AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1177780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1177780 MtrunA17_Chr8g0348471 96.729 214 7 0 2 215 145 358 1.02e-150 422
Msa1177780 MtrunA17_Chr7g0248471 66.981 212 67 1 3 214 143 351 4.43e-96 284
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1177780 AT2G46080.1 53.846 208 93 1 3 210 143 347 2.89e-70 218
Msa1177780 AT1G01550.1 50.262 191 86 2 5 195 145 326 5.16e-55 179
Msa1177780 AT1G01550.2 50.262 191 86 2 5 195 145 326 5.16e-55 179
Msa1177780 AT4G01360.1 37.104 221 114 5 8 212 136 347 6.99e-34 124

Find 47 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCTACATTTCTCAATTCT+AGG 0.226753 8_1:-10176590 None:intergenic
TTGAAGACTGTTGAGGAATT+AGG 0.327051 8_1:+10176980 Msa1177780:CDS
TTGCTATCGTCTCTGAGGTT+TGG 0.380646 8_1:+10177094 Msa1177780:CDS
TAAATGAGGAAATTAGAGTT+AGG 0.394328 8_1:+10176834 Msa1177780:CDS
CTACTTGCTGATCTATGTTT+CGG 0.404445 8_1:-10177144 None:intergenic
TTCTTGCTCAACTTTGTCTT+CGG 0.412172 8_1:-10176951 None:intergenic
TTGCAAGGAGATCCATTCCT+TGG 0.419978 8_1:-10177024 None:intergenic
ATTTACACCACCTTGGATAG+TGG 0.424354 8_1:-10176927 None:intergenic
TTGCATCAAAACCTTACCTT+TGG 0.435215 8_1:-10176666 None:intergenic
TTCTGTAAGCCTTTAAAAGC+AGG 0.447997 8_1:-10176806 None:intergenic
ATGTGCCTGACATGCATTCA+TGG 0.449122 8_1:+10176780 Msa1177780:CDS
ACCATTCTAGATGGTCTTGT+AGG 0.450952 8_1:+10176611 Msa1177780:CDS
TGCAAGGAGATCCATTCCTT+GGG 0.451475 8_1:-10177023 None:intergenic
GGCGCCCATGAATGCATGTC+AGG 0.451880 8_1:-10176785 None:intergenic
AAATGTAGCACCATTCTAGA+TGG 0.460812 8_1:+10176602 Msa1177780:CDS
TTCAAAGAAGTTGCTAGACT+TGG 0.464628 8_1:+10176757 Msa1177780:CDS
TGCTACATTTCTCAATTCTA+GGG 0.473899 8_1:-10176589 None:intergenic
CTTACAGAATCTTGTAAATG+AGG 0.487402 8_1:+10176820 Msa1177780:CDS
CATGTTCTTTACTCGATGAC+TGG 0.490294 8_1:+10176543 Msa1177780:CDS
ACTGTAAATGATCGTGTCGT+TGG 0.506521 8_1:+10177121 Msa1177780:CDS
CTCCTTGCAAAGGGAGTGGA+TGG 0.507754 8_1:+10177037 Msa1177780:CDS
AGGATCACTTGATCTTCCTA+AGG 0.519671 8_1:+10176631 Msa1177780:CDS
GAAATTAGAGTTAGGTTCTC+CGG 0.520380 8_1:+10176842 Msa1177780:CDS
CTTCGGTATTTACACCACCT+TGG 0.523873 8_1:-10176934 None:intergenic
CACGACTAGTCAAAACTGCT+TGG 0.526184 8_1:-10177066 None:intergenic
GGATCTCCTTGCAAAGGGAG+TGG 0.550124 8_1:+10177033 Msa1177780:CDS
TTTACACCACCTTGGATAGT+GGG 0.553081 8_1:-10176926 None:intergenic
