Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171730 | I3S8S7 | 94.198 | 293 | 9 | 2 | 1 | 293 | 1 | 285 | 0.0 | 513 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0058270 | Msa1171730 | 0.804383 | 2.217881e-49 | -8.615850e-47 |
| Msa0613460 | Msa1171730 | 0.807052 | 6.102794e-50 | -8.615850e-47 |
| Msa0618670 | Msa1171730 | 0.802625 | 5.134120e-49 | -8.615850e-47 |
| Msa0658570 | Msa1171730 | 0.806715 | 7.190056e-50 | -8.615850e-47 |
| Msa0716750 | Msa1171730 | 0.805325 | 1.409864e-49 | -8.615850e-47 |
| Msa0735160 | Msa1171730 | 0.804112 | 2.525868e-49 | -8.615850e-47 |
| Msa0755070 | Msa1171730 | 0.804407 | 2.192240e-49 | -8.615850e-47 |
| Msa0772730 | Msa1171730 | 0.821495 | 3.917202e-53 | -8.615850e-47 |
| Msa0810760 | Msa1171730 | 0.812916 | 3.332970e-51 | -8.615850e-47 |
| Msa0818110 | Msa1171730 | 0.802092 | 6.610658e-49 | -8.615850e-47 |
| Msa0834440 | Msa1171730 | 0.807660 | 4.534530e-50 | -8.615850e-47 |
| Msa0140510 | Msa1171730 | -0.805120 | 1.556268e-49 | -8.615850e-47 |
| Msa0207310 | Msa1171730 | -0.836517 | 8.934563e-57 | -8.615850e-47 |
| Msa0381600 | Msa1171730 | -0.824922 | 6.206286e-54 | -8.615850e-47 |
| Msa0388030 | Msa1171730 | -0.834626 | 2.688571e-56 | -8.615850e-47 |
| Msa0392040 | Msa1171730 | -0.810811 | 9.575055e-51 | -8.615850e-47 |
| Msa0450350 | Msa1171730 | 0.800447 | 1.435401e-48 | -8.615850e-47 |
| Msa0994740 | Msa1171730 | 0.820359 | 7.150092e-53 | -8.615850e-47 |
| Msa1006850 | Msa1171730 | 0.803867 | 2.840404e-49 | -8.615850e-47 |
| Msa1021340 | Msa1171730 | 0.805865 | 1.085956e-49 | -8.615850e-47 |
| Msa0249560 | Msa1171730 | 0.806645 | 7.437554e-50 | -8.615850e-47 |
| Msa0268090 | Msa1171730 | 0.823486 | 1.349817e-53 | -8.615850e-47 |
| Msa1112370 | Msa1171730 | 0.801396 | 9.185800e-49 | -8.615850e-47 |
| Msa1131670 | Msa1171730 | -0.802144 | 6.447992e-49 | -8.615850e-47 |
| Msa1144720 | Msa1171730 | -0.808551 | 2.929428e-50 | -8.615850e-47 |
| Msa1171730 | Msa1219810 | 0.813116 | 3.011921e-51 | -8.615850e-47 |
| Msa1171730 | Msa1225730 | -0.808711 | 2.708638e-50 | -8.615850e-47 |
| Msa1171730 | Msa1262990 | -0.840527 | 8.239720e-58 | -8.615850e-47 |
| Msa1171730 | Msa1264860 | -0.852666 | 3.973506e-61 | -8.615850e-47 |
| Msa1171730 | Msa1301650 | 0.817606 | 3.023102e-52 | -8.615850e-47 |
| Msa1171730 | Msa1376890 | 0.811587 | 6.499503e-51 | -8.615850e-47 |
| Msa1171730 | Msa1381540 | 0.811337 | 7.365219e-51 | -8.615850e-47 |
| Msa1171730 | Msa1387590 | 0.814784 | 1.291317e-51 | -8.615850e-47 |
| Msa1171730 | Msa1390120 | 0.807267 | 5.495079e-50 | -8.615850e-47 |
| Msa1171730 | Msa1395530 | 0.800309 | 1.531064e-48 | -8.615850e-47 |
| Msa1171730 | Msa1397260 | 0.805803 | 1.119131e-49 | -8.615850e-47 |
| Msa1171730 | Msa1401140 | 0.812681 | 3.751037e-51 | -8.615850e-47 |
| Msa1171730 | Msa1404240 | -0.813167 | 2.935294e-51 | -8.615850e-47 |
| Msa1171730 | Msa1415360 | 0.811949 | 5.421035e-51 | -8.615850e-47 |
| Msa1171730 | Msa1445400 | -0.800526 | 1.382946e-48 | -8.615850e-47 |
| Msa1171730 | Msa1463650 | -0.824440 | 8.062951e-54 | -8.615850e-47 |
| Msa0521620 | Msa1171730 | 0.817350 | 3.450693e-52 | -8.615850e-47 |
