Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125640 | sp|Q9FSF0|MDH_TOBAC | 92.771 | 332 | 24 | 0 | 1 | 332 | 1 | 332 | 0.0 | 619 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125640 | A0A072VMC4 | 99.699 | 332 | 1 | 0 | 1 | 332 | 1 | 332 | 0.0 | 681 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007440 | Msa0125640 | -0.813000 | 3.194491e-51 | -8.615850e-47 |
| Msa0030150 | Msa0125640 | 0.975056 | 2.935180e-139 | -8.615850e-47 |
| Msa0042980 | Msa0125640 | 0.862561 | 4.646508e-64 | -8.615850e-47 |
| Msa0044540 | Msa0125640 | 0.804437 | 2.161653e-49 | -8.615850e-47 |
| Msa0063350 | Msa0125640 | 0.827417 | 1.583028e-54 | -8.615850e-47 |
| Msa0109590 | Msa0125640 | -0.814220 | 1.720948e-51 | -8.615850e-47 |
| Msa0125640 | Msa0136890 | 0.875255 | 3.560152e-68 | -8.615850e-47 |
| Msa0125640 | Msa0137710 | 0.826380 | 2.800348e-54 | -8.615850e-47 |
| Msa0125640 | Msa0170110 | 0.889806 | 1.740780e-73 | -8.615850e-47 |
| Msa0125640 | Msa0178860 | 0.815555 | 8.706327e-52 | -8.615850e-47 |
| Msa0125640 | Msa0210510 | 0.811220 | 7.806777e-51 | -8.615850e-47 |
| Msa0125640 | Msa0268090 | -0.809066 | 2.273221e-50 | -8.615850e-47 |
| Msa0125640 | Msa0272450 | -0.805942 | 1.046415e-49 | -8.615850e-47 |
| Msa0125640 | Msa0347610 | -0.824769 | 6.744430e-54 | -8.615850e-47 |
| Msa0125640 | Msa0389610 | 0.847011 | 1.514158e-59 | -8.615850e-47 |
| Msa0125640 | Msa0394340 | -0.810328 | 1.217234e-50 | -8.615850e-47 |
| Msa0125640 | Msa0412840 | -0.838399 | 2.942942e-57 | -8.615850e-47 |
| Msa0125640 | Msa0457510 | -0.861136 | 1.268033e-63 | -8.615850e-47 |
| Msa0125640 | Msa0460400 | 0.810273 | 1.251206e-50 | -8.615850e-47 |
| Msa0125640 | Msa0472960 | 0.824520 | 7.721319e-54 | -8.615850e-47 |
| Msa0125640 | Msa0473730 | 0.828312 | 9.641447e-55 | -8.615850e-47 |
| Msa0125640 | Msa0482190 | 0.801268 | 9.756461e-49 | -8.615850e-47 |
| Msa0125640 | Msa0489610 | -0.806119 | 9.601629e-50 | -8.615850e-47 |
| Msa0125640 | Msa0504450 | -0.801194 | 1.010281e-48 | -8.615850e-47 |
| Msa0125640 | Msa0517760 | 0.821336 | 4.262536e-53 | -8.615850e-47 |
| Msa0125640 | Msa0517830 | 0.814913 | 1.209384e-51 | -8.615850e-47 |
| Msa0125640 | Msa0528020 | 0.805498 | 1.296585e-49 | -8.615850e-47 |
| Msa0125640 | Msa0528610 | 0.831496 | 1.615268e-55 | -8.615850e-47 |
| Msa0125640 | Msa0561130 | 0.831759 | 1.391143e-55 | -8.615850e-47 |
| Msa0125640 | Msa0610130 | -0.813664 | 2.282402e-51 | -8.615850e-47 |
| Msa0125640 | Msa0799330 | -0.807758 | 4.323150e-50 | -8.615850e-47 |
| Msa0125640 | Msa0825240 | 0.804493 | 2.103636e-49 | -8.615850e-47 |
| Msa0125640 | Msa0827350 | 0.804074 | 2.572243e-49 | -8.615850e-47 |
| Msa0125640 | Msa0864470 | 0.824014 | 1.015355e-53 | -8.615850e-47 |
| Msa0125640 | Msa0942550 | 0.816172 | 6.341282e-52 | -8.615850e-47 |
| Msa0125640 | Msa0942560 | 0.806496 | 7.998238e-50 | -8.615850e-47 |
| Msa0125640 | Msa0946280 | 0.830208 | 3.343244e-55 | -8.615850e-47 |
| Msa0125640 | Msa0946690 | 0.818945 | 1.503790e-52 | -8.615850e-47 |
| Msa0125640 | Msa0984220 | 0.828103 | 1.082758e-54 | -8.615850e-47 |
| Msa0125640 | Msa1029080 | 0.840900 | 6.579147e-58 | -8.615850e-47 |
| Msa0125640 | Msa1079730 | 0.841208 | 5.462480e-58 | -8.615850e-47 |
| Msa0125640 | Msa1124540 | 0.844031 | 9.721102e-59 | -8.615850e-47 |
| Msa0125640 | Msa1156170 | 0.842099 | 3.179009e-58 | -8.615850e-47 |
| Msa0125640 | Msa1168040 | 0.850195 | 1.986416e-60 | -8.615850e-47 |
| Msa0125640 | Msa1174870 | -0.805762 | 1.141509e-49 | -8.615850e-47 |
| Msa0125640 | Msa1183100 | 0.824828 | 6.531106e-54 | -8.615850e-47 |
| Msa0125640 | Msa1191050 | 0.829240 | 5.749108e-55 | -8.615850e-47 |
| Msa0125640 | Msa1207470 | 0.834339 | 3.174470e-56 | -8.615850e-47 |
| Msa0125640 | Msa1208650 | 0.828043 | 1.119668e-54 | -8.615850e-47 |
| Msa0125640 | Msa1234730 | -0.816977 | 4.186370e-52 | -8.615850e-47 |
| Msa0125640 | Msa1244720 | 0.816024 | 6.845019e-52 | -8.615850e-47 |
| Msa0125640 | Msa1257800 | 0.820089 | 8.245653e-53 | -8.615850e-47 |
| Msa0125640 | Msa1258380 | 0.801128 | 1.042065e-48 | -8.615850e-47 |
| Msa0125640 | Msa1315110 | -0.825062 | 5.753438e-54 | -8.615850e-47 |
| Msa0125640 | Msa1325860 | 0.817980 | 2.489073e-52 | -8.615850e-47 |
| Msa0125640 | Msa1364330 | 0.859563 | 3.793348e-63 | -8.615850e-47 |
| Msa0125640 | Msa1403340 | -0.851233 | 1.014174e-60 | -8.615850e-47 |
| Msa0125640 | Msa1404240 | 0.808510 | 2.989931e-50 | -8.615850e-47 |
| Msa0125640 | Msa1406110 | 0.806211 | 9.183067e-50 | -8.615850e-47 |
| Msa0125640 | Msa1444250 | 0.812026 | 5.214496e-51 | -8.615850e-47 |
