487 1.56e-28 115
Msa0741740 MtrunA17_Chr5g0432161 55.000 60 26 1 157 216 244 302 4.74e-14 72.4
Msa0741740 MtrunA17_Chr7g0243891 44.079 152 67 4 79 227 307 443 1.87e-28 114
Msa0741740 MtrunA17_Chr7g0243891 56.250 64 27 1 157 220 216 278 2.20e-15 76.6
Msa0741740 MtrunA17_Chr3g0106491 52.381 105 44 2 119 217 321 425 2.85e-28 114
Msa0741740 MtrunA17_Chr3g0106491 51.471 68 32 1 157 224 198 264 1.35e-14 73.9
Msa0741740 MtrunA17_Chr7g0224801 65.217 69 24 0 145 213 81 149 7.65e-28 106
Msa0741740 MtrunA17_Chr7g0249301 56.790 81 35 0 138 218 273 353 3.94e-27 109
Msa0741740 MtrunA17_Chr7g0249301 54.930 71 30 2 156 225 61 130 1.91e-16 79.0
Msa0741740 MtrunA17_Chr7g0263531 45.455 121 52 2 119 225 309 429 1.70e-26 108
Msa0741740 MtrunA17_Chr7g0263531 55.405 74 30 2 158 229 190 262 5.72e-17 80.9
Msa0741740 MtrunA17_Chr1g0188941 51.899 79 38 0 141 219 35 113 2.62e-26 100
Msa0741740 MtrunA17_Chr3g0099641 31.356 236 119 6 82 288 171 392 3.99e-26 107
Msa0741740 MtrunA17_Chr8g0383251 54.762 84 38 0 135 218 86 169 4.28e-26 102
Msa0741740 MtrunA17_Chr8g0386241 50.000 86 43 0 128 213 74 159 2.91e-25 99.8
Msa0741740 MtrunA17_Chr2g0302391 34.132 167 105 3 90 255 146 308 1.14e-23 100
Msa0741740 MtrunA17_Chr5g0447701 51.648 91 43 1 142 232 237 326 2.46e-22 95.9
Msa0741740 MtrunA17_Chr7g0238921 66.667 57 19 0 157 213 124 180 8.82e-22 93.6
Msa0741740 MtrunA17_Chr6g0485431 48.148 81 41 1 143 222 140 220 2.81e-21 92.8
Msa0741740 MtrunA17_Chr1g0147881 40.187 107 62 2 123 227 227 333 6.41e-21 91.3
Msa0741740 MtrunA17_Chr2g0288871 35.374 147 79 4 85 216 220 365 1.12e-20 92.4
Msa0741740 MtrunA17_Chr2g0333851 50.000 82 38 2 139 217 149 230 2.62e-20 89.4
Msa0741740 MtrunA17_Chr2g0322391 40.385 104 55 2 133 229 325 428 3.07e-20 90.9
Msa0741740 MtrunA17_Chr4g0074001 47.500 80 42 0 138 217 340 419 5.25e-20 90.1
Msa0741740 MtrunA17_Chr4g0075201 46.914 81 42 1 137 216 247 327 5.87e-20 90.1
Msa0741740 MtrunA17_Chr7g0270831 49.351 77 38 1 141 216 200 276 6.75e-20 89.4
Msa0741740 MtrunA17_Chr1g0150281 40.594 101 50 4 119 213 101 197 6.88e-20 87.8
Msa0741740 MtrunA17_Chr4g0025061 43.269 104 52 2 137 233 340 443 1.08e-19 89.4
Msa0741740 MtrunA17_Chr4g0025051 44.330 97 47 2 144 233 322 418 2.25e-19 88.6
Msa0741740 MtrunA17_Chr4g0060271 47.436 78 40 1 140 216 238 315 2.43e-19 88.6
Msa0741740 MtrunA17_Chr5g0401821 43.434 99 52 2 134 231 176 271 3.16e-19 85.5
Msa0741740 MtrunA17_Chr4g0053281 34.615 182 108 5 54 231 164 338 3.79e-19 86.3
Msa0741740 MtrunA17_Chr2g0284321 55.000 60 26 1 158 216 36 95 4.98e-19 84.0
Msa0741740 MtrunA17_Chr4g0051181 47.436 78 40 1 141 217 227 304 6.53e-19 87.0
Msa0741740 MtrunA17_Chr8g0387501 55.556 63 27 1 156 217 128 190 6.89e-19 84.7
Msa0741740 MtrunA17_Chr3g0139021 41.837 98 56 1 118 214 275 372 6.98e-19 86.3
Msa0741740 MtrunA17_Chr7g0216891 44.681 94 47 2 141 233 203 292 9.73e-19 86.7
Msa0741740 MtrunA17_Chr8g0379461 41.489 94 54 1 126 218 45 138 1.84e-18 82.8
Msa0741740 MtrunA17_Chr2g0319961 42.718 103 53 3 119 216 39 140 2.88e-18 82.8
Msa0741740 MtrunA17_Chr3g0136961 51.667 60 28 1 155 213 136 195 3.29e-18 83.2
Msa0741740 MtrunA17_Chr8g0348311 56.667 60 25 1 158 216 156 215 5.64e-18 83.2
Msa0741740 MtrunA17_Chr7g0248691 54.098 61 27 1 158 217 155 215 1.34e-17 82.0
Msa0741740 MtrunA17_Chr7g0270051 41.414 99 51 2 128 219 18 116 1.64e-17 80.9
Msa0741740 MtrunA17_Chr2g0293481 55.738 61 26 1 158 217 268 328 2.16e-17 82.4
Msa0741740 MtrunA17_Chr1g0184691 52.239 67 31 1 158 223 294 360 2.73e-17 81.3
Msa0741740 MtrunA17_Chr4g0071521 44.578 83 44 2 133 213 220 302 3.70e-17 80.5
Msa0741740 MtrunA17_Chr4g0001361 44.318 88 45 2 156 239 161 248 4.54e-17 80.1
Msa0741740 MtrunA17_Chr1g0189391 46.479 71 37 1 144 213 84 154 1.17e-16 79.3
Msa0741740 MtrunA17_Chr7g0228941 54.386 57 25 1 158 213 53 109 3.50e-16 73.6
Msa0741740 MtrunA17_Chr1g0202461 46.429 84 43 2 158 240 262 344 6.77e-16 77.4
Msa0741740 MtrunA17_Chr3g0126391 31.122 196 103 8 39 215 10 192 1.32e-15 76.3
Msa0741740 MtrunA17_Chr1g0150271 46.774 62 32 1 156 216 100 161 1.92e-15 74.7
Msa0741740 MtrunA17_Chr8g0387981 43.956 91 42 3 129 211 100 189 5.28e-15 74.7
Msa0741740 MtrunA17_Chr4g0024391 37.500 104 58 2 137 233 209 312 7.19e-15 74.7
Msa0741740 MtrunA17_Chr5g0447711 40.816 98 50 2 142 232 215 311 7.77e-15 73.9
Msa0741740 MtrunA17_Chr5g0432071 46.667 75 38 2 157 230 104 177 1.80e-14 71.2
Msa0741740 MtrunA17_Chr7g0275531 38.835 103 53 3 156 254 117 213 2.57e-14 72.4
Msa0741740 MtrunA17_Chr8g0347251 33.065 124 74 3 96 211 71 193 9.98e-14 70.9
Msa0741740 MtrunA17_Chr2g0289181 46.032 63 33 1 157 218 14 76 1.12e-13 69.3
Msa0741740 MtrunA17_Chr2g0315381 35.484 124 54 3 156 253 143 266 2.59e-13 69.3