| Msa0523930 | Msa1171730 | 0.802262 | 6.098071e-49 | -8.615850e-47 |
| Msa0567020 | Msa1171730 | 0.801273 | 9.730417e-49 | -8.615850e-47 |
| Msa0942550 | Msa1171730 | -0.810867 | 9.311338e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171730 | MtrunA17_Chr3g0117641 | 94.539 | 293 | 8 | 2 | 1 | 293 | 1 | 285 | 5.11e-177 | 489 |
| Msa1171730 | MtrunA17_Chr4g0059071 | 46.491 | 228 | 71 | 11 | 42 | 267 | 23 | 201 | 1.40e-43 | 147 |
| Msa1171730 | MtrunA17_Chr5g0413521 | 34.667 | 225 | 90 | 10 | 99 | 293 | 51 | 248 | 1.40e-20 | 88.6 |
| Msa1171730 | MtrunA17_Chr8g0365461 | 29.502 | 261 | 137 | 10 | 62 | 293 | 78 | 320 | 4.12e-18 | 82.8 |
| Msa1171730 | MtrunA17_Chr8g0365471 | 29.502 | 261 | 137 | 10 | 62 | 293 | 78 | 320 | 5.58e-18 | 82.4 |
| Msa1171730 | MtrunA17_Chr8g0365541 | 29.502 | 261 | 137 | 10 | 62 | 293 | 78 | 320 | 5.58e-18 | 82.4 |
| Msa1171730 | MtrunA17_Chr8g0365551 | 29.502 | 261 | 137 | 10 | 62 | 293 | 78 | 320 | 5.58e-18 | 82.4 |
| Msa1171730 | MtrunA17_Chr8g0365591 | 29.885 | 261 | 135 | 11 | 62 | 293 | 78 | 319 | 2.52e-17 | 80.9 |
| Msa1171730 | MtrunA17_Chr8g0365631 | 29.885 | 261 | 135 | 11 | 62 | 293 | 78 | 319 | 2.52e-17 | 80.9 |
| Msa1171730 | MtrunA17_Chr8g0365601 | 29.885 | 261 | 135 | 11 | 62 | 293 | 78 | 319 | 2.52e-17 | 80.9 |
| Msa1171730 | MtrunA17_Chr8g0365581 | 29.885 | 261 | 135 | 11 | 62 | 293 | 78 | 319 | 2.52e-17 | 80.9 |
| Msa1171730 | MtrunA17_Chr8g0365641 | 29.885 | 261 | 135 | 11 | 62 | 293 | 78 | 319 | 2.52e-17 | 80.9 |
| Msa1171730 | MtrunA17_Chr8g0365651 | 29.885 | 261 | 135 | 11 | 62 | 293 | 78 | 319 | 2.52e-17 | 80.9 |
| Msa1171730 | MtrunA17_Chr8g0365451 | 26.800 | 250 | 143 | 8 | 62 | 293 | 78 | 305 | 2.23e-16 | 77.8 |
| Msa1171730 | MtrunA17_Chr8g0365511 | 31.068 | 206 | 103 | 8 | 112 | 293 | 6 | 196 | 5.91e-15 | 72.0 |
| Msa1171730 | MtrunA17_Chr8g0365501 | 42.202 | 109 | 38 | 5 | 209 | 293 | 31 | 138 | 2.61e-11 | 60.5 |
| Msa1171730 | MtrunA17_Chr8g0365481 | 40.367 | 109 | 40 | 4 | 209 | 293 | 31 | 138 | 4.74e-11 | 59.7 |
| Msa1171730 | MtrunA17_Chr8g0365611 | 39.450 | 109 | 41 | 4 | 209 | 293 | 31 | 138 | 9.19e-11 | 58.9 |
| Msa1171730 | MtrunA17_Chr8g0365661 | 39.450 | 109 | 41 | 4 | 209 | 293 | 31 | 138 | 9.19e-11 | 58.9 |
| Msa1171730 | MtrunA17_Chr8g0365621 | 39.450 | 109 | 41 | 4 | 209 | 293 | 31 | 138 | 9.19e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171730 | AT5G62770.1 | 34.138 | 290 | 128 | 12 | 33 | 293 | 13 | 268 | 4.27e-27 | 107 |
| Msa1171730 | AT1G70420.1 | 29.276 | 304 | 135 | 12 | 31 | 293 | 8 | 272 | 1.04e-20 | 89.7 |
| Msa1171730 | AT3G27880.1 | 25.938 | 320 | 122 | 10 | 11 | 293 | 1 | 242 | 1.69e-14 | 72.0 |
| Msa1171730 | AT3G01513.1 | 29.050 | 179 | 94 | 5 | 134 | 288 | 47 | 216 | 3.97e-11 | 62.0 |
Find 69 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTCAATTCCAACCGAATT+AGG | 0.100199 | 8_1:-1653394 | None:intergenic |
| GAGAAAAGTCCAACCAATTC+AGG | 0.278046 | 8_1:-1653616 | None:intergenic |
| CGTCGTGTTGTTGTTTCTTC+AGG | 0.283860 | 8_1:-1653247 | None:intergenic |
| CGACGAGTAACTGCTGAAAC+TGG | 0.310454 | 8_1:-1652897 | None:intergenic |