| Msa0125640 | Msa1459760 | 0.815288 | 9.982358e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125640 | MtrunA17_Chr1g0187751 | 99.699 | 332 | 1 | 0 | 1 | 332 | 1 | 332 | 0.0 | 681 |
| Msa0125640 | MtrunA17_Chr1g0167651 | 93.675 | 332 | 21 | 0 | 1 | 332 | 1 | 332 | 0.0 | 623 |
| Msa0125640 | MtrunA17_Chr8g0334691 | 84.091 | 308 | 49 | 0 | 24 | 331 | 1 | 308 | 0.0 | 522 |
| Msa0125640 | MtrunA17_Chr1g0197371 | 39.818 | 329 | 191 | 4 | 3 | 328 | 92 | 416 | 4.64e-74 | 234 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125640 | AT1G04410.1 | 90.060 | 332 | 33 | 0 | 1 | 332 | 1 | 332 | 0.0 | 605 |
| Msa0125640 | AT5G43330.1 | 89.458 | 332 | 35 | 0 | 1 | 332 | 1 | 332 | 0.0 | 597 |
| Msa0125640 | AT5G56720.1 | 72.590 | 332 | 91 | 0 | 1 | 332 | 40 | 371 | 0.0 | 510 |
| Msa0125640 | AT5G58330.2 | 41.641 | 329 | 185 | 4 | 3 | 328 | 96 | 420 | 5.39e-79 | 248 |
| Msa0125640 | AT5G58330.1 | 41.641 | 329 | 185 | 4 | 3 | 328 | 97 | 421 | 6.03e-79 | 248 |
| Msa0125640 | AT5G58330.3 | 41.587 | 315 | 177 | 4 | 17 | 328 | 2 | 312 | 5.19e-76 | 237 |
Find 121 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCCACTTATTCACTTAA+AGG | 0.174972 | 1_3:-54182211 | None:intergenic |
| TTTGAAAAGTTTATGTCTTC+TGG | 0.178098 | 1_3:+54182104 | Msa0125640:three_prime_UTR |
| GCTGCATTCCCTCTTCTTAA+AGG | 0.234412 | 1_3:+54179866 | Msa0125640:CDS |
| TGGAGGATCACGGGCTGGTC+AGG | 0.252087 | 1_3:-54179782 | None:intergenic |
| CAAGTGATGATTTGCATAAA+AGG | 0.260404 | 1_3:-54182004 | None:intergenic |
| ATCACTGAACGGTGTTAAAA+TGG | 0.283888 | 1_3:+54179832 | Msa0125640:CDS |
| TGACAAGATTGGACCATAAC+AGG | 0.286946 | 1_3:+54180969 | Msa0125640:CDS |
| CACATTAGAGATTGGGTTCT+AGG | 0.308508 | 1_3:+54181378 | Msa0125640:CDS |
| CATTTCTTGTTTGACAAGAT+TGG | 0.308718 | 1_3:+54180958 | Msa0125640:CDS |
| ATCAAGGCATTGGTGTTTGC+CGG | 0.326996 | 1_3:-54180899 | None:intergenic |
| TGCAATATCATCAGGGAACC+TGG | 0.363492 | 1_3:+54181492 | Msa0125640:intron |
| TGGAGTCAATATTGCTGTTA+TGG | 0.370670 | 1_3:+54180058 | Msa0125640:CDS |
| CTCTTGTCCCTATGATTGCC+AGG | 0.371373 | 1_3:+54179744 | Msa0125640:CDS |
| TTTCCTTGTGTATTTGTCAA+TGG | 0.378788 | 1_3:+54181903 | Msa0125640:three_prime_UTR |
| ACAGTTGCGTGGTTGACATC+AGG | 0.383245 | 1_3:-54181082 | None:intergenic |
| CATAGCTACCGTTCAACAAC+GGG | 0.386475 | 1_3:+54181290 | Msa0125640:CDS |
| TTTGACCCAGAGCCCTGTTA+TGG | 0.392891 | 1_3:-54180982 | None:intergenic |
| ATCACTCCCCTGGCAATCAT+AGG | 0.399565 | 1_3:-54179752 | None:intergenic |
| GCTTTCTGAGGAGAAGGCTT+TGG | 0.399799 | 1_3:+54181852 | Msa0125640:CDS |
| CTTGTGACCACATTAGAGAT+TGG | 0.400822 | 1_3:+54181370 | Msa0125640:CDS |
| AACATTTATCAATAAAATAG+TGG | 0.405533 | 1_3:-54182309 | None:intergenic |
| AAGTGAATAAGTGGGAAATT+CGG | 0.409072 | 1_3:+54182216 | Msa0125640:three_prime_UTR |
| CACCAATGCCTTGATCTTGA+AGG | 0.415103 | 1_3:+54180907 | Msa0125640:CDS |
| TTTAACACCGTTCAGTGATT+CGG | 0.419237 | 1_3:-54179828 | None:intergenic |
| CACTCCTTTAAGTGAATAAG+TGG | 0.421061 | 1_3:+54182207 | Msa0125640:three_prime_UTR |
| GGCATTGGTGTTTGCCGGGT+TGG | 0.424208 | 1_3:-54180894 | None:intergenic |
| GCGTGAAACGACACCGCTTT+CGG | 0.431818 | 1_3:-54178846 | None:intergenic |
| GAGCATATGTCATTTGAGTC+AGG | 0.431913 | 1_3:+54182068 | Msa0125640:three_prime_UTR |
| CCTGTTCGTGTTCTTGTCAC+TGG | 0.433814 | 1_3:+54179026 | Msa0125640:CDS |
| CCAGTGACAAGAACACGAAC+AGG | 0.438629 | 1_3:-54179026 | None:intergenic |
| TTGTGACCACATTAGAGATT+GGG | 0.444343 | 1_3:+54181371 | Msa0125640:CDS |
| ACTATTTGTCTATTTATTCA+CGG | 0.445259 | 1_3:-54178899 | None:intergenic |
| CCGTTCAGTGATTCGGCTGC+TGG | 0.450461 | 1_3:-54179821 | None:intergenic |
| TCGCCATTGCGAGTTGTGAC+AGG | 0.451805 | 1_3:-54181578 | None:intergenic |
| TTTCTCAAGAGCAGAAGCTT+GGG | 0.453532 | 1_3:-54180153 | None:intergenic |
| GGAGTGAATTTATAGCCAAC+AGG | 0.454153 | 1_3:-54182190 | None:intergenic |
| GTTTCTCAAGAGCAGAAGCT+TGG | 0.456679 | 1_3:-54180154 | None:intergenic |
| ATTGGACCATAACAGGGCTC+TGG | 0.463189 | 1_3:+54180976 | Msa0125640:CDS |
| AGAGAATATTCTATCTTGCT+TGG | 0.464290 | 1_3:+54178764 | Msa0125640:five_prime_UTR |
| AATACGGAGCATAACTTAGT+TGG | 0.470056 | 1_3:-54182276 | None:intergenic |
| TTCAGTGATTCGGCTGCTGG+TGG | 0.473142 | 1_3:-54179818 | None:intergenic |
| AGATATTGAGAAACTCTTGA+TGG | 0.476838 | 1_3:+54181972 | Msa0125640:three_prime_UTR |
| AATATTGCTGTTATGGTTGG+TGG | 0.480289 | 1_3:+54180065 | Msa0125640:CDS |
| GTCAATATTGCTGTTATGGT+TGG | 0.483183 | 1_3:+54180062 | Msa0125640:CDS |
| TAGTGGTAAAATATCAAATA+CGG | 0.485896 | 1_3:-54182292 | None:intergenic |
| GGAGGATCACGGGCTGGTCA+GGG | 0.487190 | 1_3:-54179781 | None:intergenic |
| AACTCGTGGCTGATGATGCC+TGG | 0.490237 | 1_3:+54181137 | Msa0125640:CDS |