Msa0741740 MtrunA17_Chr7g0244981 50.000 58 26 1 157 211 122 179 1.76e-12 66.6
Msa0741740 MtrunA17_Chr2g0315361 50.847 59 26 1 156 211 147 205 1.97e-12 66.6
Msa0741740 MtrunA17_Chr7g0244971 40.449 89 40 3 156 237 122 204 5.12e-12 65.5
Msa0741740 MtrunA17_Chr1g0188961 46.552 58 28 1 177 234 3 57 1.22e-11 59.3
Msa0741740 MtrunA17_Chr3g0128671 33.613 119 59 5 127 232 102 213 1.73e-11 63.9
Msa0741740 MtrunA17_Chr8g0334541 48.276 58 27 1 157 211 103 160 2.23e-11 63.2
Msa0741740 MtrunA17_Chr5g0428351 28.682 129 81 4 121 244 151 273 5.56e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0741740 AT4G18170.1 44.816 299 136 12 22 309 38 318 6.48e-56 184
Msa0741740 AT1G29860.1 45.583 283 120 9 33 303 17 277 6.69e-53 175
Msa0741740 AT5G46350.1 51.579 190 75 5 34 220 71 246 3.61e-46 159
Msa0741740 AT1G69310.4 42.130 216 100 6 90 303 92 284 1.40e-44 154
Msa0741740 AT1G69310.2 42.130 216 100 6 90 303 92 284 1.40e-44 154
Msa0741740 AT1G69310.1 42.130 216 100 6 90 303 92 284 1.40e-44 154
Msa0741740 AT2G47260.1 62.931 116 39 2 127 241 143 255 8.77e-43 150
Msa0741740 AT5G49520.1 47.802 182 70 4 141 301 205 382 2.63e-41 148
Msa0741740 AT1G69310.3 40.187 214 103 6 90 303 92 280 4.70e-39 139
Msa0741740 AT5G07100.2 49.275 138 61 2 90 227 83 211 1.20e-36 130
Msa0741740 AT5G07100.2 43.836 73 41 0 157 229 24 96 6.46e-15 72.8
Msa0741740 AT5G07100.4 49.275 138 61 2 90 227 83 211 1.20e-36 130
Msa0741740 AT5G07100.4 43.836 73 41 0 157 229 24 96 6.46e-15 72.8
Msa0741740 AT5G07100.5 49.275 138 61 2 90 227 83 211 1.20e-36 130
Msa0741740 AT5G07100.5 43.836 73 41 0 157 229 24 96 6.46e-15 72.8
Msa0741740 AT5G07100.3 49.275 138 61 2 90 227 83 211 1.20e-36 130
Msa0741740 AT5G07100.3 43.836 73 41 0 157 229 24 96 6.46e-15 72.8
Msa0741740 AT5G07100.1 49.275 138 61 2 90 227 176 304 2.18e-36 132
Msa0741740 AT5G07100.1 43.836 73 41 0 157 229 117 189 8.53e-15 73.9
Msa0741740 AT3G62340.1 62.353 85 32 0 135 219 96 180 1.46e-33 124
Msa0741740 AT4G39410.1 67.073 82 27 0 132 213 198 279 1.98e-33 125
Msa0741740 AT2G46130.1 67.500 80 26 0 136 215 9 88 3.79e-33 118
Msa0741740 AT2G44745.1 64.286 84 29 1 130 213 119 201 5.86e-33 121
Msa0741740 AT2G03340.1 40.719 167 85 3 57 217 317 475 5.81e-32 124
Msa0741740 AT2G03340.1 59.091 66 25 2 157 222 250 313 2.49e-17 82.8
Msa0741740 AT1G13960.2 62.025 79 30 0 138 216 237 315 3.31e-30 117
Msa0741740 AT1G13960.2 59.701 67 25 2 157 222 76 141 8.98e-18 83.2
Msa0741740 AT1G13960.1 62.025 79 30 0 138 216 390 468 5.48e-30 119
Msa0741740 AT1G13960.1 59.701 67 25 2 157 222 229 294 6.32e-18 84.3
Msa0741740 AT4G26640.5 43.571 140 65 3 84 218 136 266 7.45e-30 117
Msa0741740 AT4G26640.5 52.857 70 32 1 157 226 35 103 5.11e-15 75.5
Msa0741740 AT4G26640.6 43.571 140 65 3 84 218 136 266 7.45e-30 117
Msa0741740 AT4G26640.6 52.857 70 32 1 157 226 35 103 5.11e-15 75.5
Msa0741740 AT4G26640.4 43.571 140 65 3 84 218 136 266 7.45e-30 117
Msa0741740 AT4G26640.4 52.857 70 32 1 157 226 35 103 5.11e-15 75.5
Msa0741740 AT4G26640.3 43.571 140 65 3 84 218 136 266 7.45e-30 117
Msa0741740 AT4G26640.3 52.857 70 32 1 157 226 35 103 5.11e-15 75.5
Msa0741740 AT5G41570.1 53.763 93 43 0 123 215 64 156 8.38e-30 112
Msa0741740 AT1G64000.1 60.000 85 33 1 131 215 89 172 1.56e-29 111
Msa0741740 AT4G26640.1 43.571 140 65 3 84 218 240 370 1.69e-29 117
Msa0741740 AT4G26640.1 52.857 70 32 1 157 226 139 207 5.67e-15 75.5
Msa0741740 AT4G26640.7 43.571 140 65 3 84 218 272 402 2.00e-29 117
Msa0741740 AT4G26640.7 52.857 70 32 1 157 226 171 239 5.75e-15 75.5
Msa0741740 AT4G26640.2 43.571 140 65 3 84 218 312 442 2.37e-29 117
Msa0741740 AT4G26640.2 52.857 70 32 1 157 226 211 279 5.36e-15 75.9
Msa0741740 AT5G26170.1 64.286 70 25 0 144 213 100 169 4.85e-29 109
Msa0741740 AT3G01970.1 62.857 70 26 0 144 213 52 121 1.22e-28 107
Msa0741740 AT3G01080.2 52.747 91 43 0 126 216 313 403 1.27e-28 114
Msa0741740 AT3G01080.2 54.412 68 30 1 157 224 205 271 5.95e-17 81.3
Msa0741740 AT3G01080.1 52.747 91 43 0 126 216 275 365 2.07e-28 114
Msa0741740 AT3G01080.1 54.412 68 30 1 157 224 167 233 7.18e-17 80.9
Msa0741740 AT2G38470.1 59.302 86 34 1 138 223 343 427 2.35e-28 114
Msa0741740 AT2G38470.1 58.333 60 24 1 157 216 184 242 1.86e-14 73.9
Msa0741740 AT2G30250.1 62.651 83 31 0 138 220 309 391 2.83e-28 112
Msa0741740 AT2G30250.1 39.423 104 57 2 127 230 141 238 6.43e-13 68.9
Msa0741740 AT2G46130.2 62.500 80 26 1 136 215 9 84 8.93e-28 104
Msa0741740 AT5G56270.1 56.790 81 35 0 138 218 468 548 1.19e-27 113
Msa0741740 AT5G56270.1 61.667 60 22 1 157 216 273 331 1.31e-16 80.9
Msa0741740 AT5G13080.1 64.286 70 25 0 144 213 54 123 3.80e-27 103
Msa0741740 AT5G64810.1 49.533 107 48 3 127 229 76 180 7.09e-27 104