| TTCTCTAATGTTAATGGGCT+TGG | 0.310521 | 8_1:+1653634 | Msa1171730:CDS |
| GCTCAATTCCAACCGAATTA+GGG | 0.337397 | 8_1:-1653393 | None:intergenic |
| TCCCTTCCGCTACACCTTCC+AGG | 0.340690 | 8_1:-1653354 | None:intergenic |
| TCGAAGACTGGATAATATAA+AGG | 0.352379 | 8_1:-1653169 | None:intergenic |
| AAGAGTAGTTCAGCAGGTTC+AGG | 0.376305 | 8_1:+1653421 | Msa1171730:CDS |
| GTTGTTGTTTCTTCAGGAAC+CGG | 0.406609 | 8_1:-1653241 | None:intergenic |
| CCAACCAATTCAGGCTTGTA+AGG | 0.415111 | 8_1:-1653607 | None:intergenic |
| CTGCGTGTGGAACCCTAATT+CGG | 0.421684 | 8_1:+1653381 | Msa1171730:CDS |
| TTTGCCTTACAAGCCTGAAT+TGG | 0.426620 | 8_1:+1653603 | Msa1171730:CDS |
| AACCGATGAGAGTGTGGACC+TGG | 0.461373 | 8_1:+1653336 | Msa1171730:CDS |
| GGATAGTGAATTTGAGTTTG+CGG | 0.468810 | 8_1:+1653075 | Msa1171730:CDS |
| TTGATAAAGCGCGTCTTCGT+CGG | 0.475206 | 8_1:-1652978 | None:intergenic |
| AGCGCGTCTTCGTCGGAATG+AGG | 0.479185 | 8_1:-1652971 | None:intergenic |
| GTGGAAAGAATCAGAGTAAG+AGG | 0.485953 | 8_1:+1653572 | Msa1171730:CDS |
| TGAGTTTGCGGTGGTTTCGA+CGG | 0.490223 | 8_1:+1653087 | Msa1171730:CDS |
| TTCTTCAGGAACCGGCGAAA+CGG | 0.490817 | 8_1:-1653233 | None:intergenic |
| GAGTAAAGTGTCGCCGGCGG+TGG | 0.493944 | 8_1:+1653540 | Msa1171730:CDS |
| TGTCGTTTCTTCCGTTTCGC+CGG | 0.501674 | 8_1:+1653222 | Msa1171730:CDS |
| CGAAAGAAGAGTAGTTCAGC+AGG | 0.505001 | 8_1:+1653415 | Msa1171730:CDS |
| AAGACGCGCTTTATCAACCT+TGG | 0.509179 | 8_1:+1652984 | Msa1171730:CDS |
| CGATGGGAAGGATAAACAAC+CGG | 0.517185 | 8_1:+1653489 | Msa1171730:CDS |
| CCTTACAAGCCTGAATTGGT+TGG | 0.518307 | 8_1:+1653607 | Msa1171730:CDS |
| CGAAGAAAGCAGCGAAGCTA+CGG | 0.524503 | 8_1:+1653297 | Msa1171730:CDS |
| CCGCAACTACAGAGAGATCA+AGG | 0.532253 | 8_1:+1652821 | Msa1171730:CDS |
| GATCGAAGCGGTGGAAGCTA+CGG | 0.532508 | 8_1:+1653443 | Msa1171730:CDS |
| CCACCGTCATTCTCCACCGC+CGG | 0.535765 | 8_1:-1653553 | None:intergenic |
| TTCCAGGTCCACACTCTCAT+CGG | 0.542516 | 8_1:-1653338 | None:intergenic |
| CCTTGATCTCTCTGTAGTTG+CGG | 0.545049 | 8_1:-1652821 | None:intergenic |
| AGACGCGCTTTATCAACCTT+GGG | 0.545606 | 8_1:+1652985 | Msa1171730:CDS |
| AGCATAAGCTATCATGATTG+AGG | 0.548556 | 8_1:+1652784 | None:intergenic |
| CTATTAAACGACGACGATGA+CGG | 0.549652 | 8_1:+1653199 | Msa1171730:CDS |
| TTCGGAATCTGAAACATCAC+CGG | 0.550899 | 8_1:-1653508 | None:intergenic |
| GCGCGTCTTCGTCGGAATGA+GGG | 0.555203 | 8_1:-1652970 | None:intergenic |
| CTAATGTTAATGGGCTTGGT+CGG | 0.556128 | 8_1:+1653638 | Msa1171730:CDS |
| TCGCCGGCGGTGGAGAATGA+CGG | 0.571185 | 8_1:+1653550 | Msa1171730:CDS |
| CGTCGGAATGAGGGTCCCAC+CGG | 0.576002 | 8_1:-1652961 | None:intergenic |
| CTAGAGTCATCGATGAGCTC+CGG | 0.578914 | 8_1:+1652942 | Msa1171730:CDS |
| GACCTGGAAGGTGTAGCGGA+AGG | 0.580315 | 8_1:+1653352 | Msa1171730:CDS |
| GAGTCATCGATGAGCTCCGG+TGG | 0.581333 | 8_1:+1652945 | Msa1171730:CDS |
| ATTGTGATTATGAGAAGAAG+CGG | 0.581372 | 8_1:-1652858 | None:intergenic |
| CGGAAGGGAGTTACTGCGTG+TGG | 0.582157 | 8_1:+1653368 | Msa1171730:CDS |
| GAGGAGTCATAGCGATGGGA+AGG | 0.587806 | 8_1:+1653477 | Msa1171730:CDS |