| GTTCTTGTCACTGGTGCTGC+AGG | 0.494198 | 1_3:+54179035 | Msa0125640:CDS |
| GGCGAATGGCAAATAGTTCA+AGG | 0.495465 | 1_3:+54181596 | Msa0125640:CDS |
| TTCCTTCAAGATCAAGGCAT+TGG | 0.495936 | 1_3:-54180909 | None:intergenic |
| TAGTAGTAGCTTTGTATATG+TGG | 0.498784 | 1_3:+54178716 | None:intergenic |
| TGCTACAACTGATGTGGTTG+AGG | 0.500221 | 1_3:+54180028 | Msa0125640:CDS |
| AGGGCCGAGCATCACTCCCC+TGG | 0.504498 | 1_3:-54179762 | None:intergenic |
| TTCATGAGTAGGAGTAGCAT+TGG | 0.507726 | 1_3:+54178871 | Msa0125640:five_prime_UTR |
| GGTTCTCGTTGTTGCCAACC+CGG | 0.510041 | 1_3:+54180880 | Msa0125640:intron |
| CCTTGTGTATTTGTCAATGG+AGG | 0.510190 | 1_3:+54181906 | Msa0125640:three_prime_UTR |
| AGAAGAGCTTTCTGAGGAGA+AGG | 0.511032 | 1_3:+54181846 | Msa0125640:CDS |
| TCAAGGCATTGGTGTTTGCC+GGG | 0.513479 | 1_3:-54180898 | None:intergenic |
| AGCGAATTCCTTCAAGATCA+AGG | 0.519920 | 1_3:-54180915 | None:intergenic |
| TCAGGGAACCTGGGTATCGA+TGG | 0.524300 | 1_3:+54181502 | Msa0125640:intron |
| GGTGGATTCCCTAGAAAAGA+AGG | 0.528773 | 1_3:+54180083 | Msa0125640:CDS |
| CGGTGTTAAAATGGAGTTGG+TGG | 0.529018 | 1_3:+54179841 | Msa0125640:CDS |
| GTTTCACGCCTTTCATGAGT+AGG | 0.532258 | 1_3:+54178860 | Msa0125640:five_prime_UTR |
| TCAAGCATGTGGAGGATCAC+GGG | 0.532929 | 1_3:-54179791 | None:intergenic |
| CGCCATTGCGAGTTGTGACA+GGG | 0.533982 | 1_3:-54181577 | None:intergenic |
| AATTGAGAATTGACAAACAA+TGG | 0.536893 | 1_3:-54181931 | None:intergenic |
| ATTCCCTAGAAAAGAAGGTA+TGG | 0.539427 | 1_3:+54180088 | Msa0125640:CDS |
| TCGATGGGAGTTTATTCTGA+TGG | 0.539461 | 1_3:+54181518 | Msa0125640:CDS |
| GTCAAGCATGTGGAGGATCA+CGG | 0.540541 | 1_3:-54179792 | None:intergenic |
| GGAGCATAACTTAGTTGGTA+AGG | 0.543782 | 1_3:-54182271 | None:intergenic |
| ATATTCTATCTTGCTTGGCA+TGG | 0.544371 | 1_3:+54178769 | Msa0125640:five_prime_UTR |
| TAGCTTTGTATATGTGGATG+AGG | 0.544967 | 1_3:+54178722 | None:intergenic |
| CAGTTGCGTGGTTGACATCA+GGG | 0.549966 | 1_3:-54181081 | None:intergenic |
| AACTCAAACCTTTAAGAAGA+GGG | 0.552886 | 1_3:-54179874 | None:intergenic |
| TCACTCCCCTGGCAATCATA+GGG | 0.553376 | 1_3:-54179751 | None:intergenic |
| TTGGACCATAACAGGGCTCT+GGG | 0.556375 | 1_3:+54180977 | Msa0125640:CDS |
| TGCAGCACCCCGTTGTTGAA+CGG | 0.559451 | 1_3:-54181298 | None:intergenic |
| GGAGATTGCTGATAAATAAG+TGG | 0.560772 | 1_3:-54178794 | None:intergenic |
| GGATCTTACAATGTACCCGC+TGG | 0.562224 | 1_3:+54181539 | Msa0125640:CDS |
| GACAGCAGAAGAGCTTTCTG+AGG | 0.563983 | 1_3:+54181840 | Msa0125640:CDS |
| TCACAACTCGCAATGGCGAA+TGG | 0.564475 | 1_3:+54181582 | Msa0125640:CDS |
| TTCCCTGTCACAACTCGCAA+TGG | 0.566100 | 1_3:+54181575 | Msa0125640:CDS |
| GTGGTCACAAGCAGCGCTCG+CGG | 0.568937 | 1_3:-54181358 | None:intergenic |
| ATTGCCAGGGGAGTGATGCT+CGG | 0.570606 | 1_3:+54179758 | Msa0125640:CDS |
| CATCATCAGCCACGAGTTCA+CGG | 0.570980 | 1_3:-54181132 | None:intergenic |
| AAACTCAAACCTTTAAGAAG+AGG | 0.571371 | 1_3:-54179875 | None:intergenic |
| TCTTGTCCCTATGATTGCCA+GGG | 0.574263 | 1_3:+54179745 | Msa0125640:CDS |
| GCATGTGGAGGATCACGGGC+TGG | 0.580601 | 1_3:-54179787 | None:intergenic |
| TCAGTGATTCGGCTGCTGGT+GGG | 0.585206 | 1_3:-54179817 | None:intergenic |
| GATGTGGTTGAGGGATGCAC+TGG | 0.588132 | 1_3:+54180038 | Msa0125640:CDS |
| CAGGGAACCTGGGTATCGAT+GGG | 0.588520 | 1_3:+54181503 | Msa0125640:intron |
| AATGAATAGATTAGTCCAGC+GGG | 0.591914 | 1_3:-54181554 | None:intergenic |
| GCTACAACTGATGTGGTTGA+GGG | 0.594490 | 1_3:+54180029 | Msa0125640:CDS |
| GACATTACAATATGAGAGGA+CGG | 0.595822 | 1_3:-54182249 | None:intergenic |
| GACAAGATTGGACCATAACA+GGG | 0.599626 | 1_3:+54180970 | Msa0125640:CDS |
| ATGCTACTCCTACTCATGAA+AGG | 0.602446 | 1_3:-54178868 | None:intergenic |
| ATTGAGAAACTCTTGATGGA+TGG | 0.603828 | 1_3:+54181976 | Msa0125640:three_prime_UTR |
| ATAAACTCCCATCGATACCC+AGG | 0.604419 | 1_3:-54181510 | None:intergenic |
| CTGGTGGGATGTCAAGCATG+TGG | 0.608538 | 1_3:-54179802 | None:intergenic |
| CAGGGTACTGACTTGATGAA+TGG | 0.610269 | 1_3:-54181063 | None:intergenic |
| CTAGAACCCAATCTCTAATG+TGG | 0.612432 | 1_3:-54181377 | None:intergenic |
| TGTTGTTGCTACAACTGATG+TGG | 0.615089 | 1_3:+54180022 | Msa0125640:CDS |
| TCAGCCACGAGTTCACGGAC+AGG | 0.623183 | 1_3:-54181127 | None:intergenic |
| ACATGCTGCTGCAAACTGCA+AGG | 0.624025 | 1_3:+54180175 | Msa0125640:CDS |
| GCAATATCATCAGGGAACCT+GGG | 0.624982 | 1_3:+54181493 | Msa0125640:intron |
| AATAATAGAGGAACCGAAAG+CGG | 0.626618 | 1_3:+54178833 | Msa0125640:five_prime_UTR |
| TCATAGCTACCGTTCAACAA+CGG | 0.627076 | 1_3:+54181289 | Msa0125640:CDS |
| ACTCCTTTAAGTGAATAAGT+GGG | 0.630424 | 1_3:+54182208 | Msa0125640:three_prime_UTR |
| GAACGGTGTTAAAATGGAGT+TGG | 0.636523 | 1_3:+54179838 | Msa0125640:CDS |