Msa0741740 AT4G26440.1 45.600 125 56 2 123 237 328 450 1.98e-25 106
Msa0741740 AT4G26440.1 56.667 60 25 1 157 216 178 236 1.15e-14 74.7
Msa0741740 AT2G04880.2 56.250 80 35 0 137 216 263 342 5.56e-25 104
Msa0741740 AT2G04880.2 53.030 66 28 2 156 221 110 172 1.08e-13 71.6
Msa0741740 AT2G04880.1 56.250 80 35 0 137 216 287 366 7.16e-25 104
Msa0741740 AT2G04880.1 46.154 91 44 4 156 246 110 195 1.62e-14 74.3
Msa0741740 AT2G37260.2 47.154 123 55 5 119 238 231 346 3.83e-24 100
Msa0741740 AT2G37260.2 48.315 89 40 3 158 241 84 171 7.55e-16 77.4
Msa0741740 AT2G37260.3 47.154 123 55 5 119 238 233 348 3.94e-24 100
Msa0741740 AT2G37260.3 48.315 89 40 3 158 241 86 173 7.59e-16 77.4
Msa0741740 AT2G37260.1 47.899 119 52 5 119 234 313 424 7.17e-24 101
Msa0741740 AT2G37260.1 54.286 70 28 2 158 224 166 234 9.80e-16 77.8
Msa0741740 AT2G21900.1 41.905 105 57 2 130 230 78 182 1.49e-23 96.3
Msa0741740 AT4G04450.2 42.373 118 61 2 121 231 162 279 1.82e-23 100
Msa0741740 AT4G04450.1 42.373 118 61 2 121 231 256 373 5.63e-23 99.4
Msa0741740 AT4G30935.1 44.118 102 51 2 141 240 315 412 1.97e-21 94.4
Msa0741740 AT4G31800.2 48.750 80 40 1 156 234 110 189 2.63e-21 91.3
Msa0741740 AT4G31800.1 48.750 80 40 1 156 234 175 254 4.66e-21 91.7
Msa0741740 AT1G62300.1 35.570 149 85 3 79 216 224 372 1.20e-20 92.4
Msa0741740 AT1G68150.1 43.689 103 55 2 141 242 219 319 1.30e-20 91.3
Msa0741740 AT2G25000.2 56.452 62 26 1 156 216 102 163 1.52e-20 88.6
Msa0741740 AT2G25000.4 56.452 62 26 1 156 216 102 163 1.52e-20 88.6
Msa0741740 AT1G55600.1 53.425 73 34 0 144 216 294 366 1.72e-20 92.0
Msa0741740 AT2G30590.1 41.228 114 63 3 104 213 257 370 1.95e-20 90.9
Msa0741740 AT4G22070.4 48.148 81 41 1 137 216 277 357 2.19e-20 91.7
Msa0741740 AT4G22070.3 48.148 81 41 1 137 216 277 357 2.19e-20 91.7
Msa0741740 AT4G22070.2 48.148 81 41 1 137 216 277 357 2.19e-20 91.7
Msa0741740 AT4G22070.1 48.148 81 41 1 137 216 277 357 2.19e-20 91.7
Msa0741740 AT2G25000.3 56.452 62 26 1 156 216 124 185 2.52e-20 88.6
Msa0741740 AT2G25000.1 56.452 62 26 1 156 216 145 206 3.95e-20 88.6
Msa0741740 AT4G01250.1 40.217 92 52 2 126 216 99 188 2.44e-19 86.7
Msa0741740 AT1G18860.1 48.718 78 39 1 140 216 222 299 2.79e-19 88.6
Msa0741740 AT1G29280.1 56.452 62 26 1 158 218 75 136 5.12e-19 85.1
Msa0741740 AT1G80840.1 41.667 96 51 2 132 222 117 212 6.65e-19 85.5
Msa0741740 AT5G15130.1 36.641 131 74 2 96 225 174 296 6.91e-19 87.4
Msa0741740 AT5G15130.2 36.641 131 74 2 96 225 132 254 7.14e-19 87.0
Msa0741740 AT3G58710.1 42.857 105 55 2 119 218 29 133 1.33e-18 84.3
Msa0741740 AT4G01720.1 33.846 130 82 2 88 216 173 299 3.13e-18 85.1
Msa0741740 AT4G23550.1 54.545 66 29 1 152 216 135 200 3.48e-18 83.6
Msa0741740 AT3G58710.2 43.810 105 53 3 119 218 29 132 1.05e-17 81.6
Msa0741740 AT5G52830.1 57.377 61 25 1 158 217 166 226 1.11e-17 82.8
Msa0741740 AT3G01080.3 54.412 68 30 1 157 224 205 271 1.96e-17 81.6
Msa0741740 AT5G45050.4 43.564 101 54 3 126 225 1011 1109 1.98e-17 83.6
Msa0741740 AT5G45050.1 44.000 100 53 3 126 224 1150 1247 2.12e-17 83.6
Msa0741740 AT5G45050.2 45.745 94 48 3 132 224 1128 1219 2.29e-17 83.2
Msa0741740 AT5G43290.1 58.621 58 24 0 157 214 114 171 2.33e-17 80.9
Msa0741740 AT4G31550.2 41.975 81 46 1 134 213 222 302 2.40e-17 81.6
Msa0741740 AT2G34830.1 56.667 60 25 1 158 216 216 275 3.57e-17 82.0
Msa0741740 AT2G34830.2 56.667 60 25 1 158 216 225 284 3.66e-17 82.0
Msa0741740 AT2G23320.1 45.679 81 43 1 134 213 217 297 4.46e-17 80.5
Msa0741740 AT4G31550.1 40.964 83 48 1 132 213 221 303 4.97e-17 80.5
Msa0741740 AT5G28650.1 41.573 89 51 1 126 213 231 319 1.11e-16 79.7
Msa0741740 AT1G30650.1 55.000 60 26 1 158 216 218 277 1.57e-16 80.1
Msa0741740 AT4G24240.1 43.373 83 45 2 133 213 256 338 2.53e-16 79.0
Msa0741740 AT2G24570.1 40.476 84 49 1 132 214 218 301 2.68e-16 78.6
Msa0741740 AT3G04670.1 40.449 89 52 1 126 213 231 319 5.60e-16 77.8
Msa0741740 AT1G69810.2 45.570 79 41 2 140 216 128 206 4.53e-15 75.1
Msa0741740 AT1G69810.1 45.570 79 41 2 140 216 186 264 4.97e-15 75.5
Msa0741740 AT2G46400.1 40.816 98 52 3 121 215 69 163 2.09e-14 72.8
Msa0741740 AT2G40750.1 33.784 148 79 5 106 239 99 241 6.12e-14 72.0
Msa0741740 AT1G66560.1 51.724 58 25 1 157 211 103 160 1.13e-13 70.1
Msa0741740 AT4G12020.3 38.400 125 67 3 56 177 544 661 1.36e-13 72.0
Msa0741740 AT4G12020.3 43.421 76 42 1 156 231 467 541 7.20e-12 66.6
Msa0741740 AT4G12020.10 38.400 125 67 3 56 177 544 661 1.38e-13 72.0
Msa0741740 AT4G12020.10 43.421 76 42 1 156 231 467 541 7.53e-12 66.6
Msa0741740 AT4G12020.2 38.400 125 67 3 56 177 544 661 1.42e-13 72.0
Msa0741740 AT4G12020.2 43.421 76 42 1 156 231 467 541 8.11e-12 66.6
Msa0741740 AT4G12020.6 38.400 125 67 3 56 177 544 661 1.43e-13 72.0
