AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0517760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0517760 MtrunA17_Chr3g0129641 100.000 377 0 0 1 377 1 377 0.0 783
Msa0517760 MtrunA17_Chr1g0175391 95.756 377 16 0 1 377 1 377 0.0 763
Msa0517760 MtrunA17_Chr7g0223901 96.021 377 15 0 1 377 1 377 0.0 762
Msa0517760 MtrunA17_Chr7g0258721 95.756 377 16 0 1 377 1 377 0.0 761
Msa0517760 MtrunA17_Chr2g0328091 94.960 377 19 0 1 377 1 377 0.0 761
Msa0517760 MtrunA17_Chr6g0448881 95.491 377 17 0 1 377 1 377 0.0 761
Msa0517760 MtrunA17_Chr2g0278591 94.695 377 20 0 1 377 1 377 0.0 754
Msa0517760 MtrunA17_Chr7g0224401 43.799 379 199 3 10 374 7 385 3.02e-121 355
Msa0517760 MtrunA17_Chr8g0361001 37.220 446 207 11 1 376 1 443 1.69e-91 281
Msa0517760 MtrunA17_Chr5g0427591 37.220 446 207 11 1 376 1 443 1.87e-91 281
Msa0517760 MtrunA17_Chr8g0381261 34.474 409 222 8 10 372 10 418 3.32e-72 231
Msa0517760 MtrunA17_Chr3g0089031 37.105 380 213 9 7 377 1 363 1.60e-68 220
Msa0517760 MtrunA17_Chr2g0305361 27.880 434 247 7 8 377 6 437 4.80e-57 192
Msa0517760 MtrunA17_Chr3g0080021 30.976 297 181 9 91 371 179 467 9.82e-40 147
Msa0517760 MtrunA17_Chr8g0369101 32.082 293 172 10 91 366 187 469 3.03e-37 140
Msa0517760 MtrunA17_Chr3g0111971 30.556 252 156 7 9 245 21 268 6.19e-24 103
Msa0517760 MtrunA17_Chr3g0111971 34.426 122 77 2 250 368 586 707 4.81e-16 79.7
Msa0517760 MtrunA17_Chr8g0336071 40.000 95 57 0 105 199 1 95 3.35e-19 82.0
Msa0517760 MtrunA17_Chr8g0336061 39.130 92 43 1 241 319 12 103 3.60e-18 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0517760 AT5G09810.1 98.408 377 6 0 1 377 1 377 0.0 774
Msa0517760 AT3G53750.1 95.491 377 17 0 1 377 1 377 0.0 760
Msa0517760 AT3G53750.2 95.491 377 17 0 1 377 1 377 0.0 760
Msa0517760 AT2G37620.1 95.491 377 17 0 1 377 1 377 0.0 760
Msa0517760 AT2G37620.3 95.491 377 17 0 1 377 1 377 0.0 760
Msa0517760 AT2G37620.2 95.491 377 17 0 1 377 1 377 0.0 760
Msa0517760 AT2G37620.4 95.491 377 17 0 1 377 1 377 0.0 760
Msa0517760 AT3G12110.1 95.491 377 17 0 1 377 1 377 0.0 760
Msa0517760 AT3G46520.2 94.430 377 21 0 1 377 1 377 0.0 749
Msa0517760 AT3G46520.1 94.430 377 21 0 1 377 1 377 0.0 749
Msa0517760 AT1G49240.1 93.369 377 25 0 1 377 1 377 0.0 749
Msa0517760 AT5G59370.2 94.164 377 22 0 1 377 1 377 0.0 748
Msa0517760 AT5G59370.1 94.164 377 22 0 1 377 1 377 0.0 748
Msa0517760 AT3G18780.2 93.103 377 26 0 1 377 1 377 0.0 747
Msa0517760 AT3G18780.3 93.103 377 26 0 1 377 1 377 0.0 747
Msa0517760 AT3G18780.1 92.521 361 27 0 1 361 1 361 0.0 707
Msa0517760 AT2G42100.1 84.511 368 57 0 10 377 11 378 0.0 674
Msa0517760 AT2G42090.1 71.622 370 100 1 7 376 1 365 0.0 569
Msa0517760 AT2G42170.1 78.313 332 69 1 46 377 1 329 0.0 560
Msa0517760 AT2G42170.3 78.313 332 69 1 46 377 1 329 0.0 560
Msa0517760 AT2G42170.4 78.526 312 64 1 46 357 1 309 0.0 523
Msa0517760 AT2G42170.2 78.526 312 64 1 46 357 1 309 0.0 523
Msa0517760 AT2G42170.5 78.319 226 46 1 152 377 9 231 2.52e-131 375
Msa0517760 AT3G27000.1 44.591 379 196 4 10 374 7 385 1.16e-122 360
Msa0517760 AT1G18450.1 38.202 445 201 11 1 376 1 440 8.92e-95 290
Msa0517760 AT1G13180.1 34.867 413 215 10 10 372 9 417 1.60e-72 233
Msa0517760 AT3G60830.1 37.467 379 213 9 7 377 1 363 1.72e-66 215
Msa0517760 AT3G33520.1 30.404 421 235 7 10 377 5 420 3.72e-59 197
Msa0517760 AT5G56180.3 30.928 291 175 9 91 364 50 331 2.05e-35 132
Msa0517760 AT5G56180.1 30.928 291 175 9 91 364 182 463 1.20e-34 133
Msa0517760 AT3G12380.2 29.572 257 158 6 9 245 21 274 3.56e-26 110
Msa0517760 AT3G12380.2 34.426 122 77 1 250 368 595 716 6.11e-16 80.1
Msa0517760 AT3G12380.1 29.412 255 155 6 9 245 21 268 1.80e-25 108
Msa0517760 AT3G12380.1 34.426 122 77 1 250 368 589 710 5.87e-16 80.1
Msa0517760 AT1G73910.1 35.862 145 74 3 1 129 1 142 2.72e-23 95.1
Msa0517760 AT1G73910.2 35.862 145 74 3 1 129 1 142 2.72e-23 95.1
Msa0517760 AT5G56180.2 31.683 202 115 7 91 281 182 371 4.67e-19 88.2
Msa0517760 AT1G73910.3 29.268 123 71 2 1 107 1 123 2.87e-12 65.1

Find 153 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAACCAGGCAACCCTTTC+CGG 0.138198 3_4:-69485276 None:intergenic
TCAAATGTAAAATCTGAAAA+AGG 0.170768 3_4:-69485013 None:intergenic
TGAAAGTCTCAAACATGATT+TGG 0.224034 3_4:-69483838 None:intergenic
TTACCATTATCGCATCATTT+TGG 0.235445 3_4:-69484790 None:intergenic
AGAAGCACTGGGTGCTCTTC+AGG 0.266274 3_4:-69483770 None:intergenic
GAGAGTAAGAATACCTCTTT+TGG 0.276320 3_4:-69483657 None:intergenic
GATGGTTGGAAAAGGACTTC+TGG 0.306272 3_4:-69484332 None:intergenic
AGCACGGTATTGTCAGTAAC+TGG 0.314467 3_4:+69483693 Msa0517760:CDS
ACAGGTATTGTGTTGGATTC+CGG 0.317257 3_4:+69484005 Msa0517760:intron
CTGACAATACCGTGCTCAAT+GGG 0.336851 3_4:-69483686 None:intergenic
ATCCTTCGTTTGGATCTTGC+TGG 0.344358 3_4:+69484083 Msa0517760:CDS
TCCTAGCAGCATGAAGATTA+AGG 0.346598 3_4:+69484523 Msa0517760:CDS
GGTGGTTCAACTATGTTTCC+TGG 0.355516 3_4:+69484461 Msa0517760:CDS
TGTGTGCAGGCTGGATTTGC+TGG 0.360977 3_4:+69483524 Msa0517760:intron
GAAAGTCTCAAACATGATTT+GGG 0.367813 3_4:-69483837 None:intergenic
AGTCCAAAATGATGCGATAA+TGG 0.369879 3_4:+69484787 Msa0517760:exon
GCTTCCATTCCGATCATTGA+TGG 0.371444 3_4:-69484350 None:intergenic
CTATTGGCCTTTGGGTTAAG+TGG 0.372320 3_4:-69483803 None:intergenic
TTGGTGTCTCTGTCATGTTA+TGG 0.375712 3_4:+69484837 Msa0517760:three_prime_UTR
GCAACCAGGCAACCCTTTCC+GGG 0.377683 3_4:-69485275 None:intergenic
TACTGGTGTCATGGTTGGTA+TGG 0.381549 3_4:+69483598 Msa0517760:CDS
CCCACATGCTATCCTTCGTT+TGG 0.383523 3_4:+69484073 Msa0517760:CDS
CAAAATTAAAATTTGAGATC+GGG 0.390966 3_4:-69485297 None:intergenic