| AAAGCCTGTCCGTGAACTCG+TGG | 0.642217 | 1_3:+54181123 | Msa0125640:CDS |
| TTGGGTTCTAGGAACTCCTG+AGG | 0.644314 | 1_3:+54181389 | Msa0125640:CDS |
| GGAAACAAGCTGTCTAAGAG+AGG | 0.644922 | 1_3:-54181885 | None:intergenic |
| CCTCCATTGACAAATACACA+AGG | 0.650568 | 1_3:-54181906 | None:intergenic |
| CTTGTCCCTATGATTGCCAG+GGG | 0.651791 | 1_3:+54179746 | Msa0125640:CDS |
| CCAGCAGCCGAATCACTGAA+CGG | 0.657663 | 1_3:+54179821 | Msa0125640:CDS |
| TAAGGACATTACAATATGAG+AGG | 0.657850 | 1_3:-54182253 | None:intergenic |
| CTAGAAAAGAAGGTATGGAG+AGG | 0.663254 | 1_3:+54180093 | Msa0125640:CDS |
| GAATGAATAGATTAGTCCAG+CGG | 0.674762 | 1_3:-54181555 | None:intergenic |
| GTGGGATGTCAAGCATGTGG+AGG | 0.682561 | 1_3:-54179799 | None:intergenic |
| CAGTGACAAGAACACGAACA+GGG | 0.694789 | 1_3:-54179025 | None:intergenic |
| ATAGCTACCGTTCAACAACG+GGG | 0.798391 | 1_3:+54181291 | Msa0125640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATTATTATTATTTAA+AGG | - | chr1_3:54178818-54178837 | None:intergenic | 0.0% |
| !!! | TTTATTTTAACTTTTGATAT+AGG | + | chr1_3:54179536-54179555 | Msa0125640:intron | 10.0% |
| !! | AGAAAATTGCATAATTATAA+GGG | - | chr1_3:54179365-54179384 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTGACATAAAATG+CGG | - | chr1_3:54180261-54180280 | None:intergenic | 15.0% |
| !! | ATGTGAAAAATGTTATAATT+TGG | + | chr1_3:54181035-54181054 | Msa0125640:CDS | 15.0% |
| !! | TGTGAAAAATGTTATAATTT+GGG | + | chr1_3:54181036-54181055 | Msa0125640:CDS | 15.0% |
| !! | TTCAAATTCTTTATATTGAA+TGG | + | chr1_3:54181438-54181457 | Msa0125640:intron | 15.0% |
| !! | CTTAATTTACAAATAAAAGA+CGG | - | chr1_3:54181698-54181717 | None:intergenic | 15.0% |
| !!! | TTGTTTTATATAGCAAATAA+AGG | + | chr1_3:54181724-54181743 | Msa0125640:intron | 15.0% |
| !!! | ACTCTTTGTTTTTTTTTTTT+TGG | + | chr1_3:54182159-54182178 | Msa0125640:three_prime_UTR | 15.0% |
| !! | AACATTTATCAATAAAATAG+TGG | - | chr1_3:54182312-54182331 | None:intergenic | 15.0% |
| !! | ACTATTTGTCTATTTATTCA+CGG | - | chr1_3:54178902-54178921 | None:intergenic | 20.0% |
| !!! | CTTTTGTTTTGTTTTGTTTA+AGG | + | chr1_3:54179096-54179115 | Msa0125640:intron | 20.0% |
| !! | TTTAGAAATAGAACTATGTT+TGG | + | chr1_3:54179193-54179212 | Msa0125640:intron | 20.0% |
| !! | CAGAAAATTGCATAATTATA+AGG | - | chr1_3:54179366-54179385 | None:intergenic | 20.0% |
| !! | TTTCTATAAACTCTCAAATA+GGG | - | chr1_3:54179415-54179434 | None:intergenic | 20.0% |
| !! | ATTTCTATAAACTCTCAAAT+AGG | - | chr1_3:54179416-54179435 | None:intergenic | 20.0% |
| !!! | GTAAACATTTTAACCATATT+TGG | - | chr1_3:54179631-54179650 | None:intergenic | 20.0% |
| !! | ATTTCAACATAAAATCTTTG+AGG | + | chr1_3:54179665-54179684 | Msa0125640:intron | 20.0% |
| !!! | AAAAATGTTTTGCCAATTTT+AGG | + | chr1_3:54179707-54179726 | Msa0125640:intron | 20.0% |
| !! | TTGTGAAAATTATTTGTTTC+AGG | + | chr1_3:54179999-54180018 | Msa0125640:intron | 20.0% |
| !! | AAAAAATATGTTCCATTCTA+TGG | + | chr1_3:54180274-54180293 | Msa0125640:intron | 20.0% |
| !! | ACAACTTAATTAAATTCGTA+TGG | - | chr1_3:54180563-54180582 | None:intergenic | 20.0% |
| !!! | TACGAATTTAATTAAGTTGT+TGG | + | chr1_3:54180563-54180582 | Msa0125640:intron | 20.0% |
| !!! | TAGTCCTTTTTACATATTTT+TGG | + | chr1_3:54180797-54180816 | Msa0125640:intron | 20.0% |
| !! | GTTTCCAAAAATATGTAAAA+AGG | - | chr1_3:54180804-54180823 | None:intergenic | 20.0% |
| !! | GTGAAAAATGTTATAATTTG+GGG | + | chr1_3:54181037-54181056 | Msa0125640:CDS | 20.0% |
| !!! | AGATTTTGATAAATTATTGC+TGG | + | chr1_3:54181621-54181640 | Msa0125640:intron | 20.0% |
| !!! | CGTCTTTTATTTGTAAATTA+AGG | + | chr1_3:54181696-54181715 | Msa0125640:intron | 20.0% |
| !!! | TCAATTCTCAATTTTGAATA+AGG | + | chr1_3:54181941-54181960 | Msa0125640:three_prime_UTR | 20.0% |
| !! | TAGTGGTAAAATATCAAATA+CGG | - | chr1_3:54182295-54182314 | None:intergenic | 20.0% |
| !!! | TGTTTTTTTGGATGAAAGAA+AGG | - | chr1_3:54178994-54179013 | None:intergenic | 25.0% |
| ! | TCTTTCATCCAAAAAAACAA+TGG | + | chr1_3:54178995-54179014 | Msa0125640:exon | 25.0% |
| ! | AGGTAACCATAATAAATTCT+GGG | + | chr1_3:54179055-54179074 | Msa0125640:intron | 25.0% |
| ! | TTTATTTCCATAATCTCTCT+AGG | + | chr1_3:54179467-54179486 | Msa0125640:intron | 25.0% |
| ! | TGAAGTTGTTTATCCAAATA+TGG | + | chr1_3:54179615-54179634 | Msa0125640:intron | 25.0% |
| ! | TATCCAATTTGTCCTAAAAT+TGG | - | chr1_3:54179722-54179741 | None:intergenic | 25.0% |
| !! | TAAATGTTACTTGAACTTCT+TGG | + | chr1_3:54179908-54179927 | Msa0125640:intron | 25.0% |
| ! | AAATGCTTTGCAAGATTAAA+AGG | + | chr1_3:54179974-54179993 | Msa0125640:intron | 25.0% |
| ! | TGAAAGAGATACATGAAAAA+GGG | - | chr1_3:54180310-54180329 | None:intergenic | 25.0% |
