Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170110 | sp|Q9FSF0|MDH_TOBAC | 92.771 | 332 | 24 | 0 | 1 | 332 | 1 | 332 | 0.0 | 619 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170110 | A0A072VMC4 | 99.699 | 332 | 1 | 0 | 1 | 332 | 1 | 332 | 0.0 | 681 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006040 | Msa0170110 | -0.816006 | 6.907348e-52 | -8.615850e-47 |
| Msa0007440 | Msa0170110 | -0.801202 | 1.006224e-48 | -8.615850e-47 |
| Msa0030150 | Msa0170110 | 0.853909 | 1.749069e-61 | -8.615850e-47 |
| Msa0042980 | Msa0170110 | 0.850865 | 1.287737e-60 | -8.615850e-47 |
| Msa0054750 | Msa0170110 | -0.824686 | 7.055660e-54 | -8.615850e-47 |
| Msa0063350 | Msa0170110 | 0.839545 | 1.486117e-57 | -8.615850e-47 |
| Msa0068740 | Msa0170110 | 0.819660 | 1.033748e-52 | -8.615850e-47 |
| Msa0075880 | Msa0170110 | -0.803930 | 2.755594e-49 | -8.615850e-47 |
| Msa0091250 | Msa0170110 | 0.802977 | 4.342765e-49 | -8.615850e-47 |
| Msa0125640 | Msa0170110 | 0.889806 | 1.740780e-73 | -8.615850e-47 |
| Msa0136890 | Msa0170110 | 0.851855 | 6.761000e-61 | -8.615850e-47 |
| Msa0137710 | Msa0170110 | 0.840427 | 8.754017e-58 | -8.615850e-47 |
| Msa0170110 | Msa0178860 | 0.842034 | 3.308366e-58 | -8.615850e-47 |
| Msa0170110 | Msa0182790 | 0.830938 | 2.215030e-55 | -8.615850e-47 |
| Msa0170110 | Msa0187950 | -0.810833 | 9.467667e-51 | -8.615850e-47 |
| Msa0170110 | Msa0204940 | -0.814439 | 1.539701e-51 | -8.615850e-47 |
| Msa0170110 | Msa0302580 | 0.818653 | 1.751714e-52 | -8.615850e-47 |
| Msa0170110 | Msa0306210 | 0.832315 | 1.014185e-55 | -8.615850e-47 |
| Msa0170110 | Msa0381600 | 0.800295 | 1.540813e-48 | -8.615850e-47 |
| Msa0170110 | Msa0383400 | 0.821922 | 3.121054e-53 | -8.615850e-47 |
| Msa0170110 | Msa0389610 | 0.830077 | 3.598625e-55 | -8.615850e-47 |
| Msa0170110 | Msa0394340 | -0.820774 | 5.741680e-53 | -8.615850e-47 |
| Msa0170110 | Msa0412840 | -0.847492 | 1.117312e-59 | -8.615850e-47 |
| Msa0170110 | Msa0433410 | 0.827937 | 1.187275e-54 | -8.615850e-47 |
| Msa0170110 | Msa0442200 | -0.807802 | 4.230887e-50 | -8.615850e-47 |
| Msa0170110 | Msa0457510 | -0.859290 | 4.582616e-63 | -8.615850e-47 |
| Msa0170110 | Msa0460400 | 0.822783 | 1.969137e-53 | -8.615850e-47 |
| Msa0170110 | Msa0472960 | 0.848560 | 5.669168e-60 | -8.615850e-47 |
| Msa0170110 | Msa0473730 | 0.823619 | 1.256201e-53 | -8.615850e-47 |
| Msa0170110 | Msa0477130 | 0.821728 | 3.460887e-53 | -8.615850e-47 |
| Msa0170110 | Msa0482190 | 0.806935 | 6.458826e-50 | -8.615850e-47 |
| Msa0170110 | Msa0485500 | 0.801391 | 9.204936e-49 | -8.615850e-47 |
| Msa0170110 | Msa0517760 | 0.810615 | 1.055273e-50 | -8.615850e-47 |
| Msa0170110 | Msa0517830 | 0.804858 | 1.764960e-49 | -8.615850e-47 |
| Msa0170110 | Msa0528020 | 0.822589 | 2.184768e-53 | -8.615850e-47 |
| Msa0170110 | Msa0528610 | 0.820054 | 8.400350e-53 | -8.615850e-47 |
| Msa0170110 | Msa0561130 | 0.809462 | 1.870043e-50 | -8.615850e-47 |
| Msa0170110 | Msa0608710 | -0.813995 | 1.930282e-51 | -8.615850e-47 |
| Msa0170110 | Msa0623380 | 0.811254 | 7.675294e-51 | -8.615850e-47 |
| Msa0170110 | Msa0661190 | 0.804730 | 1.877445e-49 | -8.615850e-47 |
| Msa0170110 | Msa0661210 | -0.814176 | 1.760354e-51 | -8.615850e-47 |
| Msa0170110 | Msa0825240 | 0.815840 | 7.523294e-52 | -8.615850e-47 |
| Msa0170110 | Msa0827350 | 0.831135 | 1.982191e-55 | -8.615850e-47 |
| Msa0170110 | Msa0864470 | 0.820659 | 6.101899e-53 | -8.615850e-47 |
| Msa0170110 | Msa0879600 | -0.812694 | 3.727647e-51 | -8.615850e-47 |
| Msa0170110 | Msa0923870 | -0.827288 | 1.699340e-54 | -8.615850e-47 |
| Msa0170110 | Msa0942550 | 0.832439 | 9.445736e-56 | -8.615850e-47 |
| Msa0170110 | Msa0942560 | 0.822616 | 2.154044e-53 | -8.615850e-47 |
| Msa0170110 | Msa0946280 | 0.827740 | 1.323709e-54 | -8.615850e-47 |
| Msa0170110 | Msa0946690 | 0.873779 | 1.128779e-67 | -8.615850e-47 |
| Msa0170110 | Msa0982270 | -0.801779 | 7.665264e-49 | -8.615850e-47 |
| Msa0170110 | Msa0984220 | 0.825361 | 4.887914e-54 | -8.615850e-47 |
| Msa0170110 | Msa0994370 | -0.805100 | 1.571034e-49 | -8.615850e-47 |
| Msa0170110 | Msa1029080 | 0.861752 | 8.226545e-64 | -8.615850e-47 |
| Msa0170110 | Msa1055680 | -0.804120 | 2.515462e-49 | -8.615850e-47 |
| Msa0170110 | Msa1058170 | -0.813255 | 2.807426e-51 | -8.615850e-47 |
| Msa0170110 | Msa1079730 | 0.812854 | 3.438431e-51 | -8.615850e-47 |
| Msa0170110 | Msa1102790 | -0.820655 | 6.116980e-53 | -8.615850e-47 |
| Msa0170110 | Msa1124540 | 0.863202 | 2.946491e-64 | -8.615850e-47 |
| Msa0170110 | Msa1156170 | 0.865343 | 6.327836e-65 | -8.615850e-47 |
| Msa0170110 | Msa1168040 | 0.828203 | 1.024612e-54 | -8.615850e-47 |
| Msa0170110 | Msa1183100 | 0.859219 | 4.811385e-63 | -8.615850e-47 |
| Msa0170110 | Msa1191050 | 0.815051 | 1.126747e-51 | -8.615850e-47 |
| Msa0170110 | Msa1202770 | 0.808326 | 3.272575e-50 | -8.615850e-47 |