| GACGAGTAACTGCTGAAACT+GGG | 0.589040 | 8_1:-1652896 | None:intergenic |
| ACCTGGAAGGTGTAGCGGAA+GGG | 0.590239 | 8_1:+1653353 | Msa1171730:CDS |
| CAGGTTCAGGATCGAAGCGG+TGG | 0.593432 | 8_1:+1653434 | Msa1171730:CDS |
| TCGAACATCAGCGTTCGTAA+CGG | 0.599209 | 8_1:-1653277 | None:intergenic |
| GACGGCGAGTAAAGTGTCGC+CGG | 0.603567 | 8_1:+1653534 | Msa1171730:CDS |
| CAGTTTCAGCAGTTACTCGT+CGG | 0.608931 | 8_1:+1652898 | Msa1171730:CDS |
| ATCTTCAACCGATGAGAGTG+TGG | 0.611370 | 8_1:+1653330 | Msa1171730:CDS |
| TAACTGCTGAAACTGGGAGA+AGG | 0.615139 | 8_1:-1652890 | None:intergenic |
| TGTGGACCTGGAAGGTGTAG+CGG | 0.615287 | 8_1:+1653348 | Msa1171730:CDS |
| AAACGACAACGAAGAAGACG+AGG | 0.630831 | 8_1:+1653054 | Msa1171730:CDS |
| ACCGTTGTAGAAAATGTCAT+CGG | 0.634438 | 8_1:-1653137 | None:intergenic |
| TAGTGAATTTGAGTTTGCGG+TGG | 0.640807 | 8_1:+1653078 | Msa1171730:CDS |
| GGCGAGTAAAGTGTCGCCGG+CGG | 0.643569 | 8_1:+1653537 | Msa1171730:CDS |
| GTGTGGAACCCTAATTCGGT+TGG | 0.656223 | 8_1:+1653385 | Msa1171730:CDS |
| CCGGCGGTGGAGAATGACGG+TGG | 0.663067 | 8_1:+1653553 | Msa1171730:CDS |
| ATAAGCTATCATGATTGAGG+TGG | 0.665763 | 8_1:+1652787 | None:intergenic |
| GGATTCAACAAATTTCTCAG+TGG | 0.667196 | 8_1:+1653108 | Msa1171730:CDS |
| AGTCATCGATGAGCTCCGGT+GGG | 0.674608 | 8_1:+1652946 | Msa1171730:CDS |
| GTTTCAGATTCCGAAAACGA+CGG | 0.693270 | 8_1:+1653516 | Msa1171730:CDS |
| CAGCAGGTTCAGGATCGAAG+CGG | 0.701914 | 8_1:+1653431 | Msa1171730:CDS |
| GTTGTAGAAAATGTCATCGG+CGG | 0.703917 | 8_1:-1653134 | None:intergenic |
| GATGAGAGTGTGGACCTGGA+AGG | 0.711100 | 8_1:+1653340 | Msa1171730:CDS |
| GAGCTCATCGATGACTCTAG+CGG | 0.730084 | 8_1:-1652939 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GACTTTTCTCTAATGTTAAT+GGG | + | chr8_1:1653629-1653648 | Msa1171730:CDS | 25.0% |
| !! | GACTTTTCTCTAATGTTAAT+GGG | + | chr8_1:1653629-1653648 | Msa1171730:CDS | 25.0% |
| ATTGTGATTATGAGAAGAAG+CGG | - | chr8_1:1652861-1652880 | None:intergenic | 30.0% | |
| !!! | AATTTGTTGTCATTTTCCCA+AGG | - | chr8_1:1653004-1653023 | None:intergenic | 30.0% |
| TCGAAGACTGGATAATATAA+AGG | - | chr8_1:1653172-1653191 | None:intergenic | 30.0% | |
| !! | AATAGATTTTGATCGAAGAC+TGG | - | chr8_1:1653184-1653203 | None:intergenic | 30.0% |
| ! | GGACTTTTCTCTAATGTTAA+TGG | + | chr8_1:1653628-1653647 | Msa1171730:CDS | 30.0% |
| ATTGTGATTATGAGAAGAAG+CGG | - | chr8_1:1652861-1652880 | None:intergenic | 30.0% | |
| !!! | AATTTGTTGTCATTTTCCCA+AGG | - | chr8_1:1653004-1653023 | None:intergenic | 30.0% |
| TCGAAGACTGGATAATATAA+AGG | - | chr8_1:1653172-1653191 | None:intergenic | 30.0% | |
| !! | AATAGATTTTGATCGAAGAC+TGG | - | chr8_1:1653184-1653203 | None:intergenic | 30.0% |
| ! | GGACTTTTCTCTAATGTTAA+TGG | + | chr8_1:1653628-1653647 | Msa1171730:CDS | 30.0% |
| ! | GGATAGTGAATTTGAGTTTG+CGG | + | chr8_1:1653075-1653094 | Msa1171730:CDS | 35.0% |
| GGATTCAACAAATTTCTCAG+TGG | + | chr8_1:1653108-1653127 | Msa1171730:CDS | 35.0% | |
| ACCGTTGTAGAAAATGTCAT+CGG | - | chr8_1:1653140-1653159 | None:intergenic | 35.0% | |
| !! | TTCTCTAATGTTAATGGGCT+TGG | + | chr8_1:1653634-1653653 | Msa1171730:CDS | 35.0% |
| ! | GGATAGTGAATTTGAGTTTG+CGG | + | chr8_1:1653075-1653094 | Msa1171730:CDS | 35.0% |
| GGATTCAACAAATTTCTCAG+TGG | + | chr8_1:1653108-1653127 | Msa1171730:CDS | 35.0% | |
| ACCGTTGTAGAAAATGTCAT+CGG | - | chr8_1:1653140-1653159 | None:intergenic | 35.0% | |
| !! | TTCTCTAATGTTAATGGGCT+TGG | + | chr8_1:1653634-1653653 | Msa1171730:CDS | 35.0% |
| !!! | TTCGTTGTCGTTTTGCTTAG+TGG | - | chr8_1:1653047-1653066 | None:intergenic | 40.0% |
| ! | TAGTGAATTTGAGTTTGCGG+TGG | + | chr8_1:1653078-1653097 | Msa1171730:CDS | 40.0% |
| GTTGTAGAAAATGTCATCGG+CGG | - | chr8_1:1653137-1653156 | None:intergenic | 40.0% | |
| ! | GCCGATGACATTTTCTACAA+CGG | + | chr8_1:1653136-1653155 | Msa1171730:CDS | 40.0% |
| CTATTAAACGACGACGATGA+CGG | + | chr8_1:1653199-1653218 | Msa1171730:CDS | 40.0% | |
| !! | GTTGTTGTTTCTTCAGGAAC+CGG | - | chr8_1:1653244-1653263 | None:intergenic | 40.0% |
| GCTCAATTCCAACCGAATTA+GGG | - | chr8_1:1653396-1653415 | None:intergenic | 40.0% | |
| !! | TTTTGAGGAGTCATAGCGAT+GGG | + | chr8_1:1653473-1653492 | Msa1171730:CDS | 40.0% |
| ! | TTCGGAATCTGAAACATCAC+CGG | - | chr8_1:1653511-1653530 | None:intergenic | 40.0% |
| GTTTCAGATTCCGAAAACGA+CGG | + | chr8_1:1653516-1653535 | Msa1171730:CDS | 40.0% | |
| GTGGAAAGAATCAGAGTAAG+AGG | + | chr8_1:1653572-1653591 | Msa1171730:CDS | 40.0% | |
| TTTGCCTTACAAGCCTGAAT+TGG | + | chr8_1:1653603-1653622 | Msa1171730:CDS | 40.0% | |
| GAGAAAAGTCCAACCAATTC+AGG | - | chr8_1:1653619-1653638 | None:intergenic | 40.0% | |
| !! | CTAATGTTAATGGGCTTGGT+CGG | + | chr8_1:1653638-1653657 | Msa1171730:CDS | 40.0% |
| !!! | TTCGTTGTCGTTTTGCTTAG+TGG | - | chr8_1:1653047-1653066 | None:intergenic | 40.0% |
| ! | TAGTGAATTTGAGTTTGCGG+TGG | + | chr8_1:1653078-1653097 | Msa1171730:CDS | 40.0% |
| GTTGTAGAAAATGTCATCGG+CGG | - | chr8_1:1653137-1653156 | None:intergenic | 40.0% | |
| ! | GCCGATGACATTTTCTACAA+CGG | + | chr8_1:1653136-1653155 | Msa1171730:CDS | 40.0% |
| CTATTAAACGACGACGATGA+CGG | + | chr8_1:1653199-1653218 | Msa1171730:CDS | 40.0% | |
| !! | GTTGTTGTTTCTTCAGGAAC+CGG | - | chr8_1:1653244-1653263 | None:intergenic | 40.0% |
| GCTCAATTCCAACCGAATTA+GGG | - | chr8_1:1653396-1653415 | None:intergenic | 40.0% | |
| !! | TTTTGAGGAGTCATAGCGAT+GGG | + | chr8_1:1653473-1653492 | Msa1171730:CDS | 40.0% |
| ! | TTCGGAATCTGAAACATCAC+CGG | - | chr8_1:1653511-1653530 | None:intergenic | 40.0% |
| GTTTCAGATTCCGAAAACGA+CGG | + | chr8_1:1653516-1653535 | Msa1171730:CDS | 40.0% | |
| GTGGAAAGAATCAGAGTAAG+AGG | + | chr8_1:1653572-1653591 | Msa1171730:CDS | 40.0% | |
| TTTGCCTTACAAGCCTGAAT+TGG | + | chr8_1:1653603-1653622 | Msa1171730:CDS | 40.0% | |
| GAGAAAAGTCCAACCAATTC+AGG | - | chr8_1:1653619-1653638 | None:intergenic | 40.0% | |
| !! | CTAATGTTAATGGGCTTGGT+CGG | + | chr8_1:1653638-1653657 | Msa1171730:CDS | 40.0% |
| CCTTGATCTCTCTGTAGTTG+CGG | - | chr8_1:1652824-1652843 | None:intergenic | 45.0% | |
| TAACTGCTGAAACTGGGAGA+AGG | - | chr8_1:1652893-1652912 | None:intergenic | 45.0% | |
| GACGAGTAACTGCTGAAACT+GGG | - | chr8_1:1652899-1652918 | None:intergenic | 45.0% | |
| CAGTTTCAGCAGTTACTCGT+CGG | + | chr8_1:1652898-1652917 | Msa1171730:CDS | 45.0% | |
| TTGATAAAGCGCGTCTTCGT+CGG | - | chr8_1:1652981-1653000 | None:intergenic | 45.0% | |
| AAGACGCGCTTTATCAACCT+TGG | + | chr8_1:1652984-1653003 | Msa1171730:CDS | 45.0% | |
| AGACGCGCTTTATCAACCTT+GGG | + | chr8_1:1652985-1653004 | Msa1171730:CDS | 45.0% | |
| AAACGACAACGAAGAAGACG+AGG | + | chr8_1:1653054-1653073 | Msa1171730:CDS | 45.0% | |
| !! | CGTCGTGTTGTTGTTTCTTC+AGG | - | chr8_1:1653250-1653269 | None:intergenic | 45.0% |
| TCGAACATCAGCGTTCGTAA+CGG | - | chr8_1:1653280-1653299 | None:intergenic | 45.0% | |
| ATCTTCAACCGATGAGAGTG+TGG | + | chr8_1:1653330-1653349 | Msa1171730:CDS | 45.0% | |
| CGCTCAATTCCAACCGAATT+AGG | - | chr8_1:1653397-1653416 | None:intergenic | 45.0% | |
| CGAAAGAAGAGTAGTTCAGC+AGG | + | chr8_1:1653415-1653434 | Msa1171730:CDS | 45.0% | |
| AAGAGTAGTTCAGCAGGTTC+AGG | + | chr8_1:1653421-1653440 | Msa1171730:CDS | 45.0% | |
| !! | AGCTACGGAACTTGCTTTTG+AGG | + | chr8_1:1653458-1653477 | Msa1171730:CDS | 45.0% |
| !! | CTTTTGAGGAGTCATAGCGA+TGG | + | chr8_1:1653472-1653491 | Msa1171730:CDS | 45.0% |
| CGATGGGAAGGATAAACAAC+CGG | + | chr8_1:1653489-1653508 | Msa1171730:CDS | 45.0% | |
| !! | ACTTTACTCGCCGTCGTTTT+CGG | - | chr8_1:1653529-1653548 | None:intergenic | 45.0% |
| CCAACCAATTCAGGCTTGTA+AGG | - | chr8_1:1653610-1653629 | None:intergenic | 45.0% | |
| CCTTACAAGCCTGAATTGGT+TGG | + | chr8_1:1653607-1653626 | Msa1171730:CDS | 45.0% | |
| CCTTGATCTCTCTGTAGTTG+CGG | - | chr8_1:1652824-1652843 | None:intergenic | 45.0% | |
| TAACTGCTGAAACTGGGAGA+AGG | - | chr8_1:1652893-1652912 | None:intergenic | 45.0% | |
| GACGAGTAACTGCTGAAACT+GGG | - | chr8_1:1652899-1652918 | None:intergenic | 45.0% | |
| CAGTTTCAGCAGTTACTCGT+CGG | + | chr8_1:1652898-1652917 | Msa1171730:CDS | 45.0% | |
| TTGATAAAGCGCGTCTTCGT+CGG | - | chr8_1:1652981-1653000 | None:intergenic | 45.0% | |
| AAGACGCGCTTTATCAACCT+TGG | + | chr8_1:1652984-1653003 | Msa1171730:CDS | 45.0% | |
| AGACGCGCTTTATCAACCTT+GGG | + | chr8_1:1652985-1653004 | Msa1171730:CDS | 45.0% | |
| AAACGACAACGAAGAAGACG+AGG | + | chr8_1:1653054-1653073 | Msa1171730:CDS | 45.0% | |
| !! | CGTCGTGTTGTTGTTTCTTC+AGG | - | chr8_1:1653250-1653269 | None:intergenic | 45.0% |
| TCGAACATCAGCGTTCGTAA+CGG | - | chr8_1:1653280-1653299 | None:intergenic | 45.0% | |
| ATCTTCAACCGATGAGAGTG+TGG | + | chr8_1:1653330-1653349 | Msa1171730:CDS | 45.0% | |
| CGCTCAATTCCAACCGAATT+AGG | - | chr8_1:1653397-1653416 | None:intergenic | 45.0% | |
| CGAAAGAAGAGTAGTTCAGC+AGG | + | chr8_1:1653415-1653434 | Msa1171730:CDS | 45.0% | |
| AAGAGTAGTTCAGCAGGTTC+AGG | + | chr8_1:1653421-1653440 | Msa1171730:CDS | 45.0% | |
| !! | AGCTACGGAACTTGCTTTTG+AGG | + | chr8_1:1653458-1653477 | Msa1171730:CDS | 45.0% |
| !! | CTTTTGAGGAGTCATAGCGA+TGG | + | chr8_1:1653472-1653491 | Msa1171730:CDS | 45.0% |
| CGATGGGAAGGATAAACAAC+CGG | + | chr8_1:1653489-1653508 | Msa1171730:CDS | 45.0% | |
| !! | ACTTTACTCGCCGTCGTTTT+CGG | - | chr8_1:1653529-1653548 | None:intergenic | 45.0% |
| CCAACCAATTCAGGCTTGTA+AGG | - | chr8_1:1653610-1653629 | None:intergenic | 45.0% | |
| CCTTACAAGCCTGAATTGGT+TGG | + | chr8_1:1653607-1653626 | Msa1171730:CDS | 45.0% | |
| CCGCAACTACAGAGAGATCA+AGG | + | chr8_1:1652821-1652840 | Msa1171730:CDS | 50.0% | |
| CGACGAGTAACTGCTGAAAC+TGG | - | chr8_1:1652900-1652919 | None:intergenic | 50.0% | |
| GAGCTCATCGATGACTCTAG+CGG | - | chr8_1:1652942-1652961 | None:intergenic | 50.0% | |
| CTAGAGTCATCGATGAGCTC+CGG | + | chr8_1:1652942-1652961 | Msa1171730:CDS | 50.0% | |
| TGAGTTTGCGGTGGTTTCGA+CGG | + | chr8_1:1653087-1653106 | Msa1171730:CDS | 50.0% | |
| ! | TGTCGTTTCTTCCGTTTCGC+CGG | + | chr8_1:1653222-1653241 | Msa1171730:CDS | 50.0% |
| TTCTTCAGGAACCGGCGAAA+CGG | - | chr8_1:1653236-1653255 | None:intergenic | 50.0% | |
| CGAAGAAAGCAGCGAAGCTA+CGG | + | chr8_1:1653297-1653316 | Msa1171730:CDS | 50.0% | |
| TTCCAGGTCCACACTCTCAT+CGG | - | chr8_1:1653341-1653360 | None:intergenic | 50.0% | |
| CTGCGTGTGGAACCCTAATT+CGG | + | chr8_1:1653381-1653400 | Msa1171730:CDS | 50.0% | |
| GTGTGGAACCCTAATTCGGT+TGG | + | chr8_1:1653385-1653404 | Msa1171730:CDS | 50.0% | |
| CCGCAACTACAGAGAGATCA+AGG | + | chr8_1:1652821-1652840 | Msa1171730:CDS | 50.0% | |
| CGACGAGTAACTGCTGAAAC+TGG | - | chr8_1:1652900-1652919 | None:intergenic | 50.0% | |
| GAGCTCATCGATGACTCTAG+CGG | - | chr8_1:1652942-1652961 | None:intergenic | 50.0% | |
| CTAGAGTCATCGATGAGCTC+CGG | + | chr8_1:1652942-1652961 | Msa1171730:CDS | 50.0% | |
| TGAGTTTGCGGTGGTTTCGA+CGG | + | chr8_1:1653087-1653106 | Msa1171730:CDS | 50.0% | |
| ! | TGTCGTTTCTTCCGTTTCGC+CGG | + | chr8_1:1653222-1653241 | Msa1171730:CDS | 50.0% |
| TTCTTCAGGAACCGGCGAAA+CGG | - | chr8_1:1653236-1653255 | None:intergenic | 50.0% | |
| CGAAGAAAGCAGCGAAGCTA+CGG | + | chr8_1:1653297-1653316 | Msa1171730:CDS | 50.0% | |
| TTCCAGGTCCACACTCTCAT+CGG | - | chr8_1:1653341-1653360 | None:intergenic | 50.0% | |
| CTGCGTGTGGAACCCTAATT+CGG | + | chr8_1:1653381-1653400 | Msa1171730:CDS | 50.0% | |
| GTGTGGAACCCTAATTCGGT+TGG | + | chr8_1:1653385-1653404 | Msa1171730:CDS | 50.0% | |
| AGTCATCGATGAGCTCCGGT+GGG | + | chr8_1:1652946-1652965 | Msa1171730:CDS | 55.0% | |
| ! | AACCGATGAGAGTGTGGACC+TGG | + | chr8_1:1653336-1653355 | Msa1171730:CDS | 55.0% |
| ! | GATGAGAGTGTGGACCTGGA+AGG | + | chr8_1:1653340-1653359 | Msa1171730:CDS | 55.0% |
| ! | TGTGGACCTGGAAGGTGTAG+CGG | + | chr8_1:1653348-1653367 | Msa1171730:CDS | 55.0% |
| ! | ACCTGGAAGGTGTAGCGGAA+GGG | + | chr8_1:1653353-1653372 | Msa1171730:CDS | 55.0% |
| CAGCAGGTTCAGGATCGAAG+CGG | + | chr8_1:1653431-1653450 | Msa1171730:CDS | 55.0% | |
| GATCGAAGCGGTGGAAGCTA+CGG | + | chr8_1:1653443-1653462 | Msa1171730:CDS | 55.0% | |
| GAGGAGTCATAGCGATGGGA+AGG | + | chr8_1:1653477-1653496 | Msa1171730:CDS | 55.0% | |
| AGTCATCGATGAGCTCCGGT+GGG | + | chr8_1:1652946-1652965 | Msa1171730:CDS | 55.0% | |
| ! | AACCGATGAGAGTGTGGACC+TGG | + | chr8_1:1653336-1653355 | Msa1171730:CDS | 55.0% |
| ! | GATGAGAGTGTGGACCTGGA+AGG | + | chr8_1:1653340-1653359 | Msa1171730:CDS | 55.0% |
| ! | TGTGGACCTGGAAGGTGTAG+CGG | + | chr8_1:1653348-1653367 | Msa1171730:CDS | 55.0% |
| ! | ACCTGGAAGGTGTAGCGGAA+GGG | + | chr8_1:1653353-1653372 | Msa1171730:CDS | 55.0% |
| CAGCAGGTTCAGGATCGAAG+CGG | + | chr8_1:1653431-1653450 | Msa1171730:CDS | 55.0% | |
| GATCGAAGCGGTGGAAGCTA+CGG | + | chr8_1:1653443-1653462 | Msa1171730:CDS | 55.0% | |
| GAGGAGTCATAGCGATGGGA+AGG | + | chr8_1:1653477-1653496 | Msa1171730:CDS | 55.0% | |
| GAGTCATCGATGAGCTCCGG+TGG | + | chr8_1:1652945-1652964 | Msa1171730:CDS | 60.0% | |
| GCGCGTCTTCGTCGGAATGA+GGG | - | chr8_1:1652973-1652992 | None:intergenic | 60.0% | |
| AGCGCGTCTTCGTCGGAATG+AGG | - | chr8_1:1652974-1652993 | None:intergenic | 60.0% | |
| ! | GACCTGGAAGGTGTAGCGGA+AGG | + | chr8_1:1653352-1653371 | Msa1171730:CDS | 60.0% |
| TCCCTTCCGCTACACCTTCC+AGG | - | chr8_1:1653357-1653376 | None:intergenic | 60.0% | |
| CGGAAGGGAGTTACTGCGTG+TGG | + | chr8_1:1653368-1653387 | Msa1171730:CDS | 60.0% | |
| CAGGTTCAGGATCGAAGCGG+TGG | + | chr8_1:1653434-1653453 | Msa1171730:CDS | 60.0% | |
| !! | GACGGCGAGTAAAGTGTCGC+CGG | + | chr8_1:1653534-1653553 | Msa1171730:CDS | 60.0% |
| GAGTCATCGATGAGCTCCGG+TGG | + | chr8_1:1652945-1652964 | Msa1171730:CDS | 60.0% | |
| GCGCGTCTTCGTCGGAATGA+GGG | - | chr8_1:1652973-1652992 | None:intergenic | 60.0% | |
| AGCGCGTCTTCGTCGGAATG+AGG | - | chr8_1:1652974-1652993 | None:intergenic | 60.0% | |
| ! | GACCTGGAAGGTGTAGCGGA+AGG | + | chr8_1:1653352-1653371 | Msa1171730:CDS | 60.0% |
| TCCCTTCCGCTACACCTTCC+AGG | - | chr8_1:1653357-1653376 | None:intergenic | 60.0% | |
| CGGAAGGGAGTTACTGCGTG+TGG | + | chr8_1:1653368-1653387 | Msa1171730:CDS | 60.0% | |
| CAGGTTCAGGATCGAAGCGG+TGG | + | chr8_1:1653434-1653453 | Msa1171730:CDS | 60.0% | |
| !! | GACGGCGAGTAAAGTGTCGC+CGG | + | chr8_1:1653534-1653553 | Msa1171730:CDS | 60.0% |
| CGTCGGAATGAGGGTCCCAC+CGG | - | chr8_1:1652964-1652983 | None:intergenic | 65.0% | |
| !! | GGCGAGTAAAGTGTCGCCGG+CGG | + | chr8_1:1653537-1653556 | Msa1171730:CDS | 65.0% |
| !! | GAGTAAAGTGTCGCCGGCGG+TGG | + | chr8_1:1653540-1653559 | Msa1171730:CDS | 65.0% |
| TCGCCGGCGGTGGAGAATGA+CGG | + | chr8_1:1653550-1653569 | Msa1171730:CDS | 65.0% | |
| CCACCGTCATTCTCCACCGC+CGG | - | chr8_1:1653556-1653575 | None:intergenic | 65.0% | |
| CGTCGGAATGAGGGTCCCAC+CGG | - | chr8_1:1652964-1652983 | None:intergenic | 65.0% | |
| !! | GGCGAGTAAAGTGTCGCCGG+CGG | + | chr8_1:1653537-1653556 | Msa1171730:CDS | 65.0% |
| !! | GAGTAAAGTGTCGCCGGCGG+TGG | + | chr8_1:1653540-1653559 | Msa1171730:CDS | 65.0% |
| TCGCCGGCGGTGGAGAATGA+CGG | + | chr8_1:1653550-1653569 | Msa1171730:CDS | 65.0% | |
| CCACCGTCATTCTCCACCGC+CGG | - | chr8_1:1653556-1653575 | None:intergenic | 65.0% | |
| CCGGCGGTGGAGAATGACGG+TGG | + | chr8_1:1653553-1653572 | Msa1171730:CDS | 70.0% | |
| CCGGCGGTGGAGAATGACGG+TGG | + | chr8_1:1653553-1653572 | Msa1171730:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 1652797 | 1653678 | 1652797 | ID=Msa1171730;Name=Msa1171730 |
| chr8_1 | mRNA | 1652797 | 1653678 | 1652797 | ID=Msa1171730-mRNA-1;Parent=Msa1171730;Name=Msa1171730-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|293 |
| chr8_1 | exon | 1652797 | 1653678 | 1652797 | ID=Msa1171730-mRNA-1:exon:480;Parent=Msa1171730-mRNA-1 |
| chr8_1 | CDS | 1652797 | 1653678 | 1652797 | ID=Msa1171730-mRNA-1:cds;Parent=Msa1171730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