| ! | AACTAAAATAAATTCAGTGC+AGG | - | chr1_3:54180662-54180681 | None:intergenic | 25.0% |
| !!! | ATGTGTATTTTGGTCATATA+TGG | + | chr1_3:54180716-54180735 | Msa0125640:intron | 25.0% |
| ! | ACAGAGTTTAAAGAAATGTA+AGG | - | chr1_3:54180849-54180868 | None:intergenic | 25.0% |
| !! | AAACAAGAAATGTTTTTCTC+AGG | - | chr1_3:54180950-54180969 | None:intergenic | 25.0% |
| ! | ATACTTCAGTAAATGCAAAA+TGG | - | chr1_3:54181233-54181252 | None:intergenic | 25.0% |
| !! | TTTTCATTGCAATATCATCA+GGG | + | chr1_3:54181485-54181504 | Msa0125640:intron | 25.0% |
| !!! | ATCTGTCTAATTTTTTAACC+AGG | + | chr1_3:54181778-54181797 | Msa0125640:intron | 25.0% |
| !! | TATCAATTGATGAGTTTTCA+AGG | + | chr1_3:54181803-54181822 | Msa0125640:CDS | 25.0% |
| !!! | TGAGTTTTCAAGGAAAAAAT+TGG | + | chr1_3:54181813-54181832 | Msa0125640:CDS | 25.0% |
| ! | AATTGAGAATTGACAAACAA+TGG | - | chr1_3:54181934-54181953 | None:intergenic | 25.0% |
| ! | TTTGAAAAGTTTATGTCTTC+TGG | + | chr1_3:54182104-54182123 | Msa0125640:three_prime_UTR | 25.0% |
| AGAGAATATTCTATCTTGCT+TGG | + | chr1_3:54178764-54178783 | Msa0125640:five_prime_UTR | 30.0% | |
| !!! | GTCTTTAGCCATTGTTTTTT+TGG | - | chr1_3:54179006-54179025 | None:intergenic | 30.0% |
| CAGGTAACCATAATAAATTC+TGG | + | chr1_3:54179054-54179073 | Msa0125640:intron | 30.0% | |
| GAGAAACCCAGAATTTATTA+TGG | - | chr1_3:54179064-54179083 | None:intergenic | 30.0% | |
| CAATCAAGAAACATGATACA+AGG | - | chr1_3:54179167-54179186 | None:intergenic | 30.0% | |
| CTTGTATCATGTTTCTTGAT+TGG | + | chr1_3:54179165-54179184 | Msa0125640:intron | 30.0% | |
| TAGGGAAAATACTACAATTG+AGG | - | chr1_3:54179397-54179416 | None:intergenic | 30.0% | |
| AAGTTATCCTAGAGAGATTA+TGG | - | chr1_3:54179477-54179496 | None:intergenic | 30.0% | |
| !!! | TTGCCAATTTTAGGACAAAT+TGG | + | chr1_3:54179716-54179735 | Msa0125640:intron | 30.0% |
| ! | AACTCAAACCTTTAAGAAGA+GGG | - | chr1_3:54179877-54179896 | None:intergenic | 30.0% |
| ! | AAACTCAAACCTTTAAGAAG+AGG | - | chr1_3:54179878-54179897 | None:intergenic | 30.0% |
| AAAGAGATACATGAAAAAGG+GGG | - | chr1_3:54180308-54180327 | None:intergenic | 30.0% | |
| GAAAGAGATACATGAAAAAG+GGG | - | chr1_3:54180309-54180328 | None:intergenic | 30.0% | |
| CTGAAAGAGATACATGAAAA+AGG | - | chr1_3:54180311-54180330 | None:intergenic | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | - | chr1_3:54180335-54180354 | None:intergenic | 30.0% | |
| ! | TTGTCATAGTTTTTGTGTGA+TGG | + | chr1_3:54180611-54180630 | Msa0125640:intron | 30.0% |
| ! | TTAGTTTAGTGCTGAAAAAG+TGG | + | chr1_3:54180676-54180695 | Msa0125640:intron | 30.0% |
| ! | AGAAATGTTTTTCTCAGGAA+TGG | - | chr1_3:54180945-54180964 | None:intergenic | 30.0% |
| ! | CATTTCTTGTTTGACAAGAT+TGG | + | chr1_3:54180958-54180977 | Msa0125640:CDS | 30.0% |
| ! | TGATGTAATTTTCATCGTCA+AGG | + | chr1_3:54181253-54181272 | Msa0125640:intron | 30.0% |
| ! | TTTTCATCGTCAAGGTTAAA+TGG | + | chr1_3:54181261-54181280 | Msa0125640:intron | 30.0% |
| ATATTGAATGGCTTCAACTA+AGG | + | chr1_3:54181450-54181469 | Msa0125640:intron | 30.0% | |
| ! | CTTTTCATTGCAATATCATC+AGG | + | chr1_3:54181484-54181503 | Msa0125640:intron | 30.0% |
| TTTCCTTGTGTATTTGTCAA+TGG | + | chr1_3:54181903-54181922 | Msa0125640:three_prime_UTR | 30.0% | |
| AGATATTGAGAAACTCTTGA+TGG | + | chr1_3:54181972-54181991 | Msa0125640:three_prime_UTR | 30.0% | |
| ! | CAAGTGATGATTTGCATAAA+AGG | - | chr1_3:54182007-54182026 | None:intergenic | 30.0% |
| ! | AGACATAAACTTTTCAAACG+CGG | - | chr1_3:54182102-54182121 | None:intergenic | 30.0% |
| ACTCCTTTAAGTGAATAAGT+GGG | + | chr1_3:54182208-54182227 | Msa0125640:three_prime_UTR | 30.0% | |
| TTTCCCACTTATTCACTTAA+AGG | - | chr1_3:54182214-54182233 | None:intergenic | 30.0% | |
| AAGTGAATAAGTGGGAAATT+CGG | + | chr1_3:54182216-54182235 | Msa0125640:three_prime_UTR | 30.0% | |
| TAAGGACATTACAATATGAG+AGG | - | chr1_3:54182256-54182275 | None:intergenic | 30.0% | |
| ATATTCTATCTTGCTTGGCA+TGG | + | chr1_3:54178769-54178788 | Msa0125640:five_prime_UTR | 35.0% | |
| GGAGATTGCTGATAAATAAG+TGG | - | chr1_3:54178797-54178816 | None:intergenic | 35.0% | |
| AATAATAGAGGAACCGAAAG+CGG | + | chr1_3:54178833-54178852 | Msa0125640:five_prime_UTR | 35.0% | |
| ATTAACTGCTTGCAACTACT+AGG | - | chr1_3:54179291-54179310 | None:intergenic | 35.0% | |
| TTTAACACCGTTCAGTGATT+CGG | - | chr1_3:54179831-54179850 | None:intergenic | 35.0% | |
| ! | ATCACTGAACGGTGTTAAAA+TGG | + | chr1_3:54179832-54179851 | Msa0125640:CDS | 35.0% |
| CCAACTTCAAACCAGAAATA+TGG | - | chr1_3:54179938-54179957 | None:intergenic | 35.0% | |
| !! | CCATATTTCTGGTTTGAAGT+TGG | + | chr1_3:54179935-54179954 | Msa0125640:intron | 35.0% |