| Msa0170110 | Msa1207470 | 0.841714 | 4.018933e-58 | -8.615850e-47 |
| Msa0170110 | Msa1208650 | 0.822539 | 2.244493e-53 | -8.615850e-47 |
| Msa0170110 | Msa1224580 | 0.804853 | 1.769243e-49 | -8.615850e-47 |
| Msa0170110 | Msa1234730 | -0.800676 | 1.288974e-48 | -8.615850e-47 |
| Msa0170110 | Msa1244720 | 0.840125 | 1.049950e-57 | -8.615850e-47 |
| Msa0170110 | Msa1257800 | 0.842601 | 2.341267e-58 | -8.615850e-47 |
| Msa0170110 | Msa1258380 | 0.807432 | 5.070546e-50 | -8.615850e-47 |
| Msa0170110 | Msa1263630 | 0.807753 | 4.333820e-50 | -8.615850e-47 |
| Msa0170110 | Msa1284340 | 0.803183 | 3.935943e-49 | -8.615850e-47 |
| Msa0170110 | Msa1315110 | -0.806860 | 6.700631e-50 | -8.615850e-47 |
| Msa0170110 | Msa1322190 | -0.809342 | 1.984525e-50 | -8.615850e-47 |
| Msa0170110 | Msa1325860 | 0.867868 | 9.963876e-66 | -8.615850e-47 |
| Msa0170110 | Msa1342100 | -0.813361 | 2.661334e-51 | -8.615850e-47 |
| Msa0170110 | Msa1359630 | -0.805289 | 1.434239e-49 | -8.615850e-47 |
| Msa0170110 | Msa1364330 | 0.856341 | 3.434382e-62 | -8.615850e-47 |
| Msa0170110 | Msa1374470 | -0.802318 | 5.938208e-49 | -8.615850e-47 |
| Msa0170110 | Msa1374710 | -0.813554 | 2.413853e-51 | -8.615850e-47 |
| Msa0170110 | Msa1403340 | -0.847535 | 1.087437e-59 | -8.615850e-47 |
| Msa0170110 | Msa1406110 | 0.810342 | 1.208885e-50 | -8.615850e-47 |
| Msa0170110 | Msa1437910 | -0.815670 | 8.208179e-52 | -8.615850e-47 |
| Msa0170110 | Msa1444250 | 0.815773 | 7.785605e-52 | -8.615850e-47 |
| Msa0170110 | Msa1444740 | -0.839878 | 1.217677e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170110 | MtrunA17_Chr1g0187751 | 99.699 | 332 | 1 | 0 | 1 | 332 | 1 | 332 | 0.0 | 681 |
| Msa0170110 | MtrunA17_Chr1g0167651 | 93.675 | 332 | 21 | 0 | 1 | 332 | 1 | 332 | 0.0 | 623 |
| Msa0170110 | MtrunA17_Chr8g0334691 | 84.091 | 308 | 49 | 0 | 24 | 331 | 1 | 308 | 0.0 | 522 |
| Msa0170110 | MtrunA17_Chr1g0197371 | 39.818 | 329 | 191 | 4 | 3 | 328 | 92 | 416 | 4.64e-74 | 234 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0170110 | AT1G04410.1 | 90.060 | 332 | 33 | 0 | 1 | 332 | 1 | 332 | 0.0 | 605 |
| Msa0170110 | AT5G43330.1 | 89.458 | 332 | 35 | 0 | 1 | 332 | 1 | 332 | 0.0 | 597 |
| Msa0170110 | AT5G56720.1 | 72.590 | 332 | 91 | 0 | 1 | 332 | 40 | 371 | 0.0 | 510 |
| Msa0170110 | AT5G58330.2 | 41.641 | 329 | 185 | 4 | 3 | 328 | 96 | 420 | 5.39e-79 | 248 |
| Msa0170110 | AT5G58330.1 | 41.641 | 329 | 185 | 4 | 3 | 328 | 97 | 421 | 6.03e-79 | 248 |
| Msa0170110 | AT5G58330.3 | 41.587 | 315 | 177 | 4 | 17 | 328 | 2 | 312 | 5.19e-76 | 237 |
Find 121 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCCACTTATTCACTTAA+AGG | 0.174972 | 1_4:+53854390 | None:intergenic |
| TTTGAAAAGTTTATGTCTTC+TGG | 0.178098 | 1_4:-53854497 | Msa0170110:three_prime_UTR |
| GCTGCATTCCCTCTTCTTAA+AGG | 0.234412 | 1_4:-53856732 | Msa0170110:intron |
| TGGAGGATCACGGGCTGGTC+AGG | 0.252087 | 1_4:+53856816 | None:intergenic |
| CAAGTGATGATTTGCATAAA+AGG | 0.260404 | 1_4:+53854597 | None:intergenic |
| ATCACTGAACGGTGTTAAAA+TGG | 0.283888 | 1_4:-53856766 | Msa0170110:CDS |
| TGACAAGATTGGACCATAAC+AGG | 0.286946 | 1_4:-53855629 | Msa0170110:CDS |
| CACATTAGAGATTGGGTTCT+AGG | 0.308508 | 1_4:-53855221 | Msa0170110:CDS |
| CATTTCTTGTTTGACAAGAT+TGG | 0.308718 | 1_4:-53855640 | Msa0170110:CDS |
| ATCAAGGCATTGGTGTTTGC+CGG | 0.326996 | 1_4:+53855699 | None:intergenic |
| TGCAATATCATCAGGGAACC+TGG | 0.363492 | 1_4:-53855107 | Msa0170110:intron |
| TGGAGTCAATATTGCTGTTA+TGG | 0.370670 | 1_4:-53856540 | Msa0170110:CDS |
| CTCTTGTCCCTATGATTGCC+AGG | 0.371373 | 1_4:-53856854 | Msa0170110:CDS |
| AACATTTATCAATAAAATAG+TGG | 0.376516 | 1_4:+53854292 | None:intergenic |
| TTTCCTTGTGTATTTGTCAA+TGG | 0.378788 | 1_4:-53854698 | Msa0170110:three_prime_UTR |
| TATTTGCCATTCGCCATTGC+GGG | 0.380422 | 1_4:+53855011 | None:intergenic |
| ACAGTTGCGTGGTTGACATC+AGG | 0.383245 | 1_4:+53855516 | None:intergenic |
| TGATTGCAGCACCCCGTTGT+TGG | 0.384508 | 1_4:+53855297 | None:intergenic |
| GCATGAAACGACACCGCTTT+CGG | 0.389504 | 1_4:+53857809 | None:intergenic |
| TTTGACCCAGAGCCCTGTTA+TGG | 0.392891 | 1_4:+53855616 | None:intergenic |
| TCGCCATTGCGGGTTGTGAC+AGG | 0.397845 | 1_4:+53855021 | None:intergenic |
| ATCACTCCCCTGGCAATCAT+AGG | 0.399565 | 1_4:+53856846 | None:intergenic |
| GCTTTCTGAGGAGAAGGCTT+TGG | 0.399799 | 1_4:-53854749 | Msa0170110:CDS |
| CTTGTGACCACATTAGAGAT+TGG | 0.400822 | 1_4:-53855229 | Msa0170110:CDS |
| CATAGCTACCGTCCAACAAC+GGG | 0.401578 | 1_4:-53855309 | Msa0170110:CDS |
| AAGTGAATAAGTGGGAAATT+CGG | 0.409072 | 1_4:-53854385 | Msa0170110:three_prime_UTR |
| CACCAATGCCTTGATCTTGA+AGG | 0.415103 | 1_4:-53855691 | Msa0170110:CDS |
| TTTAACACCGTTCAGTGATT+CGG | 0.419237 | 1_4:+53856770 | None:intergenic |
| CACTCCTTTAAGTGAATAAG+TGG | 0.421061 | 1_4:-53854394 | Msa0170110:three_prime_UTR |