CGAGGTCGGCCAACAATACT+TGG 0.411313 3_4:-69483572 None:intergenic
TCTGTAGATCCACGTAAATC+AGG 0.413472 3_4:-69485246 None:intergenic
TACGGCAACATTGTTCTTAG+TGG 0.417976 3_4:+69484440 Msa0517760:CDS
ATGGTTGGAAAAGGACTTCT+GGG 0.420047 3_4:-69484331 None:intergenic
GGAAATTGTCCGTGACATAA+AGG 0.432407 3_4:+69484178 Msa0517760:CDS
TATGCAAGTGGTCGTACAAC+TGG 0.432992 3_4:+69483905 Msa0517760:CDS
GTTGGCCGACCTCGTCATAC+TGG 0.436618 3_4:+69483581 Msa0517760:CDS
CTTGTTTGTGACAATGGAAC+TGG 0.436831 3_4:+69483408 Msa0517760:CDS
TCTTCATGCTGCTAGGAGCC+AGG 0.437433 3_4:-69484517 None:intergenic
CAACCCCTTGTTTGTGACAA+TGG 0.439095 3_4:+69483402 Msa0517760:CDS
TTCTCTCAGTACTTTCCAGC+AGG 0.448158 3_4:+69484601 Msa0517760:CDS
GGAGCCTCAGTTAGAAGCAC+TGG 0.448567 3_4:-69483782 None:intergenic
TTGCTGGTGATGATGCTCCT+AGG 0.448710 3_4:+69483540 Msa0517760:CDS
GCTGTGTTTCCAAGTATTGT+TGG 0.449099 3_4:+69483563 Msa0517760:CDS
CGCCATGTATGTGGCCATCC+AGG 0.449438 3_4:+69483868 Msa0517760:CDS
ACACTTCATGATAGAGTTGT+AGG 0.451087 3_4:-69484393 None:intergenic
CAGAGAGAAAGTACAGTGTC+TGG 0.452136 3_4:+69484558 Msa0517760:CDS
GATGGACAAGTTATCACAAT+TGG 0.452391 3_4:+69484290 Msa0517760:CDS
ATTGTGATAACTTGTCCATC+AGG 0.464957 3_4:-69484287 None:intergenic
AACTGTTGTTTAGCAAAAGA+TGG 0.467108 3_4:+69483362 None:intergenic
CATTTCCTGTGGACAATGGA+TGG 0.469196 3_4:-69484758 None:intergenic
CGATCATTGATGGTTGGAAA+AGG 0.470418 3_4:-69484340 None:intergenic
CCAAAATTAAAATTTGAGAT+CGG 0.476263 3_4:-69485298 None:intergenic
TACAGAATTATTCCCGGAAA+GGG 0.476794 3_4:+69485263 Msa0517760:three_prime_UTR
GGGATGACATGGAGAAGATC+TGG 0.479434 3_4:+69483714 Msa0517760:CDS
TAGGTTGGTTGCCTGTAGTA+AGG 0.480909 3_4:+69484950 Msa0517760:three_prime_UTR
GAAGCTTGCATATGTTGCCT+TGG 0.482032 3_4:+69484202 Msa0517760:CDS
AGAAAGTACAGTGTCTGGAT+TGG 0.483200 3_4:+69484563 Msa0517760:CDS
TATTCCCGGAAAGGGTTGCC+TGG 0.483405 3_4:+69485271 Msa0517760:three_prime_UTR
AGCCTGGATGGCCACATACA+TGG 0.486225 3_4:-69483870 None:intergenic
CAGACACTGTACTTTCTCTC+TGG 0.490948 3_4:-69484557 None:intergenic
TGGATCTACAGAATTATTCC+CGG 0.491747 3_4:+69485257 Msa0517760:three_prime_UTR
TCACACTGTGCCAATCTATG+AGG 0.492803 3_4:+69484040 Msa0517760:CDS
ACTGACAATACCGTGCTCAA+TGG 0.496612 3_4:-69483687 None:intergenic
AAGTACAGTGTCTGGATTGG+AGG 0.497575 3_4:+69484566 Msa0517760:CDS
ATGAAGATCCTCACTGAGAG+AGG 0.498979 3_4:+69484128 Msa0517760:CDS
AAGGGTGAATATGACGAGTC+TGG 0.499493 3_4:+69484734 Msa0517760:CDS
CAGCATGAAGATTAAGGTTG+TGG 0.500086 3_4:+69484529 Msa0517760:CDS
CATAAACATGACGTTCCAAA+AGG 0.501322 3_4:-69485051 None:intergenic
GTTCACCACCTCAGCTGAGC+GGG 0.502382 3_4:+69484157 Msa0517760:CDS
AGTGCATAACCCTCATAGAT+TGG 0.503175 3_4:-69484050 None:intergenic
CCATTCCGATCATTGATGGT+TGG 0.507915 3_4:-69484346 None:intergenic
CTCATACGGTCAGCAATACC+AGG 0.512812 3_4:-69484479 None:intergenic
TGCTGGTGATGATGCTCCTA+GGG 0.516201 3_4:+69483541 Msa0517760:CDS
CATAGAGGGAGAGGACAGCC+TGG 0.522013 3_4:-69483886 None:intergenic
TTGGGCTTCGTCACCAACAT+AGG 0.522846 3_4:-69483633 None:intergenic
CAGTTCCATTGTCACAAACA+AGG 0.524372 3_4:-69483407 None:intergenic
GGCAACATTGTTCTTAGTGG+TGG 0.526272 3_4:+69484443 Msa0517760:CDS
GAGCAAGGAGATCACTGCCC+TGG 0.526620 3_4:+69484499 Msa0517760:CDS
TAGAGTGCTTCTATGCATCA+TGG 0.529103 3_4:+69485171 Msa0517760:three_prime_UTR
ACCAACCTACAGACATCCAG+TGG 0.530029 3_4:-69484936 None:intergenic
CAGTGATCTCCTTGCTCATA+CGG 0.530919 3_4:-69484493 None:intergenic
CCAACCATCAATGATCGGAA+TGG 0.531135 3_4:+69484346 Msa0517760:CDS
CATGGTTGGTATGGGTCAAA+AGG 0.532081 3_4:+69483607 Msa0517760:CDS
ATTGTGTTGGATTCCGGCGA+TGG 0.537139 3_4:+69484011 Msa0517760:CDS
TTAATTGATATATTTGACTC+GGG 0.539777 3_4:+69485364 Msa0517760:three_prime_UTR
ACTGGTGTCATGGTTGGTAT+GGG 0.539815 3_4:+69483599 Msa0517760:CDS
ACCTCGTCATACTGGTGTCA+TGG 0.540702 3_4:+69483589 Msa0517760:CDS
GACAATTTCCCGCTCAGCTG+AGG 0.541645 3_4:-69484165 None:intergenic
CCCACTGGATGTCTGTAGGT+TGG 0.541714 3_4:+69484935 Msa0517760:three_prime_UTR
AATGTTCTGTGGCAGCCCAC+TGG 0.541871 3_4:+69484920 Msa0517760:three_prime_UTR
ACACTGTACTTTCTCTCTGG+TGG 0.545670 3_4:-69484554 None:intergenic
ATGATCGGAATGGAAGCTGC+TGG 0.546973 3_4:+69484356 Msa0517760:CDS
ACTATGTTGACATGGATAAG+AGG 0.557588 3_4:+69484861 Msa0517760:three_prime_UTR
TTTAATTGATATATTTGACT+CGG 0.559293 3_4:+69485363 Msa0517760:three_prime_UTR
TCACAATCACTCCTTACTAC+AGG 0.560040 3_4:-69484961 None:intergenic
CTACAGAATTATTCCCGGAA+AGG 0.561185 3_4:+69485262 Msa0517760:three_prime_UTR
TGTACGACCACTTGCATAGA+GGG 0.561313 3_4:-69483900 None:intergenic
AGTTCCATTGTCACAAACAA+GGG 0.561709 3_4:-69483406 None:intergenic
TGTCAGTAACTGGGATGACA+TGG 0.562581 3_4:+69483703 Msa0517760:CDS
GAGGGAGAGGACAGCCTGGA+TGG 0.565012 3_4:-69483882 None:intergenic
TTTACTACGCCTGATTTACG+TGG 0.568583 3_4:+69485237 Msa0517760:three_prime_UTR
TTGTACGACCACTTGCATAG+AGG 0.570654 3_4:-69483901 None:intergenic
AGACTCGTCATATTCACCCT+TGG 0.570952 3_4:-69484732 None:intergenic
AATTTCCCGCTCAGCTGAGG+TGG 0.571031 3_4:-69484162 None:intergenic
AAGTTCTTGTTCATAATCCA+AGG 0.571032 3_4:-69484219 None:intergenic
ATACTTGGAAACACAGCCCT+AGG 0.573620 3_4:-69483557 None:intergenic
CGTCATACTGGTGTCATGGT+TGG 0.573856 3_4:+69483593 Msa0517760:CDS
ACATGGATAAGAGGTGAGAT+CGG 0.577014 3_4:+69484870 Msa0517760:three_prime_UTR
CTTCATGCTGCTAGGAGCCA+GGG 0.577950 3_4:-69484516 None:intergenic
GAAGCATTTCCTGTGGACAA+TGG 0.580709 3_4:-69484762 None:intergenic
CAAGCTTCTCCTTTATGTCA+CGG 0.584330 3_4:-69484187 None:intergenic
GACCACTTGCATAGAGGGAG+AGG 0.585397 3_4:-69483895 None:intergenic
CTGGCCCATCCATTGTCCAC+AGG 0.585546 3_4:+69484753 Msa0517760:CDS