GGAATGGATCTCCTTGCAAA+GGG 0.556996 8_1:+10177028 Msa1177780:CDS
GAGTTATATCCCACTATCCA+AGG 0.574910 8_1:+10176917 Msa1177780:CDS
TCCTACAAGACCATCTAGAA+TGG 0.579676 8_1:-10176612 None:intergenic
AGGAATGGATCTCCTTGCAA+AGG 0.587585 8_1:+10177027 Msa1177780:CDS
AACCATCCACTCCCTTTGCA+AGG 0.590151 8_1:-10177039 None:intergenic
TAGGGTTCTTAGCATTAATG+TGG 0.590455 8_1:-10176571 None:intergenic
AGAGAAGCTTTCCCAAGGAA+TGG 0.590563 8_1:+10177012 Msa1177780:CDS
ATCACATTTGAAGACTGTTG+AGG 0.597845 8_1:+10176973 Msa1177780:CDS
AGCTGTTGACGCTGTTGTGA+AGG 0.598706 8_1:+10176895 Msa1177780:CDS
GTTCTTTACTCGATGACTGG+AGG 0.600909 8_1:+10176546 Msa1177780:CDS
TGTGCCTGACATGCATTCAT+GGG 0.608851 8_1:+10176781 Msa1177780:CDS
ACACTTTGCTATCGTCTCTG+AGG 0.623338 8_1:+10177089 Msa1177780:CDS
GCAAGCTATGTATGGAGTCA+AGG 0.627369 8_1:+10176685 Msa1177780:CDS
TTAGAGTTAGGTTCTCCGGT+GGG 0.628606 8_1:+10176846 Msa1177780:CDS
ATTAGAGTTAGGTTCTCCGG+TGG 0.639898 8_1:+10176845 Msa1177780:CDS
CAATACAGAAAATTTCCCAC+CGG 0.653582 8_1:-10176861 None:intergenic
GCTGCAGAGAAGCTTTCCCA+AGG 0.657770 8_1:+10177007 Msa1177780:CDS
GACTGTTGAGGAATTAGGCG+TGG 0.680712 8_1:+10176985 Msa1177780:CDS
AGCTATGTATGGAGTCAAGG+TGG 0.695929 8_1:+10176688 Msa1177780:CDS
TTATATCCCACTATCCAAGG+TGG 0.780218 8_1:+10176920 Msa1177780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTATCTTTATTTTTTT+TGG - chr8_1:10175772-10175791 None:intergenic 10.0%
!! TCAAATATTTAACAATTTAT+TGG - chr8_1:10176079-10176098 None:intergenic 10.0%
!!! TTTTTATATGATAAATGTAA+AGG + chr8_1:10176231-10176250 Msa1177780:intron 10.0%
!!! ACTTTTATCTTTATTTTTTT+TGG - chr8_1:10175772-10175791 None:intergenic 10.0%
!! TCAAATATTTAACAATTTAT+TGG - chr8_1:10176079-10176098 None:intergenic 10.0%
!!! TTTTTATATGATAAATGTAA+AGG + chr8_1:10176231-10176250 Msa1177780:intron 10.0%
!!! GTAATTTTTTTACATATGAA+TGG - chr8_1:10175657-10175676 None:intergenic 15.0%
!!! GTAATTTTTTTACATATGAA+TGG - chr8_1:10175657-10175676 None:intergenic 15.0%
!! CATAACAATGTTAGAAAAAT+GGG - chr8_1:10175849-10175868 None:intergenic 20.0%
!! ACATAACAATGTTAGAAAAA+TGG - chr8_1:10175850-10175869 None:intergenic 20.0%
!! ATAACCTTTCAAGAATTAAA+TGG + chr8_1:10175877-10175896 Msa1177780:intron 20.0%
!! TAACCTTTCAAGAATTAAAT+GGG + chr8_1:10175878-10175897 Msa1177780:intron 20.0%
!!! TAAATTCAATTGGAGATTTT+GGG - chr8_1:10175953-10175972 None:intergenic 20.0%
!! ACAATTCTACTAAATTCAAT+TGG - chr8_1:10175963-10175982 None:intergenic 20.0%
