AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0500470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0500470 MtrunA17_Chr3g0133981 98.017 807 16 0 1 807 1 807 0.0 1627
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0500470 AT5G42920.2 56.595 834 321 11 1 809 1 818 0.0 865
Msa0500470 AT5G42920.1 57.022 712 277 9 116 809 1 701 0.0 740
Msa0500470 AT1G45233.2 58.425 457 172 4 32 488 14 452 0.0 534

Find 190 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAAGCTTGAGCATCTTTC+AGG 0.161581 3_4:-40908227 None:intergenic
GAACAAAACAACAGCGAAAA+TGG 0.203576 3_4:+40906475 Msa0500470:exon
TAACTTACCAGTGTCCTTAT+TGG 0.208665 3_4:-40908262 None:intergenic
GCCTGTTAGTGGTGGGTTCT+TGG 0.218520 3_4:+40911789 Msa0500470:CDS
TCATTATCTTAAAGCTATTA+AGG 0.227514 3_4:+40906940 Msa0500470:CDS
GTGAACATCATCTTCCAATT+TGG 0.244867 3_4:-40909540 None:intergenic
GCACACTCCCTTGTGCAAAT+TGG 0.262600 3_4:+40910631 Msa0500470:CDS
TACGTTGCAGCTTCATAATT+TGG 0.262615 3_4:+40906904 Msa0500470:CDS
ACCGAATCCTTTATATCCTT+TGG 0.278208 3_4:-40907034 None:intergenic
TGATCAAACTTAGTCCTCTT+TGG 0.279549 3_4:-40910830 None:intergenic
TCTCTTTCGTGGATGGATTC+TGG 0.284635 3_4:+40911037 Msa0500470:CDS
ACAGCAAAAGAAAATCCTTT+TGG 0.310436 3_4:+40907975 Msa0500470:CDS
CCAATCCATCATTCTCAATA+TGG 0.315483 3_4:-40911290 None:intergenic
CCGATCCTCCTCAATCAAAA+TGG 0.317683 3_4:-40906837 None:intergenic
GACTTGTCAGGAACTTCTTT+CGG 0.323775 3_4:-40908011 None:intergenic
TTTGGAATCTTCTGAGGAAT+TGG 0.324635 3_4:-40906558 None:intergenic
TGCTCGCAGTCAAGCCAATA+AGG 0.325903 3_4:+40908248 Msa0500470:CDS
CTGCAAACATCATGCAAAAC+TGG 0.335266 3_4:+40907951 Msa0500470:CDS
CCCAAGTAGTGGTAGGTTCC+TGG 0.337637 3_4:+40911883 Msa0500470:exon
TTACTTCAATACGGCTTTCC+TGG 0.337870 3_4:+40912144 Msa0500470:three_prime_UTR
AATTTATTCCCCAATGATAC+AGG 0.341767 3_4:+40909812 Msa0500470:CDS
AGTAAATTTCGTGTCTTTCC+AGG 0.345778 3_4:-40911851 None:intergenic
TCAGGCACAAGTTCAATATC+AGG 0.346755 3_4:-40906989 None:intergenic
TGTGATTTACTCACAGCTAT+TGG 0.352560 3_4:+40908155 Msa0500470:CDS
GGGTGATTCTTCATCCGATT+TGG 0.352781 3_4:-40906576 None:intergenic
CCTGTTAGTGGTGGGTTCTT+GGG 0.353815 3_4:+40911790 Msa0500470:CDS
AGCTCGAGCCCTGTATCATT+GGG 0.354935 3_4:-40909821 None:intergenic
TGTCATGGATAGCTCCAAAT+TGG 0.361242 3_4:+40909526 Msa0500470:CDS
TGATAGTTCTGATTTCTTGC+TGG 0.365281 3_4:+40910934 Msa0500470:CDS
GGCACAGGTAGGGCTCTTAT+AGG 0.366498 3_4:-40910665 None:intergenic
CCCAAGAACCCACCACTAAC+AGG 0.369943 3_4:-40911790 None:intergenic
GAACTTCACGTCCTTTCAAA+TGG 0.381979 3_4:+40910012 Msa0500470:CDS
AAGGGGAAGAAGAAAGAAAA+GGG 0.385837 3_4:+40906436 Msa0500470:five_prime_UTR
CCTACAATCTCCAGATCAAT+AGG 0.388992 3_4:-40908201 None:intergenic
TTCCTTCACTTAATAAAGTT+AGG 0.391363 3_4:+40910888 Msa0500470:CDS
TGAAATTAAGCTAGCTTGCT+TGG 0.391939 3_4:-40910855 None:intergenic
TTGACAGATCAAGATCAGTA+TGG 0.393928 3_4:+40911206 Msa0500470:intron
TTGGAATCTTCTGAGGAATT+GGG 0.394799 3_4:-40906557 None:intergenic
AGATCGCGAAGGAGTTGTTT+AGG 0.399266 3_4:-40906677 None:intergenic
GCTCAATTTCGAGCTATATC+AGG 0.400382 3_4:+40907096 Msa0500470:CDS
ACGTAATTATGTTCAGTAAC+AGG 0.402014 3_4:-40911655 None:intergenic
AGATAAAGAGGAGCATGTTC+AGG 0.402679 3_4:+40910715 Msa0500470:CDS
GCTGCAGCGACCCTAGTAAT+AGG 0.410657 3_4:+40912101 Msa0500470:three_prime_UTR
AAGAGTGAAGATGTTGTATC+TGG 0.414049 3_4:+40910110 Msa0500470:CDS
TGTCCTGCAAAAGTGTTCCA+TGG 0.414215 3_4:+40910603 Msa0500470:CDS
TACTGAACATAATTACGTAT+TGG 0.421369 3_4:+40911660 Msa0500470:CDS
TCCTTGACTTCTACCCTCCT+TGG 0.421741 3_4:-40909599 None:intergenic
GTCCTCTTTGGAAGTAAAGT+TGG 0.423484 3_4:-40910818 None:intergenic
AAGCTCGAGCCCTGTATCAT+TGG 0.424127 3_4:-40909822 None:intergenic
CACATTTCTTTCATCTGCGT+TGG 0.425225 3_4:-40911095 None:intergenic
GGCTTATGCAAGCCTGTTAG+TGG 0.427169 3_4:+40911778 Msa0500470:CDS
GCCAGGAACCTACCACTACT+TGG 0.432085 3_4:-40911884 None:intergenic
ATTGTATGTGTTGGAGTAGA+AGG 0.432464 3_4:+40909755 Msa0500470:CDS
GGATGCTCCAAAGGATATAA+AGG 0.433541 3_4:+40907027 Msa0500470:CDS
ATAAGAATGAACCTATTACT+AGG 0.433616 3_4:-40912112 None:intergenic
TCCAAAGGATATAAAGGATT+CGG 0.434186 3_4:+40907033 Msa0500470:CDS
TCAGTATGGAATATCCTCTA+AGG 0.435454 3_4:+40911220 Msa0500470:CDS
CGGTGTCACAAAAGGAGAAC+TGG 0.442782 3_4:+40910769 Msa0500470:CDS
GTTGATGTAATTGAAAATTC+CGG 0.444747 3_4:+40910749 Msa0500470:CDS
ATCGGAGATGATTGATTCAA+TGG 0.448522 3_4:-40906627 None:intergenic
TTTCAAATGGGCTCAGCACC+TGG 0.449308 3_4:+40910025 Msa0500470:CDS
CCTATTGATCTGGAGATTGT+AGG 0.450944 3_4:+40908201 Msa0500470:CDS
TCAATGTCCTCACAGAATAT+CGG 0.451544 3_4:-40911936 None:intergenic
GAAAATTCCGGTGTCACAAA+AGG 0.454854 3_4:+40910761 Msa0500470:CDS
CTTTCCAGGAGATCGTCTTC+CGG 0.455333 3_4:-40911837 None:intergenic
CACAAAAGATTCCATGATTG+TGG 0.455385 3_4:+40912183 Msa0500470:three_prime_UTR
AGTAAAATCCACCGGCGCCT+TGG 0.456353 3_4:-40906882 None:intergenic
AAAGGGGAAGAAGAAAGAAA+AGG 0.457798 3_4:+40906435 Msa0500470:five_prime_UTR
TTGTATGCGTAATTCCTAGC+TGG 0.459235 3_4:-40908083 None:intergenic
GACGGAACGCGCCAAGGCGC+CGG 0.461594 3_4:+40906871 Msa0500470:CDS
ACACGAAATTTACTTCCAAC+TGG 0.462020 3_4:+40911860 Msa0500470:CDS
ATGGTCAGAGACGTAGAAAA+AGG 0.466929 3_4:+40909576 Msa0500470:CDS
AACTTCACGTCCTTTCAAAT+GGG 0.468507 3_4:+40910013 Msa0500470:CDS
CTTTGCAGAACCTATTGATC+TGG 0.474661 3_4:+40908191 Msa0500470:CDS
TAAGAATGAACCTATTACTA+GGG 0.474795 3_4:-40912111 None:intergenic
GTCCTGCAAAAGTGTTCCAT+GGG 0.475044 3_4:+40910604 Msa0500470:CDS
TCACTTCATCACTCTTCGTC+AGG 0.476768 3_4:+40906718 Msa0500470:CDS
TTCCTCTGAAAGATCTAGCC+AGG 0.481627 3_4:-40911901 None:intergenic
GTAATGAGTTTCGCAGGCTT+AGG 0.488419 3_4:-40909701 None:intergenic
GCCTAGTGAAGTTTCGTCTC+CGG 0.488424 3_4:+40910685 Msa0500470:CDS
CCTTGTGCAAATTGGATGGC+TGG 0.488621 3_4:+40910639 Msa0500470:CDS
TCGACTATTATTTAGATGAC+GGG 0.492059 3_4:+40911713 Msa0500470:CDS
GCTACATCATTGAATTTAGT+CGG 0.496566 3_4:+40912227 Msa0500470:three_prime_UTR
CTCAAGGAGAAAAGCTCAGT+TGG 0.496776 3_4:+40910187 Msa0500470:CDS
CTGGATAGTATGACGGAAGA+TGG 0.496785 3_4:+40910788 Msa0500470:CDS
CCATATTGAGAATGATGGAT+TGG 0.500477 3_4:+40911290 Msa0500470:CDS
CACAAAGTCTCTTTCGTGGA+TGG 0.500633 3_4:+40911030 Msa0500470:CDS
TGTGTTATAAACCACAATCA+TGG 0.501166 3_4:-40912194 None:intergenic
CATCCACGAAAGAGACTTTG+TGG 0.504004 3_4:-40911029 None:intergenic
TTGCATAAGATGTCATTGTC+AGG 0.506215 3_4:-40909791 None:intergenic