GCAAAAGATGGCAGATGCTG+AGG 0.585999 3_4:+69483374 Msa0517760:exon
CAATGTGCCCGCCATGTATG+TGG 0.588880 3_4:+69483859 Msa0517760:CDS
GGATAAGAGGTGAGATCGGA+GGG 0.589179 3_4:+69484874 Msa0517760:three_prime_UTR
TGGATGGCCACATACATGGC+GGG 0.589918 3_4:-69483866 None:intergenic
GACGAAGCCCAATCCAAAAG+AGG 0.590961 3_4:+69483644 Msa0517760:CDS
GTCCTCTCCCTCTATGCAAG+TGG 0.594901 3_4:+69483893 Msa0517760:CDS
ATTTCCTGTGGACAATGGAT+GGG 0.598758 3_4:-69484757 None:intergenic
ACCTTAATCTTCATGCTGCT+AGG 0.600175 3_4:-69484524 None:intergenic
GCAGCCCACTGGATGTCTGT+AGG 0.600795 3_4:+69484931 Msa0517760:three_prime_UTR
TTGATTTATCAAATGTTCTG+TGG 0.602809 3_4:+69484909 Msa0517760:three_prime_UTR
TTTGCAGATGTGGATATCCA+AGG 0.604467 3_4:+69484715 Msa0517760:intron
AAATTTGAGATCGGGCAACC+AGG 0.607557 3_4:-69485289 None:intergenic
CTCAAGTACCCCATTGAGCA+CGG 0.608960 3_4:+69483677 Msa0517760:CDS
CACACTGTGCCAATCTATGA+GGG 0.612158 3_4:+69484041 Msa0517760:CDS
GATATCAGAAAGGATCTGTA+CGG 0.620511 3_4:+69484422 Msa0517760:CDS
TATTGCTGACCGTATGAGCA+AGG 0.626661 3_4:+69484484 Msa0517760:CDS
GAGCCTCAGTTAGAAGCACT+GGG 0.630481 3_4:-69483781 None:intergenic
AGTGTGACTCACACCATCGC+CGG 0.631174 3_4:-69484024 None:intergenic
TGGATAAGAGGTGAGATCGG+AGG 0.631713 3_4:+69484873 Msa0517760:three_prime_UTR
GCACGGTATTGTCAGTAACT+GGG 0.632162 3_4:+69483694 Msa0517760:CDS
GGTCAAAAGGATGCCTATGT+TGG 0.633441 3_4:+69483620 Msa0517760:CDS
TCCAAACGAAGGATAGCATG+TGG 0.637382 3_4:-69484074 None:intergenic
TTGTGACAATGGAACTGGAA+TGG 0.639550 3_4:+69483413 Msa0517760:CDS
CTCTATCATGAAGTGTGATG+TGG 0.640270 3_4:+69484400 Msa0517760:CDS
GGACTTAGAAGCATTTCCTG+TGG 0.642629 3_4:-69484769 None:intergenic
GGAAAAGGACTTCTGGGCAA+CGG 0.648496 3_4:-69484325 None:intergenic
GTGTGATGTGGATATCAGAA+AGG 0.654508 3_4:+69484412 Msa0517760:CDS
GGAAAGTACTGAGAGAAGCA+AGG 0.656348 3_4:-69484595 None:intergenic
GTTCCATTGTCACAAACAAG+GGG 0.658903 3_4:-69483405 None:intergenic
CAATGGAACTGGAATGGTGA+AGG 0.661223 3_4:+69483419 Msa0517760:CDS
TGAAGATCCTCACTGAGAGA+GGG 0.661425 3_4:+69484129 Msa0517760:CDS
TTATCACAATTGGAGCTGAG+AGG 0.664936 3_4:+69484300 Msa0517760:CDS
TGAGGCTCCACTTAACCCAA+AGG 0.668440 3_4:+69483796 Msa0517760:CDS
TGACACCAGTATGACGAGGT+CGG 0.672228 3_4:-69483586 None:intergenic
GCACCCAGTGCTTCTAACTG+AGG 0.673440 3_4:+69483778 Msa0517760:CDS
CCAAACGAAGGATAGCATGT+GGG 0.675471 3_4:-69484073 None:intergenic
TTGCAGATGTGGATATCCAA+GGG 0.681771 3_4:+69484716 Msa0517760:intron
CTGGATGGCCACATACATGG+CGG 0.687535 3_4:-69483867 None:intergenic
CTTCATGATAGAGTTGTAGG+TGG 0.694993 3_4:-69484390 None:intergenic
GTTATGGAACTATGTTGACA+TGG 0.703939 3_4:+69484853 Msa0517760:three_prime_UTR
GACCAGCAAGATCCAAACGA+AGG 0.704830 3_4:-69484085 None:intergenic
ACATGTACCCTCTCTCAGTG+AGG 0.709732 3_4:-69484136 None:intergenic
TGACAATACCGTGCTCAATG+GGG 0.720666 3_4:-69483685 None:intergenic
TGTTCACCACCTCAGCTGAG+CGG 0.722178 3_4:+69484156 Msa0517760:CDS
CCAACCTACAGACATCCAGT+GGG 0.728027 3_4:-69484935 None:intergenic
ACCATGACACCAGTATGACG+AGG 0.732971 3_4:-69483590 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTGATATATTTGACT+CGG + chr3_4:69485363-69485382 Msa0517760:three_prime_UTR 15.0%
!! TTTAATTGATATATTTGACT+CGG + chr3_4:69485363-69485382 Msa0517760:three_prime_UTR 15.0%
!! TTCAAAAATGAAAAGATTGA+GGG - chr3_4:69483985-69484004 None:intergenic 20.0%
!! TTTCAAAAATGAAAAGATTG+AGG - chr3_4:69483986-69484005 None:intergenic 20.0%
!!! AATCTTTTCATTTTTGAAAC+AGG + chr3_4:69483987-69484006 Msa0517760:intron 20.0%
!! CAAATGTAAAATCTGAAAAA+GGG - chr3_4:69485015-69485034 None:intergenic 20.0%
!! TCAAATGTAAAATCTGAAAA+AGG - chr3_4:69485016-69485035 None:intergenic 20.0%
!!! TTTTCAGATTTTACATTTGA+AGG + chr3_4:69485016-69485035 Msa0517760:three_prime_UTR 20.0%
!!! AGGTTTTTTTTTTTTCCTTT+TGG + chr3_4:69485036-69485055 Msa0517760:three_prime_UTR 20.0%
!!! CAAAATTAAAATTTGAGATC+GGG - chr3_4:69485300-69485319 None:intergenic 20.0%
!!! CCAAAATTAAAATTTGAGAT+CGG - chr3_4:69485301-69485320 None:intergenic 20.0%
!!! TTTAATTTTGGATGAAAGAA+AGG + chr3_4:69485310-69485329 Msa0517760:three_prime_UTR 20.0%
!! TTAATTGATATATTTGACTC+GGG + chr3_4:69485364-69485383 Msa0517760:three_prime_UTR 20.0%
!! TTCAAAAATGAAAAGATTGA+GGG - chr3_4:69483985-69484004 None:intergenic 20.0%
!! TTTCAAAAATGAAAAGATTG+AGG - chr3_4:69483986-69484005 None:intergenic 20.0%
!!! AATCTTTTCATTTTTGAAAC+AGG + chr3_4:69483987-69484006 Msa0517760:intron 20.0%
!! CAAATGTAAAATCTGAAAAA+GGG - chr3_4:69485015-69485034 None:intergenic 20.0%
!! TCAAATGTAAAATCTGAAAA+AGG - chr3_4:69485016-69485035 None:intergenic 20.0%
!!! TTTTCAGATTTTACATTTGA+AGG + chr3_4:69485016-69485035 Msa0517760:three_prime_UTR 20.0%
!!! AGGTTTTTTTTTTTTCCTTT+TGG + chr3_4:69485036-69485055 Msa0517760:three_prime_UTR 20.0%
!!! CAAAATTAAAATTTGAGATC+GGG - chr3_4:69485300-69485319 None:intergenic 20.0%
!!! CCAAAATTAAAATTTGAGAT+CGG - chr3_4:69485301-69485320 None:intergenic 20.0%
!!! TTTAATTTTGGATGAAAGAA+AGG + chr3_4:69485310-69485329 Msa0517760:three_prime_UTR 20.0%
!! TTAATTGATATATTTGACTC+GGG + chr3_4:69485364-69485383 Msa0517760:three_prime_UTR 20.0%
! TTGATTTATCAAATGTTCTG+TGG + chr3_4:69484909-69484928 Msa0517760:three_prime_UTR 25.0%
!!! CCGATCTCAAATTTTAATTT+TGG + chr3_4:69485298-69485317 Msa0517760:three_prime_UTR 25.0%
! TTGATTTATCAAATGTTCTG+TGG + chr3_4:69484909-69484928 Msa0517760:three_prime_UTR 25.0%
!!! CCGATCTCAAATTTTAATTT+TGG + chr3_4:69485298-69485317 Msa0517760:three_prime_UTR 25.0%
! AAGAATACCTCTTTTGGATT+GGG - chr3_4:69483654-69483673 None:intergenic 30.0%
! TAAGAATACCTCTTTTGGAT+TGG - chr3_4:69483655-69483674 None:intergenic 30.0%