!! AAACCATAATTACTTTCAAA+TGG - chr8_1:10176206-10176225 None:intergenic 20.0%
!!! TGTTTCTACTTTTTTGTAAA+TGG - chr8_1:10176321-10176340 None:intergenic 20.0%
!! ATTTACAAAAAAGTAGAAAC+AGG + chr8_1:10176320-10176339 Msa1177780:intron 20.0%
!! ATGTTAAAAAAAGACACAAA+AGG - chr8_1:10176383-10176402 None:intergenic 20.0%
!! CATAACAATGTTAGAAAAAT+GGG - chr8_1:10175849-10175868 None:intergenic 20.0%
!! ACATAACAATGTTAGAAAAA+TGG - chr8_1:10175850-10175869 None:intergenic 20.0%
!! ATAACCTTTCAAGAATTAAA+TGG + chr8_1:10175877-10175896 Msa1177780:intron 20.0%
!! TAACCTTTCAAGAATTAAAT+GGG + chr8_1:10175878-10175897 Msa1177780:intron 20.0%
!!! TAAATTCAATTGGAGATTTT+GGG - chr8_1:10175953-10175972 None:intergenic 20.0%
!! ACAATTCTACTAAATTCAAT+TGG - chr8_1:10175963-10175982 None:intergenic 20.0%
!! AAACCATAATTACTTTCAAA+TGG - chr8_1:10176206-10176225 None:intergenic 20.0%
!!! TGTTTCTACTTTTTTGTAAA+TGG - chr8_1:10176321-10176340 None:intergenic 20.0%
!! ATTTACAAAAAAGTAGAAAC+AGG + chr8_1:10176320-10176339 Msa1177780:intron 20.0%
!! ATGTTAAAAAAAGACACAAA+AGG - chr8_1:10176383-10176402 None:intergenic 20.0%
!! AAATTCAATTGGAGATTTTG+GGG - chr8_1:10175952-10175971 None:intergenic 25.0%
!! CTAAATTCAATTGGAGATTT+TGG - chr8_1:10175954-10175973 None:intergenic 25.0%
! GTTCCATTTGAAAGTAATTA+TGG + chr8_1:10176200-10176219 Msa1177780:intron 25.0%
! ATATTAACTGTGATTCAACT+AGG + chr8_1:10176357-10176376 Msa1177780:intron 25.0%
! NNNNNNCAAAGTCGTTTCTT+CGG + chr8_1:10176519-10176538 Msa1177780:intron 25.0%
! TAAATGAGGAAATTAGAGTT+AGG + chr8_1:10176834-10176853 Msa1177780:CDS 25.0%
!! AAATTCAATTGGAGATTTTG+GGG - chr8_1:10175952-10175971 None:intergenic 25.0%
!! CTAAATTCAATTGGAGATTT+TGG - chr8_1:10175954-10175973 None:intergenic 25.0%
! GTTCCATTTGAAAGTAATTA+TGG + chr8_1:10176200-10176219 Msa1177780:intron 25.0%
! ATATTAACTGTGATTCAACT+AGG + chr8_1:10176357-10176376 Msa1177780:intron 25.0%
! NNNNNNCAAAGTCGTTTCTT+CGG + chr8_1:10176519-10176538 Msa1177780:intron 25.0%
! TAAATGAGGAAATTAGAGTT+AGG + chr8_1:10176834-10176853 Msa1177780:CDS 25.0%
ATTACTAGTACTATGCACTT+TGG + chr8_1:10175672-10175691 Msa1177780:intron 30.0%
!!! TGCTGATTTTTTATCTTGAG+TGG + chr8_1:10175799-10175818 Msa1177780:intron 30.0%
AACAATGGTTTATCCAAAGA+GGG - chr8_1:10175826-10175845 None:intergenic 30.0%
TGTTAGAAAAATGGGAACAA+TGG - chr8_1:10175841-10175860 None:intergenic 30.0%
ATGCCCATTTAATTCTTGAA+AGG - chr8_1:10175884-10175903 None:intergenic 30.0%