ACTCTTTGTTCAAGATGCTA+TGG 0.511192 3_4:+40909974 Msa0500470:CDS
GATGTGAAGGGAGACTTGTC+AGG 0.511452 3_4:-40908023 None:intergenic
GTGCCACAAAGTCTCTTTCG+TGG 0.511476 3_4:+40911026 Msa0500470:CDS
TTAAGAGACTTAAGATGTGA+AGG 0.514586 3_4:-40908036 None:intergenic
TTCCTCAGAAGATTCCAAAT+CGG 0.514850 3_4:+40906562 Msa0500470:CDS
GGAGCATGTTCAGGAATCAA+TGG 0.514864 3_4:+40910724 Msa0500470:CDS
TTCGACTATTATTTAGATGA+CGG 0.514880 3_4:+40911712 Msa0500470:CDS
TGCACTACCTTGGTTGATGT+TGG 0.517644 3_4:+40911757 Msa0500470:CDS
CTCATAATTTGATGCTCAAG+AGG 0.519703 3_4:+40907074 Msa0500470:CDS
GGAAGCAGTGGAGACACCTC+AGG 0.528192 3_4:-40910065 None:intergenic
ATCCGATTTGGAATCTTCTG+AGG 0.529566 3_4:-40906564 None:intergenic
AAATGGGCTCAGCACCTGGC+AGG 0.529594 3_4:+40910029 Msa0500470:CDS
AGATACAACATCTTCACTCT+TGG 0.532554 3_4:-40910108 None:intergenic
GACCTAACTTTATTAAGTGA+AGG 0.533202 3_4:-40910890 None:intergenic
ATCTTCTGAGGAATTGGGAA+AGG 0.534448 3_4:-40906552 None:intergenic
ATCACCGGAAGACGATCTCC+TGG 0.534779 3_4:+40911833 Msa0500470:CDS
GGAACGCGCCAAGGCGCCGG+TGG 0.534919 3_4:+40906874 Msa0500470:CDS
CTACCACTACTTGGGCCAGT+TGG 0.535290 3_4:-40911875 None:intergenic
TTCCAACTTTACTTCCAAAG+AGG 0.536943 3_4:+40910816 Msa0500470:CDS
ACAGCTATTGGCTCAGAAAG+AGG 0.537328 3_4:+40908167 Msa0500470:CDS
TGAATTTAGTCGGACAGCTA+TGG 0.539456 3_4:+40912237 Msa0500470:three_prime_UTR
GGTTTGCAATAGTCTCCAAA+AGG 0.539923 3_4:-40907990 None:intergenic
GCTGCTTCACTGTTATCAGC+GGG 0.541519 3_4:-40910086 None:intergenic
GCCAAGGAGGGTAGAAGTCA+AGG 0.542038 3_4:+40909598 Msa0500470:CDS
TCCTCTTTATCTATGATAGC+CGG 0.543176 3_4:-40910704 None:intergenic
CTGTTATCAGCGGGAAGCAG+TGG 0.544666 3_4:-40910077 None:intergenic
AATGCAGACGGAACGCGCCA+AGG 0.546272 3_4:+40906865 Msa0500470:CDS
TATGCAAGCCTGTTAGTGGT+GGG 0.547975 3_4:+40911782 Msa0500470:CDS
TCCGGCTATCATAGATAAAG+AGG 0.548495 3_4:+40910703 Msa0500470:CDS
AGGGCTCGAGCTTCCACACC+AGG 0.548560 3_4:+40909832 Msa0500470:CDS
CTCAGGCATTTCCACTGTCA+TGG 0.550033 3_4:+40909511 Msa0500470:intron
CTTAGCGTAATGAGTTTCGC+AGG 0.550291 3_4:-40909707 None:intergenic
TTATATCCTTTGGAGCATCC+CGG 0.550527 3_4:-40907024 None:intergenic
TTATGCAAGCCTGTTAGTGG+TGG 0.554168 3_4:+40911781 Msa0500470:CDS
GAGTACCATATTGAGAATGA+TGG 0.556346 3_4:+40911285 Msa0500470:CDS
CTTCCAACTGGCCCAAGTAG+TGG 0.557816 3_4:+40911872 Msa0500470:CDS
TACGCTAAGGTTTGAGTACG+TGG 0.557983 3_4:+40909721 Msa0500470:CDS
CTCACAGAATATCGGTATTG+TGG 0.558742 3_4:-40911928 None:intergenic
AAGGACAAATTGCACTACCT+TGG 0.559183 3_4:+40911747 Msa0500470:CDS
GGCTGCTTCACTGTTATCAG+CGG 0.559248 3_4:-40910087 None:intergenic
GTCAAGGAGAGCCCTGACCA+AGG 0.564171 3_4:+40909614 Msa0500470:CDS
AAATGTGAATCTAGAAGCCA+AGG 0.564314 3_4:+40911111 Msa0500470:CDS
CTGCGAAACTCATTACGCTA+AGG 0.568154 3_4:+40909708 Msa0500470:CDS
AGGTGCTGAGCCCATTTGAA+AGG 0.573624 3_4:-40910023 None:intergenic
TAAATCACATAAAGAGCTGG+TGG 0.575843 3_4:-40908141 None:intergenic
GCAAGAAATCAATTCCTGCC+AGG 0.576163 3_4:-40910043 None:intergenic
AAGTTGAATATTGTATGTGT+TGG 0.576638 3_4:+40909746 Msa0500470:CDS
GAAGACGGTGAGATAGAAGA+AGG 0.577436 3_4:+40906497 Msa0500470:CDS
TGCACGGATTTAAGTATGCT+AGG 0.577573 3_4:+40912025 Msa0500470:three_prime_UTR
AGGAATTGATTTCTTGCCTG+AGG 0.580835 3_4:+40910049 Msa0500470:CDS
GAGTAAATCACATAAAGAGC+TGG 0.582503 3_4:-40908144 None:intergenic
TGAAGTCAAGGAATGATGAC+GGG 0.582715 3_4:-40911971 None:intergenic
AAGGGAGTGTGCAAAGCCCA+TGG 0.583753 3_4:-40910620 None:intergenic
TAAGAGACTTAAGATGTGAA+GGG 0.584117 3_4:-40908035 None:intergenic
TCAAGGAGAGCCCTGACCAA+GGG 0.584919 3_4:+40909615 Msa0500470:CDS
GGAGTAGAAGGATCTAATGA+TGG 0.587145 3_4:+40909767 Msa0500470:CDS
TCTGAGAAATTGCAGTTGCA+CGG 0.590669 3_4:+40912009 Msa0500470:three_prime_UTR
ACTCCCTTGTGCAAATTGGA+TGG 0.592687 3_4:+40910635 Msa0500470:CDS
AGAAGAAGGTTCAATCGCCA+TGG 0.593173 3_4:+40906511 Msa0500470:CDS
GTGAAGTCAAGGAATGATGA+CGG 0.594695 3_4:-40911972 None:intergenic
GAAAGCACTCAAACCTGGTG+TGG 0.596775 3_4:-40909845 None:intergenic
GACGAAACTTCACTAGGCAC+AGG 0.597712 3_4:-40910680 None:intergenic
GACGAAGAGTGATGAAGTGA+AGG 0.597855 3_4:-40906715 None:intergenic
AAACTTCACTAGGCACAGGT+AGG 0.600562 3_4:-40910676 None:intergenic
CAACTGGCCCAAGTAGTGGT+AGG 0.604658 3_4:+40911876 Msa0500470:exon
CCAGCCATCCAATTTGCACA+AGG 0.607211 3_4:-40910639 None:intergenic
TCAATATGGTACTCCCCAGA+AGG 0.607678 3_4:-40911276 None:intergenic
AACTTCACTAGGCACAGGTA+GGG 0.609874 3_4:-40910675 None:intergenic
AATCTCTTACAAAACTTGAG+TGG 0.610169 3_4:+40910573 Msa0500470:CDS
ATGACGGGTTATCATCTGAA+AGG 0.619159 3_4:+40911728 Msa0500470:CDS
TTCTGCAGAGAATTCGCTCA+AGG 0.620044 3_4:+40910171 Msa0500470:CDS
ATTTATTCCCCAATGATACA+GGG 0.620305 3_4:+40909813 Msa0500470:CDS
GTGGATGGATTCTGGTGTGA+AGG 0.621402 3_4:+40911045 Msa0500470:CDS
AGGAGAACTGGATAGTATGA+CGG 0.623615 3_4:+40910781 Msa0500470:CDS
TTGCCTGTACAAAACCAGCT+AGG 0.626584 3_4:+40908069 Msa0500470:CDS
CCAGGAACCTACCACTACTT+GGG 0.627888 3_4:-40911883 None:intergenic
AGCTATGGTAGGATGTAATG+TGG 0.629385 3_4:+40912252 Msa0500470:three_prime_UTR
TTCCTGGCTAGATCTTTCAG+AGG 0.630405 3_4:+40911899 Msa0500470:three_prime_UTR
TTTAGTCGGACAGCTATGGT+AGG 0.634955 3_4:+40912241 Msa0500470:three_prime_UTR
AGTCAAGCCAATAAGGACAC+TGG 0.636523 3_4:+40908255 Msa0500470:CDS
GGATCGGGTTAAAATGCAGA+CGG 0.649067 3_4:+40906853 Msa0500470:CDS
GTTCACGATGATGAAGAAGA+TGG 0.649163 3_4:+40909557 Msa0500470:CDS
CTGTCTGTACTCGATTCTGT+TGG 0.651052 3_4:-40910148 None:intergenic
TGCAACGTAGTAAAATCCAC+CGG 0.652794 3_4:-40906890 None:intergenic
TGAACTTCGTGCAATAGAAG+CGG 0.654739 3_4:+40911323 Msa0500470:CDS
CAAGGAGAGCCCTGACCAAG+GGG 0.657687 3_4:+40909616 Msa0500470:CDS
CAGATCAATAGGTTCTGCAA+AGG 0.660500 3_4:-40908190 None:intergenic
ACTTCGTGCAATAGAAGCGG+AGG 0.668958 3_4:+40911326 Msa0500470:CDS
TTTGAGTAACGAGATCGCGA+AGG 0.671039 3_4:-40906688 None:intergenic
ACAACAGCGAAAATGGAAGA+CGG 0.671179 3_4:+40906482 Msa0500470:exon
CAGCCATCCAATTTGCACAA+GGG 0.676174 3_4:-40910638 None:intergenic
TTTGGAGCTATCCATGACAG+TGG 0.677285 3_4:-40909522 None:intergenic
TTGAGAATGATGGATTGGAA+TGG 0.679880 3_4:+40911295 Msa0500470:CDS
TAAATAATAGTCGAACAACA+TGG 0.681981 3_4:-40911704 None:intergenic
GCCGGAGACGAAACTTCACT+AGG 0.682325 3_4:-40910686 None:intergenic
GCATAAGCCAACATCAACCA+AGG 0.685956 3_4:-40911764 None:intergenic
GCTCGAGCCCTGTATCATTG+GGG 0.698274 3_4:-40909820 None:intergenic
ACGGATTTAAGTATGCTAGG+AGG 0.706111 3_4:+40912028 Msa0500470:three_prime_UTR
CACAATACCGATATTCTGTG+AGG 0.731721 3_4:+40911929 Msa0500470:three_prime_UTR
AAGGAGAGCCCTGACCAAGG+GGG 0.746053 3_4:+40909617 Msa0500470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAAAAATTATGTTTATAT+AGG - chr3_4:40909202-40909221 None:intergenic 10.0%
!!! ATAAATTTTGTAGATAAAAA+GGG - chr3_4:40911148-40911167 None:intergenic 10.0%
!!! AATAAATTTTGTAGATAAAA+AGG - chr3_4:40911149-40911168 None:intergenic 10.0%
!!! TATTTAACTTTTTTTATCTT+TGG - chr3_4:40911502-40911521 None:intergenic 10.0%
!!! TTATTAATTTTACTTCAATA+CGG + chr3_4:40912135-40912154 Msa0500470:three_prime_UTR 10.0%
!! AAAATATTACCTTGAATATT+TGG + chr3_4:40907141-40907160 Msa0500470:intron 15.0%
!!! CTTTGAAATTTAAATACTAT+GGG - chr3_4:40907488-40907507 None:intergenic 15.0%
!!! TCTTTGAAATTTAAATACTA+TGG - chr3_4:40907489-40907508 None:intergenic 15.0%
!! CCATTTATATAAATATAATC+CGG - chr3_4:40908370-40908389 None:intergenic 15.0%
!! GATTATATTTATATAAATGG+TGG + chr3_4:40908370-40908389 Msa0500470:intron 15.0%
!!! ATCTAATTGTATTTTTTAAC+TGG - chr3_4:40908436-40908455 None:intergenic 15.0%
!!! GTTTTAATTTGTAACATATA+TGG - chr3_4:40908471-40908490 None:intergenic 15.0%
!! TGAATCTATTTAAATTTCAA+GGG - chr3_4:40908681-40908700 None:intergenic 15.0%
!! TTGAAATTTAAATAGATTCA+CGG + chr3_4:40908681-40908700 Msa0500470:intron 15.0%
!! AAAAATCAATTAATGTTTGA+AGG + chr3_4:40908912-40908931 Msa0500470:intron 15.0%
!!! TTTTAAGAAAGAAAACAAAA+AGG + chr3_4:40908938-40908957 Msa0500470:intron 15.0%
!!! TTTTAATAAATATAGACCAT+TGG + chr3_4:40909106-40909125 Msa0500470:intron 15.0%
!! AAAAATTATGTTTATATAGG+TGG - chr3_4:40909199-40909218 None:intergenic 15.0%
!! TTATCTACAAAATTTATTCA+AGG + chr3_4:40911151-40911170 Msa0500470:intron 15.0%
!! TTAGAAATGAAAACATTAAT+AGG - chr3_4:40911601-40911620 None:intergenic 15.0%
!!! TTTTAGTTGAATTGTGAAAT+TGG - chr3_4:40906758-40906777 None:intergenic 20.0%
!! TCAACTAAAAAATTACAGTT+TGG + chr3_4:40906768-40906787 Msa0500470:intron 20.0%
!!! TGTTTTCTTCTCAATTTTAT+AGG + chr3_4:40906805-40906824 Msa0500470:intron 20.0%
!! TCATTATCTTAAAGCTATTA+AGG + chr3_4:40906940-40906959 Msa0500470:CDS 20.0%
!!! AAGAAATGTGCATTTTATAT+AGG + chr3_4:40907183-40907202 Msa0500470:intron 20.0%
!!! TTTCATAAGTTTTCTAAGAT+AGG - chr3_4:40907352-40907371 None:intergenic 20.0%
!! CCGGATTATATTTATATAAA+TGG + chr3_4:40908367-40908386 Msa0500470:intron 20.0%
!! AAAATAGGTTTAGAGATTTA+AGG - chr3_4:40908570-40908589 None:intergenic 20.0%
!! GTGAATCTATTTAAATTTCA+AGG - chr3_4:40908682-40908701 None:intergenic 20.0%
!!! GTTTTTTTTATCAATGTTGA+TGG + chr3_4:40908973-40908992 Msa0500470:intron 20.0%
!! TCAGTATTAAGATATTCAAA+TGG - chr3_4:40909411-40909430 None:intergenic 20.0%
!!! TGATTTTATTTTTACTACTC+AGG + chr3_4:40909494-40909513 Msa0500470:intron 20.0%
!!! CATTGATAATGATTTTAAGT+GGG - chr3_4:40909658-40909677 None:intergenic 20.0%
!!! ACATTGATAATGATTTTAAG+TGG - chr3_4:40909659-40909678 None:intergenic 20.0%
!! TTAAAATTTGTGGAATTCTT+TGG + chr3_4:40910528-40910547 Msa0500470:intron 20.0%
!! AAATTTATTCAAGGATCTAT+TGG + chr3_4:40911160-40911179 Msa0500470:intron 20.0%
!! TCTGTCAAAAAATAAAATCT+AGG - chr3_4:40911194-40911213 None:intergenic 20.0%
!!! TGTTTTCATTTCTAAATTGT+AGG + chr3_4:40911606-40911625 Msa0500470:intron 20.0%
! TACAAAATGCCAAATATTCA+AGG - chr3_4:40907153-40907172 None:intergenic 25.0%
! AATAAGTTGTTTATCCAAAC+AGG - chr3_4:40907210-40907229 None:intergenic 25.0%
!!! TAAATTTTGAGAGACTGTTT+GGG - chr3_4:40907427-40907446 None:intergenic 25.0%
!!! ATAAATTTTGAGAGACTGTT+TGG - chr3_4:40907428-40907447 None:intergenic 25.0%
! TTTCAAAGAGAATGTGATAT+TGG + chr3_4:40907500-40907519 Msa0500470:intron 25.0%
! ATCAACATATCAAGTAACTT+TGG - chr3_4:40907681-40907700 None:intergenic 25.0%
! TCTAAAAGATGAATGAATGA+AGG - chr3_4:40907832-40907851 None:intergenic 25.0%
! TGCATATAAGAAGAATTGTA+AGG - chr3_4:40907908-40907927 None:intergenic 25.0%
!!! ACGTGAATTTTAACATTCTT+TGG + chr3_4:40908293-40908312 Msa0500470:intron 25.0%
! ATACAATTAGATCAAATCTC+TGG + chr3_4:40908444-40908463 Msa0500470:intron 25.0%
!!! AGATTATGTGTGGAATTTTT+TGG - chr3_4:40908499-40908518 None:intergenic 25.0%
!! TAAACCTATTTTCCATATGT+GGG + chr3_4:40908578-40908597 Msa0500470:intron 25.0%
! TAAGAAAGAAAACAAAAAGG+AGG + chr3_4:40908941-40908960 Msa0500470:intron 25.0%
! AAGTTGAATATTGTATGTGT+TGG + chr3_4:40909746-40909765 Msa0500470:CDS 25.0%
! ATGGAAGATAAATATTGAGT+TGG - chr3_4:40909921-40909940 None:intergenic 25.0%
! TTCCATTTCTTTCATTTGAA+TGG + chr3_4:40909935-40909954 Msa0500470:intron 25.0%
! TTATGTTGAACATCATGAAA+AGG - chr3_4:40910273-40910292 None:intergenic 25.0%
! TGAAAACATAACCAAAACAA+AGG - chr3_4:40910334-40910353 None:intergenic 25.0%
! CATGCTTAAGTTAAAATTTG+TGG + chr3_4:40910518-40910537 Msa0500470:intron 25.0%
! GTTGATGTAATTGAAAATTC+CGG + chr3_4:40910749-40910768 Msa0500470:CDS 25.0%
! TTCCTTCACTTAATAAAGTT+AGG + chr3_4:40910888-40910907 Msa0500470:CDS 25.0%
! GTCAAAAAATAAAATCTAGG+TGG - chr3_4:40911191-40911210 None:intergenic 25.0%
! ATATGATTTCTTCAAGGAAT+GGG + chr3_4:40911406-40911425 Msa0500470:intron 25.0%
!!! ACATGTTTTTTTGTTCTTGA+TGG + chr3_4:40911441-40911460 Msa0500470:intron 25.0%
!!! CATGTTTTTTTGTTCTTGAT+GGG + chr3_4:40911442-40911461 Msa0500470:intron 25.0%
! TCTTTGGACATTATAGTAAA+GGG - chr3_4:40911486-40911505 None:intergenic 25.0%
! ATCTTTGGACATTATAGTAA+AGG - chr3_4:40911487-40911506 None:intergenic 25.0%
! TACTGAACATAATTACGTAT+TGG + chr3_4:40911660-40911679 Msa0500470:CDS 25.0%
! TAAATAATAGTCGAACAACA+TGG - chr3_4:40911707-40911726 None:intergenic 25.0%
! TTCGACTATTATTTAGATGA+CGG + chr3_4:40911712-40911731 Msa0500470:CDS 25.0%
!!! GTTTTTAAAATGTGAAGTCA+AGG - chr3_4:40911986-40912005 None:intergenic 25.0%
!!! TGACTTCACATTTTAAAAAC+TGG + chr3_4:40911986-40912005 Msa0500470:three_prime_UTR 25.0%
! TAAGAATGAACCTATTACTA+GGG - chr3_4:40912114-40912133 None:intergenic 25.0%
! ATAAGAATGAACCTATTACT+AGG - chr3_4:40912115-40912134 None:intergenic 25.0%
!! TAAGCTGATTTTTGCTTCAA+AGG + chr3_4:40906417-40906436 Msa0500470:five_prime_UTR 30.0%
!! AAGCTGATTTTTGCTTCAAA+GGG + chr3_4:40906418-40906437 Msa0500470:five_prime_UTR 30.0%
! AGAAGAAAGAAAAGGGTTTT+AGG + chr3_4:40906443-40906462 Msa0500470:five_prime_UTR 30.0%
!!! TTTTTTGATGGAGAGGATAT+CGG - chr3_4:40906648-40906667 None:intergenic 30.0%
!!! AGGTTTAGCTTCTTTTTTGA+TGG - chr3_4:40906660-40906679 None:intergenic 30.0%
!!! AAATCGTTCCATTTTGATTG+AGG + chr3_4:40906829-40906848 Msa0500470:CDS 30.0%
TCCAAAGGATATAAAGGATT+CGG + chr3_4:40907033-40907052 Msa0500470:CDS 30.0%
! CATTTTATATAGGTCCTGTT+TGG + chr3_4:40907193-40907212 Msa0500470:intron 30.0%
! GCTTATCAACACAAATCTTT+TGG - chr3_4:40907565-40907584 None:intergenic 30.0%
AAGGATTGTAGGATAAATAC+AGG + chr3_4:40907602-40907621 Msa0500470:intron 30.0%
AGGATTGTAGGATAAATACA+GGG + chr3_4:40907603-40907622 Msa0500470:intron 30.0%
CATATCAAGTAACTTTGGAT+TGG - chr3_4:40907676-40907695 None:intergenic 30.0%
! ACAGCAAAAGAAAATCCTTT+TGG + chr3_4:40907975-40907994 Msa0500470:CDS 30.0%
TAAGAGACTTAAGATGTGAA+GGG - chr3_4:40908038-40908057 None:intergenic 30.0%
TTAAGAGACTTAAGATGTGA+AGG - chr3_4:40908039-40908058 None:intergenic 30.0%
!!! GTATTTTTTAACTGGTTCAC+CGG - chr3_4:40908428-40908447 None:intergenic 30.0%
! CTAAACCTATTTTCCATATG+TGG + chr3_4:40908577-40908596 Msa0500470:intron 30.0%
ACGATGAAGTAATTTGACAA+GGG - chr3_4:40908629-40908648 None:intergenic 30.0%
TAGTGTGACATCAAACATTT+GGG + chr3_4:40908733-40908752 Msa0500470:intron 30.0%
AACAAAAAGGAGGAATGAAA+AGG + chr3_4:40908951-40908970 Msa0500470:intron 30.0%
AGAAAGAAAGTGATGAAGAA+AGG + chr3_4:40909036-40909055 Msa0500470:intron 30.0%
AAACAAATGTATCACTCCAA+AGG + chr3_4:40909233-40909252 Msa0500470:intron 30.0%
! CAAAACAACAAGTTGAAGAA+AGG + chr3_4:40909316-40909335 Msa0500470:intron 30.0%
TTCTATGCAAGTACATTATG+TGG + chr3_4:40909369-40909388 Msa0500470:intron 30.0%
AATTTATTCCCCAATGATAC+AGG + chr3_4:40909812-40909831 Msa0500470:CDS 30.0%
ATTTATTCCCCAATGATACA+GGG + chr3_4:40909813-40909832 Msa0500470:CDS 30.0%
CACCATTCAAATGAAAGAAA+TGG - chr3_4:40909940-40909959 None:intergenic 30.0%
! GATCAACCTAAGATTTTCTA+TGG + chr3_4:40910308-40910327 Msa0500470:intron 30.0%
!! ATTTTCTATGGCCTTTGTTT+TGG + chr3_4:40910320-40910339 Msa0500470:intron 30.0%
CACTAAAATGATTCAGAACA+GGG - chr3_4:40910392-40910411 None:intergenic 30.0%
ACACTAAAATGATTCAGAAC+AGG - chr3_4:40910393-40910412 None:intergenic 30.0%
TGGATTTATTGCAAATGAAC+TGG - chr3_4:40910449-40910468 None:intergenic 30.0%
ACGATAAGCAAGATAAACTA+GGG - chr3_4:40910488-40910507 None:intergenic 30.0%
AACGATAAGCAAGATAAACT+AGG - chr3_4:40910489-40910508 None:intergenic 30.0%
AATCTCTTACAAAACTTGAG+TGG + chr3_4:40910573-40910592 Msa0500470:CDS 30.0%
GACCTAACTTTATTAAGTGA+AGG - chr3_4:40910893-40910912 None:intergenic 30.0%
CAAAAACTCAATGCAAAAAG+AGG - chr3_4:40911249-40911268 None:intergenic 30.0%
! CTTTTTGCATTGAGTTTTTG+TGG + chr3_4:40911249-40911268 Msa0500470:CDS 30.0%
TGTTACTCTGGTAAAATCAT+TGG + chr3_4:40911370-40911389 Msa0500470:intron 30.0%
CTTGTGATATGATTTCTTCA+AGG + chr3_4:40911400-40911419 Msa0500470:intron 30.0%
GATATGATTTCTTCAAGGAA+TGG + chr3_4:40911405-40911424 Msa0500470:intron 30.0%
CATTATAGTAAAGGGGAAAA+TGG - chr3_4:40911478-40911497 None:intergenic 30.0%
CTTTGGACATTATAGTAAAG+GGG - chr3_4:40911485-40911504 None:intergenic 30.0%
ACGTAATTATGTTCAGTAAC+AGG - chr3_4:40911658-40911677 None:intergenic 30.0%
TCGACTATTATTTAGATGAC+GGG + chr3_4:40911713-40911732 Msa0500470:CDS 30.0%
TGAAAAACAATACTAGTACC+AGG - chr3_4:40912165-40912184 None:intergenic 30.0%
TGTGTTATAAACCACAATCA+TGG - chr3_4:40912197-40912216 None:intergenic 30.0%
GCTACATCATTGAATTTAGT+CGG + chr3_4:40912227-40912246 Msa0500470:three_prime_UTR 30.0%
!! AGCTGATTTTTGCTTCAAAG+GGG + chr3_4:40906419-40906438 Msa0500470:five_prime_UTR 35.0%
AAAGGGGAAGAAGAAAGAAA+AGG + chr3_4:40906435-40906454 Msa0500470:five_prime_UTR 35.0%
AAGGGGAAGAAGAAAGAAAA+GGG + chr3_4:40906436-40906455 Msa0500470:five_prime_UTR 35.0%
GAACAAAACAACAGCGAAAA+TGG + chr3_4:40906475-40906494 Msa0500470:exon 35.0%
!! TTGTTCGTTTTGTTCTTCCA+TGG - chr3_4:40906531-40906550 None:intergenic 35.0%
! TTGGAATCTTCTGAGGAATT+GGG - chr3_4:40906560-40906579 None:intergenic 35.0%
! TTTGGAATCTTCTGAGGAAT+TGG - chr3_4:40906561-40906580 None:intergenic 35.0%
TTCCTCAGAAGATTCCAAAT+CGG + chr3_4:40906562-40906581 Msa0500470:CDS 35.0%
!!! CTGTTTTGAAGCAATTCGTA+GGG - chr3_4:40906599-40906618 None:intergenic 35.0%
!!! ACTGTTTTGAAGCAATTCGT+AGG - chr3_4:40906600-40906619 None:intergenic 35.0%
! ATCGGAGATGATTGATTCAA+TGG - chr3_4:40906630-40906649 None:intergenic 35.0%
!!! TAGCTTCTTTTTTGATGGAG+AGG - chr3_4:40906655-40906674 None:intergenic 35.0%
TGTGAAATTGGATAAACCCT+AGG - chr3_4:40906746-40906765 None:intergenic 35.0%
TACGTTGCAGCTTCATAATT+TGG + chr3_4:40906904-40906923 Msa0500470:CDS 35.0%
ACCGAATCCTTTATATCCTT+TGG - chr3_4:40907037-40907056 None:intergenic 35.0%
CTCATAATTTGATGCTCAAG+AGG + chr3_4:40907074-40907093 Msa0500470:CDS 35.0%
! TCAACACAAATCTTTTGGTG+AGG - chr3_4:40907560-40907579 None:intergenic 35.0%
TTGTGTTAGGAAAGGATTGT+AGG + chr3_4:40907591-40907610 Msa0500470:intron 35.0%
TTGTAGGATAAATACAGGGT+TGG + chr3_4:40907607-40907626 Msa0500470:intron 35.0%
!! ACTGAATGTGGTGTTATATC+AGG + chr3_4:40907748-40907767 Msa0500470:intron 35.0%
!! AATGTGGTGTTATATCAGGT+TGG + chr3_4:40907752-40907771 Msa0500470:intron 35.0%
TAAATCACATAAAGAGCTGG+TGG - chr3_4:40908144-40908163 None:intergenic 35.0%
GAGTAAATCACATAAAGAGC+TGG - chr3_4:40908147-40908166 None:intergenic 35.0%
TGTGATTTACTCACAGCTAT+TGG + chr3_4:40908155-40908174 Msa0500470:CDS 35.0%
TAACTTACCAGTGTCCTTAT+TGG - chr3_4:40908265-40908284 None:intergenic 35.0%
! AGGTTTAGAGATTTAAGGTC+TGG - chr3_4:40908565-40908584 None:intergenic 35.0%
CTTTCCCACATATGGAAAAT+AGG - chr3_4:40908585-40908604 None:intergenic 35.0%
CGATGAAGTAATTTGACAAG+GGG - chr3_4:40908628-40908647 None:intergenic 35.0%
GACGATGAAGTAATTTGACA+AGG - chr3_4:40908630-40908649 None:intergenic 35.0%
CTAGTGTGACATCAAACATT+TGG + chr3_4:40908732-40908751 Msa0500470:intron 35.0%
AGTGTGACATCAAACATTTG+GGG + chr3_4:40908734-40908753 Msa0500470:intron 35.0%
AGAAATATGCTTGTCCATGA+TGG - chr3_4:40908831-40908850 None:intergenic 35.0%
AGCATGAATAGGAAACTTCT+TGG + chr3_4:40908866-40908885 Msa0500470:intron 35.0%
!! TGATGGATTCAATTGCCATT+TGG + chr3_4:40908990-40909009 Msa0500470:intron 35.0%
TTGCAATCTTGCTAACCAAA+TGG - chr3_4:40909008-40909027 None:intergenic 35.0%
ATTTGGTTAGCAAGATTGCA+AGG + chr3_4:40909007-40909026 Msa0500470:intron 35.0%
!!! GTGATTTTTTTCTGCTTCAC+CGG + chr3_4:40909141-40909160 Msa0500470:intron 35.0%
GTTTATATAGGTGGCTTCTA+GGG - chr3_4:40909190-40909209 None:intergenic 35.0%
TGTTTATATAGGTGGCTTCT+AGG - chr3_4:40909191-40909210 None:intergenic 35.0%
AAAGATTGCATACAGAGTGA+AGG - chr3_4:40909351-40909370 None:intergenic 35.0%
GTGAACATCATCTTCCAATT+TGG - chr3_4:40909543-40909562 None:intergenic 35.0%
ATTGTATGTGTTGGAGTAGA+AGG + chr3_4:40909755-40909774 Msa0500470:CDS 35.0%
TTGCATAAGATGTCATTGTC+AGG - chr3_4:40909794-40909813 None:intergenic 35.0%
TTTGAGTGCTTTCATGTCAT+GGG + chr3_4:40909855-40909874 Msa0500470:intron 35.0%
ACTCTTTGTTCAAGATGCTA+TGG + chr3_4:40909974-40909993 Msa0500470:CDS 35.0%
AACTTCACGTCCTTTCAAAT+GGG + chr3_4:40910013-40910032 Msa0500470:CDS 35.0%
AGATACAACATCTTCACTCT+TGG - chr3_4:40910111-40910130 None:intergenic 35.0%
AAGAGTGAAGATGTTGTATC+TGG + chr3_4:40910110-40910129 Msa0500470:CDS 35.0%
GAACATCATGAAAAGGTCAT+TGG - chr3_4:40910266-40910285 None:intergenic 35.0%
CAAAGGCCATAGAAAATCTT+AGG - chr3_4:40910317-40910336 None:intergenic 35.0%
TAAAATGATTCAGAACAGGG+AGG - chr3_4:40910389-40910408 None:intergenic 35.0%
ATCTTGCTTATCGTTGTAGT+TGG + chr3_4:40910494-40910513 Msa0500470:intron 35.0%
TCTTGCTTATCGTTGTAGTT+GGG + chr3_4:40910495-40910514 Msa0500470:intron 35.0%
AATTTGTGGAATTCTTTGGC+TGG + chr3_4:40910532-40910551 Msa0500470:intron 35.0%
TCCTCTTTATCTATGATAGC+CGG - chr3_4:40910707-40910726 None:intergenic 35.0%
TTCCAACTTTACTTCCAAAG+AGG + chr3_4:40910816-40910835 Msa0500470:CDS 35.0%
TGATCAAACTTAGTCCTCTT+TGG - chr3_4:40910833-40910852 None:intergenic 35.0%
!! TGAAATTAAGCTAGCTTGCT+TGG - chr3_4:40910858-40910877 None:intergenic 35.0%
!!! ATCGCCTTTTTTGAAACTCA+GGG - chr3_4:40910915-40910934 None:intergenic 35.0%
!! TGATAGTTCTGATTTCTTGC+TGG + chr3_4:40910934-40910953 Msa0500470:CDS 35.0%
! TGGTTTTTCTGCTAAGAACA+AGG - chr3_4:40911078-40911097 None:intergenic 35.0%
AAATGTGAATCTAGAAGCCA+AGG + chr3_4:40911111-40911130 Msa0500470:CDS 35.0%
AAAGGGATGATTCTTTACCT+TGG - chr3_4:40911131-40911150 None:intergenic 35.0%
TTGACAGATCAAGATCAGTA+TGG + chr3_4:40911206-40911225 Msa0500470:intron 35.0%
TCAGTATGGAATATCCTCTA+AGG + chr3_4:40911220-40911239 Msa0500470:CDS 35.0%
AAACTCAATGCAAAAAGAGG+AGG - chr3_4:40911246-40911265 None:intergenic 35.0%
GAGTACCATATTGAGAATGA+TGG + chr3_4:40911285-40911304 Msa0500470:CDS 35.0%
CCAATCCATCATTCTCAATA+TGG - chr3_4:40911293-40911312 None:intergenic 35.0%
!! CCATATTGAGAATGATGGAT+TGG + chr3_4:40911290-40911309 Msa0500470:CDS 35.0%
!! TTGAGAATGATGGATTGGAA+TGG + chr3_4:40911295-40911314 Msa0500470:CDS 35.0%
AATGGTTCAAGATGTTACTC+TGG + chr3_4:40911358-40911377 Msa0500470:intron 35.0%
! TGTGATGATGCAGGTATATT+AGG - chr3_4:40911541-40911560 None:intergenic 35.0%
! CATTAATAGGTACTGTGAGT+TGG - chr3_4:40911588-40911607 None:intergenic 35.0%
AGTAAATTTCGTGTCTTTCC+AGG - chr3_4:40911854-40911873 None:intergenic 35.0%
ACACGAAATTTACTTCCAAC+TGG + chr3_4:40911860-40911879 Msa0500470:CDS 35.0%
TCAATGTCCTCACAGAATAT+CGG - chr3_4:40911939-40911958 None:intergenic 35.0%
GCTAGGAGGAATAAAAAAAG+TGG + chr3_4:40912042-40912061 Msa0500470:three_prime_UTR 35.0%
CACAAAAGATTCCATGATTG+TGG + chr3_4:40912183-40912202 Msa0500470:three_prime_UTR 35.0%
ACAACAGCGAAAATGGAAGA+CGG + chr3_4:40906482-40906501 Msa0500470:exon 40.0%
! ATCTTCTGAGGAATTGGGAA+AGG - chr3_4:40906555-40906574 None:intergenic 40.0%
!! ATCCGATTTGGAATCTTCTG+AGG - chr3_4:40906567-40906586 None:intergenic 40.0%
!!! TCGTTCCATTTTGATTGAGG+AGG + chr3_4:40906832-40906851 Msa0500470:CDS 40.0%
!!! CCATTTTGATTGAGGAGGAT+CGG + chr3_4:40906837-40906856 Msa0500470:CDS 40.0%
!!! CATTTTGATTGAGGAGGATC+GGG + chr3_4:40906838-40906857 Msa0500470:CDS 40.0%
TGCAACGTAGTAAAATCCAC+CGG - chr3_4:40906893-40906912 None:intergenic 40.0%
TCAGGCACAAGTTCAATATC+AGG - chr3_4:40906992-40907011 None:intergenic 40.0%
! TGCCTGAAGAAGAGTTTTTC+CGG + chr3_4:40907005-40907024 Msa0500470:CDS 40.0%
!! TTATATCCTTTGGAGCATCC+CGG - chr3_4:40907027-40907046 None:intergenic 40.0%
GGATGCTCCAAAGGATATAA+AGG + chr3_4:40907027-40907046 Msa0500470:CDS 40.0%
GCTCAATTTCGAGCTATATC+AGG + chr3_4:40907096-40907115 Msa0500470:CDS 40.0%
GAGCTGATGAAAACAGCTTA+TGG - chr3_4:40907403-40907422 None:intergenic 40.0%
GCTTGTTTGAGCTTATATGC+TGG - chr3_4:40907452-40907471 None:intergenic 40.0%
TTAAATACTATGGGCCTGCT+TGG - chr3_4:40907479-40907498 None:intergenic 40.0%
GATAAGCCTGCTATTGTGTT+AGG + chr3_4:40907578-40907597 Msa0500470:intron 40.0%
TCCTTTCCTAACACAATAGC+AGG - chr3_4:40907587-40907606 None:intergenic 40.0%
!! GGTGTTATATCAGGTTGGTT+TGG + chr3_4:40907757-40907776 Msa0500470:intron 40.0%
!! TGGTTTGGCTTTAAGTATGC+TGG + chr3_4:40907772-40907791 Msa0500470:intron 40.0%
CTGCAAACATCATGCAAAAC+TGG + chr3_4:40907951-40907970 Msa0500470:CDS 40.0%
GGTTTGCAATAGTCTCCAAA+AGG - chr3_4:40907993-40908012 None:intergenic 40.0%
GACTTGTCAGGAACTTCTTT+CGG - chr3_4:40908014-40908033 None:intergenic 40.0%
!!! ATTCCTAGCTGGTTTTGTAC+AGG - chr3_4:40908075-40908094 None:intergenic 40.0%
TTGTATGCGTAATTCCTAGC+TGG - chr3_4:40908086-40908105 None:intergenic 40.0%
CAGATCAATAGGTTCTGCAA+AGG - chr3_4:40908193-40908212 None:intergenic 40.0%
CTTTGCAGAACCTATTGATC+TGG + chr3_4:40908191-40908210 Msa0500470:CDS 40.0%
CCTACAATCTCCAGATCAAT+AGG - chr3_4:40908204-40908223 None:intergenic 40.0%
CCTATTGATCTGGAGATTGT+AGG + chr3_4:40908201-40908220 Msa0500470:CDS 40.0%
CAAAAGCTTGAGCATCTTTC+AGG - chr3_4:40908230-40908249 None:intergenic 40.0%
!! AAATGGTGGATTCTAAGCTG+AGG + chr3_4:40908384-40908403 Msa0500470:intron 40.0%
!! AATGGTGGATTCTAAGCTGA+GGG + chr3_4:40908385-40908404 Msa0500470:intron 40.0%
TGTGGGAGTAAGATTATGTG+TGG - chr3_4:40908509-40908528 None:intergenic 40.0%
ATCACGCATATGAGAGATGT+GGG - chr3_4:40908526-40908545 None:intergenic 40.0%
AATCACGCATATGAGAGATG+TGG - chr3_4:40908527-40908546 None:intergenic 40.0%
ATATGCGTGATTGTGTTCGT+AGG + chr3_4:40908535-40908554 Msa0500470:intron 40.0%
! TTCACGGCATTTTCTTCATG+TGG + chr3_4:40908697-40908716 Msa0500470:intron 40.0%
! TCACGGCATTTTCTTCATGT+GGG + chr3_4:40908698-40908717 Msa0500470:intron 40.0%
AAGTCTCTCTCTTTCCATCA+TGG + chr3_4:40908814-40908833 Msa0500470:intron 40.0%
TGGACAAGCATATTTCTTCC+CGG + chr3_4:40908834-40908853 Msa0500470:intron 40.0%
TATTCATGCTTCTCCTCTAC+CGG - chr3_4:40908856-40908875 None:intergenic 40.0%
GAAAGTGATGAAGAAAGGAG+AGG + chr3_4:40909041-40909060 Msa0500470:intron 40.0%
AAGGAGAGGCAGAATTATTG+TGG + chr3_4:40909055-40909074 Msa0500470:intron 40.0%
AGGAGAGGCAGAATTATTGT+GGG + chr3_4:40909056-40909075 Msa0500470:intron 40.0%
!! AGACCATTGGTTCAATCTGA+CGG + chr3_4:40909119-40909138 Msa0500470:intron 40.0%
TTCAAGAGCTAACAATGTCC+TGG - chr3_4:40909269-40909288 None:intergenic 40.0%
TGTCATGGATAGCTCCAAAT+TGG + chr3_4:40909526-40909545 Msa0500470:CDS 40.0%
GTTCACGATGATGAAGAAGA+TGG + chr3_4:40909557-40909576 Msa0500470:CDS 40.0%
ATGGTCAGAGACGTAGAAAA+AGG + chr3_4:40909576-40909595 Msa0500470:CDS 40.0%
! GACTTTTGAATATACCCCCT+TGG - chr3_4:40909634-40909653 None:intergenic 40.0%
GGAGTAGAAGGATCTAATGA+TGG + chr3_4:40909767-40909786 Msa0500470:CDS 40.0%
GTTTGAGTGCTTTCATGTCA+TGG + chr3_4:40909854-40909873 Msa0500470:intron 40.0%
GAACTTCACGTCCTTTCAAA+TGG + chr3_4:40910012-40910031 Msa0500470:CDS 40.0%
! AGGAATTGATTTCTTGCCTG+AGG + chr3_4:40910049-40910068 Msa0500470:CDS 40.0%
AGGGACTCTTGGAGATATAA+TGG - chr3_4:40910469-40910488 None:intergenic 40.0%
CAAGATAAACTAGGGACTCT+TGG - chr3_4:40910480-40910499 None:intergenic 40.0%
!! AATTCTTTGGCTGGCTTACA+GGG + chr3_4:40910541-40910560 Msa0500470:intron 40.0%
! ACACTTTTGCAGGACAAAAG+AGG - chr3_4:40910599-40910618 None:intergenic 40.0%
TCCGGCTATCATAGATAAAG+AGG + chr3_4:40910703-40910722 Msa0500470:CDS 40.0%
! AGATAAAGAGGAGCATGTTC+AGG + chr3_4:40910715-40910734 Msa0500470:CDS 40.0%
!! GAAAATTCCGGTGTCACAAA+AGG + chr3_4:40910761-40910780 Msa0500470:CDS 40.0%
AGGAGAACTGGATAGTATGA+CGG + chr3_4:40910781-40910800 Msa0500470:CDS 40.0%
! GTCCTCTTTGGAAGTAAAGT+TGG - chr3_4:40910821-40910840 None:intergenic 40.0%
AGGTCCCTGAGTTTCAAAAA+AGG + chr3_4:40910908-40910927 Msa0500470:CDS 40.0%
!!! CATCGCCTTTTTTGAAACTC+AGG - chr3_4:40910916-40910935 None:intergenic 40.0%
CACATTTCTTTCATCTGCGT+TGG - chr3_4:40911098-40911117 None:intergenic 40.0%
! AGTTTTTGTGGTAGACCTTC+TGG + chr3_4:40911261-40911280 Msa0500470:CDS 40.0%
! GTTTTTGTGGTAGACCTTCT+GGG + chr3_4:40911262-40911281 Msa0500470:CDS 40.0%
! TTTTTGTGGTAGACCTTCTG+GGG + chr3_4:40911263-40911282 Msa0500470:CDS 40.0%
TGAACTTCGTGCAATAGAAG+CGG + chr3_4:40911323-40911342 Msa0500470:CDS 40.0%
! TTTTGTTCTTGATGGGAGTC+TGG + chr3_4:40911449-40911468 Msa0500470:intron 40.0%
! AGCAACATTTGTGATGATGC+AGG - chr3_4:40911550-40911569 None:intergenic 40.0%
! ACTGTGAGTTGGAGAAATCA+AGG - chr3_4:40911577-40911596 None:intergenic 40.0%
!! ATGACGGGTTATCATCTGAA+AGG + chr3_4:40911728-40911747 Msa0500470:CDS 40.0%
AAGGACAAATTGCACTACCT+TGG + chr3_4:40911747-40911766 Msa0500470:CDS 40.0%
! TTCTTGGGCAGATCTTTTAG+AGG + chr3_4:40911805-40911824 Msa0500470:CDS 40.0%
CTCACAGAATATCGGTATTG+TGG - chr3_4:40911931-40911950 None:intergenic 40.0%
CACAATACCGATATTCTGTG+AGG + chr3_4:40911929-40911948 Msa0500470:three_prime_UTR 40.0%
TGAAGTCAAGGAATGATGAC+GGG - chr3_4:40911974-40911993 None:intergenic 40.0%
GTGAAGTCAAGGAATGATGA+CGG - chr3_4:40911975-40911994 None:intergenic 40.0%
TCTGAGAAATTGCAGTTGCA+CGG + chr3_4:40912009-40912028 Msa0500470:three_prime_UTR 40.0%
TGCACGGATTTAAGTATGCT+AGG + chr3_4:40912025-40912044 Msa0500470:three_prime_UTR 40.0%
ACGGATTTAAGTATGCTAGG+AGG + chr3_4:40912028-40912047 Msa0500470:three_prime_UTR 40.0%
! CAACAGTTTTCATCACGGTA+GGG - chr3_4:40912080-40912099 None:intergenic 40.0%
! TCAACAGTTTTCATCACGGT+AGG - chr3_4:40912081-40912100 None:intergenic 40.0%
! CAGCTCAACAGTTTTCATCA+CGG - chr3_4:40912085-40912104 None:intergenic 40.0%
TTACTTCAATACGGCTTTCC+TGG + chr3_4:40912144-40912163 Msa0500470:three_prime_UTR 40.0%
TGAATTTAGTCGGACAGCTA+TGG + chr3_4:40912237-40912256 Msa0500470:three_prime_UTR 40.0%
AGCTATGGTAGGATGTAATG+TGG + chr3_4:40912252-40912271 Msa0500470:three_prime_UTR 40.0%
GAAGACGGTGAGATAGAAGA+AGG + chr3_4:40906497-40906516 Msa0500470:CDS 45.0%
AGAAGAAGGTTCAATCGCCA+TGG + chr3_4:40906511-40906530 Msa0500470:CDS 45.0%
GGGTGATTCTTCATCCGATT+TGG - chr3_4:40906579-40906598 None:intergenic 45.0%
AGATCGCGAAGGAGTTGTTT+AGG - chr3_4:40906680-40906699 None:intergenic 45.0%
TTTGAGTAACGAGATCGCGA+AGG - chr3_4:40906691-40906710 None:intergenic 45.0%
GACGAAGAGTGATGAAGTGA+AGG - chr3_4:40906718-40906737 None:intergenic 45.0%
TCACTTCATCACTCTTCGTC+AGG + chr3_4:40906718-40906737 Msa0500470:CDS 45.0%
CCGATCCTCCTCAATCAAAA+TGG - chr3_4:40906840-40906859 None:intergenic 45.0%
GGATCGGGTTAAAATGCAGA+CGG + chr3_4:40906853-40906872 Msa0500470:CDS 45.0%
! GCCTGAAGAAGAGTTTTTCC+GGG + chr3_4:40907006-40907025 Msa0500470:CDS 45.0%
TCCCGGAAAAACTCTTCTTC+AGG - chr3_4:40907010-40907029 None:intergenic 45.0%
TCAAACAAGCCAATCCAAGC+AGG + chr3_4:40907462-40907481 Msa0500470:intron 45.0%
GCCTGCTATTGTGTTAGGAA+AGG + chr3_4:40907583-40907602 Msa0500470:intron 45.0%
CCACATTCAGTTTGATCGAC+AGG - chr3_4:40907739-40907758 None:intergenic 45.0%
CCTGTCGATCAAACTGAATG+TGG + chr3_4:40907736-40907755 Msa0500470:intron 45.0%
!!! TAGCTGGTTTTGTACAGGCA+AGG - chr3_4:40908070-40908089 None:intergenic 45.0%
TTGCCTGTACAAAACCAGCT+AGG + chr3_4:40908069-40908088 Msa0500470:CDS 45.0%
!! ACAGCTATTGGCTCAGAAAG+AGG + chr3_4:40908167-40908186 Msa0500470:CDS 45.0%
AGTCAAGCCAATAAGGACAC+TGG + chr3_4:40908255-40908274 Msa0500470:CDS 45.0%
GTCAGAATATACACTGCCAG+CGG - chr3_4:40908346-40908365 None:intergenic 45.0%
GGCAGTGTATATTCTGACAC+CGG + chr3_4:40908348-40908367 Msa0500470:intron 45.0%
GAAGACGACTTTCCCACATA+TGG - chr3_4:40908593-40908612 None:intergenic 45.0%
! CACGGCATTTTCTTCATGTG+GGG + chr3_4:40908699-40908718 Msa0500470:intron 45.0%
TTCTTCATGTGGGGAACACT+AGG + chr3_4:40908708-40908727 Msa0500470:intron 45.0%
AGCATATTTCTTCCCGGTAG+AGG + chr3_4:40908840-40908859 Msa0500470:intron 45.0%
ATTCATGCTTCTCCTCTACC+GGG - chr3_4:40908855-40908874 None:intergenic 45.0%
! GGTAGAGGAGAAGCATGAAT+AGG + chr3_4:40908855-40908874 Msa0500470:intron 45.0%
TCACCGTCAGATTGAACCAA+TGG - chr3_4:40909125-40909144 None:intergenic 45.0%
! TTTTTCTGCTTCACCGGTGA+TGG + chr3_4:40909147-40909166 Msa0500470:intron 45.0%
GGCTCTATTAAGTCCATCAC+CGG - chr3_4:40909163-40909182 None:intergenic 45.0%
!! TCCAAAGGTATTATCCAGCC+AGG + chr3_4:40909248-40909267 Msa0500470:intron 45.0%
TCCTGGCTGGATAATACCTT+TGG - chr3_4:40909252-40909271 None:intergenic 45.0%
! TTTGGAGCTATCCATGACAG+TGG - chr3_4:40909525-40909544 None:intergenic 45.0%
AGAGACGTAGAAAAAGGCCA+AGG + chr3_4:40909582-40909601 Msa0500470:CDS 45.0%
ACGTAGAAAAAGGCCAAGGA+GGG + chr3_4:40909586-40909605 Msa0500470:CDS 45.0%
TGAATATACCCCCTTGGTCA+GGG - chr3_4:40909628-40909647 None:intergenic 45.0%
TTGAATATACCCCCTTGGTC+AGG - chr3_4:40909629-40909648 None:intergenic 45.0%
GTAATGAGTTTCGCAGGCTT+AGG - chr3_4:40909704-40909723 None:intergenic 45.0%
CTTAGCGTAATGAGTTTCGC+AGG - chr3_4:40909710-40909729 None:intergenic 45.0%
CTGCGAAACTCATTACGCTA+AGG + chr3_4:40909708-40909727 Msa0500470:CDS 45.0%