Msa0741740 AT4G12020.6 43.421 76 42 1 156 231 467 541 6.83e-12 67.0
Msa0741740 AT4G12020.8 38.400 125 67 3 56 177 544 661 1.43e-13 72.0
Msa0741740 AT4G12020.8 43.421 76 42 1 156 231 467 541 6.83e-12 67.0
Msa0741740 AT4G12020.4 38.400 125 67 3 56 177 544 661 1.44e-13 72.0
Msa0741740 AT4G12020.4 43.421 76 42 1 156 231 467 541 8.03e-12 66.6
Msa0741740 AT4G12020.1 38.400 125 67 3 56 177 544 661 1.47e-13 72.0
Msa0741740 AT4G12020.1 43.421 76 42 1 156 231 467 541 7.98e-12 66.6
Msa0741740 AT4G12020.9 38.400 125 67 3 56 177 544 661 1.47e-13 72.0
Msa0741740 AT4G12020.9 43.421 76 42 1 156 231 467 541 7.98e-12 66.6
Msa0741740 AT4G12020.11 38.400 125 67 3 56 177 544 661 1.52e-13 71.6
Msa0741740 AT4G12020.11 43.421 76 42 1 156 231 467 541 8.36e-12 66.6
Msa0741740 AT4G12020.7 38.400 125 67 3 56 177 544 661 1.54e-13 72.0
Msa0741740 AT4G12020.7 43.421 76 42 1 156 231 467 541 8.35e-12 66.6
Msa0741740 AT4G12020.5 38.400 125 67 3 56 177 477 594 1.55e-13 71.6
Msa0741740 AT4G12020.5 43.421 76 42 1 156 231 400 474 8.00e-12 66.6
Msa0741740 AT3G56400.1 38.400 125 67 5 95 215 61 179 5.44e-13 68.6
Msa0741740 AT1G80590.1 43.662 71 37 1 158 225 86 156 1.01e-12 67.0
Msa0741740 AT1G66600.1 31.285 179 93 5 36 211 9 160 1.34e-12 66.6
Msa0741740 AT4G11070.2 50.000 58 26 1 157 211 109 166 4.60e-12 65.9
Msa0741740 AT4G11070.1 50.000 58 26 1 157 211 141 198 4.97e-12 65.9
Msa0741740 AT5G01900.1 50.877 57 25 1 158 211 111 167 1.51e-11 63.9
Msa0741740 AT1G66550.2 49.123 57 26 1 158 211 104 160 1.53e-11 63.9
Msa0741740 AT2G40740.1 42.500 80 40 2 157 230 173 252 1.63e-11 64.3
Msa0741740 AT1G66550.1 49.123 57 26 1 158 211 109 165 1.67e-11 63.9
Msa0741740 AT2G40740.3 42.500 80 40 2 157 230 182 261 2.11e-11 63.9
Msa0741740 AT5G45260.1 38.532 109 60 4 123 225 1172 1279 5.30e-11 63.9
Msa0741740 AT5G24110.1 45.763 59 29 1 156 211 112 170 6.83e-11 62.4

Find 79 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATATAGAGACTTAATTTA+TGG 0.118571 5_1:+61438310 None:intergenic
TATATATAGCTTGGTGAATT+TGG 0.147557 5_1:-61438165 Msa0741740:three_prime_UTR
AAAGATAAGCAGCCAAAATT+AGG 0.162626 5_1:-61440380 Msa0741740:CDS
CCATCTTCACACCCTAATTT+TGG 0.163856 5_1:+61440368 None:intergenic
GAGGATGATTCTGAAGATTT+TGG 0.268686 5_1:+61440443 None:intergenic
GATGAGGTTGTGGAAGATTT+TGG 0.287257 5_1:+61438488 None:intergenic
TATGTTGTCATCACAATTGA+TGG 0.321462 5_1:+61438691 None:intergenic
GAGGAGAGAAGGTTGAATTA+TGG 0.325115 5_1:+61440756 None:intergenic
GGATATAGATGGAGAAAATA+TGG 0.326911 5_1:-61439760 Msa0741740:CDS
CCATTGAAGTGGAAGCAAAT+AGG 0.331270 5_1:+61438590 None:intergenic
TTGCAGGGAAATATATTGAT+AGG 0.333694 5_1:-61438031 Msa0741740:three_prime_UTR
AGTGATTGAGTTCATCTTGA+TGG 0.346426 5_1:+61440684 None:intergenic
CCTATTTGCTTCCACTTCAA+TGG 0.351388 5_1:-61438590 Msa0741740:CDS
TCTAATATGCATACAAATCT+AGG 0.354231 5_1:+61438254 None:intergenic
AGCTATAAGACTTAATTTGA+TGG 0.363938 5_1:+61440819 None:intergenic
TTCCAACTTCGTCGTGACTA+TGG 0.365043 5_1:-61438433 Msa0741740:CDS
CTTTGTGTTGTTGTCATCAA+TGG 0.382924 5_1:+61440514 None:intergenic
TGCTTCCACTTCAATGGGAT+TGG 0.385569 5_1:-61438584 Msa0741740:CDS
AATTCACCAAGCTATATATA+TGG 0.386825 5_1:+61438168 None:intergenic
CATTGAAGTGGAAGCAAATA+GGG 0.387044 5_1:+61438591 None:intergenic
TTACTACCATCATCATTTCC+TGG 0.387601 5_1:-61438397 Msa0741740:CDS
TACTTTAGTATATAAGTTCA+AGG 0.390389 5_1:+61438364 None:intergenic
TCATCACAATTGATGGATCT+TGG 0.397918 5_1:+61438698 None:intergenic
AATATATTGATAGGACTTGC+TGG 0.411324 5_1:-61438022 None:intergenic
CTATTTGCTTCCACTTCAAT+GGG 0.415381 5_1:-61438589 Msa0741740:CDS
GCATTACCCCTAAGTGTTGC+TGG 0.415723 5_1:+61438643 None:intergenic
AAGATAAGCAGCCAAAATTA+GGG 0.416196 5_1:-61440379 Msa0741740:CDS
GGAGACTTATCATCACTAGT+AGG 0.425549 5_1:-61440479 Msa0741740:CDS
TAGGTATACAGAACAAGTTA+AGG 0.430151 5_1:+61438273 None:intergenic
CTAAATATAGACTGATCAAA+TGG 0.431481 5_1:+61438122 None:intergenic
TCCATCTATATCCATCTTCA+AGG 0.432417 5_1:+61439770 None:intergenic
GGATATACTACAGATTCAAA+TGG 0.436320 5_1:+61438331 None:intergenic
GAAACTGAGAAAAGAAATCT+TGG 0.441450 5_1:+61438548 None:intergenic
TGATAGGGTGTTGTAGTCCA+TGG 0.448321 5_1:+61440580 None:intergenic
GCCATGGAAGAGAGAAGAAA+AGG 0.449660 5_1:+61440728 None:intergenic
AGAAGTGCATTGTGAAGAAA+AGG 0.456809 5_1:-61438735 Msa0741740:CDS
TCACTGTCCAGCAACACTTA+GGG 0.468430 5_1:-61438650 Msa0741740:CDS
TGCTGTTGCTGATGAGGTTG+TGG 0.472117 5_1:+61438478 None:intergenic
AAAAGGTGAGTGAGGAGAGA+AGG 0.476270 5_1:+61440745 None:intergenic
GGATCACTTTGGCTATAAGT+TGG 0.478377 5_1:+61438523 None:intergenic
ATCACTGTCCAGCAACACTT+AGG 0.489854 5_1:-61438651 Msa0741740:CDS
AAGGAGGAGTGTGTAAAAGT+AGG 0.493096 5_1:-61440910 Msa0741740:five_prime_UTR