| GGCATTGGTGTTTGCCGGGT+TGG | 0.424208 | 1_4:+53855704 | None:intergenic |
| CCTGTTCGTGTTCTTGTCAC+TGG | 0.433814 | 1_4:-53857621 | Msa0170110:CDS |
| CCAGTGACAAGAACACGAAC+AGG | 0.438629 | 1_4:+53857621 | None:intergenic |
| ACTATTTGTCTATTTATTCA+CGG | 0.443103 | 1_4:+53857753 | None:intergenic |
| TTGTGACCACATTAGAGATT+GGG | 0.444343 | 1_4:-53855228 | Msa0170110:CDS |
| CCGTTCAGTGATTCGGCTGC+TGG | 0.450461 | 1_4:+53856777 | None:intergenic |
| TTTCTCAAGAGCAGAAGCTT+GGG | 0.453532 | 1_4:+53856445 | None:intergenic |
| GGAGTGAATTTATAGCCAAC+AGG | 0.454153 | 1_4:+53854411 | None:intergenic |
| GTTTCTCAAGAGCAGAAGCT+TGG | 0.456679 | 1_4:+53856444 | None:intergenic |
| ATTGGACCATAACAGGGCTC+TGG | 0.463189 | 1_4:-53855622 | Msa0170110:CDS |
| AGAGAATATTCTATCTTGCT+TGG | 0.464290 | 1_4:-53857890 | Msa0170110:five_prime_UTR |
| AATACGGAGCATAACTTAGT+TGG | 0.470056 | 1_4:+53854325 | None:intergenic |
| TTCAGTGATTCGGCTGCTGG+TGG | 0.473142 | 1_4:+53856780 | None:intergenic |
| AGATATTGAGAAACTCTTGA+TGG | 0.476838 | 1_4:-53854629 | Msa0170110:three_prime_UTR |
| AATATTGCTGTTATGGTTGG+TGG | 0.480289 | 1_4:-53856533 | Msa0170110:CDS |
| GTCAATATTGCTGTTATGGT+TGG | 0.483183 | 1_4:-53856536 | Msa0170110:CDS |
| TAGTGGTAAAATATCAAATA+CGG | 0.485896 | 1_4:+53854309 | None:intergenic |
| GGAGGATCACGGGCTGGTCA+GGG | 0.487190 | 1_4:+53856817 | None:intergenic |
| AACTCGTGGCTGATGATGCC+TGG | 0.490237 | 1_4:-53855461 | Msa0170110:intron |
| GTTCTTGTCACTGGTGCTGC+AGG | 0.494198 | 1_4:-53857612 | Msa0170110:intron |
| GGCGAATGGCAAATAGTTCA+AGG | 0.495465 | 1_4:-53855003 | Msa0170110:intron |
| TTCCTTCAAGATCAAGGCAT+TGG | 0.495936 | 1_4:+53855689 | None:intergenic |
| TAGTAGTAGCTTTGTATATG+TGG | 0.498784 | 1_4:-53857938 | None:intergenic |
| TGCTACAACTGATGTGGTTG+AGG | 0.500221 | 1_4:-53856570 | Msa0170110:CDS |
| CGCCATTGCGGGTTGTGACA+GGG | 0.503139 | 1_4:+53855022 | None:intergenic |
| AGGGCCGAGCATCACTCCCC+TGG | 0.504498 | 1_4:+53856836 | None:intergenic |
| GGTTCTCGTTGTTGCCAACC+CGG | 0.510041 | 1_4:-53855718 | Msa0170110:CDS |
| CCTTGTGTATTTGTCAATGG+AGG | 0.510190 | 1_4:-53854695 | Msa0170110:three_prime_UTR |
| AGAAGAGCTTTCTGAGGAGA+AGG | 0.511032 | 1_4:-53854755 | Msa0170110:CDS |
| TCAAGGCATTGGTGTTTGCC+GGG | 0.513479 | 1_4:+53855700 | None:intergenic |
| AGCGAATTCCTTCAAGATCA+AGG | 0.519920 | 1_4:+53855683 | None:intergenic |
| TCAGGGAACCTGGGTATCGA+TGG | 0.524300 | 1_4:-53855097 | Msa0170110:intron |
| GGATCTTACAATGTACCTGC+TGG | 0.524735 | 1_4:-53855060 | Msa0170110:CDS |
| GGTGGATTCCCTAGAAAAGA+AGG | 0.528773 | 1_4:-53856515 | Msa0170110:CDS |
| CGGTGTTAAAATGGAGTTGG+TGG | 0.529018 | 1_4:-53856757 | Msa0170110:CDS |
| ATGAGTAGTAGCATTAGCAT+TGG | 0.531126 | 1_4:-53857781 | Msa0170110:five_prime_UTR |
| TCAAGCATGTGGAGGATCAC+GGG | 0.532929 | 1_4:+53856807 | None:intergenic |
| AATTGAGAATTGACAAACAA+TGG | 0.536893 | 1_4:+53854670 | None:intergenic |
| ATTCCCTAGAAAAGAAGGTA+TGG | 0.539427 | 1_4:-53856510 | Msa0170110:CDS |
| TCGATGGGAGTTTATTCTGA+TGG | 0.539461 | 1_4:-53855081 | Msa0170110:CDS |
| GTCAAGCATGTGGAGGATCA+CGG | 0.540541 | 1_4:+53856806 | None:intergenic |
| GGAGCATAACTTAGTTGGTA+AGG | 0.543782 | 1_4:+53854330 | None:intergenic |
| ATATTCTATCTTGCTTGGCA+TGG | 0.544371 | 1_4:-53857885 | Msa0170110:five_prime_UTR |
| TAGCTTTGTATATGTGGATG+AGG | 0.544967 | 1_4:-53857932 | Msa0170110:five_prime_UTR |
| AATGAATAGATTAGTCCAGC+AGG | 0.546223 | 1_4:+53855045 | None:intergenic |
| CAGTTGCGTGGTTGACATCA+GGG | 0.549966 | 1_4:+53855517 | None:intergenic |
| AACTCAAACCTTTAAGAAGA+GGG | 0.552886 | 1_4:+53856724 | None:intergenic |
| TCACTCCCCTGGCAATCATA+GGG | 0.553376 | 1_4:+53856847 | None:intergenic |
| TTGGACCATAACAGGGCTCT+GGG | 0.556375 | 1_4:-53855621 | Msa0170110:CDS |
| TGCAGCACCCCGTTGTTGGA+CGG | 0.557691 | 1_4:+53855301 | None:intergenic |
| CTATTTGCCATTCGCCATTG+CGG | 0.559494 | 1_4:+53855010 | None:intergenic |
| TCACAACCCGCAATGGCGAA+TGG | 0.563222 | 1_4:-53855017 | Msa0170110:CDS |
| GACAGCAGAAGAGCTTTCTG+AGG | 0.563983 | 1_4:-53854761 | Msa0170110:CDS |
| TTCCCTGTCACAACCCGCAA+TGG | 0.564846 | 1_4:-53855024 | Msa0170110:CDS |
| AGGAGATTGCTGATAATAAG+TGG | 0.565114 | 1_4:+53857860 | None:intergenic |
| ATTGCCAGGGGAGTGATGCT+CGG | 0.570606 | 1_4:-53856840 | Msa0170110:CDS |
| CATCATCAGCCACGAGTTCA+CGG | 0.570980 | 1_4:+53855466 | None:intergenic |
| AAACTCAAACCTTTAAGAAG+AGG | 0.571371 | 1_4:+53856723 | None:intergenic |
| TCTTGTCCCTATGATTGCCA+GGG | 0.574263 | 1_4:-53856853 | Msa0170110:CDS |
| GCATGTGGAGGATCACGGGC+TGG | 0.580601 | 1_4:+53856811 | None:intergenic |
| GACATTGCAATATGAGAGGA+CGG | 0.583403 | 1_4:+53854352 | None:intergenic |
| TCAGTGATTCGGCTGCTGGT+GGG | 0.585206 | 1_4:+53856781 | None:intergenic |
| GATGTGGTTGAGGGATGCAC+TGG | 0.588132 | 1_4:-53856560 | Msa0170110:CDS |
| CAGGGAACCTGGGTATCGAT+GGG | 0.588520 | 1_4:-53855096 | Msa0170110:CDS |
| GTGGTCACAAGCAGCGCTAG+CGG | 0.592624 | 1_4:+53855241 | None:intergenic |