TACGCTAAGGTTTGAGTACG+TGG + chr3_4:40909721-40909740 Msa0500470:CDS 45.0%
!! GACATGAAAGCACTCAAACC+TGG - chr3_4:40909853-40909872 None:intergenic 45.0%
GCAAGAAATCAATTCCTGCC+AGG - chr3_4:40910046-40910065 None:intergenic 45.0%
CTGTCTGTACTCGATTCTGT+TGG - chr3_4:40910151-40910170 None:intergenic 45.0%
TTCTGCAGAGAATTCGCTCA+AGG + chr3_4:40910171-40910190 Msa0500470:CDS 45.0%
CTCAAGGAGAAAAGCTCAGT+TGG + chr3_4:40910187-40910206 Msa0500470:CDS 45.0%
!! GAATTCTTTGGCTGGCTTAC+AGG + chr3_4:40910540-40910559 Msa0500470:intron 45.0%
!! TGTCCTGCAAAAGTGTTCCA+TGG + chr3_4:40910603-40910622 Msa0500470:CDS 45.0%
!! GTCCTGCAAAAGTGTTCCAT+GGG + chr3_4:40910604-40910623 Msa0500470:CDS 45.0%
ACTCCCTTGTGCAAATTGGA+TGG + chr3_4:40910635-40910654 Msa0500470:CDS 45.0%
CAGCCATCCAATTTGCACAA+GGG - chr3_4:40910641-40910660 None:intergenic 45.0%
AACTTCACTAGGCACAGGTA+GGG - chr3_4:40910678-40910697 None:intergenic 45.0%
AAACTTCACTAGGCACAGGT+AGG - chr3_4:40910679-40910698 None:intergenic 45.0%
GGAGCATGTTCAGGAATCAA+TGG + chr3_4:40910724-40910743 Msa0500470:CDS 45.0%
! CAGTTCTCCTTTTGTGACAC+CGG - chr3_4:40910771-40910790 None:intergenic 45.0%
! CTGGATAGTATGACGGAAGA+TGG + chr3_4:40910788-40910807 Msa0500470:CDS 45.0%
CATCCACGAAAGAGACTTTG+TGG - chr3_4:40911032-40911051 None:intergenic 45.0%
CACAAAGTCTCTTTCGTGGA+TGG + chr3_4:40911030-40911049 Msa0500470:CDS 45.0%
! TCTCTTTCGTGGATGGATTC+TGG + chr3_4:40911037-40911056 Msa0500470:CDS 45.0%
TCAATATGGTACTCCCCAGA+AGG - chr3_4:40911279-40911298 None:intergenic 45.0%
AAGCGGAGGTAAGTACACAA+TGG + chr3_4:40911340-40911359 Msa0500470:intron 45.0%
! TGCACTACCTTGGTTGATGT+TGG + chr3_4:40911757-40911776 Msa0500470:CDS 45.0%
GCATAAGCCAACATCAACCA+AGG - chr3_4:40911767-40911786 None:intergenic 45.0%
TTATGCAAGCCTGTTAGTGG+TGG + chr3_4:40911781-40911800 Msa0500470:CDS 45.0%
TATGCAAGCCTGTTAGTGGT+GGG + chr3_4:40911782-40911801 Msa0500470:CDS 45.0%
!! TGGGCAGATCTTTTAGAGGA+AGG + chr3_4:40911809-40911828 Msa0500470:CDS 45.0%
!! GGGCAGATCTTTTAGAGGAA+GGG + chr3_4:40911810-40911829 Msa0500470:CDS 45.0%
!! CTTTTAGAGGAAGGGATCAC+CGG + chr3_4:40911818-40911837 Msa0500470:CDS 45.0%
TTCCTGGCTAGATCTTTCAG+AGG + chr3_4:40911899-40911918 Msa0500470:three_prime_UTR 45.0%
! TTCCTCTGAAAGATCTAGCC+AGG - chr3_4:40911904-40911923 None:intergenic 45.0%
TTTAGTCGGACAGCTATGGT+AGG + chr3_4:40912241-40912260 Msa0500470:three_prime_UTR 45.0%
TCACTCTTCGTCAGGTACCT+AGG + chr3_4:40906726-40906745 Msa0500470:intron 50.0%
CACTCTTCGTCAGGTACCTA+GGG + chr3_4:40906727-40906746 Msa0500470:intron 50.0%
! GTTTTTCCGGGATGCTCCAA+AGG + chr3_4:40907018-40907037 Msa0500470:CDS 50.0%
TACTATGGGCCTGCTTGGAT+TGG - chr3_4:40907474-40907493 None:intergenic 50.0%
GATGTGAAGGGAGACTTGTC+AGG - chr3_4:40908026-40908045 None:intergenic 50.0%
TGCTCGCAGTCAAGCCAATA+AGG + chr3_4:40908248-40908267 Msa0500470:CDS 50.0%
GTTACCAGTTCTATTGCCGC+TGG + chr3_4:40908327-40908346 Msa0500470:intron 50.0%
GGCTCTATTAAATCCCTCGC+CGG + chr3_4:40908406-40908425 Msa0500470:intron 50.0%
! TTTAACTGGTTCACCGGCGA+GGG - chr3_4:40908422-40908441 None:intergenic 50.0%
!! TTTTAACTGGTTCACCGGCG+AGG - chr3_4:40908423-40908442 None:intergenic 50.0%
!! ATAGGTGGCTTCTAGGGTGA+GGG - chr3_4:40909184-40909203 None:intergenic 50.0%
!! TATAGGTGGCTTCTAGGGTG+AGG - chr3_4:40909185-40909204 None:intergenic 50.0%
AGAGCTAACAATGTCCTGGC+TGG - chr3_4:40909265-40909284 None:intergenic 50.0%
CTCAGGCATTTCCACTGTCA+TGG + chr3_4:40909511-40909530 Msa0500470:intron 50.0%
GACGTAGAAAAAGGCCAAGG+AGG + chr3_4:40909585-40909604 Msa0500470:CDS 50.0%
TCCTTGACTTCTACCCTCCT+TGG - chr3_4:40909602-40909621 None:intergenic 50.0%
AGCTCGAGCCCTGTATCATT+GGG - chr3_4:40909824-40909843 None:intergenic 50.0%
AAGCTCGAGCCCTGTATCAT+TGG - chr3_4:40909825-40909844 None:intergenic 50.0%
!! GAAAGCACTCAAACCTGGTG+TGG - chr3_4:40909848-40909867 None:intergenic 50.0%
!! AGGTGCTGAGCCCATTTGAA+AGG - chr3_4:40910026-40910045 None:intergenic 50.0%
! TTTCAAATGGGCTCAGCACC+TGG + chr3_4:40910025-40910044 Msa0500470:CDS 50.0%
GCTGCTTCACTGTTATCAGC+GGG - chr3_4:40910089-40910108 None:intergenic 50.0%
GGCTGCTTCACTGTTATCAG+CGG - chr3_4:40910090-40910109 None:intergenic 50.0%
! GTTGGCTCTTCTGTGAGTCA+CGG + chr3_4:40910205-40910224 Msa0500470:intron 50.0%
! AGCCCATGGAACACTTTTGC+AGG - chr3_4:40910609-40910628 None:intergenic 50.0%
GCACACTCCCTTGTGCAAAT+TGG + chr3_4:40910631-40910650 Msa0500470:CDS 50.0%
CCAGCCATCCAATTTGCACA+AGG - chr3_4:40910642-40910661 None:intergenic 50.0%
CCTTGTGCAAATTGGATGGC+TGG + chr3_4:40910639-40910658 Msa0500470:CDS 50.0%
GACGAAACTTCACTAGGCAC+AGG - chr3_4:40910683-40910702 None:intergenic 50.0%
GCCTAGTGAAGTTTCGTCTC+CGG + chr3_4:40910685-40910704 Msa0500470:CDS 50.0%
!! CGGTGTCACAAAAGGAGAAC+TGG + chr3_4:40910769-40910788 Msa0500470:CDS 50.0%
GTGCCACAAAGTCTCTTTCG+TGG + chr3_4:40911026-40911045 Msa0500470:CDS 50.0%
! GTGGATGGATTCTGGTGTGA+AGG + chr3_4:40911045-40911064 Msa0500470:CDS 50.0%
GCAAAAAGAGGAGGCCTTAG+AGG - chr3_4:40911237-40911256 None:intergenic 50.0%
ACTTCGTGCAATAGAAGCGG+AGG + chr3_4:40911326-40911345 Msa0500470:CDS 50.0%
GGCTTATGCAAGCCTGTTAG+TGG + chr3_4:40911778-40911797 Msa0500470:CDS 50.0%
!! CCTGTTAGTGGTGGGTTCTT+GGG + chr3_4:40911790-40911809 Msa0500470:CDS 50.0%
CTTTCCAGGAGATCGTCTTC+CGG - chr3_4:40911840-40911859 None:intergenic 50.0%
CCAGGAACCTACCACTACTT+GGG - chr3_4:40911886-40911905 None:intergenic 50.0%
AGTAAAATCCACCGGCGCCT+TGG - chr3_4:40906885-40906904 None:intergenic 55.0%
ACTGCCAGCGGCAATAGAAC+TGG - chr3_4:40908334-40908353 None:intergenic 55.0%
GCCAAGGAGGGTAGAAGTCA+AGG + chr3_4:40909598-40909617 Msa0500470:CDS 55.0%
TCAAGGAGAGCCCTGACCAA+GGG + chr3_4:40909615-40909634 Msa0500470:CDS 55.0%
GCTCGAGCCCTGTATCATTG+GGG - chr3_4:40909823-40909842 None:intergenic 55.0%
CTGTTATCAGCGGGAAGCAG+TGG - chr3_4:40910080-40910099 None:intergenic 55.0%
! AAGGGAGTGTGCAAAGCCCA+TGG - chr3_4:40910623-40910642 None:intergenic 55.0%
GGCACAGGTAGGGCTCTTAT+AGG - chr3_4:40910668-40910687 None:intergenic 55.0%
GCCGGAGACGAAACTTCACT+AGG - chr3_4:40910689-40910708 None:intergenic 55.0%
!! GCCTGTTAGTGGTGGGTTCT+TGG + chr3_4:40911789-40911808 Msa0500470:CDS 55.0%
CCCAAGAACCCACCACTAAC+AGG - chr3_4:40911793-40911812 None:intergenic 55.0%
ATCACCGGAAGACGATCTCC+TGG + chr3_4:40911833-40911852 Msa0500470:CDS 55.0%
CTTCCAACTGGCCCAAGTAG+TGG + chr3_4:40911872-40911891 Msa0500470:CDS 55.0%