GAAAGTCTCAAACATGATTT+GGG - chr3_4:69483840-69483859 None:intergenic 30.0%
TGAAAGTCTCAAACATGATT+TGG - chr3_4:69483841-69483860 None:intergenic 30.0%
!!! TTTTGAAACAGGTATTGTGT+TGG + chr3_4:69483998-69484017 Msa0517760:intron 30.0%
AAGTTCTTGTTCATAATCCA+AGG - chr3_4:69484222-69484241 None:intergenic 30.0%
AAAAACTATGAACTTCCTGA+TGG + chr3_4:69484272-69484291 Msa0517760:CDS 30.0%
GACATCACATACATTATACA+TGG - chr3_4:69484658-69484677 None:intergenic 30.0%
!!! TTGTTTTTGTTTTGCAGATG+TGG + chr3_4:69484705-69484724 Msa0517760:intron 30.0%
! TTACCATTATCGCATCATTT+TGG - chr3_4:69484793-69484812 None:intergenic 30.0%
!!! ATGGTAAGTTATTTTTGCTG+TGG + chr3_4:69484806-69484825 Msa0517760:three_prime_UTR 30.0%
! GCTTGTATCGAGATATTTTA+CGG + chr3_4:69485080-69485099 Msa0517760:three_prime_UTR 30.0%
GATGAAAGAAAGGAAAAACA+TGG + chr3_4:69485320-69485339 Msa0517760:three_prime_UTR 30.0%
! AAGAATACCTCTTTTGGATT+GGG - chr3_4:69483654-69483673 None:intergenic 30.0%
! TAAGAATACCTCTTTTGGAT+TGG - chr3_4:69483655-69483674 None:intergenic 30.0%
GAAAGTCTCAAACATGATTT+GGG - chr3_4:69483840-69483859 None:intergenic 30.0%
TGAAAGTCTCAAACATGATT+TGG - chr3_4:69483841-69483860 None:intergenic 30.0%
!!! TTTTGAAACAGGTATTGTGT+TGG + chr3_4:69483998-69484017 Msa0517760:intron 30.0%
AAGTTCTTGTTCATAATCCA+AGG - chr3_4:69484222-69484241 None:intergenic 30.0%
AAAAACTATGAACTTCCTGA+TGG + chr3_4:69484272-69484291 Msa0517760:CDS 30.0%
GACATCACATACATTATACA+TGG - chr3_4:69484658-69484677 None:intergenic 30.0%
!!! TTGTTTTTGTTTTGCAGATG+TGG + chr3_4:69484705-69484724 Msa0517760:intron 30.0%
! TTACCATTATCGCATCATTT+TGG - chr3_4:69484793-69484812 None:intergenic 30.0%
!!! ATGGTAAGTTATTTTTGCTG+TGG + chr3_4:69484806-69484825 Msa0517760:three_prime_UTR 30.0%
! GCTTGTATCGAGATATTTTA+CGG + chr3_4:69485080-69485099 Msa0517760:three_prime_UTR 30.0%
GATGAAAGAAAGGAAAAACA+TGG + chr3_4:69485320-69485339 Msa0517760:three_prime_UTR 30.0%
AGTTCCATTGTCACAAACAA+GGG - chr3_4:69483409-69483428 None:intergenic 35.0%
TTCATCTACAATTTGTGTGC+AGG + chr3_4:69483511-69483530 Msa0517760:intron 35.0%
! GAGAGTAAGAATACCTCTTT+TGG - chr3_4:69483660-69483679 None:intergenic 35.0%
!!! TCTTTTCTCTATTGGCCTTT+GGG - chr3_4:69483814-69483833 None:intergenic 35.0%
!!! ATCTTTTCTCTATTGGCCTT+TGG - chr3_4:69483815-69483834 None:intergenic 35.0%
! TTGGGTCATCTTTTCTCTAT+TGG - chr3_4:69483822-69483841 None:intergenic 35.0%
AAGATTGAGGGACAGAATAA+TGG - chr3_4:69483973-69483992 None:intergenic 35.0%
! ATTGTGATAACTTGTCCATC+AGG - chr3_4:69484290-69484309 None:intergenic 35.0%
GATGGACAAGTTATCACAAT+TGG + chr3_4:69484290-69484309 Msa0517760:CDS 35.0%
! CTTTTCCAACCATCAATGAT+CGG + chr3_4:69484341-69484360 Msa0517760:CDS 35.0%
ACACTTCATGATAGAGTTGT+AGG - chr3_4:69484396-69484415 None:intergenic 35.0%
GATATCAGAAAGGATCTGTA+CGG + chr3_4:69484422-69484441 Msa0517760:CDS 35.0%
GTGATAAAATAATCACCTGC+TGG - chr3_4:69484619-69484638 None:intergenic 35.0%
AGTCCAAAATGATGCGATAA+TGG + chr3_4:69484787-69484806 Msa0517760:exon 35.0%
!!! TTTTGCTGTGGTTGCTTTTT+TGG + chr3_4:69484818-69484837 Msa0517760:three_prime_UTR 35.0%
GTTATGGAACTATGTTGACA+TGG + chr3_4:69484853-69484872 Msa0517760:three_prime_UTR 35.0%
ACTATGTTGACATGGATAAG+AGG + chr3_4:69484861-69484880 Msa0517760:three_prime_UTR 35.0%
AAAATCTGAAAAAGGGCGAA+AGG - chr3_4:69485008-69485027 None:intergenic 35.0%
CATAAACATGACGTTCCAAA+AGG - chr3_4:69485054-69485073 None:intergenic 35.0%
TGGATCTACAGAATTATTCC+CGG + chr3_4:69485257-69485276 Msa0517760:three_prime_UTR 35.0%
TACAGAATTATTCCCGGAAA+GGG + chr3_4:69485263-69485282 Msa0517760:three_prime_UTR 35.0%
AGTTCCATTGTCACAAACAA+GGG - chr3_4:69483409-69483428 None:intergenic 35.0%
TTCATCTACAATTTGTGTGC+AGG + chr3_4:69483511-69483530 Msa0517760:intron 35.0%
! GAGAGTAAGAATACCTCTTT+TGG - chr3_4:69483660-69483679 None:intergenic 35.0%
!!! TCTTTTCTCTATTGGCCTTT+GGG - chr3_4:69483814-69483833 None:intergenic 35.0%
!!! ATCTTTTCTCTATTGGCCTT+TGG - chr3_4:69483815-69483834 None:intergenic 35.0%
! TTGGGTCATCTTTTCTCTAT+TGG - chr3_4:69483822-69483841 None:intergenic 35.0%
AAGATTGAGGGACAGAATAA+TGG - chr3_4:69483973-69483992 None:intergenic 35.0%
! ATTGTGATAACTTGTCCATC+AGG - chr3_4:69484290-69484309 None:intergenic 35.0%
GATGGACAAGTTATCACAAT+TGG + chr3_4:69484290-69484309 Msa0517760:CDS 35.0%
! CTTTTCCAACCATCAATGAT+CGG + chr3_4:69484341-69484360 Msa0517760:CDS 35.0%
ACACTTCATGATAGAGTTGT+AGG - chr3_4:69484396-69484415 None:intergenic 35.0%
GATATCAGAAAGGATCTGTA+CGG + chr3_4:69484422-69484441 Msa0517760:CDS 35.0%
GTGATAAAATAATCACCTGC+TGG - chr3_4:69484619-69484638 None:intergenic 35.0%
AGTCCAAAATGATGCGATAA+TGG + chr3_4:69484787-69484806 Msa0517760:exon 35.0%
!!! TTTTGCTGTGGTTGCTTTTT+TGG + chr3_4:69484818-69484837 Msa0517760:three_prime_UTR 35.0%
GTTATGGAACTATGTTGACA+TGG + chr3_4:69484853-69484872 Msa0517760:three_prime_UTR 35.0%
ACTATGTTGACATGGATAAG+AGG + chr3_4:69484861-69484880 Msa0517760:three_prime_UTR 35.0%
AAAATCTGAAAAAGGGCGAA+AGG - chr3_4:69485008-69485027 None:intergenic 35.0%
CATAAACATGACGTTCCAAA+AGG - chr3_4:69485054-69485073 None:intergenic 35.0%
TGGATCTACAGAATTATTCC+CGG + chr3_4:69485257-69485276 Msa0517760:three_prime_UTR 35.0%
TACAGAATTATTCCCGGAAA+GGG + chr3_4:69485263-69485282 Msa0517760:three_prime_UTR 35.0%
GTTCCATTGTCACAAACAAG+GGG - chr3_4:69483408-69483427 None:intergenic 40.0%
CAGTTCCATTGTCACAAACA+AGG - chr3_4:69483410-69483429 None:intergenic 40.0%
CTTGTTTGTGACAATGGAAC+TGG + chr3_4:69483408-69483427 Msa0517760:CDS 40.0%
TTGTGACAATGGAACTGGAA+TGG + chr3_4:69483413-69483432 Msa0517760:CDS 40.0%
! GCTGTGTTTCCAAGTATTGT+TGG + chr3_4:69483563-69483582 Msa0517760:CDS 40.0%