TTCAAGAATTAAATGGGCAT+TGG + chr8_1:10175884-10175903 Msa1177780:intron 30.0%
TGAAAAAGGTTGCAACAAAT+TGG - chr8_1:10176257-10176276 None:intergenic 30.0%
TGCTACATTTCTCAATTCTA+GGG - chr8_1:10176592-10176611 None:intergenic 30.0%
! TTGGCAGAATTTTTAACCTT+AGG - chr8_1:10176650-10176669 None:intergenic 30.0%
AAGGTTAAAAATTCTGCCAA+AGG + chr8_1:10176650-10176669 Msa1177780:CDS 30.0%
TAAAAATTCTGCCAAAGGTA+AGG + chr8_1:10176655-10176674 Msa1177780:CDS 30.0%
CTTACAGAATCTTGTAAATG+AGG + chr8_1:10176820-10176839 Msa1177780:CDS 30.0%
!! ATTTTCTGTATTGATCGAGT+TGG + chr8_1:10176871-10176890 Msa1177780:CDS 30.0%
ATTACTAGTACTATGCACTT+TGG + chr8_1:10175672-10175691 Msa1177780:intron 30.0%
!!! TGCTGATTTTTTATCTTGAG+TGG + chr8_1:10175799-10175818 Msa1177780:intron 30.0%
AACAATGGTTTATCCAAAGA+GGG - chr8_1:10175826-10175845 None:intergenic 30.0%
TGTTAGAAAAATGGGAACAA+TGG - chr8_1:10175841-10175860 None:intergenic 30.0%
ATGCCCATTTAATTCTTGAA+AGG - chr8_1:10175884-10175903 None:intergenic 30.0%
TTCAAGAATTAAATGGGCAT+TGG + chr8_1:10175884-10175903 Msa1177780:intron 30.0%
TGAAAAAGGTTGCAACAAAT+TGG - chr8_1:10176257-10176276 None:intergenic 30.0%
TGCTACATTTCTCAATTCTA+GGG - chr8_1:10176592-10176611 None:intergenic 30.0%
! TTGGCAGAATTTTTAACCTT+AGG - chr8_1:10176650-10176669 None:intergenic 30.0%
AAGGTTAAAAATTCTGCCAA+AGG + chr8_1:10176650-10176669 Msa1177780:CDS 30.0%
TAAAAATTCTGCCAAAGGTA+AGG + chr8_1:10176655-10176674 Msa1177780:CDS 30.0%
CTTACAGAATCTTGTAAATG+AGG + chr8_1:10176820-10176839 Msa1177780:CDS 30.0%
!! ATTTTCTGTATTGATCGAGT+TGG + chr8_1:10176871-10176890 Msa1177780:CDS 30.0%
GAACAATGGTTTATCCAAAG+AGG - chr8_1:10175827-10175846 None:intergenic 35.0%
AGAATCTCTCAAAGTCTCAA+CGG + chr8_1:10175919-10175938 Msa1177780:intron 35.0%
!! TTTTCAAGAGAGCGATTCTA+TGG - chr8_1:10176022-10176041 None:intergenic 35.0%
TAGGGTTCTTAGCATTAATG+TGG - chr8_1:10176574-10176593 None:intergenic 35.0%
GTGCTACATTTCTCAATTCT+AGG - chr8_1:10176593-10176612 None:intergenic 35.0%
AAATGTAGCACCATTCTAGA+TGG + chr8_1:10176602-10176621 Msa1177780:CDS 35.0%
TTGCATCAAAACCTTACCTT+TGG - chr8_1:10176669-10176688 None:intergenic 35.0%
!! GTTTTGATGCAAGCTATGTA+TGG + chr8_1:10176677-10176696 Msa1177780:CDS 35.0%
TTCAAAGAAGTTGCTAGACT+TGG + chr8_1:10176757-10176776 Msa1177780:CDS 35.0%
! TTCTGTAAGCCTTTAAAAGC+AGG - chr8_1:10176809-10176828 None:intergenic 35.0%
GAAATTAGAGTTAGGTTCTC+CGG + chr8_1:10176842-10176861 Msa1177780:CDS 35.0%