| GCTACAACTGATGTGGTTGA+GGG | 0.594490 | 1_4:-53856569 | Msa0170110:CDS |
| CTAATGCTACTACTCATGAA+AGG | 0.596142 | 1_4:+53857787 | None:intergenic |
| GACAAGATTGGACCATAACA+GGG | 0.599626 | 1_4:-53855628 | Msa0170110:CDS |
| ATTGAGAAACTCTTGATGGA+TGG | 0.603828 | 1_4:-53854625 | Msa0170110:three_prime_UTR |
| ATAAACTCCCATCGATACCC+AGG | 0.604419 | 1_4:+53855089 | None:intergenic |
| CTGGTGGGATGTCAAGCATG+TGG | 0.608538 | 1_4:+53856796 | None:intergenic |
| CAGGGTACTGACTTGATGAA+TGG | 0.610269 | 1_4:+53855535 | None:intergenic |
| CTAGAACCCAATCTCTAATG+TGG | 0.612432 | 1_4:+53855222 | None:intergenic |
| TCATAGCTACCGTCCAACAA+CGG | 0.613333 | 1_4:-53855310 | Msa0170110:CDS |
| TGTTGTTGCTACAACTGATG+TGG | 0.615089 | 1_4:-53856576 | Msa0170110:CDS |
| TCAGCCACGAGTTCACGGAC+AGG | 0.623183 | 1_4:+53855471 | None:intergenic |
| ACATGCTGCTGCAAACTGCA+AGG | 0.624025 | 1_4:-53856423 | Msa0170110:intron |
| GCAATATCATCAGGGAACCT+GGG | 0.624982 | 1_4:-53855106 | Msa0170110:intron |
| AATAATAGAGGAACCGAAAG+CGG | 0.626618 | 1_4:-53857822 | Msa0170110:five_prime_UTR |
| ACTCCTTTAAGTGAATAAGT+GGG | 0.630424 | 1_4:-53854393 | Msa0170110:three_prime_UTR |
| GAACGGTGTTAAAATGGAGT+TGG | 0.636523 | 1_4:-53856760 | Msa0170110:CDS |
| AAAGCCTGTCCGTGAACTCG+TGG | 0.642217 | 1_4:-53855475 | Msa0170110:CDS |
| TTGGGTTCTAGGAACTCCTG+AGG | 0.644314 | 1_4:-53855210 | Msa0170110:intron |
| GGAAACAAGCTGTCTAAGAG+AGG | 0.644922 | 1_4:+53854716 | None:intergenic |
| CCTCCATTGACAAATACACA+AGG | 0.650568 | 1_4:+53854695 | None:intergenic |
| CTTGTCCCTATGATTGCCAG+GGG | 0.651791 | 1_4:-53856852 | Msa0170110:CDS |
| CCAGCAGCCGAATCACTGAA+CGG | 0.657663 | 1_4:-53856777 | Msa0170110:CDS |
| CTAGAAAAGAAGGTATGGAG+AGG | 0.663254 | 1_4:-53856505 | Msa0170110:CDS |
| TAAGGACATTGCAATATGAG+AGG | 0.667005 | 1_4:+53854348 | None:intergenic |
| GTGGGATGTCAAGCATGTGG+AGG | 0.682561 | 1_4:+53856799 | None:intergenic |
| CAGTGACAAGAACACGAACA+GGG | 0.694789 | 1_4:+53857622 | None:intergenic |
| ATAGCTACCGTCCAACAACG+GGG | 0.807747 | 1_4:-53855308 | Msa0170110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATTATTATTATTTAA+AGG | + | chr1_4:53854367-53854386 | None:intergenic | 0.0% |
| !! | TTTAATTCAAATTCTTTATA+TGG | - | chr1_4:53857038-53857057 | Msa0170110:intron | 10.0% |
| !! | AGAAAATTGCATAATAATAA+AGG | + | chr1_4:53854939-53854958 | None:intergenic | 15.0% |
| !! | ATTTCTATATCAAAAGTTAT+TGG | + | chr1_4:53855150-53855169 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTGACATAAAATG+CGG | + | chr1_4:53855867-53855886 | None:intergenic | 15.0% |
| !! | ACAACTTAATTAAATTAGTA+TGG | + | chr1_4:53856169-53856188 | None:intergenic | 15.0% |
| !!! | TACTAATTTAATTAAGTTGT+TGG | - | chr1_4:53856169-53856188 | Msa0170110:intron | 15.0% |
| !! | ATGTGAAAAATGTTATAATT+TGG | - | chr1_4:53856641-53856660 | Msa0170110:intron | 15.0% |
| !! | TGTGAAAAATGTTATAATTT+GGG | - | chr1_4:53856642-53856661 | Msa0170110:intron | 15.0% |
| !!! | ATATTTTGATAAGTTATTAC+TGG | - | chr1_4:53857226-53857245 | Msa0170110:intron | 15.0% |
| !!! | TTGTTTTATATAGCAAATAA+AGG | - | chr1_4:53857327-53857346 | Msa0170110:intron | 15.0% |
| !! | AACATTTATCAATAAAATAG+TGG | + | chr1_4:53857915-53857934 | None:intergenic | 15.0% |
| !! | ACTATTTGTCTATTTATTCA+CGG | + | chr1_4:53854454-53854473 | None:intergenic | 20.0% |
| !! | AGGAACTAATAAAAAAAAGA+TGG | + | chr1_4:53854621-53854640 | None:intergenic | 20.0% |
| !! | AGTTCCTTCATAATAAATTA+TGG | - | chr1_4:53854634-53854653 | Msa0170110:three_prime_UTR | 20.0% |
| !! | GTTCCTTCATAATAAATTAT+GGG | - | chr1_4:53854635-53854654 | Msa0170110:three_prime_UTR | 20.0% |
| !! | AAACCCATAATTTATTATGA+AGG | + | chr1_4:53854641-53854660 | None:intergenic | 20.0% |
| !!! | GTTTTGTTTTGTTTTGTTTA+AGG | - | chr1_4:53854678-53854697 | Msa0170110:three_prime_UTR | 20.0% |
| !! | TTTAGAAATAGAACTATGTT+TGG | - | chr1_4:53854775-53854794 | Msa0170110:CDS | 20.0% |
| !!! | GTAAACATTTTAACCATATT+TGG | + | chr1_4:53855237-53855256 | None:intergenic | 20.0% |
| !! | ATTTCAACATAAAATCTTTG+AGG | - | chr1_4:53855271-53855290 | Msa0170110:CDS | 20.0% |
| !!! | AAAAATGTTTTGCCAATTTT+AGG | - | chr1_4:53855313-53855332 | Msa0170110:CDS | 20.0% |
| !! | TTGTGAAAATTATTTGTTTC+AGG | - | chr1_4:53855605-53855624 | Msa0170110:CDS | 20.0% |
| !! | AAAAAATATGTTCCATTCTA+TGG | - | chr1_4:53855880-53855899 | Msa0170110:intron | 20.0% |
| !!! | TAGTCCTTTTTACATATTTT+TGG | - | chr1_4:53856403-53856422 | Msa0170110:intron | 20.0% |
| !! | GTTTCCAAAAATATGTAAAA+AGG | + | chr1_4:53856410-53856429 | None:intergenic | 20.0% |
| !! | GTGAAAAATGTTATAATTTG+GGG | - | chr1_4:53856643-53856662 | Msa0170110:intron | 20.0% |
| !!! | ATTTGTCTAATTTTTTAACC+AGG | - | chr1_4:53857381-53857400 | Msa0170110:intron | 20.0% |
| !!! | TCAATTCTCAATTTTGAATA+AGG | - | chr1_4:53857544-53857563 | Msa0170110:intron | 20.0% |