! ACAGGTATTGTGTTGGATTC+CGG + chr3_4:69484005-69484024 Msa0517760:intron 40.0%
AGTGCATAACCCTCATAGAT+TGG - chr3_4:69484053-69484072 None:intergenic 40.0%
GGAAATTGTCCGTGACATAA+AGG + chr3_4:69484178-69484197 Msa0517760:CDS 40.0%
CAAGCTTCTCCTTTATGTCA+CGG - chr3_4:69484190-69484209 None:intergenic 40.0%
TTATCACAATTGGAGCTGAG+AGG + chr3_4:69484300-69484319 Msa0517760:CDS 40.0%
ATGGTTGGAAAAGGACTTCT+GGG - chr3_4:69484334-69484353 None:intergenic 40.0%
! CGATCATTGATGGTTGGAAA+AGG - chr3_4:69484343-69484362 None:intergenic 40.0%
CTTCATGATAGAGTTGTAGG+TGG - chr3_4:69484393-69484412 None:intergenic 40.0%
CTCTATCATGAAGTGTGATG+TGG + chr3_4:69484400-69484419 Msa0517760:CDS 40.0%
GTGTGATGTGGATATCAGAA+AGG + chr3_4:69484412-69484431 Msa0517760:CDS 40.0%
TACGGCAACATTGTTCTTAG+TGG + chr3_4:69484440-69484459 Msa0517760:CDS 40.0%
TCCTAGCAGCATGAAGATTA+AGG + chr3_4:69484523-69484542 Msa0517760:CDS 40.0%
ACCTTAATCTTCATGCTGCT+AGG - chr3_4:69484527-69484546 None:intergenic 40.0%
CAGCATGAAGATTAAGGTTG+TGG + chr3_4:69484529-69484548 Msa0517760:CDS 40.0%
! AGAAAGTACAGTGTCTGGAT+TGG + chr3_4:69484563-69484582 Msa0517760:CDS 40.0%
TTTGCAGATGTGGATATCCA+AGG + chr3_4:69484715-69484734 Msa0517760:intron 40.0%
TTGCAGATGTGGATATCCAA+GGG + chr3_4:69484716-69484735 Msa0517760:intron 40.0%
ATTTCCTGTGGACAATGGAT+GGG - chr3_4:69484760-69484779 None:intergenic 40.0%
! TTGGTGTCTCTGTCATGTTA+TGG + chr3_4:69484837-69484856 Msa0517760:three_prime_UTR 40.0%
ACATGGATAAGAGGTGAGAT+CGG + chr3_4:69484870-69484889 Msa0517760:three_prime_UTR 40.0%
TCACAATCACTCCTTACTAC+AGG - chr3_4:69484964-69484983 None:intergenic 40.0%
! TAGAGTGCTTCTATGCATCA+TGG + chr3_4:69485171-69485190 Msa0517760:three_prime_UTR 40.0%
TTTACTACGCCTGATTTACG+TGG + chr3_4:69485237-69485256 Msa0517760:three_prime_UTR 40.0%
TCTGTAGATCCACGTAAATC+AGG - chr3_4:69485249-69485268 None:intergenic 40.0%
CTACAGAATTATTCCCGGAA+AGG + chr3_4:69485262-69485281 Msa0517760:three_prime_UTR 40.0%
GTTCCATTGTCACAAACAAG+GGG - chr3_4:69483408-69483427 None:intergenic 40.0%
CAGTTCCATTGTCACAAACA+AGG - chr3_4:69483410-69483429 None:intergenic 40.0%
CTTGTTTGTGACAATGGAAC+TGG + chr3_4:69483408-69483427 Msa0517760:CDS 40.0%
TTGTGACAATGGAACTGGAA+TGG + chr3_4:69483413-69483432 Msa0517760:CDS 40.0%
! GCTGTGTTTCCAAGTATTGT+TGG + chr3_4:69483563-69483582 Msa0517760:CDS 40.0%
! ACAGGTATTGTGTTGGATTC+CGG + chr3_4:69484005-69484024 Msa0517760:intron 40.0%
AGTGCATAACCCTCATAGAT+TGG - chr3_4:69484053-69484072 None:intergenic 40.0%
GGAAATTGTCCGTGACATAA+AGG + chr3_4:69484178-69484197 Msa0517760:CDS 40.0%
CAAGCTTCTCCTTTATGTCA+CGG - chr3_4:69484190-69484209 None:intergenic 40.0%
TTATCACAATTGGAGCTGAG+AGG + chr3_4:69484300-69484319 Msa0517760:CDS 40.0%
ATGGTTGGAAAAGGACTTCT+GGG - chr3_4:69484334-69484353 None:intergenic 40.0%
! CGATCATTGATGGTTGGAAA+AGG - chr3_4:69484343-69484362 None:intergenic 40.0%
CTTCATGATAGAGTTGTAGG+TGG - chr3_4:69484393-69484412 None:intergenic 40.0%
CTCTATCATGAAGTGTGATG+TGG + chr3_4:69484400-69484419 Msa0517760:CDS 40.0%
GTGTGATGTGGATATCAGAA+AGG + chr3_4:69484412-69484431 Msa0517760:CDS 40.0%
TACGGCAACATTGTTCTTAG+TGG + chr3_4:69484440-69484459 Msa0517760:CDS 40.0%
TCCTAGCAGCATGAAGATTA+AGG + chr3_4:69484523-69484542 Msa0517760:CDS 40.0%
ACCTTAATCTTCATGCTGCT+AGG - chr3_4:69484527-69484546 None:intergenic 40.0%
CAGCATGAAGATTAAGGTTG+TGG + chr3_4:69484529-69484548 Msa0517760:CDS 40.0%
! AGAAAGTACAGTGTCTGGAT+TGG + chr3_4:69484563-69484582 Msa0517760:CDS 40.0%
TTTGCAGATGTGGATATCCA+AGG + chr3_4:69484715-69484734 Msa0517760:intron 40.0%
TTGCAGATGTGGATATCCAA+GGG + chr3_4:69484716-69484735 Msa0517760:intron 40.0%
ATTTCCTGTGGACAATGGAT+GGG - chr3_4:69484760-69484779 None:intergenic 40.0%
! TTGGTGTCTCTGTCATGTTA+TGG + chr3_4:69484837-69484856 Msa0517760:three_prime_UTR 40.0%
ACATGGATAAGAGGTGAGAT+CGG + chr3_4:69484870-69484889 Msa0517760:three_prime_UTR 40.0%
TCACAATCACTCCTTACTAC+AGG - chr3_4:69484964-69484983 None:intergenic 40.0%
! TAGAGTGCTTCTATGCATCA+TGG + chr3_4:69485171-69485190 Msa0517760:three_prime_UTR 40.0%
TTTACTACGCCTGATTTACG+TGG + chr3_4:69485237-69485256 Msa0517760:three_prime_UTR 40.0%
TCTGTAGATCCACGTAAATC+AGG - chr3_4:69485249-69485268 None:intergenic 40.0%
CTACAGAATTATTCCCGGAA+AGG + chr3_4:69485262-69485281 Msa0517760:three_prime_UTR 40.0%
! CAACCCCTTGTTTGTGACAA+TGG + chr3_4:69483402-69483421 Msa0517760:CDS 45.0%
CAATGGAACTGGAATGGTGA+AGG + chr3_4:69483419-69483438 Msa0517760:CDS 45.0%
TCTACAATTTGTGTGCAGGC+TGG + chr3_4:69483515-69483534 Msa0517760:intron 45.0%
ATACTTGGAAACACAGCCCT+AGG - chr3_4:69483560-69483579 None:intergenic 45.0%
!! TACTGGTGTCATGGTTGGTA+TGG + chr3_4:69483598-69483617 Msa0517760:CDS 45.0%
!! ACTGGTGTCATGGTTGGTAT+GGG + chr3_4:69483599-69483618 Msa0517760:CDS 45.0%
! CATGGTTGGTATGGGTCAAA+AGG + chr3_4:69483607-69483626 Msa0517760:CDS 45.0%
GGTCAAAAGGATGCCTATGT+TGG + chr3_4:69483620-69483639 Msa0517760:CDS 45.0%
TGACAATACCGTGCTCAATG+GGG - chr3_4:69483688-69483707 None:intergenic 45.0%
CTGACAATACCGTGCTCAAT+GGG - chr3_4:69483689-69483708 None:intergenic 45.0%
ACTGACAATACCGTGCTCAA+TGG - chr3_4:69483690-69483709 None:intergenic 45.0%
AGCACGGTATTGTCAGTAAC+TGG + chr3_4:69483693-69483712 Msa0517760:CDS 45.0%
GCACGGTATTGTCAGTAACT+GGG + chr3_4:69483694-69483713 Msa0517760:CDS 45.0%
TGTCAGTAACTGGGATGACA+TGG + chr3_4:69483703-69483722 Msa0517760:CDS 45.0%
!! CTATTGGCCTTTGGGTTAAG+TGG - chr3_4:69483806-69483825 None:intergenic 45.0%
TGTACGACCACTTGCATAGA+GGG - chr3_4:69483903-69483922 None:intergenic 45.0%
TTGTACGACCACTTGCATAG+AGG - chr3_4:69483904-69483923 None:intergenic 45.0%
TATGCAAGTGGTCGTACAAC+TGG + chr3_4:69483905-69483924 Msa0517760:CDS 45.0%