| ! | TGGAGTCAATATTGCTGTTA+TGG | + | chr1_3:54180058-54180077 | Msa0125640:CDS | 35.0% |
| ! | GTCAATATTGCTGTTATGGT+TGG | + | chr1_3:54180062-54180081 | Msa0125640:CDS | 35.0% |
| ! | AATATTGCTGTTATGGTTGG+TGG | + | chr1_3:54180065-54180084 | Msa0125640:CDS | 35.0% |
| ATTCCCTAGAAAAGAAGGTA+TGG | + | chr1_3:54180088-54180107 | Msa0125640:CDS | 35.0% | |
| ! | TCTCCATACCTTCTTTTCTA+GGG | - | chr1_3:54180094-54180113 | None:intergenic | 35.0% |
| CTTATTTCCATAAGCTCTAC+AGG | + | chr1_3:54180444-54180463 | Msa0125640:intron | 35.0% | |
| ATTCAGTGCAGGTAATGTAT+TGG | - | chr1_3:54180651-54180670 | None:intergenic | 35.0% | |
| !! | TGGTTGGTTCATGTGTATTT+TGG | + | chr1_3:54180706-54180725 | Msa0125640:intron | 35.0% |
| AGAAACAGATTTCACCAGAA+TGG | - | chr1_3:54180758-54180777 | None:intergenic | 35.0% | |
| ! | ATGTTTTTCTCAGGAATGGA+TGG | - | chr1_3:54180941-54180960 | None:intergenic | 35.0% |
| !! | AAGCAATTTTAACAGTTGCG+TGG | - | chr1_3:54181096-54181115 | None:intergenic | 35.0% |
| TATTTGTCCATCAACATACC+AGG | - | chr1_3:54181158-54181177 | None:intergenic | 35.0% | |
| TTGTGACCACATTAGAGATT+GGG | + | chr1_3:54181371-54181390 | Msa0125640:CDS | 35.0% | |
| ! | AATGAATAGATTAGTCCAGC+GGG | - | chr1_3:54181557-54181576 | None:intergenic | 35.0% |
| ! | GAATGAATAGATTAGTCCAG+CGG | - | chr1_3:54181558-54181577 | None:intergenic | 35.0% |
| ! | AACTCATCAATTGATAGTCC+TGG | - | chr1_3:54181799-54181818 | None:intergenic | 35.0% |
| ATTGAGAAACTCTTGATGGA+TGG | + | chr1_3:54181976-54181995 | Msa0125640:three_prime_UTR | 35.0% | |
| !! | TTTTTGGCGAATTAACCTGT+TGG | + | chr1_3:54182175-54182194 | Msa0125640:three_prime_UTR | 35.0% |
| CACTCCTTTAAGTGAATAAG+TGG | + | chr1_3:54182207-54182226 | Msa0125640:three_prime_UTR | 35.0% | |
| GACATTACAATATGAGAGGA+CGG | - | chr1_3:54182252-54182271 | None:intergenic | 35.0% | |
| AATACGGAGCATAACTTAGT+TGG | - | chr1_3:54182279-54182298 | None:intergenic | 35.0% | |
| ATGCTACTCCTACTCATGAA+AGG | - | chr1_3:54178871-54178890 | None:intergenic | 40.0% | |
| TTCATGAGTAGGAGTAGCAT+TGG | + | chr1_3:54178871-54178890 | Msa0125640:five_prime_UTR | 40.0% | |
| ! | GAACGGTGTTAAAATGGAGT+TGG | + | chr1_3:54179838-54179857 | Msa0125640:CDS | 40.0% |
| TTCTTGGACAGCCATATTTC+TGG | + | chr1_3:54179924-54179943 | Msa0125640:intron | 40.0% | |
| ! | GGTTTGAAGTTGGATTGTGT+TGG | + | chr1_3:54179945-54179964 | Msa0125640:intron | 40.0% |
| TGTTGTTGCTACAACTGATG+TGG | + | chr1_3:54180022-54180041 | Msa0125640:CDS | 40.0% | |
| ! | CTCTCCATACCTTCTTTTCT+AGG | - | chr1_3:54180095-54180114 | None:intergenic | 40.0% |
| ! | CTAGAAAAGAAGGTATGGAG+AGG | + | chr1_3:54180093-54180112 | Msa0125640:CDS | 40.0% |
| TTTCTCAAGAGCAGAAGCTT+GGG | - | chr1_3:54180156-54180175 | None:intergenic | 40.0% | |
| GCTTGAGCGTTCAGAATTAA+AGG | - | chr1_3:54180205-54180224 | None:intergenic | 40.0% | |
| GTATCTCTTTCAGACCTGTT+TGG | + | chr1_3:54180318-54180337 | Msa0125640:intron | 40.0% | |
| AAGCTATCCTGTAGAGCTTA+TGG | - | chr1_3:54180454-54180473 | None:intergenic | 40.0% | |
| AAAAAGTGGTTCCATCTGGT+TGG | + | chr1_3:54180690-54180709 | Msa0125640:intron | 40.0% | |
| ATACACATGAACCAACCAGA+TGG | - | chr1_3:54180704-54180723 | None:intergenic | 40.0% | |
| AAGTCCTTGTGATTCCATTC+TGG | + | chr1_3:54180741-54180760 | Msa0125640:intron | 40.0% | |
| TTCACCAGAATGGAATCACA+AGG | - | chr1_3:54180748-54180767 | None:intergenic | 40.0% | |
| TAAACTCTGTATCACCATGC+AGG | + | chr1_3:54180859-54180878 | Msa0125640:intron | 40.0% | |
| TTCCTTCAAGATCAAGGCAT+TGG | - | chr1_3:54180912-54180931 | None:intergenic | 40.0% | |
| AGCGAATTCCTTCAAGATCA+AGG | - | chr1_3:54180918-54180937 | None:intergenic | 40.0% | |
| TGACAAGATTGGACCATAAC+AGG | + | chr1_3:54180969-54180988 | Msa0125640:CDS | 40.0% | |
| GACAAGATTGGACCATAACA+GGG | + | chr1_3:54180970-54180989 | Msa0125640:CDS | 40.0% | |
| TCATAGCTACCGTTCAACAA+CGG | + | chr1_3:54181289-54181308 | Msa0125640:CDS | 40.0% | |
| CTTGTGACCACATTAGAGAT+TGG | + | chr1_3:54181370-54181389 | Msa0125640:CDS | 40.0% | |
| CTAGAACCCAATCTCTAATG+TGG | - | chr1_3:54181380-54181399 | None:intergenic | 40.0% | |
| CACATTAGAGATTGGGTTCT+AGG | + | chr1_3:54181378-54181397 | Msa0125640:CDS | 40.0% | |
| TCGATGGGAGTTTATTCTGA+TGG | + | chr1_3:54181518-54181537 | Msa0125640:CDS | 40.0% | |
| CCTCCATTGACAAATACACA+AGG | - | chr1_3:54181909-54181928 | None:intergenic | 40.0% | |
| CCTTGTGTATTTGTCAATGG+AGG | + | chr1_3:54181906-54181925 | Msa0125640:three_prime_UTR | 40.0% | |
| ! | GAGCATATGTCATTTGAGTC+AGG | + | chr1_3:54182068-54182087 | Msa0125640:three_prime_UTR | 40.0% |
| GGAGTGAATTTATAGCCAAC+AGG | - | chr1_3:54182193-54182212 | None:intergenic | 40.0% | |