CTACCACTACTTGGGCCAGT+TGG - chr3_4:40911878-40911897 None:intergenic 55.0%
CAACTGGCCCAAGTAGTGGT+AGG + chr3_4:40911876-40911895 Msa0500470:exon 55.0%
CCCAAGTAGTGGTAGGTTCC+TGG + chr3_4:40911883-40911902 Msa0500470:exon 55.0%
GCCAGGAACCTACCACTACT+TGG - chr3_4:40911887-40911906 None:intergenic 55.0%
GCTGCAGCGACCCTAGTAAT+AGG + chr3_4:40912101-40912120 Msa0500470:three_prime_UTR 55.0%
AATGCAGACGGAACGCGCCA+AGG + chr3_4:40906865-40906884 Msa0500470:CDS 60.0%
GTCAAGGAGAGCCCTGACCA+AGG + chr3_4:40909614-40909633 Msa0500470:CDS 60.0%
CAAGGAGAGCCCTGACCAAG+GGG + chr3_4:40909616-40909635 Msa0500470:CDS 60.0%
AAGGAGAGCCCTGACCAAGG+GGG + chr3_4:40909617-40909636 Msa0500470:CDS 60.0%
! AAATGGGCTCAGCACCTGGC+AGG + chr3_4:40910029-40910048 Msa0500470:CDS 60.0%
GGAAGCAGTGGAGACACCTC+AGG - chr3_4:40910068-40910087 None:intergenic 60.0%
AGGGCTCGAGCTTCCACACC+AGG + chr3_4:40909832-40909851 Msa0500470:CDS 65.0%
GACGGAACGCGCCAAGGCGC+CGG + chr3_4:40906871-40906890 Msa0500470:CDS 75.0%
!!! GGAACGCGCCAAGGCGCCGG+TGG + chr3_4:40906874-40906893 Msa0500470:CDS 80.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 40906396 40912326 40906396 ID=Msa0500470;Name=Msa0500470
chr3_4 mRNA 40906396 40912326 40906396 ID=Msa0500470-mRNA-1;Parent=Msa0500470;Name=Msa0500470-mRNA-1;_AED=0.09;_eAED=0.09;_QI=98|1|1|1|1|1|8|435|810
chr3_4 exon 40906396 40906739 40906396 ID=Msa0500470-mRNA-1:exon:8384;Parent=Msa0500470-mRNA-1
chr3_4 exon 40906827 40907117 40906827 ID=Msa0500470-mRNA-1:exon:8385;Parent=Msa0500470-mRNA-1
chr3_4 exon 40907940 40908276 40907940 ID=Msa0500470-mRNA-1:exon:8386;Parent=Msa0500470-mRNA-1
chr3_4 exon 40909516 40909853 40909516 ID=Msa0500470-mRNA-1:exon:8387;Parent=Msa0500470-mRNA-1
chr3_4 exon 40909966 40910216 40909966 ID=Msa0500470-mRNA-1:exon:8388;Parent=Msa0500470-mRNA-1
chr3_4 exon 40910562 40911132 40910562 ID=Msa0500470-mRNA-1:exon:8389;Parent=Msa0500470-mRNA-1
chr3_4 exon 40911213 40911347 40911213 ID=Msa0500470-mRNA-1:exon:8390;Parent=Msa0500470-mRNA-1
chr3_4 exon 40911628 40912326 40911628 ID=Msa0500470-mRNA-1:exon:8391;Parent=Msa0500470-mRNA-1
chr3_4 five_prime_UTR 40906396 40906493 40906396 ID=Msa0500470-mRNA-1:five_prime_utr;Parent=Msa0500470-mRNA-1
chr3_4 CDS 40906494 40906739 40906494 ID=Msa0500470-mRNA-1:cds;Parent=Msa0500470-mRNA-1
chr3_4 CDS 40906827 40907117 40906827 ID=Msa0500470-mRNA-1:cds;Parent=Msa0500470-mRNA-1
chr3_4 CDS 40907940 40908276 40907940 ID=Msa0500470-mRNA-1:cds;Parent=Msa0500470-mRNA-1
chr3_4 CDS 40909516 40909853 40909516 ID=Msa0500470-mRNA-1:cds;Parent=Msa0500470-mRNA-1
chr3_4 CDS 40909966 40910216 40909966 ID=Msa0500470-mRNA-1:cds;Parent=Msa0500470-mRNA-1
chr3_4 CDS 40910562 40911132 40910562 ID=Msa0500470-mRNA-1:cds;Parent=Msa0500470-mRNA-1
chr3_4 CDS 40911213 40911347 40911213 ID=Msa0500470-mRNA-1:cds;Parent=Msa0500470-mRNA-1
chr3_4 CDS 40911628 40911891 40911628 ID=Msa0500470-mRNA-1:cds;Parent=Msa0500470-mRNA-1
chr3_4 three_prime_UTR 40911892 40912326 40911892 ID=Msa0500470-mRNA-1:three_prime_utr;Parent=Msa0500470-mRNA-1
Gene Sequence

>Msa0500470

ATGGAAGACGGTGAGATAGAAGAAGGTTCAATCGCCATGGAAGAACAAAACGAACAAGCCTTTCCCAATTCCTCAGAAGATTCCAAATCGGATGAAGAATCACCCTACGAATTGCTTCAAAACAGTAAATCTTCCATTGAATCAATCATCTCCGATATCCTCTCCATCAAAAAAGAAGCTAAACCTAAACAACTCCTTCGCGATCTCGTTACTCAAATGTTCCTTCACTTCATCACTCTTCGTCAGGCAAATCGTTCCATTTTGATTGAGGAGGATCGGGTTAAAATGCAGACGGAACGCGCCAAGGCGCCGGTGGATTTTACTACGTTGCAGCTTCATAATTTGGTGTATGAGAAGAGTCATTATCTTAAAGCTATTAAGGCTTGTAAAGATTTTAAATCGAAGTATCCTGATATTGAACTTGTGCCTGAAGAAGAGTTTTTCCGGGATGCTCCAAAGGATATAAAGGATTCGGTTTTGTCTAAAGATAGTGCTCATAATTTGATGCTCAAGAGGCTCAATTTCGAGCTATATCAGCGTAAAGAGCTCTGCAAACATCATGCAAAACTGGAACAGCAAAAGAAAATCCTTTTGGAGACTATTGCAAACCGAAAGAAGTTCCTGACAAGTCTCCCTTCACATCTTAAGTCTCTTAAGAAAGCATCCTTGCCTGTACAAAACCAGCTAGGAATTACGCATACAAAGAAACTAAAGCAGCATCATTCAGCAGAGTTGCTTCCACCAGCTCTTTATGTGATTTACTCACAGCTATTGGCTCAGAAAGAGGCCTTTGCAGAACCTATTGATCTGGAGATTGTAGGAAGCCTGAAAGATGCTCAAGCTTTTGCTCGCAGTCAAGCCAATAAGGACACTGGCATTTCCACTGTCATGGATAGCTCCAAATTGGAAGATGATGTTCACGATGATGAAGAAGATGGTCAGAGACGTAGAAAAAGGCCAAGGAGGGTAGAAGTCAAGGAGAGCCCTGACCAAGGGGGTATATTCAAAAGTCACCCACTTAAAATCATTATCAATGTGTATGAAGATGAGTCTTCTGATCCTAAGCCTGCGAAACTCATTACGCTAAGGTTTGAGTACGTGGTGAAGTTGAATATTGTATGTGTTGGAGTAGAAGGATCTAATGATGGTCCTGACAATGACATCTTATGCAATTTATTCCCCAATGATACAGGGCTCGAGCTTCCACACCAGTCAGCTAAACTCTTTGTTCAAGATGCTATGGCGTTCAATACTCAGAGAACTTCACGTCCTTTCAAATGGGCTCAGCACCTGGCAGGAATTGATTTCTTGCCTGAGGTGTCTCCACTGCTTCCCGCTGATAACAGTGAAGCAGCCAAGAGTGAAGATGTTGTATCTGGTCTCACATTATATCGCCAACAGAATCGAGTACAGACAGTTCTGCAGAGAATTCGCTCAAGGAGAAAAGCTCAGTTGGCTCTTCTGGAACAGCTAGAATCTCTTACAAAACTTGAGTGGCCTCTTTTGTCCTGCAAAAGTGTTCCATGGGCTTTGCACACTCCCTTGTGCAAATTGGATGGCTGGTCACCTATAAGAGCCCTACCTGTGCCTAGTGAAGTTTCGTCTCCGGCTATCATAGATAAAGAGGAGCATGTTCAGGAATCAATGGATGTTGATGTAATTGAAAATTCCGGTGTCACAAAAGGAGAACTGGATAGTATGACGGAAGATGGCGAGCTTCCAACTTTACTTCCAAAGAGGACTAAGTTTGATCATTCCAAGCAAGCTAGCTTAATTTCAAAAAGCATCATTCCTTCACTTAATAAAGTTAGGTCCCTGAGTTTCAAAAAAGGCGATGATAGTTCTGATTTCTTGCTGGATACTGATAGTGATTTTGATGATACTGCACAAATAGAAAGTGAACATGAACATAGCGTATCTGATTACTGTGCCACAAAGTCTCTTTCGTGGATGGATTCTGGTGTGAAGGAATTTTTCCTTGTTCTTAGCAGAAAAACCAACGCAGATGAAAGAAATGTGAATCTAGAAGCCAAGATCAAGATCAGTATGGAATATCCTCTAAGGCCTCCTCTTTTTGCATTGAGTTTTTGTGGTAGACCTTCTGGGGAGTACCATATTGAGAATGATGGATTGGAATGGTACAATGAACTTCGTGCAATAGAAGCGGAGGTCAATTTACACATGCTAAAGACACTACCTGTTACTGAACATAATTACGTATTGGCTCATCAAGTGAGTTGTCTTGCCATGTTGTTCGACTATTATTTAGATGACGGGTTATCATCTGAAAGGACAAATTGCACTACCTTGGTTGATGTTGGCTTATGCAAGCCTGTTAGTGGTGGGTTCTTGGGCAGATCTTTTAGAGGAAGGGATCACCGGAAGACGATCTCCTGGAAAGACACGAAATTTACTTCCAACTGGCCCAAGTAG
Protein sequence

>Msa0500470

MEDGEIEEGSIAMEEQNEQAFPNSSEDSKSDEESPYELLQNSKSSIESIISDILSIKKEAKPKQLLRDLVTQMFLHFITLRQANRSILIEEDRVKMQTERAKAPVDFTTLQLHNLVYEKSHYLKAIKACKDFKSKYPDIELVPEEEFFRDAPKDIKDSVLSKDSAHNLMLKRLNFELYQRKELCKHHAKLEQQKKILLETIANRKKFLTSLPSHLKSLKKASLPVQNQLGITHTKKLKQHHSAELLPPALYVIYSQLLAQKEAFAEPIDLEIVGSLKDAQAFARSQANKDTGISTVMDSSKLEDDVHDDEEDGQRRRKRPRRVEVKESPDQGGIFKSHPLKIIINVYEDESSDPKPAKLITLRFEYVVKLNIVCVGVEGSNDGPDNDILCNLFPNDTGLELPHQSAKLFVQDAMAFNTQRTSRPFKWAQHLAGIDFLPEVSPLLPADNSEAAKSEDVVSGLTLYRQQNRVQTVLQRIRSRRKAQLALLEQLESLTKLEWPLLSCKSVPWALHTPLCKLDGWSPIRALPVPSEVSSPAIIDKEEHVQESMDVDVIENSGVTKGELDSMTEDGELPTLLPKRTKFDHSKQASLISKSIIPSLNKVRSLSFKKGDDSSDFLLDTDSDFDDTAQIESEHEHSVSDYCATKSLSWMDSGVKEFFLVLSRKTNADERNVNLEAKIKISMEYPLRPPLFALSFCGRPSGEYHIENDGLEWYNELRAIEAEVNLHMLKTLPVTEHNYVLAHQVSCLAMLFDYYLDDGLSSERTNCTTLVDVGLCKPVSGGFLGRSFRGRDHRKTISWKDTKFTSNWPK*