TCACACTGTGCCAATCTATG+AGG + chr3_4:69484040-69484059 Msa0517760:CDS 45.0%
CACACTGTGCCAATCTATGA+GGG + chr3_4:69484041-69484060 Msa0517760:CDS 45.0%
CCAAACGAAGGATAGCATGT+GGG - chr3_4:69484076-69484095 None:intergenic 45.0%
TCCAAACGAAGGATAGCATG+TGG - chr3_4:69484077-69484096 None:intergenic 45.0%
ATCCTTCGTTTGGATCTTGC+TGG + chr3_4:69484083-69484102 Msa0517760:CDS 45.0%
ATGAAGATCCTCACTGAGAG+AGG + chr3_4:69484128-69484147 Msa0517760:CDS 45.0%
TGAAGATCCTCACTGAGAGA+GGG + chr3_4:69484129-69484148 Msa0517760:CDS 45.0%
GAAGCTTGCATATGTTGCCT+TGG + chr3_4:69484202-69484221 Msa0517760:CDS 45.0%
GATGGTTGGAAAAGGACTTC+TGG - chr3_4:69484335-69484354 None:intergenic 45.0%
! CCATTCCGATCATTGATGGT+TGG - chr3_4:69484349-69484368 None:intergenic 45.0%
CCAACCATCAATGATCGGAA+TGG + chr3_4:69484346-69484365 Msa0517760:CDS 45.0%
GCTTCCATTCCGATCATTGA+TGG - chr3_4:69484353-69484372 None:intergenic 45.0%
GGCAACATTGTTCTTAGTGG+TGG + chr3_4:69484443-69484462 Msa0517760:CDS 45.0%
GGTGGTTCAACTATGTTTCC+TGG + chr3_4:69484461-69484480 Msa0517760:CDS 45.0%
TATTGCTGACCGTATGAGCA+AGG + chr3_4:69484484-69484503 Msa0517760:CDS 45.0%
CAGTGATCTCCTTGCTCATA+CGG - chr3_4:69484496-69484515 None:intergenic 45.0%
ACACTGTACTTTCTCTCTGG+TGG - chr3_4:69484557-69484576 None:intergenic 45.0%
CAGACACTGTACTTTCTCTC+TGG - chr3_4:69484560-69484579 None:intergenic 45.0%
! CAGAGAGAAAGTACAGTGTC+TGG + chr3_4:69484558-69484577 Msa0517760:CDS 45.0%
! AAGTACAGTGTCTGGATTGG+AGG + chr3_4:69484566-69484585 Msa0517760:CDS 45.0%
!! GGAAAGTACTGAGAGAAGCA+AGG - chr3_4:69484598-69484617 None:intergenic 45.0%
TTCTCTCAGTACTTTCCAGC+AGG + chr3_4:69484601-69484620 Msa0517760:CDS 45.0%
AGACTCGTCATATTCACCCT+TGG - chr3_4:69484735-69484754 None:intergenic 45.0%
AAGGGTGAATATGACGAGTC+TGG + chr3_4:69484734-69484753 Msa0517760:CDS 45.0%
CATTTCCTGTGGACAATGGA+TGG - chr3_4:69484761-69484780 None:intergenic 45.0%
! GAAGCATTTCCTGTGGACAA+TGG - chr3_4:69484765-69484784 None:intergenic 45.0%
!! GGACTTAGAAGCATTTCCTG+TGG - chr3_4:69484772-69484791 None:intergenic 45.0%
!! TAGGTTGGTTGCCTGTAGTA+AGG + chr3_4:69484950-69484969 Msa0517760:three_prime_UTR 45.0%
! AAATTTGAGATCGGGCAACC+AGG - chr3_4:69485292-69485311 None:intergenic 45.0%
! CAACCCCTTGTTTGTGACAA+TGG + chr3_4:69483402-69483421 Msa0517760:CDS 45.0%
CAATGGAACTGGAATGGTGA+AGG + chr3_4:69483419-69483438 Msa0517760:CDS 45.0%
TCTACAATTTGTGTGCAGGC+TGG + chr3_4:69483515-69483534 Msa0517760:intron 45.0%
ATACTTGGAAACACAGCCCT+AGG - chr3_4:69483560-69483579 None:intergenic 45.0%
!! TACTGGTGTCATGGTTGGTA+TGG + chr3_4:69483598-69483617 Msa0517760:CDS 45.0%
!! ACTGGTGTCATGGTTGGTAT+GGG + chr3_4:69483599-69483618 Msa0517760:CDS 45.0%
! CATGGTTGGTATGGGTCAAA+AGG + chr3_4:69483607-69483626 Msa0517760:CDS 45.0%
GGTCAAAAGGATGCCTATGT+TGG + chr3_4:69483620-69483639 Msa0517760:CDS 45.0%
TGACAATACCGTGCTCAATG+GGG - chr3_4:69483688-69483707 None:intergenic 45.0%
CTGACAATACCGTGCTCAAT+GGG - chr3_4:69483689-69483708 None:intergenic 45.0%
ACTGACAATACCGTGCTCAA+TGG - chr3_4:69483690-69483709 None:intergenic 45.0%
AGCACGGTATTGTCAGTAAC+TGG + chr3_4:69483693-69483712 Msa0517760:CDS 45.0%
GCACGGTATTGTCAGTAACT+GGG + chr3_4:69483694-69483713 Msa0517760:CDS 45.0%
TGTCAGTAACTGGGATGACA+TGG + chr3_4:69483703-69483722 Msa0517760:CDS 45.0%
!! CTATTGGCCTTTGGGTTAAG+TGG - chr3_4:69483806-69483825 None:intergenic 45.0%
TGTACGACCACTTGCATAGA+GGG - chr3_4:69483903-69483922 None:intergenic 45.0%
TTGTACGACCACTTGCATAG+AGG - chr3_4:69483904-69483923 None:intergenic 45.0%
TATGCAAGTGGTCGTACAAC+TGG + chr3_4:69483905-69483924 Msa0517760:CDS 45.0%
TCACACTGTGCCAATCTATG+AGG + chr3_4:69484040-69484059 Msa0517760:CDS 45.0%
CACACTGTGCCAATCTATGA+GGG + chr3_4:69484041-69484060 Msa0517760:CDS 45.0%
CCAAACGAAGGATAGCATGT+GGG - chr3_4:69484076-69484095 None:intergenic 45.0%
TCCAAACGAAGGATAGCATG+TGG - chr3_4:69484077-69484096 None:intergenic 45.0%
ATCCTTCGTTTGGATCTTGC+TGG + chr3_4:69484083-69484102 Msa0517760:CDS 45.0%
ATGAAGATCCTCACTGAGAG+AGG + chr3_4:69484128-69484147 Msa0517760:CDS 45.0%
TGAAGATCCTCACTGAGAGA+GGG + chr3_4:69484129-69484148 Msa0517760:CDS 45.0%
GAAGCTTGCATATGTTGCCT+TGG + chr3_4:69484202-69484221 Msa0517760:CDS 45.0%
GATGGTTGGAAAAGGACTTC+TGG - chr3_4:69484335-69484354 None:intergenic 45.0%
! CCATTCCGATCATTGATGGT+TGG - chr3_4:69484349-69484368 None:intergenic 45.0%
CCAACCATCAATGATCGGAA+TGG + chr3_4:69484346-69484365 Msa0517760:CDS 45.0%
GCTTCCATTCCGATCATTGA+TGG - chr3_4:69484353-69484372 None:intergenic 45.0%
GGCAACATTGTTCTTAGTGG+TGG + chr3_4:69484443-69484462 Msa0517760:CDS 45.0%
GGTGGTTCAACTATGTTTCC+TGG + chr3_4:69484461-69484480 Msa0517760:CDS 45.0%
TATTGCTGACCGTATGAGCA+AGG + chr3_4:69484484-69484503 Msa0517760:CDS 45.0%
CAGTGATCTCCTTGCTCATA+CGG - chr3_4:69484496-69484515 None:intergenic 45.0%
ACACTGTACTTTCTCTCTGG+TGG - chr3_4:69484557-69484576 None:intergenic 45.0%
CAGACACTGTACTTTCTCTC+TGG - chr3_4:69484560-69484579 None:intergenic 45.0%
! CAGAGAGAAAGTACAGTGTC+TGG + chr3_4:69484558-69484577 Msa0517760:CDS 45.0%
! AAGTACAGTGTCTGGATTGG+AGG + chr3_4:69484566-69484585 Msa0517760:CDS 45.0%
!! GGAAAGTACTGAGAGAAGCA+AGG - chr3_4:69484598-69484617 None:intergenic 45.0%
TTCTCTCAGTACTTTCCAGC+AGG + chr3_4:69484601-69484620 Msa0517760:CDS 45.0%
AGACTCGTCATATTCACCCT+TGG - chr3_4:69484735-69484754 None:intergenic 45.0%
AAGGGTGAATATGACGAGTC+TGG + chr3_4:69484734-69484753 Msa0517760:CDS 45.0%
CATTTCCTGTGGACAATGGA+TGG - chr3_4:69484761-69484780 None:intergenic 45.0%
! GAAGCATTTCCTGTGGACAA+TGG - chr3_4:69484765-69484784 None:intergenic 45.0%
!! GGACTTAGAAGCATTTCCTG+TGG - chr3_4:69484772-69484791 None:intergenic 45.0%