| ! | GGAGCATAACTTAGTTGGTA+AGG | - | chr1_3:54182274-54182293 | None:intergenic | 40.0% |
| GTTTCACGCCTTTCATGAGT+AGG | + | chr1_3:54178860-54178879 | Msa0125640:five_prime_UTR | 45.0% | |
| CAGTGACAAGAACACGAACA+GGG | - | chr1_3:54179028-54179047 | None:intergenic | 45.0% | |
| TCTTGTCCCTATGATTGCCA+GGG | + | chr1_3:54179745-54179764 | Msa0125640:CDS | 45.0% | |
| ! | CGGTGTTAAAATGGAGTTGG+TGG | + | chr1_3:54179841-54179860 | Msa0125640:CDS | 45.0% |
| GCTGCATTCCCTCTTCTTAA+AGG | + | chr1_3:54179866-54179885 | Msa0125640:CDS | 45.0% | |
| TGCTACAACTGATGTGGTTG+AGG | + | chr1_3:54180028-54180047 | Msa0125640:CDS | 45.0% | |
| GCTACAACTGATGTGGTTGA+GGG | + | chr1_3:54180029-54180048 | Msa0125640:CDS | 45.0% | |
| ! | GGTGGATTCCCTAGAAAAGA+AGG | + | chr1_3:54180083-54180102 | Msa0125640:CDS | 45.0% |
| GTTTCTCAAGAGCAGAAGCT+TGG | - | chr1_3:54180157-54180176 | None:intergenic | 45.0% | |
| ATACATGAAAAAGGGGGAGG+AGG | - | chr1_3:54180302-54180321 | None:intergenic | 45.0% | |
| GAGATACATGAAAAAGGGGG+AGG | - | chr1_3:54180305-54180324 | None:intergenic | 45.0% | |
| GTCTCACAAGTGCTTGCTTA+TGG | - | chr1_3:54180370-54180389 | None:intergenic | 45.0% | |
| AAGCACTTGTGAGACTGCTT+GGG | + | chr1_3:54180375-54180394 | Msa0125640:intron | 45.0% | |
| GCTGAAAAAGTGGTTCCATC+TGG | + | chr1_3:54180686-54180705 | Msa0125640:intron | 45.0% | |
| !! | ATCAAGGCATTGGTGTTTGC+CGG | - | chr1_3:54180902-54180921 | None:intergenic | 45.0% |
| CACCAATGCCTTGATCTTGA+AGG | + | chr1_3:54180907-54180926 | Msa0125640:CDS | 45.0% | |
| !! | CAGGGTACTGACTTGATGAA+TGG | - | chr1_3:54181066-54181085 | None:intergenic | 45.0% |
| GATGATGCCTGGTATGTTGA+TGG | + | chr1_3:54181148-54181167 | Msa0125640:intron | 45.0% | |
| CATAGCTACCGTTCAACAAC+GGG | + | chr1_3:54181290-54181309 | Msa0125640:CDS | 45.0% | |
| ATAGCTACCGTTCAACAACG+GGG | + | chr1_3:54181291-54181310 | Msa0125640:CDS | 45.0% | |
| AGCAAGACATAACCAACCTC+AGG | - | chr1_3:54181408-54181427 | None:intergenic | 45.0% | |
| TGCAATATCATCAGGGAACC+TGG | + | chr1_3:54181492-54181511 | Msa0125640:intron | 45.0% | |
| GCAATATCATCAGGGAACCT+GGG | + | chr1_3:54181493-54181512 | Msa0125640:intron | 45.0% | |
| ATAAACTCCCATCGATACCC+AGG | - | chr1_3:54181513-54181532 | None:intergenic | 45.0% | |
| GGCGAATGGCAAATAGTTCA+AGG | + | chr1_3:54181596-54181615 | Msa0125640:CDS | 45.0% | |
| ! | AGAAGAGCTTTCTGAGGAGA+AGG | + | chr1_3:54181846-54181865 | Msa0125640:CDS | 45.0% |
| GGAAACAAGCTGTCTAAGAG+AGG | - | chr1_3:54181888-54181907 | None:intergenic | 45.0% | |
| !! | AATAATAATAATAATAATAG+AGG | + | chr1_3:54178821-54178840 | Msa0125640:five_prime_UTR | 5.0% |
| CCAGTGACAAGAACACGAAC+AGG | - | chr1_3:54179029-54179048 | None:intergenic | 50.0% | |
| CCTGTTCGTGTTCTTGTCAC+TGG | + | chr1_3:54179026-54179045 | Msa0125640:CDS | 50.0% | |
| CTCTTGTCCCTATGATTGCC+AGG | + | chr1_3:54179744-54179763 | Msa0125640:CDS | 50.0% | |
| CTTGTCCCTATGATTGCCAG+GGG | + | chr1_3:54179746-54179765 | Msa0125640:CDS | 50.0% | |
| TCACTCCCCTGGCAATCATA+GGG | - | chr1_3:54179754-54179773 | None:intergenic | 50.0% | |
| ATCACTCCCCTGGCAATCAT+AGG | - | chr1_3:54179755-54179774 | None:intergenic | 50.0% | |
| TCAAGCATGTGGAGGATCAC+GGG | - | chr1_3:54179794-54179813 | None:intergenic | 50.0% | |
| GTCAAGCATGTGGAGGATCA+CGG | - | chr1_3:54179795-54179814 | None:intergenic | 50.0% | |
| ACATGCTGCTGCAAACTGCA+AGG | + | chr1_3:54180175-54180194 | Msa0125640:CDS | 50.0% | |
| CAAGCACTTGTGAGACTGCT+TGG | + | chr1_3:54180374-54180393 | Msa0125640:intron | 50.0% | |
| !! | TCAAGGCATTGGTGTTTGCC+GGG | - | chr1_3:54180901-54180920 | None:intergenic | 50.0% |
| ATTGGACCATAACAGGGCTC+TGG | + | chr1_3:54180976-54180995 | Msa0125640:CDS | 50.0% | |
| TTGGACCATAACAGGGCTCT+GGG | + | chr1_3:54180977-54180996 | Msa0125640:CDS | 50.0% | |
| TTTGACCCAGAGCCCTGTTA+TGG | - | chr1_3:54180985-54181004 | None:intergenic | 50.0% | |
| CAGTTGCGTGGTTGACATCA+GGG | - | chr1_3:54181084-54181103 | None:intergenic | 50.0% | |
| ACAGTTGCGTGGTTGACATC+AGG | - | chr1_3:54181085-54181104 | None:intergenic | 50.0% | |
| CATCATCAGCCACGAGTTCA+CGG | - | chr1_3:54181135-54181154 | None:intergenic | 50.0% | |
| !! | TTGGGTTCTAGGAACTCCTG+AGG | + | chr1_3:54181389-54181408 | Msa0125640:CDS | 50.0% |
| !! | GTTCTAGGAACTCCTGAGGT+TGG | + | chr1_3:54181393-54181412 | Msa0125640:intron | 50.0% |
| GGATCTTACAATGTACCCGC+TGG | + | chr1_3:54181539-54181558 | Msa0125640:CDS | 50.0% | |
| TTCCCTGTCACAACTCGCAA+TGG | + | chr1_3:54181575-54181594 | Msa0125640:CDS | 50.0% | |
| TCACAACTCGCAATGGCGAA+TGG | + | chr1_3:54181582-54181601 | Msa0125640:CDS | 50.0% | |
| GACAGCAGAAGAGCTTTCTG+AGG | + | chr1_3:54181840-54181859 | Msa0125640:CDS | 50.0% | |
| ! | GCTTTCTGAGGAGAAGGCTT+TGG | + | chr1_3:54181852-54181871 | Msa0125640:CDS | 50.0% |
| GCGTGAAACGACACCGCTTT+CGG | - | chr1_3:54178849-54178868 | None:intergenic | 55.0% | |
| !! | GTTCTTGTCACTGGTGCTGC+AGG | + | chr1_3:54179035-54179054 | Msa0125640:CDS | 55.0% |
| ATTGCCAGGGGAGTGATGCT+CGG | + | chr1_3:54179758-54179777 | Msa0125640:CDS | 55.0% | |
| GTGGGATGTCAAGCATGTGG+AGG | - | chr1_3:54179802-54179821 | None:intergenic | 55.0% | |
| CTGGTGGGATGTCAAGCATG+TGG | - | chr1_3:54179805-54179824 | None:intergenic | 55.0% | |
| ! | TCAGTGATTCGGCTGCTGGT+GGG | - | chr1_3:54179820-54179839 | None:intergenic | 55.0% |
| ! | TTCAGTGATTCGGCTGCTGG+TGG | - | chr1_3:54179821-54179840 | None:intergenic | 55.0% |
| CCAGCAGCCGAATCACTGAA+CGG | + | chr1_3:54179821-54179840 | Msa0125640:CDS | 55.0% | |
| GATGTGGTTGAGGGATGCAC+TGG | + | chr1_3:54180038-54180057 | Msa0125640:CDS | 55.0% | |
| GGGGAGGAGGAACCATAGAA+TGG | - | chr1_3:54180289-54180308 | None:intergenic | 55.0% | |
| AGACTGCTTGGGAGAGCTCA+TGG | + | chr1_3:54180386-54180405 | Msa0125640:intron | 55.0% | |
| GGCAACAACGAGAACCTGCA+TGG | - | chr1_3:54180876-54180895 | None:intergenic | 55.0% | |
| GGTTCTCGTTGTTGCCAACC+CGG | + | chr1_3:54180880-54180899 | Msa0125640:intron | 55.0% | |
| AAAGCCTGTCCGTGAACTCG+TGG | + | chr1_3:54181123-54181142 | Msa0125640:CDS | 55.0% | |
| ! | AACTCGTGGCTGATGATGCC+TGG | + | chr1_3:54181137-54181156 | Msa0125640:CDS | 55.0% |
| TGCAGCACCCCGTTGTTGAA+CGG | - | chr1_3:54181301-54181320 | None:intergenic | 55.0% | |
| !! | TCAGGGAACCTGGGTATCGA+TGG | + | chr1_3:54181502-54181521 | Msa0125640:intron | 55.0% |
| !! | CAGGGAACCTGGGTATCGAT+GGG | + | chr1_3:54181503-54181522 | Msa0125640:intron | 55.0% |
| CGCCATTGCGAGTTGTGACA+GGG | - | chr1_3:54181580-54181599 | None:intergenic | 55.0% | |
| TCGCCATTGCGAGTTGTGAC+AGG | - | chr1_3:54181581-54181600 | None:intergenic | 55.0% | |
| ! | CCGTTCAGTGATTCGGCTGC+TGG | - | chr1_3:54179824-54179843 | None:intergenic | 60.0% |
| !! | GGCATTGGTGTTTGCCGGGT+TGG | - | chr1_3:54180897-54180916 | None:intergenic | 60.0% |
| TCAGCCACGAGTTCACGGAC+AGG | - | chr1_3:54181130-54181149 | None:intergenic | 60.0% | |
| !! | GGAGGATCACGGGCTGGTCA+GGG | - | chr1_3:54179784-54179803 | None:intergenic | 65.0% |
| !! | TGGAGGATCACGGGCTGGTC+AGG | - | chr1_3:54179785-54179804 | None:intergenic | 65.0% |
| GCATGTGGAGGATCACGGGC+TGG | - | chr1_3:54179790-54179809 | None:intergenic | 65.0% | |
| GTGGTCACAAGCAGCGCTCG+CGG | - | chr1_3:54181361-54181380 | None:intergenic | 65.0% | |
| AGGGCCGAGCATCACTCCCC+TGG | - | chr1_3:54179765-54179784 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 54178724 | 54182350 | 54178724 | ID=Msa0125640;Name=Msa0125640 |
| chr1_3 | mRNA | 54178724 | 54182350 | 54178724 | ID=Msa0125640-mRNA-1;Parent=Msa0125640;Name=Msa0125640-mRNA-1;_AED=0.02;_eAED=0.02;_QI=290|1|1|1|1|1|7|456|332 |
| chr1_3 | exon | 54178724 | 54179056 | 54178724 | ID=Msa0125640-mRNA-1:exon:16656;Parent=Msa0125640-mRNA-1 |
| chr1_3 | exon | 54179729 | 54179887 | 54179729 | ID=Msa0125640-mRNA-1:exon:16657;Parent=Msa0125640-mRNA-1 |
| chr1_3 | exon | 54180021 | 54180196 | 54180021 | ID=Msa0125640-mRNA-1:exon:16658;Parent=Msa0125640-mRNA-1 |
| chr1_3 | exon | 54180881 | 54181158 | 54180881 | ID=Msa0125640-mRNA-1:exon:16659;Parent=Msa0125640-mRNA-1 |
| chr1_3 | exon | 54181275 | 54181410 | 54181275 | ID=Msa0125640-mRNA-1:exon:16660;Parent=Msa0125640-mRNA-1 |
| chr1_3 | exon | 54181506 | 54181617 | 54181506 | ID=Msa0125640-mRNA-1:exon:16661;Parent=Msa0125640-mRNA-1 |
| chr1_3 | exon | 54181800 | 54182350 | 54181800 | ID=Msa0125640-mRNA-1:exon:16662;Parent=Msa0125640-mRNA-1 |
| chr1_3 | five_prime_UTR | 54178724 | 54179013 | 54178724 | ID=Msa0125640-mRNA-1:five_prime_utr;Parent=Msa0125640-mRNA-1 |
| chr1_3 | CDS | 54179014 | 54179056 | 54179014 | ID=Msa0125640-mRNA-1:cds;Parent=Msa0125640-mRNA-1 |
| chr1_3 | CDS | 54179729 | 54179887 | 54179729 | ID=Msa0125640-mRNA-1:cds;Parent=Msa0125640-mRNA-1 |
| chr1_3 | CDS | 54180021 | 54180196 | 54180021 | ID=Msa0125640-mRNA-1:cds;Parent=Msa0125640-mRNA-1 |
| chr1_3 | CDS | 54180881 | 54181158 | 54180881 | ID=Msa0125640-mRNA-1:cds;Parent=Msa0125640-mRNA-1 |
| chr1_3 | CDS | 54181275 | 54181410 | 54181275 | ID=Msa0125640-mRNA-1:cds;Parent=Msa0125640-mRNA-1 |
| chr1_3 | CDS | 54181506 | 54181617 | 54181506 | ID=Msa0125640-mRNA-1:cds;Parent=Msa0125640-mRNA-1 |
| chr1_3 | CDS | 54181800 | 54181894 | 54181800 | ID=Msa0125640-mRNA-1:cds;Parent=Msa0125640-mRNA-1 |
| chr1_3 | three_prime_UTR | 54181895 | 54182350 | 54181895 | ID=Msa0125640-mRNA-1:three_prime_utr;Parent=Msa0125640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