CAATACAGAAAATTTCCCAC+CGG - chr8_1:10176864-10176883 None:intergenic 35.0%
TTCTTGCTCAACTTTGTCTT+CGG - chr8_1:10176954-10176973 None:intergenic 35.0%
ATCACATTTGAAGACTGTTG+AGG + chr8_1:10176973-10176992 Msa1177780:CDS 35.0%
TTGAAGACTGTTGAGGAATT+AGG + chr8_1:10176980-10176999 Msa1177780:CDS 35.0%
! CTACTTGCTGATCTATGTTT+CGG - chr8_1:10177147-10177166 None:intergenic 35.0%
GAACAATGGTTTATCCAAAG+AGG - chr8_1:10175827-10175846 None:intergenic 35.0%
AGAATCTCTCAAAGTCTCAA+CGG + chr8_1:10175919-10175938 Msa1177780:intron 35.0%
!! TTTTCAAGAGAGCGATTCTA+TGG - chr8_1:10176022-10176041 None:intergenic 35.0%
TAGGGTTCTTAGCATTAATG+TGG - chr8_1:10176574-10176593 None:intergenic 35.0%
GTGCTACATTTCTCAATTCT+AGG - chr8_1:10176593-10176612 None:intergenic 35.0%
AAATGTAGCACCATTCTAGA+TGG + chr8_1:10176602-10176621 Msa1177780:CDS 35.0%
TTGCATCAAAACCTTACCTT+TGG - chr8_1:10176669-10176688 None:intergenic 35.0%
!! GTTTTGATGCAAGCTATGTA+TGG + chr8_1:10176677-10176696 Msa1177780:CDS 35.0%
TTCAAAGAAGTTGCTAGACT+TGG + chr8_1:10176757-10176776 Msa1177780:CDS 35.0%
! TTCTGTAAGCCTTTAAAAGC+AGG - chr8_1:10176809-10176828 None:intergenic 35.0%
GAAATTAGAGTTAGGTTCTC+CGG + chr8_1:10176842-10176861 Msa1177780:CDS 35.0%
CAATACAGAAAATTTCCCAC+CGG - chr8_1:10176864-10176883 None:intergenic 35.0%
TTCTTGCTCAACTTTGTCTT+CGG - chr8_1:10176954-10176973 None:intergenic 35.0%
ATCACATTTGAAGACTGTTG+AGG + chr8_1:10176973-10176992 Msa1177780:CDS 35.0%
TTGAAGACTGTTGAGGAATT+AGG + chr8_1:10176980-10176999 Msa1177780:CDS 35.0%
! CTACTTGCTGATCTATGTTT+CGG - chr8_1:10177147-10177166 None:intergenic 35.0%
ACATATGAATGGCAGTGAAG+AGG - chr8_1:10175646-10175665 None:intergenic 40.0%
TACTGACCAAGTCAATGTCA+GGG - chr8_1:10175699-10175718 None:intergenic 40.0%
! GTTGAGACTTTGAGAGATTC+TGG - chr8_1:10175920-10175939 None:intergenic 40.0%
!! CAATTGGAGATTTTGGGGAA+TGG - chr8_1:10175947-10175966 None:intergenic 40.0%
CATGTTCTTTACTCGATGAC+TGG + chr8_1:10176543-10176562 Msa1177780:CDS 40.0%
!! ACCATTCTAGATGGTCTTGT+AGG + chr8_1:10176611-10176630 Msa1177780:CDS 40.0%
TCCTACAAGACCATCTAGAA+TGG - chr8_1:10176615-10176634 None:intergenic 40.0%
AGGATCACTTGATCTTCCTA+AGG + chr8_1:10176631-10176650 Msa1177780:CDS 40.0%
GAGTTATATCCCACTATCCA+AGG + chr8_1:10176917-10176936 Msa1177780:CDS 40.0%
TTATATCCCACTATCCAAGG+TGG + chr8_1:10176920-10176939 Msa1177780:CDS 40.0%
TTTACACCACCTTGGATAGT+GGG - chr8_1:10176929-10176948 None:intergenic 40.0%