AAATAATTTAACCTTGGGTA+CGG 0.496177 5_1:+61439715 None:intergenic
GAGATTGATCACCTTGAAGA+TGG 0.500355 5_1:-61439781 Msa0741740:CDS
ACCTTGAAGATGGATATAGA+TGG 0.501904 5_1:-61439771 Msa0741740:CDS
CCAAAATTAGGGTGTGAAGA+TGG 0.502839 5_1:-61440368 Msa0741740:CDS
AGGTATACAGAACAAGTTAA+GGG 0.504936 5_1:+61438274 None:intergenic
TTTCAAATTTGTAAATGTGA+GGG 0.511380 5_1:-61438099 Msa0741740:three_prime_UTR
AAACTTGTACTATGAGAAGA+AGG 0.513903 5_1:+61440623 None:intergenic
GAGAGAAGAAAAGGTGAGTG+AGG 0.518848 5_1:+61440737 None:intergenic
AACCATAGTCACGACGAAGT+TGG 0.520777 5_1:+61438431 None:intergenic
TTCAAATTTGTAAATGTGAG+GGG 0.521783 5_1:-61438098 Msa0741740:three_prime_UTR
GATATACTACAGATTCAAAT+GGG 0.523306 5_1:+61438332 None:intergenic
TTGCTCCAATCCCATTGAAG+TGG 0.528723 5_1:+61438579 None:intergenic
GGAAAATTTGTGGATCACTT+TGG 0.533405 5_1:+61438512 None:intergenic
TGTTGTTGCTGTTGCTGATG+AGG 0.533557 5_1:+61438472 None:intergenic
TGACTACTTACATGGTTCCA+TGG 0.538187 5_1:-61440597 Msa0741740:CDS
GAGGAGTGTGTAAAAGTAGG+AGG 0.544818 5_1:-61440907 Msa0741740:five_prime_UTR
TTGAGTTCATCTTGATGGAA+AGG 0.547448 5_1:+61440689 None:intergenic
GTTTCAAATTTGTAAATGTG+AGG 0.552196 5_1:-61438100 Msa0741740:three_prime_UTR
ATTGTGATGACAACATATGA+AGG 0.558492 5_1:-61438685 Msa0741740:CDS
TATGATAGCTTCATTAGATG+AGG 0.562711 5_1:+61440424 None:intergenic
GGGGAGAATGATGGTTTGAA+AGG 0.563927 5_1:-61438079 Msa0741740:three_prime_UTR
ATCATGATTCTCATTAGCCA+TGG 0.579134 5_1:+61440712 None:intergenic
GAGACTTATCATCACTAGTA+GGG 0.580015 5_1:-61440478 Msa0741740:CDS
AACACAAAGAAATCTAGTGC+AGG 0.593942 5_1:-61440500 Msa0741740:CDS
GCGGATGATGATGATGCACT+TGG 0.605313 5_1:-61438205 Msa0741740:three_prime_UTR
TAAATGTGAGGGGAGAATGA+TGG 0.609963 5_1:-61438088 Msa0741740:three_prime_UTR
CACTGTCCAGCAACACTTAG+GGG 0.611634 5_1:-61438649 Msa0741740:CDS
TGAAGAACAAGACAAGTCAA+AGG 0.626003 5_1:+61440553 None:intergenic
TCAAGAATAGTCCGTACCCA+AGG 0.626808 5_1:-61439726 Msa0741740:intron
TTAAGAACTAATTATTACTG+CGG 0.630487 5_1:-61438224 Msa0741740:three_prime_UTR
GTGCATTGTGAAGAAAAGGG+TGG 0.634026 5_1:-61438731 Msa0741740:CDS
TAAGTGTTGCTGGACAGTGA+TGG 0.643871 5_1:+61438653 None:intergenic
GAAGTGCATTGTGAAGAAAA+GGG 0.651750 5_1:-61438734 Msa0741740:CDS
GAAGTGGAAGCAAATAGGGA+TGG 0.655945 5_1:+61438595 None:intergenic
TGGTGATGATGACAACAACA+TGG 0.706923 5_1:+61438615 None:intergenic
TTAGTCAAGAATGCAAACCG+TGG 0.731382 5_1:+61439808 None:intergenic
TGATGATGACAACAACATGG+AGG 0.818574 5_1:+61438618 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTACTAAATTTGAAAAT+TGG + chr5_1:61439243-61439262 None:intergenic 10.0%
!!! TAATTTTTTGTCAAAATTAA+GGG - chr5_1:61439257-61439276 Msa0741740:intron 10.0%
!! CTAACAAAAAAAAAATAAAT+TGG - chr5_1:61439752-61439771 Msa0741740:CDS 10.0%
!! AACAAAAAAAAAATAAATTG+GGG - chr5_1:61439754-61439773 Msa0741740:CDS 10.0%
!!! AGAATTTAAGTAATTTTTTA+GGG + chr5_1:61439789-61439808 None:intergenic 10.0%
!!! TAGAATTTAAGTAATTTTTT+AGG + chr5_1:61439790-61439809 None:intergenic 10.0%
!! AAAATTACTTAAATTCTAAT+TGG - chr5_1:61439792-61439811 Msa0741740:CDS 10.0%
!!! TTTTCATTGAATTACTATAA+TGG - chr5_1:61438805-61438824 Msa0741740:intron 15.0%
!!! GTAATTTTTTGTCAAAATTA+AGG - chr5_1:61439256-61439275 Msa0741740:intron 15.0%
!!! CTTTAAAATAAAATGATGAA+GGG - chr5_1:61439294-61439313 Msa0741740:intron 15.0%
!!! AATTTCGTACTTATAATTTT+AGG + chr5_1:61439726-61439745 None:intergenic 15.0%
!! AAATTATAAGTACGAAATTT+AGG - chr5_1:61439727-61439746 Msa0741740:CDS 15.0%
!! CATCACAATAAATTATAAAT+TGG + chr5_1:61439856-61439875 None:intergenic 15.0%
!!! AAAAAAGTTAGCTTTATTTC+TGG - chr5_1:61438152-61438171 Msa0741740:three_prime_UTR 20.0%
!! CAAAAAATCATGAAGAAAAA+GGG + chr5_1:61438650-61438669 None:intergenic 20.0%
!! TCAAAAAATCATGAAGAAAA+AGG + chr5_1:61438651-61438670 None:intergenic 20.0%
!!! ATGATTTTTTGATAGATCAA+TGG - chr5_1:61438659-61438678 Msa0741740:CDS 20.0%
!!! ATTTTTTGTTGTTTACTTTG+TGG - chr5_1:61438770-61438789 Msa0741740:intron 20.0%
!! TTGTGTATATATGACTAAAA+TGG - chr5_1:61438943-61438962 Msa0741740:intron 20.0%
!! TAAGAAATGTATGTACATTA+GGG + chr5_1:61438985-61439004 None:intergenic 20.0%
!! ATAAGAAATGTATGTACATT+AGG + chr5_1:61438986-61439005 None:intergenic 20.0%
!! ATTGGAAATAATTTAACCTT+GGG + chr5_1:61439225-61439244 None:intergenic 20.0%
!! AATTGGAAATAATTTAACCT+TGG + chr5_1:61439226-61439245 None:intergenic 20.0%
!!! CCTTCATCATTTTATTTTAA+AGG + chr5_1:61439296-61439315 None:intergenic 20.0%
!!! CCTTTAAAATAAAATGATGA+AGG - chr5_1:61439293-61439312 Msa0741740:intron 20.0%
!!! TAGTAATTTGTATCTACAAA+GGG + chr5_1:61439464-61439483 None:intergenic 20.0%
!!! ATAGTAATTTGTATCTACAA+AGG + chr5_1:61439465-61439484 None:intergenic 20.0%