| !!! | GACTCTTTGTTTTTTTTTTT+TGG | - | chr1_4:53857762-53857781 | Msa0170110:five_prime_UTR | 20.0% |
| !! | TAGTGGTAAAATATCAAATA+CGG | + | chr1_4:53857898-53857917 | None:intergenic | 20.0% |
| !! | TTGTTCTTTTTAGATCAAAG+AGG | + | chr1_4:53854552-53854571 | None:intergenic | 25.0% |
| ! | CTTTGATCTAAAAAGAACAA+TGG | - | chr1_4:53854552-53854571 | Msa0170110:three_prime_UTR | 25.0% |
| ! | ATAGGGAAATACTATAATTG+AGG | + | chr1_4:53854971-53854990 | None:intergenic | 25.0% |
| ! | TTTCATAAGTTATCATAGAG+AGG | + | chr1_4:53855058-53855077 | None:intergenic | 25.0% |
| ! | TGAAGTTGTTTATCCAAATA+TGG | - | chr1_4:53855221-53855240 | Msa0170110:CDS | 25.0% |
| ! | TATCCAATTTGTCCTAAAAT+TGG | + | chr1_4:53855328-53855347 | None:intergenic | 25.0% |
| !! | TAAATGTTACTTGAACTTCT+TGG | - | chr1_4:53855514-53855533 | Msa0170110:CDS | 25.0% |
| ! | AAATGCTTTGCAAGATTAAA+AGG | - | chr1_4:53855580-53855599 | Msa0170110:CDS | 25.0% |
| ! | TGAAAGAGATACATGAAAAA+GGG | + | chr1_4:53855916-53855935 | None:intergenic | 25.0% |
| ! | AACTAAAATAAATTCAGTGC+AGG | + | chr1_4:53856268-53856287 | None:intergenic | 25.0% |
| !!! | ATGTGTATTTTGGTCATATA+TGG | - | chr1_4:53856322-53856341 | Msa0170110:intron | 25.0% |
| ! | ACAGAGTTTAAAGAAATGTA+AGG | + | chr1_4:53856455-53856474 | None:intergenic | 25.0% |
| !! | AAACAAGAAATGTTTTTCTC+AGG | + | chr1_4:53856556-53856575 | None:intergenic | 25.0% |
| ! | ATACTTCAGTAAATGCAAAA+TGG | + | chr1_4:53856838-53856857 | None:intergenic | 25.0% |
| !! | TTTTCATTGCAATATCATCA+GGG | - | chr1_4:53857090-53857109 | Msa0170110:intron | 25.0% |
| !!! | TCCGTCTTTTATTTGTATTA+AGG | - | chr1_4:53857299-53857318 | Msa0170110:intron | 25.0% |
| ! | GCCTTAATACAAATAAAAGA+CGG | + | chr1_4:53857303-53857322 | None:intergenic | 25.0% |
| !! | TTTCAATTGATGAGTTTTCA+AGG | - | chr1_4:53857406-53857425 | Msa0170110:intron | 25.0% |
| !!! | TGAGTTTTCAAGGAAAAAAT+TGG | - | chr1_4:53857416-53857435 | Msa0170110:intron | 25.0% |
| ! | AATTGAGAATTGACAAACAA+TGG | + | chr1_4:53857537-53857556 | None:intergenic | 25.0% |
| ! | TTTGAAAAGTTTATGTCTTC+TGG | - | chr1_4:53857707-53857726 | Msa0170110:five_prime_UTR | 25.0% |
| AGAGAATATTCTATCTTGCT+TGG | - | chr1_4:53854314-53854333 | Msa0170110:three_prime_UTR | 30.0% | |
| CAATCAAGAAACATGATACA+AGG | + | chr1_4:53854749-53854768 | None:intergenic | 30.0% | |
| CTTGTATCATGTTTCTTGAT+TGG | - | chr1_4:53854747-53854766 | Msa0170110:CDS | 30.0% | |
| TCTATAAACTCTCACAGATA+GGG | + | chr1_4:53854988-53855007 | None:intergenic | 30.0% | |
| TTCTATAAACTCTCACAGAT+AGG | + | chr1_4:53854989-53855008 | None:intergenic | 30.0% | |
| AAGTTATCATAGAGAGGTTA+TGG | + | chr1_4:53855052-53855071 | None:intergenic | 30.0% | |
| !!! | TTGCCAATTTTAGGACAAAT+TGG | - | chr1_4:53855322-53855341 | Msa0170110:CDS | 30.0% |
| ! | AACTCAAACCTTTAAGAAGA+GGG | + | chr1_4:53855483-53855502 | None:intergenic | 30.0% |
| ! | AAACTCAAACCTTTAAGAAG+AGG | + | chr1_4:53855484-53855503 | None:intergenic | 30.0% |
| AAAGAGATACATGAAAAAGG+GGG | + | chr1_4:53855914-53855933 | None:intergenic | 30.0% | |
| GAAAGAGATACATGAAAAAG+GGG | + | chr1_4:53855915-53855934 | None:intergenic | 30.0% | |
| CTGAAAGAGATACATGAAAA+AGG | + | chr1_4:53855917-53855936 | None:intergenic | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | + | chr1_4:53855941-53855960 | None:intergenic | 30.0% | |
| ! | TTGTCATAGTTTTTGTGTGA+TGG | - | chr1_4:53856217-53856236 | Msa0170110:intron | 30.0% |
| ! | TTAGTTTAGTGCTGAAAAAG+TGG | - | chr1_4:53856282-53856301 | Msa0170110:intron | 30.0% |
| ! | AGAAATGTTTTTCTCAGGAA+TGG | + | chr1_4:53856551-53856570 | None:intergenic | 30.0% |
| ! | CATTTCTTGTTTGACAAGAT+TGG | - | chr1_4:53856564-53856583 | Msa0170110:CDS | 30.0% |
| ! | TGATGTAATTTTCATCGTCA+AGG | - | chr1_4:53856858-53856877 | Msa0170110:CDS | 30.0% |
| ! | TTTTCATCGTCAAGGTTAAA+TGG | - | chr1_4:53856866-53856885 | Msa0170110:CDS | 30.0% |
| ATATGGAATGACTTCAACTA+AGG | - | chr1_4:53857055-53857074 | Msa0170110:intron | 30.0% | |
| ! | CTTTTCATTGCAATATCATC+AGG | - | chr1_4:53857089-53857108 | Msa0170110:intron | 30.0% |
| TTTCCTTGTGTATTTGTCAA+TGG | - | chr1_4:53857506-53857525 | Msa0170110:intron | 30.0% | |
| AGATATTGAGAAACTCTTGA+TGG | - | chr1_4:53857575-53857594 | Msa0170110:intron | 30.0% | |
| ! | CAAGTGATGATTTGCATAAA+AGG | + | chr1_4:53857610-53857629 | None:intergenic | 30.0% |
| ! | AGACATAAACTTTTCAAACG+CGG | + | chr1_4:53857705-53857724 | None:intergenic | 30.0% |
| ACTCCTTTAAGTGAATAAGT+GGG | - | chr1_4:53857811-53857830 | Msa0170110:five_prime_UTR | 30.0% | |
| TTTCCCACTTATTCACTTAA+AGG | + | chr1_4:53857817-53857836 | None:intergenic | 30.0% | |
| AAGTGAATAAGTGGGAAATT+CGG | - | chr1_4:53857819-53857838 | Msa0170110:five_prime_UTR | 30.0% | |
| ATATTCTATCTTGCTTGGCA+TGG | - | chr1_4:53854319-53854338 | Msa0170110:three_prime_UTR | 35.0% | |
| AGGAGATTGCTGATAATAAG+TGG | + | chr1_4:53854347-53854366 | None:intergenic | 35.0% | |
| AATAATAGAGGAACCGAAAG+CGG | - | chr1_4:53854382-53854401 | Msa0170110:three_prime_UTR | 35.0% | |
| CTAATGCTACTACTCATGAA+AGG | + | chr1_4:53854420-53854439 | None:intergenic | 35.0% | |
| ATGAGTAGTAGCATTAGCAT+TGG | - | chr1_4:53854423-53854442 | Msa0170110:three_prime_UTR | 35.0% | |
| TTTAACACCGTTCAGTGATT+CGG | + | chr1_4:53855437-53855456 | None:intergenic | 35.0% | |
| ! | ATCACTGAACGGTGTTAAAA+TGG | - | chr1_4:53855438-53855457 | Msa0170110:intron | 35.0% |
| CCAACTTCAAACCAGAAATA+TGG | + | chr1_4:53855544-53855563 | None:intergenic | 35.0% | |
| !! | CCATATTTCTGGTTTGAAGT+TGG | - | chr1_4:53855541-53855560 | Msa0170110:CDS | 35.0% |
| ! | TGGAGTCAATATTGCTGTTA+TGG | - | chr1_4:53855664-53855683 | Msa0170110:CDS | 35.0% |
| ! | GTCAATATTGCTGTTATGGT+TGG | - | chr1_4:53855668-53855687 | Msa0170110:CDS | 35.0% |
| ! | AATATTGCTGTTATGGTTGG+TGG | - | chr1_4:53855671-53855690 | Msa0170110:CDS | 35.0% |
| ATTCCCTAGAAAAGAAGGTA+TGG | - | chr1_4:53855694-53855713 | Msa0170110:CDS | 35.0% | |
| ! | TCTCCATACCTTCTTTTCTA+GGG | + | chr1_4:53855700-53855719 | None:intergenic | 35.0% |
| GCTTGAGCATTCAGAATTAA+AGG | + | chr1_4:53855811-53855830 | None:intergenic | 35.0% | |
| CTTATTTCCATAAGCTCTAC+AGG | - | chr1_4:53856050-53856069 | Msa0170110:intron | 35.0% | |
| ATTCAGTGCAGGTAATGTAT+TGG | + | chr1_4:53856257-53856276 | None:intergenic | 35.0% | |
| !! | TGGTTGGTTCATGTGTATTT+TGG | - | chr1_4:53856312-53856331 | Msa0170110:intron | 35.0% |
| AGAAACAGATTTCACCAGAA+TGG | + | chr1_4:53856364-53856383 | None:intergenic | 35.0% | |
| ! | ATGTTTTTCTCAGGAATGGA+TGG | + | chr1_4:53856547-53856566 | None:intergenic | 35.0% |
| TATTTGTCCATCAACATACC+AGG | + | chr1_4:53856764-53856783 | None:intergenic | 35.0% | |
| TTGTGACCACATTAGAGATT+GGG | - | chr1_4:53856976-53856995 | Msa0170110:intron | 35.0% | |
| ! | AATGAATAGATTAGTCCAGC+AGG | + | chr1_4:53857162-53857181 | None:intergenic | 35.0% |
| AACTCATCAATTGAAAGTCC+TGG | + | chr1_4:53857402-53857421 | None:intergenic | 35.0% | |
| ATTGAGAAACTCTTGATGGA+TGG | - | chr1_4:53857579-53857598 | Msa0170110:intron | 35.0% | |
| !! | TTTTTGGCGAATTAACCTGT+TGG | - | chr1_4:53857778-53857797 | Msa0170110:five_prime_UTR | 35.0% |
| CACTCCTTTAAGTGAATAAG+TGG | - | chr1_4:53857810-53857829 | Msa0170110:five_prime_UTR | 35.0% | |
| TAAGGACATTGCAATATGAG+AGG | + | chr1_4:53857859-53857878 | None:intergenic | 35.0% | |
| AATACGGAGCATAACTTAGT+TGG | + | chr1_4:53857882-53857901 | None:intergenic | 35.0% | |
| ! | GAACGGTGTTAAAATGGAGT+TGG | - | chr1_4:53855444-53855463 | Msa0170110:intron | 40.0% |
| TTCTTGGACAGCCATATTTC+TGG | - | chr1_4:53855530-53855549 | Msa0170110:CDS | 40.0% | |
| ! | GGTTTGAAGTTGGATTGTGT+TGG | - | chr1_4:53855551-53855570 | Msa0170110:CDS | 40.0% |
| TGTTGTTGCTACAACTGATG+TGG | - | chr1_4:53855628-53855647 | Msa0170110:CDS | 40.0% | |
| ! | CTCTCCATACCTTCTTTTCT+AGG | + | chr1_4:53855701-53855720 | None:intergenic | 40.0% |
| ! | CTAGAAAAGAAGGTATGGAG+AGG | - | chr1_4:53855699-53855718 | Msa0170110:CDS | 40.0% |
| TTTCTCAAGAGCAGAAGCTT+GGG | + | chr1_4:53855762-53855781 | None:intergenic | 40.0% | |
| GTATCTCTTTCAGACCTGTT+TGG | - | chr1_4:53855924-53855943 | Msa0170110:intron | 40.0% | |
| AAGCTATCCTGTAGAGCTTA+TGG | + | chr1_4:53856060-53856079 | None:intergenic | 40.0% | |
| AAAAAGTGGTTCCATCTGGT+TGG | - | chr1_4:53856296-53856315 | Msa0170110:intron | 40.0% | |
| ATACACATGAACCAACCAGA+TGG | + | chr1_4:53856310-53856329 | None:intergenic | 40.0% | |
| AAGTCCTTGTGATTCCATTC+TGG | - | chr1_4:53856347-53856366 | Msa0170110:intron | 40.0% | |
| TTCACCAGAATGGAATCACA+AGG | + | chr1_4:53856354-53856373 | None:intergenic | 40.0% | |
| TAAACTCTGTATCACCATGC+AGG | - | chr1_4:53856465-53856484 | Msa0170110:CDS | 40.0% | |
| TTCCTTCAAGATCAAGGCAT+TGG | + | chr1_4:53856518-53856537 | None:intergenic | 40.0% | |
| AGCGAATTCCTTCAAGATCA+AGG | + | chr1_4:53856524-53856543 | None:intergenic | 40.0% | |
| TGACAAGATTGGACCATAAC+AGG | - | chr1_4:53856575-53856594 | Msa0170110:CDS | 40.0% | |
| GACAAGATTGGACCATAACA+GGG | - | chr1_4:53856576-53856595 | Msa0170110:CDS | 40.0% | |
| !! | AAGCGATTTTAACAGTTGCG+TGG | + | chr1_4:53856702-53856721 | None:intergenic | 40.0% |
| CTTGTGACCACATTAGAGAT+TGG | - | chr1_4:53856975-53856994 | Msa0170110:intron | 40.0% | |
| CTAGAACCCAATCTCTAATG+TGG | + | chr1_4:53856985-53857004 | None:intergenic | 40.0% | |
| CACATTAGAGATTGGGTTCT+AGG | - | chr1_4:53856983-53857002 | Msa0170110:intron | 40.0% | |
| TCGATGGGAGTTTATTCTGA+TGG | - | chr1_4:53857123-53857142 | Msa0170110:intron | 40.0% | |
| CCTCCATTGACAAATACACA+AGG | + | chr1_4:53857512-53857531 | None:intergenic | 40.0% | |
| CCTTGTGTATTTGTCAATGG+AGG | - | chr1_4:53857509-53857528 | Msa0170110:intron | 40.0% | |
| GGAGTGAATTTATAGCCAAC+AGG | + | chr1_4:53857796-53857815 | None:intergenic | 40.0% | |
| GACATTGCAATATGAGAGGA+CGG | + | chr1_4:53857855-53857874 | None:intergenic | 40.0% | |
| ! | GGAGCATAACTTAGTTGGTA+AGG | + | chr1_4:53857877-53857896 | None:intergenic | 40.0% |
| CAGTGACAAGAACACGAACA+GGG | + | chr1_4:53854585-53854604 | None:intergenic | 45.0% | |
| TCTTGTCCCTATGATTGCCA+GGG | - | chr1_4:53855351-53855370 | Msa0170110:intron | 45.0% | |
| ! | CGGTGTTAAAATGGAGTTGG+TGG | - | chr1_4:53855447-53855466 | Msa0170110:intron | 45.0% |
| GCTGCATTCCCTCTTCTTAA+AGG | - | chr1_4:53855472-53855491 | Msa0170110:CDS | 45.0% | |
| TGCTACAACTGATGTGGTTG+AGG | - | chr1_4:53855634-53855653 | Msa0170110:CDS | 45.0% | |
| GCTACAACTGATGTGGTTGA+GGG | - | chr1_4:53855635-53855654 | Msa0170110:CDS | 45.0% | |
| ! | GGTGGATTCCCTAGAAAAGA+AGG | - | chr1_4:53855689-53855708 | Msa0170110:CDS | 45.0% |
| GTTTCTCAAGAGCAGAAGCT+TGG | + | chr1_4:53855763-53855782 | None:intergenic | 45.0% | |
| ATACATGAAAAAGGGGGAGG+AGG | + | chr1_4:53855908-53855927 | None:intergenic | 45.0% | |
| GAGATACATGAAAAAGGGGG+AGG | + | chr1_4:53855911-53855930 | None:intergenic | 45.0% | |
| GTCTCACAAGTGCTTGCTTA+TGG | + | chr1_4:53855976-53855995 | None:intergenic | 45.0% | |
| AAGCACTTGTGAGACTGCTT+GGG | - | chr1_4:53855981-53856000 | Msa0170110:intron | 45.0% | |
| GCTGAAAAAGTGGTTCCATC+TGG | - | chr1_4:53856292-53856311 | Msa0170110:intron | 45.0% | |
| !! | ATCAAGGCATTGGTGTTTGC+CGG | + | chr1_4:53856508-53856527 | None:intergenic | 45.0% |
| CACCAATGCCTTGATCTTGA+AGG | - | chr1_4:53856513-53856532 | Msa0170110:CDS | 45.0% | |
| !! | CAGGGTACTGACTTGATGAA+TGG | + | chr1_4:53856672-53856691 | None:intergenic | 45.0% |
| GATGATGCCTGGTATGTTGA+TGG | - | chr1_4:53856754-53856773 | Msa0170110:CDS | 45.0% | |
| TCATAGCTACCGTCCAACAA+CGG | - | chr1_4:53856894-53856913 | Msa0170110:intron | 45.0% | |
| AGCAAGACATAACCAACCTC+AGG | + | chr1_4:53857013-53857032 | None:intergenic | 45.0% | |
| TGCAATATCATCAGGGAACC+TGG | - | chr1_4:53857097-53857116 | Msa0170110:intron | 45.0% | |
| GCAATATCATCAGGGAACCT+GGG | - | chr1_4:53857098-53857117 | Msa0170110:intron | 45.0% | |
| ATAAACTCCCATCGATACCC+AGG | + | chr1_4:53857118-53857137 | None:intergenic | 45.0% | |
| GGATCTTACAATGTACCTGC+TGG | - | chr1_4:53857144-53857163 | Msa0170110:intron | 45.0% | |
| TATTTGCCATTCGCCATTGC+GGG | + | chr1_4:53857196-53857215 | None:intergenic | 45.0% | |
| CTATTTGCCATTCGCCATTG+CGG | + | chr1_4:53857197-53857216 | None:intergenic | 45.0% | |
| GGCGAATGGCAAATAGTTCA+AGG | - | chr1_4:53857201-53857220 | Msa0170110:intron | 45.0% | |
| ! | AGAAGAGCTTTCTGAGGAGA+AGG | - | chr1_4:53857449-53857468 | Msa0170110:intron | 45.0% |
| GGAAACAAGCTGTCTAAGAG+AGG | + | chr1_4:53857491-53857510 | None:intergenic | 45.0% | |
| !! | AATAATAATAATAATAATAG+AGG | - | chr1_4:53854370-53854389 | Msa0170110:three_prime_UTR | 5.0% |
| GCATGAAACGACACCGCTTT+CGG | + | chr1_4:53854398-53854417 | None:intergenic | 50.0% | |
| CCAGTGACAAGAACACGAAC+AGG | + | chr1_4:53854586-53854605 | None:intergenic | 50.0% | |
| CCTGTTCGTGTTCTTGTCAC+TGG | - | chr1_4:53854583-53854602 | Msa0170110:three_prime_UTR | 50.0% | |
| CTCTTGTCCCTATGATTGCC+AGG | - | chr1_4:53855350-53855369 | Msa0170110:intron | 50.0% | |
| CTTGTCCCTATGATTGCCAG+GGG | - | chr1_4:53855352-53855371 | Msa0170110:intron | 50.0% | |
| TCACTCCCCTGGCAATCATA+GGG | + | chr1_4:53855360-53855379 | None:intergenic | 50.0% | |
| ATCACTCCCCTGGCAATCAT+AGG | + | chr1_4:53855361-53855380 | None:intergenic | 50.0% | |
| TCAAGCATGTGGAGGATCAC+GGG | + | chr1_4:53855400-53855419 | None:intergenic | 50.0% | |
| GTCAAGCATGTGGAGGATCA+CGG | + | chr1_4:53855401-53855420 | None:intergenic | 50.0% | |
| ACATGCTGCTGCAAACTGCA+AGG | - | chr1_4:53855781-53855800 | Msa0170110:intron | 50.0% | |
| CAAGCACTTGTGAGACTGCT+TGG | - | chr1_4:53855980-53855999 | Msa0170110:intron | 50.0% | |
| !! | TCAAGGCATTGGTGTTTGCC+GGG | + | chr1_4:53856507-53856526 | None:intergenic | 50.0% |
| ATTGGACCATAACAGGGCTC+TGG | - | chr1_4:53856582-53856601 | Msa0170110:intron | 50.0% | |
| TTGGACCATAACAGGGCTCT+GGG | - | chr1_4:53856583-53856602 | Msa0170110:intron | 50.0% | |
| TTTGACCCAGAGCCCTGTTA+TGG | + | chr1_4:53856591-53856610 | None:intergenic | 50.0% | |
| CAGTTGCGTGGTTGACATCA+GGG | + | chr1_4:53856690-53856709 | None:intergenic | 50.0% | |
| ACAGTTGCGTGGTTGACATC+AGG | + | chr1_4:53856691-53856710 | None:intergenic | 50.0% | |
| CATCATCAGCCACGAGTTCA+CGG | + | chr1_4:53856741-53856760 | None:intergenic | 50.0% | |
| CATAGCTACCGTCCAACAAC+GGG | - | chr1_4:53856895-53856914 | Msa0170110:intron | 50.0% | |
| ATAGCTACCGTCCAACAACG+GGG | - | chr1_4:53856896-53856915 | Msa0170110:intron | 50.0% | |
| !! | TTGGGTTCTAGGAACTCCTG+AGG | - | chr1_4:53856994-53857013 | Msa0170110:intron | 50.0% |
| !! | GTTCTAGGAACTCCTGAGGT+TGG | - | chr1_4:53856998-53857017 | Msa0170110:intron | 50.0% |
| GACAGCAGAAGAGCTTTCTG+AGG | - | chr1_4:53857443-53857462 | Msa0170110:intron | 50.0% | |
| ! | GCTTTCTGAGGAGAAGGCTT+TGG | - | chr1_4:53857455-53857474 | Msa0170110:intron | 50.0% |
| !! | GTTCTTGTCACTGGTGCTGC+AGG | - | chr1_4:53854592-53854611 | Msa0170110:three_prime_UTR | 55.0% |
| ATTGCCAGGGGAGTGATGCT+CGG | - | chr1_4:53855364-53855383 | Msa0170110:intron | 55.0% | |
| GTGGGATGTCAAGCATGTGG+AGG | + | chr1_4:53855408-53855427 | None:intergenic | 55.0% | |
| CTGGTGGGATGTCAAGCATG+TGG | + | chr1_4:53855411-53855430 | None:intergenic | 55.0% | |
| ! | TCAGTGATTCGGCTGCTGGT+GGG | + | chr1_4:53855426-53855445 | None:intergenic | 55.0% |
| ! | TTCAGTGATTCGGCTGCTGG+TGG | + | chr1_4:53855427-53855446 | None:intergenic | 55.0% |
| CCAGCAGCCGAATCACTGAA+CGG | - | chr1_4:53855427-53855446 | Msa0170110:intron | 55.0% | |
| GATGTGGTTGAGGGATGCAC+TGG | - | chr1_4:53855644-53855663 | Msa0170110:CDS | 55.0% | |
| GGGGAGGAGGAACCATAGAA+TGG | + | chr1_4:53855895-53855914 | None:intergenic | 55.0% | |
| AGACTGCTTGGGAGAGCTCA+TGG | - | chr1_4:53855992-53856011 | Msa0170110:intron | 55.0% | |
| GGCAACAACGAGAACCTGCA+TGG | + | chr1_4:53856482-53856501 | None:intergenic | 55.0% | |
| GGTTCTCGTTGTTGCCAACC+CGG | - | chr1_4:53856486-53856505 | Msa0170110:CDS | 55.0% | |
| AAAGCCTGTCCGTGAACTCG+TGG | - | chr1_4:53856729-53856748 | Msa0170110:intron | 55.0% | |
| ! | AACTCGTGGCTGATGATGCC+TGG | - | chr1_4:53856743-53856762 | Msa0170110:CDS | 55.0% |
| TGATTGCAGCACCCCGTTGT+TGG | + | chr1_4:53856910-53856929 | None:intergenic | 55.0% | |
| !! | TCAGGGAACCTGGGTATCGA+TGG | - | chr1_4:53857107-53857126 | Msa0170110:intron | 55.0% |
| !! | CAGGGAACCTGGGTATCGAT+GGG | - | chr1_4:53857108-53857127 | Msa0170110:intron | 55.0% |
| TTCCCTGTCACAACCCGCAA+TGG | - | chr1_4:53857180-53857199 | Msa0170110:intron | 55.0% | |
| TCACAACCCGCAATGGCGAA+TGG | - | chr1_4:53857187-53857206 | Msa0170110:intron | 55.0% | |
| ! | CCGTTCAGTGATTCGGCTGC+TGG | + | chr1_4:53855430-53855449 | None:intergenic | 60.0% |
| !! | GGCATTGGTGTTTGCCGGGT+TGG | + | chr1_4:53856503-53856522 | None:intergenic | 60.0% |
| TCAGCCACGAGTTCACGGAC+AGG | + | chr1_4:53856736-53856755 | None:intergenic | 60.0% | |
| TGCAGCACCCCGTTGTTGGA+CGG | + | chr1_4:53856906-53856925 | None:intergenic | 60.0% | |
| GTGGTCACAAGCAGCGCTAG+CGG | + | chr1_4:53856966-53856985 | None:intergenic | 60.0% | |
| ! | CGCCATTGCGGGTTGTGACA+GGG | + | chr1_4:53857185-53857204 | None:intergenic | 60.0% |
| ! | TCGCCATTGCGGGTTGTGAC+AGG | + | chr1_4:53857186-53857205 | None:intergenic | 60.0% |
| !! | GGAGGATCACGGGCTGGTCA+GGG | + | chr1_4:53855390-53855409 | None:intergenic | 65.0% |
| !! | TGGAGGATCACGGGCTGGTC+AGG | + | chr1_4:53855391-53855410 | None:intergenic | 65.0% |
| GCATGTGGAGGATCACGGGC+TGG | + | chr1_4:53855396-53855415 | None:intergenic | 65.0% | |
| AGGGCCGAGCATCACTCCCC+TGG | + | chr1_4:53855371-53855390 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 53854274 | 53857952 | 53854274 | ID=Msa0170110;Name=Msa0170110 |
| chr1_4 | mRNA | 53854274 | 53857952 | 53854274 | ID=Msa0170110-mRNA-1;Parent=Msa0170110;Name=Msa0170110-mRNA-1;_AED=0.01;_eAED=0.01;_QI=297|1|1|1|1|1|7|455|332 |
| chr1_4 | exon | 53854274 | 53854823 | 53854274 | ID=Msa0170110-mRNA-1:exon:16024;Parent=Msa0170110-mRNA-1 |
| chr1_4 | exon | 53855004 | 53855115 | 53855004 | ID=Msa0170110-mRNA-1:exon:16023;Parent=Msa0170110-mRNA-1 |
| chr1_4 | exon | 53855211 | 53855346 | 53855211 | ID=Msa0170110-mRNA-1:exon:16022;Parent=Msa0170110-mRNA-1 |
| chr1_4 | exon | 53855462 | 53855739 | 53855462 | ID=Msa0170110-mRNA-1:exon:16021;Parent=Msa0170110-mRNA-1 |
| chr1_4 | exon | 53856424 | 53856599 | 53856424 | ID=Msa0170110-mRNA-1:exon:16020;Parent=Msa0170110-mRNA-1 |
| chr1_4 | exon | 53856733 | 53856891 | 53856733 | ID=Msa0170110-mRNA-1:exon:16019;Parent=Msa0170110-mRNA-1 |
| chr1_4 | exon | 53857613 | 53857952 | 53857613 | ID=Msa0170110-mRNA-1:exon:16018;Parent=Msa0170110-mRNA-1 |
| chr1_4 | five_prime_UTR | 53857656 | 53857952 | 53857656 | ID=Msa0170110-mRNA-1:five_prime_utr;Parent=Msa0170110-mRNA-1 |
| chr1_4 | CDS | 53857613 | 53857655 | 53857613 | ID=Msa0170110-mRNA-1:cds;Parent=Msa0170110-mRNA-1 |
| chr1_4 | CDS | 53856733 | 53856891 | 53856733 | ID=Msa0170110-mRNA-1:cds;Parent=Msa0170110-mRNA-1 |
| chr1_4 | CDS | 53856424 | 53856599 | 53856424 | ID=Msa0170110-mRNA-1:cds;Parent=Msa0170110-mRNA-1 |
| chr1_4 | CDS | 53855462 | 53855739 | 53855462 | ID=Msa0170110-mRNA-1:cds;Parent=Msa0170110-mRNA-1 |
| chr1_4 | CDS | 53855211 | 53855346 | 53855211 | ID=Msa0170110-mRNA-1:cds;Parent=Msa0170110-mRNA-1 |
| chr1_4 | CDS | 53855004 | 53855115 | 53855004 | ID=Msa0170110-mRNA-1:cds;Parent=Msa0170110-mRNA-1 |
| chr1_4 | CDS | 53854729 | 53854823 | 53854729 | ID=Msa0170110-mRNA-1:cds;Parent=Msa0170110-mRNA-1 |
| chr1_4 | three_prime_UTR | 53854274 | 53854728 | 53854274 | ID=Msa0170110-mRNA-1:three_prime_utr;Parent=Msa0170110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