ATTTACACCACCTTGGATAG+TGG - chr8_1:10176930-10176949 None:intergenic 40.0%
ACTGTAAATGATCGTGTCGT+TGG + chr8_1:10177121-10177140 Msa1177780:CDS 40.0%
ACATATGAATGGCAGTGAAG+AGG - chr8_1:10175646-10175665 None:intergenic 40.0%
TACTGACCAAGTCAATGTCA+GGG - chr8_1:10175699-10175718 None:intergenic 40.0%
! GTTGAGACTTTGAGAGATTC+TGG - chr8_1:10175920-10175939 None:intergenic 40.0%
!! CAATTGGAGATTTTGGGGAA+TGG - chr8_1:10175947-10175966 None:intergenic 40.0%
CATGTTCTTTACTCGATGAC+TGG + chr8_1:10176543-10176562 Msa1177780:CDS 40.0%
!! ACCATTCTAGATGGTCTTGT+AGG + chr8_1:10176611-10176630 Msa1177780:CDS 40.0%
TCCTACAAGACCATCTAGAA+TGG - chr8_1:10176615-10176634 None:intergenic 40.0%
AGGATCACTTGATCTTCCTA+AGG + chr8_1:10176631-10176650 Msa1177780:CDS 40.0%
GAGTTATATCCCACTATCCA+AGG + chr8_1:10176917-10176936 Msa1177780:CDS 40.0%
TTATATCCCACTATCCAAGG+TGG + chr8_1:10176920-10176939 Msa1177780:CDS 40.0%
TTTACACCACCTTGGATAGT+GGG - chr8_1:10176929-10176948 None:intergenic 40.0%
ATTTACACCACCTTGGATAG+TGG - chr8_1:10176930-10176949 None:intergenic 40.0%
ACTGTAAATGATCGTGTCGT+TGG + chr8_1:10177121-10177140 Msa1177780:CDS 40.0%
! TTTGGACCCTGACATTGACT+TGG + chr8_1:10175690-10175709 Msa1177780:intron 45.0%
CTACTGACCAAGTCAATGTC+AGG - chr8_1:10175700-10175719 None:intergenic 45.0%
TATCTTGAGTGGACCCTCTT+TGG + chr8_1:10175810-10175829 Msa1177780:intron 45.0%
GTTCTTTACTCGATGACTGG+AGG + chr8_1:10176546-10176565 Msa1177780:CDS 45.0%
GCAAGCTATGTATGGAGTCA+AGG + chr8_1:10176685-10176704 Msa1177780:CDS 45.0%
AGCTATGTATGGAGTCAAGG+TGG + chr8_1:10176688-10176707 Msa1177780:CDS 45.0%
! GTGTTTTCTGCAGCATTCTC+TGG + chr8_1:10176731-10176750 Msa1177780:CDS 45.0%
ATGTGCCTGACATGCATTCA+TGG + chr8_1:10176780-10176799 Msa1177780:CDS 45.0%
TGTGCCTGACATGCATTCAT+GGG + chr8_1:10176781-10176800 Msa1177780:CDS 45.0%
ATTAGAGTTAGGTTCTCCGG+TGG + chr8_1:10176845-10176864 Msa1177780:CDS 45.0%
TTAGAGTTAGGTTCTCCGGT+GGG + chr8_1:10176846-10176865 Msa1177780:CDS 45.0%
CTTCGGTATTTACACCACCT+TGG - chr8_1:10176937-10176956 None:intergenic 45.0%
AGAGAAGCTTTCCCAAGGAA+TGG + chr8_1:10177012-10177031 Msa1177780:CDS 45.0%
TGCAAGGAGATCCATTCCTT+GGG - chr8_1:10177026-10177045 None:intergenic 45.0%
TTGCAAGGAGATCCATTCCT+TGG - chr8_1:10177027-10177046 None:intergenic 45.0%
AGGAATGGATCTCCTTGCAA+AGG + chr8_1:10177027-10177046 Msa1177780:CDS 45.0%
GGAATGGATCTCCTTGCAAA+GGG + chr8_1:10177028-10177047 Msa1177780:CDS 45.0%