!! ATTACTTAAATTCTAATTGG+AGG - chr5_1:61439795-61439814 Msa0741740:CDS 20.0%
!!! AATTTTCAAAGTGATTTTGA+CGG + chr5_1:61439923-61439942 None:intergenic 20.0%
!! TACTTTAGTATATAAGTTCA+AGG + chr5_1:61440571-61440590 None:intergenic 20.0%
!! CTATATAGAGACTTAATTTA+TGG + chr5_1:61440625-61440644 None:intergenic 20.0%
!! TTAAGAACTAATTATTACTG+CGG - chr5_1:61440708-61440727 Msa0741740:CDS 20.0%
!!! TTTTAACCATATATATAGCT+TGG - chr5_1:61440758-61440777 Msa0741740:five_prime_UTR 20.0%
!! TTTCAAATTTGTAAATGTGA+GGG - chr5_1:61440833-61440852 Msa0741740:five_prime_UTR 20.0%
!! AGCTATAAGACTTAATTTGA+TGG + chr5_1:61438116-61438135 None:intergenic 25.0%
!! TCATTTTCACAAAACTTTCA+AGG - chr5_1:61438279-61438298 Msa0741740:three_prime_UTR 25.0%
!!! ATTTTTTGATAGATCAATGG+AGG - chr5_1:61438662-61438681 Msa0741740:CDS 25.0%
!!! TTTTTTGATAGATCAATGGA+GGG - chr5_1:61438663-61438682 Msa0741740:CDS 25.0%
! ACACTGAAAATGTCATAATT+AGG + chr5_1:61438852-61438871 None:intergenic 25.0%
! TGTATATATGACTAAAATGG+TGG - chr5_1:61438946-61438965 Msa0741740:intron 25.0%
! TACATTTCTTATGATGAGTT+TGG - chr5_1:61438994-61439013 Msa0741740:intron 25.0%
! ATTGTTGTGAATTTGTCTAA+TGG - chr5_1:61439049-61439068 Msa0741740:intron 25.0%
! AAATAATTTAACCTTGGGTA+CGG + chr5_1:61439220-61439239 None:intergenic 25.0%
! TTCAAAATCTTAATTATGCG+AGG + chr5_1:61439429-61439448 None:intergenic 25.0%
! AAGTAAATGACTACTCTTTA+GGG - chr5_1:61439597-61439616 Msa0741740:intron 25.0%
! TTCGAGAACTAAAAAATCTT+TGG - chr5_1:61439625-61439644 Msa0741740:intron 25.0%
! TTACTTATTACCTTTCATCT+AGG - chr5_1:61439655-61439674 Msa0741740:intron 25.0%
! AAAATAAATTGGGGTTCATT+AGG - chr5_1:61439763-61439782 Msa0741740:CDS 25.0%
! TATGACATGAAATATGGAAT+AGG + chr5_1:61440104-61440123 None:intergenic 25.0%
! TTATGCTATGACATGAAATA+TGG + chr5_1:61440110-61440129 None:intergenic 25.0%
! TATGTATATGTATACAATGC+AGG - chr5_1:61440152-61440171 Msa0741740:intron 25.0%
! GATATACTACAGATTCAAAT+GGG + chr5_1:61440603-61440622 None:intergenic 25.0%
! TCTAATATGCATACAAATCT+AGG + chr5_1:61440681-61440700 None:intergenic 25.0%
! AATTCACCAAGCTATATATA+TGG + chr5_1:61440767-61440786 None:intergenic 25.0%
!! TATATATAGCTTGGTGAATT+TGG - chr5_1:61440767-61440786 Msa0741740:five_prime_UTR 25.0%
! CTAAATATAGACTGATCAAA+TGG + chr5_1:61440813-61440832 None:intergenic 25.0%
! GTTTCAAATTTGTAAATGTG+AGG - chr5_1:61440832-61440851 Msa0741740:five_prime_UTR 25.0%
! TTCAAATTTGTAAATGTGAG+GGG - chr5_1:61440834-61440853 Msa0741740:five_prime_UTR 25.0%
!! ATACTATGTTGATATTTTGC+AGG - chr5_1:61440885-61440904 Msa0741740:five_prime_UTR 25.0%
!! TACTATGTTGATATTTTGCA+GGG - chr5_1:61440886-61440905 Msa0741740:five_prime_UTR 25.0%
AAACTTGTACTATGAGAAGA+AGG + chr5_1:61438312-61438331 None:intergenic 30.0%
!! AGTTTTAGTGACTACTTACA+TGG - chr5_1:61438327-61438346 Msa0741740:three_prime_UTR 30.0%
TATGATAGCTTCATTAGATG+AGG + chr5_1:61438511-61438530 None:intergenic 30.0%
AAAGATAAGCAGCCAAAATT+AGG - chr5_1:61438552-61438571 Msa0741740:CDS 30.0%
AAGATAAGCAGCCAAAATTA+GGG - chr5_1:61438553-61438572 Msa0741740:CDS 30.0%
TGAAAAGTCTAAGAAAGAGT+AGG - chr5_1:61438593-61438612 Msa0741740:CDS 30.0%
CTTGTCTATATTAAGTACAG+TGG - chr5_1:61438897-61438916 Msa0741740:intron 30.0%
! TATGACTAAAATGGTGGAAA+AGG - chr5_1:61438952-61438971 Msa0741740:intron 30.0%
TGTGAATTTGTCTAATGGTT+TGG - chr5_1:61439054-61439073 Msa0741740:intron 30.0%
!!! CTAATGGTTTGGTGTATTTT+AGG - chr5_1:61439065-61439084 Msa0741740:intron 30.0%
!! TTTGGTGTATTTTAGGAACA+AGG - chr5_1:61439072-61439091 Msa0741740:intron 30.0%
GGCTAAAAAGAAAGAGAAAA+AGG - chr5_1:61439093-61439112 Msa0741740:intron 30.0%
GGATATAGATGGAGAAAATA+TGG - chr5_1:61439172-61439191 Msa0741740:intron 30.0%
TTTGTCAAAATTAAGGGTTG+TGG - chr5_1:61439263-61439282 Msa0741740:intron 30.0%
AATAAAATGATGAAGGGTTG+TGG - chr5_1:61439300-61439319 Msa0741740:intron 30.0%
CAAGTAAATGACTACTCTTT+AGG - chr5_1:61439596-61439615 Msa0741740:intron 30.0%
! TTATAATTTTAGGCCTAGGA+TGG + chr5_1:61439716-61439735 None:intergenic 30.0%
! GTACTTATAATTTTAGGCCT+AGG + chr5_1:61439720-61439739 None:intergenic 30.0%
TTAAATTCTAATTGGAGGTG+TGG - chr5_1:61439800-61439819 Msa0741740:CDS 30.0%
GAAATATGGAATAGGATTAG+AGG + chr5_1:61440096-61440115 None:intergenic 30.0%
TATGTTGTCATCACAATTGA+TGG + chr5_1:61440244-61440263 None:intergenic 30.0%
ATTGTGATGACAACATATGA+AGG - chr5_1:61440247-61440266 Msa0741740:intron 30.0%
GAAACTGAGAAAAGAAATCT+TGG + chr5_1:61440387-61440406 None:intergenic 30.0%
!! AGATTTTGGTGGAAAATTTG+TGG + chr5_1:61440433-61440452 None:intergenic 30.0%
GGATATACTACAGATTCAAA+TGG + chr5_1:61440604-61440623 None:intergenic 30.0%
AGGTATACAGAACAAGTTAA+GGG + chr5_1:61440661-61440680 None:intergenic 30.0%
TAGGTATACAGAACAAGTTA+AGG + chr5_1:61440662-61440681 None:intergenic 30.0%