!! TAGGTTGGTTGCCTGTAGTA+AGG + chr3_4:69484950-69484969 Msa0517760:three_prime_UTR 45.0%
! AAATTTGAGATCGGGCAACC+AGG - chr3_4:69485292-69485311 None:intergenic 45.0%
!!! ATTTTAATTCTTTTAAAAAT+TGG - chr3_4:69485197-69485216 None:intergenic 5.0%
!!! ATTTTAATTCTTTTAAAAAT+TGG - chr3_4:69485197-69485216 None:intergenic 5.0%
GCAAAAGATGGCAGATGCTG+AGG + chr3_4:69483374-69483393 Msa0517760:exon 50.0%
! TTGCTGGTGATGATGCTCCT+AGG + chr3_4:69483540-69483559 Msa0517760:CDS 50.0%
! TGCTGGTGATGATGCTCCTA+GGG + chr3_4:69483541-69483560 Msa0517760:CDS 50.0%
TGACACCAGTATGACGAGGT+CGG - chr3_4:69483589-69483608 None:intergenic 50.0%
! ACCTCGTCATACTGGTGTCA+TGG + chr3_4:69483589-69483608 Msa0517760:CDS 50.0%
ACCATGACACCAGTATGACG+AGG - chr3_4:69483593-69483612 None:intergenic 50.0%
!! CGTCATACTGGTGTCATGGT+TGG + chr3_4:69483593-69483612 Msa0517760:CDS 50.0%
TTGGGCTTCGTCACCAACAT+AGG - chr3_4:69483636-69483655 None:intergenic 50.0%
GACGAAGCCCAATCCAAAAG+AGG + chr3_4:69483644-69483663 Msa0517760:CDS 50.0%
CTCAAGTACCCCATTGAGCA+CGG + chr3_4:69483677-69483696 Msa0517760:CDS 50.0%
GGGATGACATGGAGAAGATC+TGG + chr3_4:69483714-69483733 Msa0517760:CDS 50.0%
!! GAGCCTCAGTTAGAAGCACT+GGG - chr3_4:69483784-69483803 None:intergenic 50.0%
TGAGGCTCCACTTAACCCAA+AGG + chr3_4:69483796-69483815 Msa0517760:CDS 50.0%
ATTGTGTTGGATTCCGGCGA+TGG + chr3_4:69484011-69484030 Msa0517760:CDS 50.0%
CCCACATGCTATCCTTCGTT+TGG + chr3_4:69484073-69484092 Msa0517760:CDS 50.0%
GACCAGCAAGATCCAAACGA+AGG - chr3_4:69484088-69484107 None:intergenic 50.0%
ACATGTACCCTCTCTCAGTG+AGG - chr3_4:69484139-69484158 None:intergenic 50.0%
GGAAAAGGACTTCTGGGCAA+CGG - chr3_4:69484328-69484347 None:intergenic 50.0%
ATGATCGGAATGGAAGCTGC+TGG + chr3_4:69484356-69484375 Msa0517760:CDS 50.0%
CTCATACGGTCAGCAATACC+AGG - chr3_4:69484482-69484501 None:intergenic 50.0%
TGGATAAGAGGTGAGATCGG+AGG + chr3_4:69484873-69484892 Msa0517760:three_prime_UTR 50.0%
GGATAAGAGGTGAGATCGGA+GGG + chr3_4:69484874-69484893 Msa0517760:three_prime_UTR 50.0%
CCAACCTACAGACATCCAGT+GGG - chr3_4:69484938-69484957 None:intergenic 50.0%
ACCAACCTACAGACATCCAG+TGG - chr3_4:69484939-69484958 None:intergenic 50.0%
GCAAAAGATGGCAGATGCTG+AGG + chr3_4:69483374-69483393 Msa0517760:exon 50.0%
! TTGCTGGTGATGATGCTCCT+AGG + chr3_4:69483540-69483559 Msa0517760:CDS 50.0%
! TGCTGGTGATGATGCTCCTA+GGG + chr3_4:69483541-69483560 Msa0517760:CDS 50.0%
TGACACCAGTATGACGAGGT+CGG - chr3_4:69483589-69483608 None:intergenic 50.0%
! ACCTCGTCATACTGGTGTCA+TGG + chr3_4:69483589-69483608 Msa0517760:CDS 50.0%
ACCATGACACCAGTATGACG+AGG - chr3_4:69483593-69483612 None:intergenic 50.0%
!! CGTCATACTGGTGTCATGGT+TGG + chr3_4:69483593-69483612 Msa0517760:CDS 50.0%
TTGGGCTTCGTCACCAACAT+AGG - chr3_4:69483636-69483655 None:intergenic 50.0%
GACGAAGCCCAATCCAAAAG+AGG + chr3_4:69483644-69483663 Msa0517760:CDS 50.0%
CTCAAGTACCCCATTGAGCA+CGG + chr3_4:69483677-69483696 Msa0517760:CDS 50.0%
GGGATGACATGGAGAAGATC+TGG + chr3_4:69483714-69483733 Msa0517760:CDS 50.0%
!! GAGCCTCAGTTAGAAGCACT+GGG - chr3_4:69483784-69483803 None:intergenic 50.0%
TGAGGCTCCACTTAACCCAA+AGG + chr3_4:69483796-69483815 Msa0517760:CDS 50.0%
ATTGTGTTGGATTCCGGCGA+TGG + chr3_4:69484011-69484030 Msa0517760:CDS 50.0%
CCCACATGCTATCCTTCGTT+TGG + chr3_4:69484073-69484092 Msa0517760:CDS 50.0%
GACCAGCAAGATCCAAACGA+AGG - chr3_4:69484088-69484107 None:intergenic 50.0%
ACATGTACCCTCTCTCAGTG+AGG - chr3_4:69484139-69484158 None:intergenic 50.0%
GGAAAAGGACTTCTGGGCAA+CGG - chr3_4:69484328-69484347 None:intergenic 50.0%
ATGATCGGAATGGAAGCTGC+TGG + chr3_4:69484356-69484375 Msa0517760:CDS 50.0%
CTCATACGGTCAGCAATACC+AGG - chr3_4:69484482-69484501 None:intergenic 50.0%
TGGATAAGAGGTGAGATCGG+AGG + chr3_4:69484873-69484892 Msa0517760:three_prime_UTR 50.0%
GGATAAGAGGTGAGATCGGA+GGG + chr3_4:69484874-69484893 Msa0517760:three_prime_UTR 50.0%
CCAACCTACAGACATCCAGT+GGG - chr3_4:69484938-69484957 None:intergenic 50.0%
ACCAACCTACAGACATCCAG+TGG - chr3_4:69484939-69484958 None:intergenic 50.0%
TGTGTGCAGGCTGGATTTGC+TGG + chr3_4:69483524-69483543 Msa0517760:intron 55.0%
CGAGGTCGGCCAACAATACT+TGG - chr3_4:69483575-69483594 None:intergenic 55.0%
!! AGAAGCACTGGGTGCTCTTC+AGG - chr3_4:69483773-69483792 None:intergenic 55.0%
GCACCCAGTGCTTCTAACTG+AGG + chr3_4:69483778-69483797 Msa0517760:CDS 55.0%
! GGAGCCTCAGTTAGAAGCAC+TGG - chr3_4:69483785-69483804 None:intergenic 55.0%
CAATGTGCCCGCCATGTATG+TGG + chr3_4:69483859-69483878 Msa0517760:CDS 55.0%
TGGATGGCCACATACATGGC+GGG - chr3_4:69483869-69483888 None:intergenic 55.0%
CTGGATGGCCACATACATGG+CGG - chr3_4:69483870-69483889 None:intergenic 55.0%
AGCCTGGATGGCCACATACA+TGG - chr3_4:69483873-69483892 None:intergenic 55.0%
GTCCTCTCCCTCTATGCAAG+TGG + chr3_4:69483893-69483912 Msa0517760:CDS 55.0%
GACCACTTGCATAGAGGGAG+AGG - chr3_4:69483898-69483917 None:intergenic 55.0%
AGTGTGACTCACACCATCGC+CGG - chr3_4:69484027-69484046 None:intergenic 55.0%
TGTTCACCACCTCAGCTGAG+CGG + chr3_4:69484156-69484175 Msa0517760:CDS 55.0%
AATTTCCCGCTCAGCTGAGG+TGG - chr3_4:69484165-69484184 None:intergenic 55.0%
GACAATTTCCCGCTCAGCTG+AGG - chr3_4:69484168-69484187 None:intergenic 55.0%
CTTCATGCTGCTAGGAGCCA+GGG - chr3_4:69484519-69484538 None:intergenic 55.0%
TCTTCATGCTGCTAGGAGCC+AGG - chr3_4:69484520-69484539 None:intergenic 55.0%
AATGTTCTGTGGCAGCCCAC+TGG + chr3_4:69484920-69484939 Msa0517760:three_prime_UTR 55.0%
CCCACTGGATGTCTGTAGGT+TGG + chr3_4:69484935-69484954 Msa0517760:three_prime_UTR 55.0%
TATTCCCGGAAAGGGTTGCC+TGG + chr3_4:69485271-69485290 Msa0517760:three_prime_UTR 55.0%