! CACGACTAGTCAAAACTGCT+TGG - chr8_1:10177069-10177088 None:intergenic 45.0%
! ACACTTTGCTATCGTCTCTG+AGG + chr8_1:10177089-10177108 Msa1177780:CDS 45.0%
!! TTGCTATCGTCTCTGAGGTT+TGG + chr8_1:10177094-10177113 Msa1177780:CDS 45.0%
! TTTGGACCCTGACATTGACT+TGG + chr8_1:10175690-10175709 Msa1177780:intron 45.0%
CTACTGACCAAGTCAATGTC+AGG - chr8_1:10175700-10175719 None:intergenic 45.0%
TATCTTGAGTGGACCCTCTT+TGG + chr8_1:10175810-10175829 Msa1177780:intron 45.0%
GTTCTTTACTCGATGACTGG+AGG + chr8_1:10176546-10176565 Msa1177780:CDS 45.0%
GCAAGCTATGTATGGAGTCA+AGG + chr8_1:10176685-10176704 Msa1177780:CDS 45.0%
AGCTATGTATGGAGTCAAGG+TGG + chr8_1:10176688-10176707 Msa1177780:CDS 45.0%
! GTGTTTTCTGCAGCATTCTC+TGG + chr8_1:10176731-10176750 Msa1177780:CDS 45.0%
ATGTGCCTGACATGCATTCA+TGG + chr8_1:10176780-10176799 Msa1177780:CDS 45.0%
TGTGCCTGACATGCATTCAT+GGG + chr8_1:10176781-10176800 Msa1177780:CDS 45.0%
ATTAGAGTTAGGTTCTCCGG+TGG + chr8_1:10176845-10176864 Msa1177780:CDS 45.0%
TTAGAGTTAGGTTCTCCGGT+GGG + chr8_1:10176846-10176865 Msa1177780:CDS 45.0%
CTTCGGTATTTACACCACCT+TGG - chr8_1:10176937-10176956 None:intergenic 45.0%
AGAGAAGCTTTCCCAAGGAA+TGG + chr8_1:10177012-10177031 Msa1177780:CDS 45.0%
TGCAAGGAGATCCATTCCTT+GGG - chr8_1:10177026-10177045 None:intergenic 45.0%
TTGCAAGGAGATCCATTCCT+TGG - chr8_1:10177027-10177046 None:intergenic 45.0%
AGGAATGGATCTCCTTGCAA+AGG + chr8_1:10177027-10177046 Msa1177780:CDS 45.0%
GGAATGGATCTCCTTGCAAA+GGG + chr8_1:10177028-10177047 Msa1177780:CDS 45.0%
! CACGACTAGTCAAAACTGCT+TGG - chr8_1:10177069-10177088 None:intergenic 45.0%
! ACACTTTGCTATCGTCTCTG+AGG + chr8_1:10177089-10177108 Msa1177780:CDS 45.0%
!! TTGCTATCGTCTCTGAGGTT+TGG + chr8_1:10177094-10177113 Msa1177780:CDS 45.0%
!! AAAAAAAAATTTAATGAAAA+AGG - chr8_1:10176271-10176290 None:intergenic 5.0%
!!! TTTTTTTTTAAATATTATAG+TGG + chr8_1:10176284-10176303 Msa1177780:intron 5.0%
!! AAAAAAAAATTTAATGAAAA+AGG - chr8_1:10176271-10176290 None:intergenic 5.0%
!!! TTTTTTTTTAAATATTATAG+TGG + chr8_1:10176284-10176303 Msa1177780:intron 5.0%
!! TCATGGGCGCCTGCTTTTAA+AGG + chr8_1:10176797-10176816 Msa1177780:CDS 50.0%
AGCTGTTGACGCTGTTGTGA+AGG + chr8_1:10176895-10176914 Msa1177780:CDS 50.0%
GACTGTTGAGGAATTAGGCG+TGG + chr8_1:10176985-10177004 Msa1177780:CDS 50.0%
AACCATCCACTCCCTTTGCA+AGG - chr8_1:10177042-10177061 None:intergenic 50.0%
!! TCATGGGCGCCTGCTTTTAA+AGG + chr8_1:10176797-10176816 Msa1177780:CDS 50.0%
AGCTGTTGACGCTGTTGTGA+AGG + chr8_1:10176895-10176914 Msa1177780:CDS 50.0%
GACTGTTGAGGAATTAGGCG+TGG + chr8_1:10176985-10177004 Msa1177780:CDS 50.0%
AACCATCCACTCCCTTTGCA+AGG - chr8_1:10177042-10177061 None:intergenic 50.0%
GCTGCAGAGAAGCTTTCCCA+AGG + chr8_1:10177007-10177026 Msa1177780:CDS 55.0%
GGATCTCCTTGCAAAGGGAG+TGG + chr8_1:10177033-10177052 Msa1177780:CDS 55.0%
CTCCTTGCAAAGGGAGTGGA+TGG + chr8_1:10177037-10177056 Msa1177780:CDS 55.0%
GCTGCAGAGAAGCTTTCCCA+AGG + chr8_1:10177007-10177026 Msa1177780:CDS 55.0%
GGATCTCCTTGCAAAGGGAG+TGG + chr8_1:10177033-10177052 Msa1177780:CDS 55.0%
CTCCTTGCAAAGGGAGTGGA+TGG + chr8_1:10177037-10177056 Msa1177780:CDS 55.0%
GGCGCCCATGAATGCATGTC+AGG - chr8_1:10176788-10176807 None:intergenic 60.0%
GGCGCCCATGAATGCATGTC+AGG - chr8_1:10176788-10176807 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 10175605 10177174 10175605 ID=Msa1177780;Name=Msa1177780
chr8_1 mRNA 10175605 10177174 10175605 ID=Msa1177780-mRNA-1;Parent=Msa1177780;Name=Msa1177780-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|0.5|1|1|2|0|215
chr8_1 exon 10175605 10175607 10175605 ID=Msa1177780-mRNA-1:exon:3485;Parent=Msa1177780-mRNA-1
chr8_1 exon 10176530 10177174 10176530 ID=Msa1177780-mRNA-1:exon:3486;Parent=Msa1177780-mRNA-1
chr8_1 CDS 10175605 10175607 10175605 ID=Msa1177780-mRNA-1:cds;Parent=Msa1177780-mRNA-1
chr8_1 CDS 10176530 10177174 10176530 ID=Msa1177780-mRNA-1:cds;Parent=Msa1177780-mRNA-1
Gene Sequence

>Msa1177780

ATGTCGTTTCTTCGGGCATGTTCTTTACTCGATGACTGGAGGCGCCACATTAATGCTAAGAACCCTAGAATTGAGAAATGTAGCACCATTCTAGATGGTCTTGTAGGATCACTTGATCTTCCTAAGGTTAAAAATTCTGCCAAAGGTAAGGTTTTGATGCAAGCTATGTATGGAGTCAAGGTGGAGACTGTATTTGTTTGCAGTGTGTTTTCTGCAGCATTCTCTGGCTCTTCAAAGAAGTTGCTAGACTTGGATGTGCCTGACATGCATTCATGGGCGCCTGCTTTTAAAGGCTTACAGAATCTTGTAAATGAGGAAATTAGAGTTAGGTTCTCCGGTGGGAAATTTTCTGTATTGATCGAGTTGGAAGCTGTTGACGCTGTTGTGAAGGAGTTATATCCCACTATCCAAGGTGGTGTAAATACCGAAGACAAAGTTGAGCAAGAATCACATTTGAAGACTGTTGAGGAATTAGGCGTGGCTGCAGAGAAGCTTTCCCAAGGAATGGATCTCCTTGCAAAGGGAGTGGATGGTTTCTTCCAAGCAGTTTTGACTAGTCGTGACACTTTGCTATCGTCTCTGAGGTTTGGCAAAACTGTAAATGATCGTGTCGTTGGCCGAAACATAGATCAGCAAGTAGTTTACTGA

Protein sequence

>Msa1177780

MSFLRACSLLDDWRRHINAKNPRIEKCSTILDGLVGSLDLPKVKNSAKGKVLMQAMYGVKVETVFVCSVFSAAFSGSSKKLLDLDVPDMHSWAPAFKGLQNLVNEEIRVRFSGGKFSVLIELEAVDAVVKELYPTIQGGVNTEDKVEQESHLKTVEELGVAAEKLSQGMDLLAKGVDGFFQAVLTSRDTLLSSLRFGKTVNDRVVGRNIDQQVVY*