TTGCAGGGAAATATATTGAT+AGG - chr5_1:61440901-61440920 Msa0741740:five_prime_UTR 30.0%
ATCATGATTCTCATTAGCCA+TGG + chr5_1:61438223-61438242 None:intergenic 35.0%
TTGAGTTCATCTTGATGGAA+AGG + chr5_1:61438246-61438265 None:intergenic 35.0%
AGTGATTGAGTTCATCTTGA+TGG + chr5_1:61438251-61438270 None:intergenic 35.0%
! CAAGTCAAAGGCTTTTGATA+GGG + chr5_1:61438370-61438389 None:intergenic 35.0%
! ACAAGTCAAAGGCTTTTGAT+AGG + chr5_1:61438371-61438390 None:intergenic 35.0%
TGAAGAACAAGACAAGTCAA+AGG + chr5_1:61438382-61438401 None:intergenic 35.0%
! CTTTGTGTTGTTGTCATCAA+TGG + chr5_1:61438421-61438440 None:intergenic 35.0%
AACACAAAGAAATCTAGTGC+AGG - chr5_1:61438432-61438451 Msa0741740:CDS 35.0%
GAGACTTATCATCACTAGTA+GGG - chr5_1:61438454-61438473 Msa0741740:CDS 35.0%
!! GAGGATGATTCTGAAGATTT+TGG + chr5_1:61438492-61438511 None:intergenic 35.0%
!!! TGGCTGCTTATCTTTTTTGT+TGG + chr5_1:61438547-61438566 None:intergenic 35.0%
ATCATGAAGAAAAAGGGACA+AGG + chr5_1:61438644-61438663 None:intergenic 35.0%
CCTAGCTACTCATGAATTAA+AGG + chr5_1:61438743-61438762 None:intergenic 35.0%
CCTTTAATTCATGAGTAGCT+AGG - chr5_1:61438740-61438759 Msa0741740:CDS 35.0%
AGAAAAAGGTAAAAGAGCCA+CGG - chr5_1:61439107-61439126 Msa0741740:intron 35.0%
ACCTTGAAGATGGATATAGA+TGG - chr5_1:61439161-61439180 Msa0741740:intron 35.0%
TCCATCTATATCCATCTTCA+AGG + chr5_1:61439165-61439184 None:intergenic 35.0%
TATTACCTTTCATCTAGGTC+AGG - chr5_1:61439660-61439679 Msa0741740:intron 35.0%
ATTACCTTTCATCTAGGTCA+GGG - chr5_1:61439661-61439680 Msa0741740:intron 35.0%
!! TGATTTTGACGGAAGAGTTT+GGG + chr5_1:61439912-61439931 None:intergenic 35.0%
TCACTTCTCTTGAAAATCTG+AGG - chr5_1:61440007-61440026 Msa0741740:intron 35.0%
! AGAAGTGCATTGTGAAGAAA+AGG - chr5_1:61440197-61440216 Msa0741740:intron 35.0%
GAAGTGCATTGTGAAGAAAA+GGG - chr5_1:61440198-61440217 Msa0741740:intron 35.0%
! TCATCACAATTGATGGATCT+TGG + chr5_1:61440237-61440256 None:intergenic 35.0%
CATTGAAGTGGAAGCAAATA+GGG + chr5_1:61440344-61440363 None:intergenic 35.0%
CTATTTGCTTCCACTTCAAT+GGG - chr5_1:61440343-61440362 Msa0741740:intron 35.0%
GGAAAATTTGTGGATCACTT+TGG + chr5_1:61440423-61440442 None:intergenic 35.0%
TTACTACCATCATCATTTCC+TGG - chr5_1:61440535-61440554 Msa0741740:CDS 35.0%
! TGTTTTCCAGGAAATGATGA+TGG + chr5_1:61440544-61440563 None:intergenic 35.0%
GAGGAGAGAAGGTTGAATTA+TGG + chr5_1:61438179-61438198 None:intergenic 40.0%
! ACCTTTTCTTCTCTCTTCCA+TGG - chr5_1:61438203-61438222 Msa0741740:three_prime_UTR 40.0%
TGACTACTTACATGGTTCCA+TGG - chr5_1:61438335-61438354 Msa0741740:three_prime_UTR 40.0%
GGAGACTTATCATCACTAGT+AGG - chr5_1:61438453-61438472 Msa0741740:CDS 40.0%
! CCATCTTCACACCCTAATTT+TGG + chr5_1:61438567-61438586 None:intergenic 40.0%
CCAAAATTAGGGTGTGAAGA+TGG - chr5_1:61438564-61438583 Msa0741740:CDS 40.0%
TAGATCAATGGAGGGTAAGA+AGG - chr5_1:61438671-61438690 Msa0741740:CDS 40.0%
AAGTACAGTGGTGTGAATGT+AGG - chr5_1:61438909-61438928 Msa0741740:intron 40.0%
TTAGTCAAGAATGCAAACCG+TGG + chr5_1:61439127-61439146 None:intergenic 40.0%
GAGATTGATCACCTTGAAGA+TGG - chr5_1:61439151-61439170 Msa0741740:intron 40.0%
! GAAGAGTTTGGGATGATGAA+AGG + chr5_1:61439901-61439920 None:intergenic 40.0%
!! GTGATTTTGACGGAAGAGTT+TGG + chr5_1:61439913-61439932 None:intergenic 40.0%
TCAAATTGTAGATCAGCCCT+AGG - chr5_1:61439947-61439966 Msa0741740:intron 40.0%
TCTGAGAATTTAGTGGCCTA+GGG + chr5_1:61439966-61439985 None:intergenic 40.0%
! TTCTGAGAATTTAGTGGCCT+AGG + chr5_1:61439967-61439986 None:intergenic 40.0%
! GGACGTTTCTGAGAATTTAG+TGG + chr5_1:61439973-61439992 None:intergenic 40.0%
GAAGTGAGAAACCTAGATCA+GGG + chr5_1:61439994-61440013 None:intergenic 40.0%
AGAAGTGAGAAACCTAGATC+AGG + chr5_1:61439995-61440014 None:intergenic 40.0%
! TGATGATGACAACAACATGG+AGG + chr5_1:61440317-61440336 None:intergenic 40.0%
! TGGTGATGATGACAACAACA+TGG + chr5_1:61440320-61440339 None:intergenic 40.0%
CCATTGAAGTGGAAGCAAAT+AGG + chr5_1:61440345-61440364 None:intergenic 40.0%
CCTATTTGCTTCCACTTCAA+TGG - chr5_1:61440342-61440361 Msa0741740:intron 40.0%
GGATCACTTTGGCTATAAGT+TGG + chr5_1:61440412-61440431 None:intergenic 40.0%
! GATGAGGTTGTGGAAGATTT+TGG + chr5_1:61440447-61440466 None:intergenic 40.0%
TAAATGTGAGGGGAGAATGA+TGG - chr5_1:61440844-61440863 Msa0741740:five_prime_UTR 40.0%
! GAGGAGTGTGTAAAAGTAGG+AGG - chr5_1:61438025-61438044 Msa0741740:three_prime_UTR 45.0%
AAAAGGTGAGTGAGGAGAGA+AGG + chr5_1:61438190-61438209 None:intergenic 45.0%
GAGAGAAGAAAAGGTGAGTG+AGG + chr5_1:61438198-61438217 None:intergenic 45.0%
GCCATGGAAGAGAGAAGAAA+AGG + chr5_1:61438207-61438226 None:intergenic 45.0%
!! TGATAGGGTGTTGTAGTCCA+TGG + chr5_1:61438355-61438374 None:intergenic 45.0%
AGGGACAAGGAAAGAAGAAG+AGG + chr5_1:61438631-61438650 None:intergenic 45.0%
TCAAGAATAGTCCGTACCCA+AGG - chr5_1:61439206-61439225 Msa0741740:intron 45.0%
ATGTCCCTGACCTAGATGAA+AGG + chr5_1:61439668-61439687 None:intergenic 45.0%
! TCAGGGACATATCTGAGACA+GGG - chr5_1:61439678-61439697 Msa0741740:intron 45.0%
! GTTTGGGATGATGAAAGGCT+AGG + chr5_1:61439896-61439915 None:intergenic 45.0%
GTGCATTGTGAAGAAAAGGG+TGG - chr5_1:61440201-61440220 Msa0741740:intron 45.0%
! TAAGTGTTGCTGGACAGTGA+TGG + chr5_1:61440282-61440301 None:intergenic 45.0%
ATCACTGTCCAGCAACACTT+AGG - chr5_1:61440281-61440300 Msa0741740:intron 45.0%
TCACTGTCCAGCAACACTTA+GGG - chr5_1:61440282-61440301 Msa0741740:intron 45.0%
GAAGTGGAAGCAAATAGGGA+TGG + chr5_1:61440340-61440359 None:intergenic 45.0%
TGCTTCCACTTCAATGGGAT+TGG - chr5_1:61440348-61440367 Msa0741740:CDS 45.0%
TTGCTCCAATCCCATTGAAG+TGG + chr5_1:61440356-61440375 None:intergenic 45.0%
! GAGGTTGTGGAAGATTTTGG+TGG + chr5_1:61440444-61440463 None:intergenic 45.0%
! TGTTGTTGCTGTTGCTGATG+AGG + chr5_1:61440463-61440482 None:intergenic 45.0%
TTCCAACTTCGTCGTGACTA+TGG - chr5_1:61440499-61440518 Msa0741740:CDS 45.0%
AACCATAGTCACGACGAAGT+TGG + chr5_1:61440504-61440523 None:intergenic 45.0%
!!! GTTCAAGGCTCTTGTTTTCC+AGG + chr5_1:61440556-61440575 None:intergenic 45.0%
GGGGAGAATGATGGTTTGAA+AGG - chr5_1:61440853-61440872 Msa0741740:five_prime_UTR 45.0%
!! TAACAAAAAAAAAATAAATT+GGG - chr5_1:61439753-61439772 Msa0741740:CDS 5.0%
! GTCAGGGACATATCTGAGAC+AGG - chr5_1:61439677-61439696 Msa0741740:intron 50.0%
! GACATATCTGAGACAGGGTG+AGG - chr5_1:61439683-61439702 Msa0741740:intron 50.0%
! ATATCTGAGACAGGGTGAGG+AGG - chr5_1:61439686-61439705 Msa0741740:intron 50.0%
! TATCTGAGACAGGGTGAGGA+GGG - chr5_1:61439687-61439706 Msa0741740:intron 50.0%
CTCAGAAACGTCCCTGATCT+AGG - chr5_1:61439980-61439999 Msa0741740:intron 50.0%
CACTGTCCAGCAACACTTAG+GGG - chr5_1:61440283-61440302 Msa0741740:intron 50.0%
! GCATTACCCCTAAGTGTTGC+TGG + chr5_1:61440292-61440311 None:intergenic 50.0%
TGCTGTTGCTGATGAGGTTG+TGG + chr5_1:61440457-61440476 None:intergenic 50.0%
! GCGGATGATGATGATGCACT+TGG - chr5_1:61440727-61440746 Msa0741740:exon 50.0%
CTGAGACAGGGTGAGGAGGG+TGG - chr5_1:61439690-61439709 Msa0741740:intron 65.0%
GTGAGGAGGGTGGCCATCCT+AGG - chr5_1:61439700-61439719 Msa0741740:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 61438025 61440929 61438025 ID=Msa0741740;Name=Msa0741740
chr5_1 mRNA 61438025 61440929 61438025 ID=Msa0741740-mRNA-1;Parent=Msa0741740;Name=Msa0741740-mRNA-1;_AED=0.02;_eAED=0.02;_QI=197|1|1|1|1|1|3|356|309
chr5_1 exon 61438025 61438780 61438025 ID=Msa0741740-mRNA-1:exon:17803;Parent=Msa0741740-mRNA-1
chr5_1 exon 61439727 61439867 61439727 ID=Msa0741740-mRNA-1:exon:17802;Parent=Msa0741740-mRNA-1
chr5_1 exon 61440344 61440929 61440344 ID=Msa0741740-mRNA-1:exon:17801;Parent=Msa0741740-mRNA-1
chr5_1 five_prime_UTR 61440733 61440929 61440733 ID=Msa0741740-mRNA-1:five_prime_utr;Parent=Msa0741740-mRNA-1
chr5_1 CDS 61440344 61440732 61440344 ID=Msa0741740-mRNA-1:cds;Parent=Msa0741740-mRNA-1
chr5_1 CDS 61439727 61439867 61439727 ID=Msa0741740-mRNA-1:cds;Parent=Msa0741740-mRNA-1
chr5_1 CDS 61438381 61438780 61438381 ID=Msa0741740-mRNA-1:cds;Parent=Msa0741740-mRNA-1
chr5_1 three_prime_UTR 61438025 61438380 61438025 ID=Msa0741740-mRNA-1:three_prime_utr;Parent=Msa0741740-mRNA-1
Gene Sequence

>Msa0741740

ATGGCTAATGAGAATCATGATCCTTTCCATCAAGATGAACTCAATCACTCTAACTTTTCATTTTCACAAAACTTTCAAGGATTTGATCCTTCTTCTCATAGTACAAGTTTTAGTGACTACTTACATGGTTCCATGGACTACAACACCCTATCAAAAGCCTTTGACTTGTCTTGTTCTTCATCTGAAGTGATTTCTTCCATTGATGACAACAACACAAAGAAATCTAGTGCAGGAGACTTATCATCACTAGTAGGGATTAGTGAGACACCAAAATCTTCAGAATCATCCTCATCTAATGAAGCTATCATAGAAGAAAACTCAACCAACAAAAAAGATAAGCAGCCAAAATTAGGGTGTGAAGATGGAGATGATGAAAAGTCTAAGAAAGAGAACAAGGCTAAAAAGAAAGAGAAAAAGGTAAAAGAGCCACGGTTTGCATTCTTGACTAAAAGTGAGATTGATCACCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAAGCAGTCAAGAATAGTCCGTACCCAAGGAGCTATTATAGATGCACAAGTCAGAAGTGCATTGTGAAGAAAAGGGTGGAGAGATCATACCAAGATCCATCAATTGTGATGACAACATATGAAGGACAACACAACCATCACTGTCCAGCAACACTTAGGGGTAATGCTTCCTCCATGTTGTTGTCATCATCACCATCCCTATTTGCTTCCACTTCAATGGGATTGGAGCAAAGATTACACCAAGATTTCTTTTCTCAGTTTCTTCCAACTTATAGCCAAAGTGATCCACAAATTTTCCACCAAAATCTTCCACAACCTCATCAGCAACAGCAACAACAACATCAGCAGCAGCAGTTCCAACTTCGTCGTGACTATGGTTTGTTGCAAGATTTACTACCATCATCATTTCCTGGAAAACAAGAGCCTTGA
Protein sequence

>Msa0741740

MANENHDPFHQDELNHSNFSFSQNFQGFDPSSHSTSFSDYLHGSMDYNTLSKAFDLSCSSSEVISSIDDNNTKKSSAGDLSSLVGISETPKSSESSSSNEAIIEENSTNKKDKQPKLGCEDGDDEKSKKENKAKKKEKKVKEPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCIVKKRVERSYQDPSIVMTTYEGQHNHHCPATLRGNASSMLLSSSPSLFASTSMGLEQRLHQDFFSQFLPTYSQSDPQIFHQNLPQPHQQQQQQHQQQQFQLRRDYGLLQDLLPSSFPGKQEP*