TGTGTGCAGGCTGGATTTGC+TGG + chr3_4:69483524-69483543 Msa0517760:intron 55.0%
CGAGGTCGGCCAACAATACT+TGG - chr3_4:69483575-69483594 None:intergenic 55.0%
!! AGAAGCACTGGGTGCTCTTC+AGG - chr3_4:69483773-69483792 None:intergenic 55.0%
GCACCCAGTGCTTCTAACTG+AGG + chr3_4:69483778-69483797 Msa0517760:CDS 55.0%
! GGAGCCTCAGTTAGAAGCAC+TGG - chr3_4:69483785-69483804 None:intergenic 55.0%
CAATGTGCCCGCCATGTATG+TGG + chr3_4:69483859-69483878 Msa0517760:CDS 55.0%
TGGATGGCCACATACATGGC+GGG - chr3_4:69483869-69483888 None:intergenic 55.0%
CTGGATGGCCACATACATGG+CGG - chr3_4:69483870-69483889 None:intergenic 55.0%
AGCCTGGATGGCCACATACA+TGG - chr3_4:69483873-69483892 None:intergenic 55.0%
GTCCTCTCCCTCTATGCAAG+TGG + chr3_4:69483893-69483912 Msa0517760:CDS 55.0%
GACCACTTGCATAGAGGGAG+AGG - chr3_4:69483898-69483917 None:intergenic 55.0%
AGTGTGACTCACACCATCGC+CGG - chr3_4:69484027-69484046 None:intergenic 55.0%
TGTTCACCACCTCAGCTGAG+CGG + chr3_4:69484156-69484175 Msa0517760:CDS 55.0%
AATTTCCCGCTCAGCTGAGG+TGG - chr3_4:69484165-69484184 None:intergenic 55.0%
GACAATTTCCCGCTCAGCTG+AGG - chr3_4:69484168-69484187 None:intergenic 55.0%
CTTCATGCTGCTAGGAGCCA+GGG - chr3_4:69484519-69484538 None:intergenic 55.0%
TCTTCATGCTGCTAGGAGCC+AGG - chr3_4:69484520-69484539 None:intergenic 55.0%
AATGTTCTGTGGCAGCCCAC+TGG + chr3_4:69484920-69484939 Msa0517760:three_prime_UTR 55.0%
CCCACTGGATGTCTGTAGGT+TGG + chr3_4:69484935-69484954 Msa0517760:three_prime_UTR 55.0%
TATTCCCGGAAAGGGTTGCC+TGG + chr3_4:69485271-69485290 Msa0517760:three_prime_UTR 55.0%
GTTGGCCGACCTCGTCATAC+TGG + chr3_4:69483581-69483600 Msa0517760:CDS 60.0%
CGCCATGTATGTGGCCATCC+AGG + chr3_4:69483868-69483887 Msa0517760:CDS 60.0%
CATAGAGGGAGAGGACAGCC+TGG - chr3_4:69483889-69483908 None:intergenic 60.0%
GTTCACCACCTCAGCTGAGC+GGG + chr3_4:69484157-69484176 Msa0517760:CDS 60.0%
GAGCAAGGAGATCACTGCCC+TGG + chr3_4:69484499-69484518 Msa0517760:CDS 60.0%
CTGGCCCATCCATTGTCCAC+AGG + chr3_4:69484753-69484772 Msa0517760:CDS 60.0%
GCAGCCCACTGGATGTCTGT+AGG + chr3_4:69484931-69484950 Msa0517760:three_prime_UTR 60.0%
GCAACCAGGCAACCCTTTCC+GGG - chr3_4:69485278-69485297 None:intergenic 60.0%
GGCAACCAGGCAACCCTTTC+CGG - chr3_4:69485279-69485298 None:intergenic 60.0%
GTTGGCCGACCTCGTCATAC+TGG + chr3_4:69483581-69483600 Msa0517760:CDS 60.0%
CGCCATGTATGTGGCCATCC+AGG + chr3_4:69483868-69483887 Msa0517760:CDS 60.0%
CATAGAGGGAGAGGACAGCC+TGG - chr3_4:69483889-69483908 None:intergenic 60.0%
GTTCACCACCTCAGCTGAGC+GGG + chr3_4:69484157-69484176 Msa0517760:CDS 60.0%
GAGCAAGGAGATCACTGCCC+TGG + chr3_4:69484499-69484518 Msa0517760:CDS 60.0%
CTGGCCCATCCATTGTCCAC+AGG + chr3_4:69484753-69484772 Msa0517760:CDS 60.0%
GCAGCCCACTGGATGTCTGT+AGG + chr3_4:69484931-69484950 Msa0517760:three_prime_UTR 60.0%
GCAACCAGGCAACCCTTTCC+GGG - chr3_4:69485278-69485297 None:intergenic 60.0%
GGCAACCAGGCAACCCTTTC+CGG - chr3_4:69485279-69485298 None:intergenic 60.0%
GAGGGAGAGGACAGCCTGGA+TGG - chr3_4:69483885-69483904 None:intergenic 65.0%
GAGGGAGAGGACAGCCTGGA+TGG - chr3_4:69483885-69483904 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 69483374 69485406 69483374 ID=Msa0517760;Name=Msa0517760
chr3_4 mRNA 69483374 69485406 69483374 ID=Msa0517760-mRNA-1;Parent=Msa0517760;Name=Msa0517760-mRNA-1;_AED=0.05;_eAED=0.05;_QI=7|1|1|1|1|1|4|619|377
chr3_4 exon 69483374 69483440 69483374 ID=Msa0517760-mRNA-1:exon:18480;Parent=Msa0517760-mRNA-1
chr3_4 exon 69483533 69483926 69483533 ID=Msa0517760-mRNA-1:exon:18481;Parent=Msa0517760-mRNA-1
chr3_4 exon 69484009 69484622 69484009 ID=Msa0517760-mRNA-1:exon:18482;Parent=Msa0517760-mRNA-1
chr3_4 exon 69484722 69485406 69484722 ID=Msa0517760-mRNA-1:exon:18483;Parent=Msa0517760-mRNA-1
chr3_4 five_prime_UTR 69483374 69483380 69483374 ID=Msa0517760-mRNA-1:five_prime_utr;Parent=Msa0517760-mRNA-1
chr3_4 CDS 69483381 69483440 69483381 ID=Msa0517760-mRNA-1:cds;Parent=Msa0517760-mRNA-1
chr3_4 CDS 69483533 69483926 69483533 ID=Msa0517760-mRNA-1:cds;Parent=Msa0517760-mRNA-1
chr3_4 CDS 69484009 69484622 69484009 ID=Msa0517760-mRNA-1:cds;Parent=Msa0517760-mRNA-1
chr3_4 CDS 69484722 69484787 69484722 ID=Msa0517760-mRNA-1:cds;Parent=Msa0517760-mRNA-1
chr3_4 three_prime_UTR 69484788 69485406 69484788 ID=Msa0517760-mRNA-1:three_prime_utr;Parent=Msa0517760-mRNA-1
Gene Sequence

>Msa0517760

ATGGCAGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCAAGTATTGTTGGCCGACCTCGTCATACTGGTGTCATGGTTGGTATGGGTCAAAAGGATGCCTATGTTGGTGACGAAGCCCAATCCAAAAGAGGTATTCTTACTCTCAAGTACCCCATTGAGCACGGTATTGTCAGTAACTGGGATGACATGGAGAAGATCTGGCATCACACATTTTACAATGAATTGCGTGTTGCTCCTGAAGAGCACCCAGTGCTTCTAACTGAGGCTCCACTTAACCCAAAGGCCAATAGAGAAAAGATGACCCAAATCATGTTTGAGACTTTCAATGTGCCCGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTCTATGCAAGTGGTCGTACAACTGGTATTGTGTTGGATTCCGGCGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGTTATGCACTCCCACATGCTATCCTTCGTTTGGATCTTGCTGGTCGTGATCTAACTGATTCTTTGATGAAGATCCTCACTGAGAGAGGGTACATGTTCACCACCTCAGCTGAGCGGGAAATTGTCCGTGACATAAAGGAGAAGCTTGCATATGTTGCCTTGGATTATGAACAAGAACTTGAGACTGCAAAGAGCAGTTCTTCAATTGAGAAAAACTATGAACTTCCTGATGGACAAGTTATCACAATTGGAGCTGAGAGGTTCCGTTGCCCAGAAGTCCTTTTCCAACCATCAATGATCGGAATGGAAGCTGCTGGAATTCACGAGACCACCTACAACTCTATCATGAAGTGTGATGTGGATATCAGAAAGGATCTGTACGGCAACATTGTTCTTAGTGGTGGTTCAACTATGTTTCCTGGTATTGCTGACCGTATGAGCAAGGAGATCACTGCCCTGGCTCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTACAGTGTCTGGATTGGAGGATCAATCCTTGCTTCTCTCAGTACTTTCCAGCAGATGTGGATATCCAAGGGTGAATATGACGAGTCTGGCCCATCCATTGTCCACAGGAAATGCTTCTAA
Protein sequence

>Msa0517760

MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYMFTTSAEREIVRDIKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF*