AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0525900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0525900 MtrunA17_Chr7g0272621 96.767 433 14 0 1 433 1 433 0.0 848
Msa0525900 MtrunA17_Chr6g0450671 30.293 307 170 10 128 413 128 411 4.00e-32 126
Msa0525900 MtrunA17_Chr6g0453121 28.571 308 182 10 147 430 165 458 3.54e-30 121
Msa0525900 MtrunA17_Chr2g0285791 35.519 183 108 5 147 320 133 314 2.37e-22 97.1
Msa0525900 MtrunA17_Chr5g0426331 27.143 280 159 7 167 415 137 402 3.47e-19 89.4
Msa0525900 MtrunA17_Chr5g0426381 35.135 111 71 1 308 417 1 111 2.59e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0525900 AT5G27660.2 61.327 437 156 5 1 430 2 432 0.0 527
Msa0525900 AT5G27660.1 61.882 425 143 6 13 430 9 421 1.70e-180 510
Msa0525900 AT3G27925.1 31.193 327 178 11 128 429 135 439 9.02e-34 131
Msa0525900 AT3G27925.2 31.193 327 178 11 128 429 135 439 9.02e-34 131
Msa0525900 AT5G39830.1 29.545 308 179 10 147 430 155 448 4.45e-31 124
Msa0525900 AT5G39830.2 28.525 305 172 10 147 430 155 434 9.24e-27 112
Msa0525900 AT4G18370.1 36.458 192 110 6 147 328 131 320 2.07e-21 94.7

Find 150 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTGAGATCCTCTCCATTT+AGG 0.184232 3_4:+79550940 None:intergenic
CGTTGAAGAGTGTAGAATTT+TGG 0.246728 3_4:-79555914 Msa0525900:five_prime_UTR
GTTGAGATCCTCTCCATTTA+GGG 0.246868 3_4:+79550941 None:intergenic
TTCATTCCCTAATGTCAATA+AGG 0.269170 3_4:-79552563 Msa0525900:CDS
TGTATGGCACAGGGAAATTC+TGG 0.299439 3_4:-79553088 Msa0525900:intron
TCCTTCTTCGGACATGTCTA+AGG 0.309122 3_4:-79555160 Msa0525900:CDS
ATTGGCTTTGTAGATTTCTA+TGG 0.309418 3_4:-79554943 Msa0525900:intron
TGGAGGGCCACTTGTCAATA+TGG 0.315113 3_4:-79553068 Msa0525900:CDS
TCAACGCCAAGGGCCCTAAA+TGG 0.323892 3_4:-79550954 Msa0525900:three_prime_UTR
CTAGGCTTCGTCCCGGGGAT+TGG 0.328014 3_4:-79553512 Msa0525900:CDS
TGACCGTAAAAGCAGTGATT+TGG 0.333135 3_4:-79553263 Msa0525900:CDS
TGCGACTTTAAGTGTGATTC+CGG 0.337225 3_4:-79551214 Msa0525900:CDS
AGAATGCCCTTATTGACATT+AGG 0.346180 3_4:+79552556 None:intergenic
GGGTCCCCTGGTGATCGTGC+TGG 0.357975 3_4:-79551704 Msa0525900:CDS
GAATGCCCTTATTGACATTA+GGG 0.359755 3_4:+79552557 None:intergenic
ATCTATCATGAGTTATTTCC+TGG 0.362898 3_4:-79555884 Msa0525900:intron
AAGCCATCTAAGGATACTTT+TGG 0.364970 3_4:-79555108 Msa0525900:CDS
GACCGTAAAAGCAGTGATTT+GGG 0.371160 3_4:-79553262 Msa0525900:CDS
GACATGTCTAAGGAAACTTC+TGG 0.371904 3_4:-79555150 Msa0525900:CDS
ATCTGTTTGTAAATACTCTC+TGG 0.378364 3_4:+79553225 None:intergenic
TGATGAATCAAAGCCATCTA+AGG 0.379781 3_4:-79555118 Msa0525900:CDS
AGCAGTGATTTGGGATTTAG+TGG 0.380979 3_4:-79553253 Msa0525900:CDS
ATGTGAACAAGTGGTATATT+TGG 0.386975 3_4:-79551101 Msa0525900:three_prime_UTR
GATGTTGTCATTGAATTTGA+TGG 0.389841 3_4:-79551668 Msa0525900:CDS
AAGGAGTGAACGGGAGGAAG+AGG 0.389975 3_4:+79550976 None:intergenic
AGTTAGCCCTGTTCCTTCTT+CGG 0.392277 3_4:-79555172 Msa0525900:CDS
TTGAACACAAACCTTCCCTT+TGG 0.396372 3_4:+79554813 None:intergenic
AAATGATGGTGGACAAAGTT+GGG 0.397529 3_4:-79551278 Msa0525900:CDS
TAGGCTTCGTCCCGGGGATT+GGG 0.404252 3_4:-79553511 Msa0525900:CDS
CAAAGCTTGGTTCTTCAACT+AGG 0.415056 3_4:-79553530 Msa0525900:CDS
TCCTCTCCATTTAGGGCCCT+TGG 0.417772 3_4:+79550948 None:intergenic
CCAAGCTTTGCTTCCGGAAG+TGG 0.420101 3_4:+79553543 None:intergenic
AAATTCTGAAACCCCACTTC+CGG 0.423531 3_4:-79553556 Msa0525900:CDS
CAAGATGGAAGGACATTTGA+GGG 0.423591 3_4:-79553627 Msa0525900:CDS
TTTAGGGCCCTTGGCGTTGA+AGG 0.425402 3_4:+79550957 None:intergenic
CTTCAACTAGGCTTCGTCCC+GGG 0.427401 3_4:-79553518 Msa0525900:CDS
CGGAACCCAGCACGATCACC+AGG 0.431496 3_4:+79551698 None:intergenic
TGCCATTGCAAGATATATCA+TGG 0.437451 3_4:-79555386 Msa0525900:CDS
CTACCAAAAGTATCCTTAGA+TGG 0.439534 3_4:+79555105 None:intergenic
TCATTCCCTAATGTCAATAA+GGG 0.444524 3_4:-79552562 Msa0525900:CDS
GGAATCCAATCTCAGCTTGT+AGG 0.450834 3_4:-79551190 Msa0525900:exon
AACTAATGACTAAAGTGAAC+GGG 0.452413 3_4:+79550919 None:intergenic
AGTCTCCTACAAGCTGAGAT+TGG 0.457251 3_4:+79551185 None:intergenic
GGTCCCCTGGTGATCGTGCT+GGG 0.461837 3_4:-79551703 Msa0525900:CDS
ACTGGAATTAGTGTGGTTAT+CGG 0.462039 3_4:+79555696 None:intergenic
ACATGTCTAAGGAAACTTCT+GGG 0.469601 3_4:-79555149 Msa0525900:CDS
GAAGAACCAAGCTTTGCTTC+CGG 0.472595 3_4:+79553537 None:intergenic
GTGGACGTAACAAATCAAAC+GGG 0.472824 3_4:+79555349 None:intergenic
TTTGCTACAGGGAAGAGTAT+TGG 0.475530 3_4:-79554919 Msa0525900:CDS
GTTGCAGGTTATTGAAATGA+TGG 0.475950 3_4:-79551292 Msa0525900:intron
TAGGTAACTCCTGGGTCCCC+TGG 0.475953 3_4:-79551716 Msa0525900:CDS
AGTGTTGGCTGCTGATGGGT+TGG 0.476294 3_4:-79553014 Msa0525900:CDS
AGGAGTGAACGGGAGGAAGA+GGG 0.476400 3_4:+79550977 None:intergenic
TCCTTAGACATGTCCGAAGA+AGG 0.477491 3_4:+79555159 None:intergenic
ATAGAGCATTTCAAGAAAAG+TGG 0.478194 3_4:-79552956 Msa0525900:CDS
TGTGGACGTAACAAATCAAA+CGG 0.478244 3_4:+79555348 None:intergenic
GTGTTGGCTGCTGATGGGTT+GGG 0.482417 3_4:-79553013 Msa0525900:CDS
GACATGTCCGAAGAAGGAAC+AGG 0.489693 3_4:+79555165 None:intergenic
TACCTCCTTCATGCTTTCCA+CGG 0.491263 3_4:+79551640 None:intergenic
CAAGCTTTGCTTCCGGAAGT+GGG 0.491393 3_4:+79553544 None:intergenic
AGCTCTGCCGTTGGAGCTGT+GGG 0.496151 3_4:-79555751 Msa0525900:CDS
GATCGTGCTGGGTTCCGTCC+TGG 0.498642 3_4:-79551692 Msa0525900:CDS
TTGGCGTTGAAGGAGTGAAC+GGG 0.499034 3_4:+79550967 None:intergenic
GCAAGATGGAAGGACATTTG+AGG 0.500220 3_4:-79553628 Msa0525900:CDS
ATTGAAGTCACTTTGCAAGA+TGG 0.504105 3_4:-79553642 Msa0525900:CDS
CGGGGATTGGGTAATAGCCA+TGG 0.506433 3_4:-79553499 Msa0525900:CDS
ATCGAAATATTAACAACAGC+AGG 0.506520 3_4:+79555048 None:intergenic
CCACTTCCGGAAGCAAAGCT+TGG 0.510741 3_4:-79553543 Msa0525900:CDS
AAGGACATTTGAGGGGAAAG+TGG 0.512120 3_4:-79553619 Msa0525900:CDS
AGAGTGATACGGCCATGGCT+TGG 0.514213 3_4:-79552643 Msa0525900:CDS
GGAACAATCATTAACAAAGA+TGG 0.515974 3_4:-79554892 Msa0525900:CDS
ATGAAAGTGTTGGCTGCTGA+TGG 0.519245 3_4:-79553019 Msa0525900:CDS
TTCAACTAGGCTTCGTCCCG+GGG 0.519860 3_4:-79553517 Msa0525900:CDS
AAGCTCTGCCGTTGGAGCTG+TGG 0.521174 3_4:-79555752 Msa0525900:CDS
GCAAATGCTGCTGCTAAAGT+TGG 0.521599 3_4:-79555072 Msa0525900:CDS
CGTTCACTCCTTCAACGCCA+AGG 0.524270 3_4:-79550965 Msa0525900:three_prime_UTR
GAAATGATGGTGGACAAAGT+TGG 0.526009 3_4:-79551279 Msa0525900:CDS
ACCTCCTTCATGCTTTCCAC+GGG 0.531605 3_4:+79551641 None:intergenic
GCACAAAAGGTTCATCCAAA+GGG 0.534147 3_4:-79554828 Msa0525900:CDS
CATGAAAATCAACGACAACA+TGG 0.539853 3_4:+79554851 None:intergenic
TCTTCAACTAGGCTTCGTCC+CGG 0.539957 3_4:-79553519 Msa0525900:CDS
TCAGGAGAGTGATACGGCCA+TGG 0.540162 3_4:-79552648 Msa0525900:intron
ACAGGGAAGAGTATTGGCTC+TGG 0.541432 3_4:-79554913 Msa0525900:CDS
CTGTCACTGCTGGTATTGTA+AGG 0.545354 3_4:-79553452 Msa0525900:intron
CATGGCTATTACCCAATCCC+CGG 0.547015 3_4:+79553500 None:intergenic
AAGGGAATGCGGACAACCCA+TGG 0.551296 3_4:+79553482 None:intergenic
GGCACAAAAGGTTCATCCAA+AGG 0.554675 3_4:-79554829 Msa0525900:CDS
TAAGGGCATTCTTGTACCAA+TGG 0.554993 3_4:-79552545 Msa0525900:intron
TTGAACAGAAGCTCTGCCGT+TGG 0.555512 3_4:-79555760 Msa0525900:CDS
GGGCCACTTGTCAATATGGA+TGG 0.558327 3_4:-79553064 Msa0525900:CDS
GTTCACTCCTTCAACGCCAA+GGG 0.561597 3_4:-79550964 Msa0525900:three_prime_UTR
CTTCAGAATACTGTCACTGC+TGG 0.562372 3_4:-79553462 Msa0525900:CDS
TAGAGCATTTCAAGAAAAGT+GGG 0.563537 3_4:-79552955 Msa0525900:intron
ACACACAGAGTCGATTGGTA+CGG 0.565045 3_4:+79552985 None:intergenic
AGATATATCATGGTTGACAT+TGG 0.565755 3_4:-79555376 Msa0525900:CDS
AACCATGATATATCTTGCAA+TGG 0.566757 3_4:+79555384 None:intergenic
GATATATCTTGCAATGGCAA+AGG 0.570631 3_4:+79555390 None:intergenic
CAGCAGTGACAGTATTCTGA+AGG 0.571751 3_4:+79553463 None:intergenic
CAAGTTCTAATGTGAACAAG+TGG 0.573289 3_4:-79551110 Msa0525900:three_prime_UTR
TAGGAACGTTCGTACGTGTG+CGG 0.573882 3_4:-79555416 Msa0525900:CDS
AATATGGATGGAGAAATTGT+TGG 0.576439 3_4:-79553052 Msa0525900:CDS
TCTGTTTGTAAATACTCTCT+GGG 0.577942 3_4:+79553226 None:intergenic
AACGATACCCACAGCTCCAA+CGG 0.578717 3_4:+79555744 None:intergenic
GCTGTGGGTATCGTTGCTGT+TGG 0.578767 3_4:-79555736 Msa0525900:CDS
AAGCTGAGATTGGATTCCTC+CGG 0.580230 3_4:+79551195 None:intergenic
CACCGAAAAGGTTGTGACAG+TGG 0.581944 3_4:-79555952 Msa0525900:five_prime_UTR
AAGTCACTTTGCAAGATGGA+AGG 0.582092 3_4:-79553638 Msa0525900:CDS
CTTGGCGTTGAAGGAGTGAA+CGG 0.585542 3_4:+79550966 None:intergenic
AAACTAATGACTAAAGTGAA+CGG 0.587325 3_4:+79550918 None:intergenic
GGGGATTGGGTAATAGCCAT+GGG 0.587526 3_4:-79553498 Msa0525900:CDS
ATGAAAATCAACGACAACAT+GGG 0.587711 3_4:+79554852 None:intergenic
AAAAGGTTCATCCAAAGGGA+AGG 0.590674 3_4:-79554824 Msa0525900:intron
ATGGCTATTACCCAATCCCC+GGG 0.595774 3_4:+79553501 None:intergenic
GGTCAAGTTGGTAGAGCCAG+AGG 0.599131 3_4:+79551054 None:intergenic
TGAAAGTGTTGGCTGCTGAT+GGG 0.600081 3_4:-79553018 Msa0525900:CDS
GAACCCAGCACGATCACCAG+GGG 0.600193 3_4:+79551700 None:intergenic
GCACGATCACCAGGGGACCC+AGG 0.601429 3_4:+79551707 None:intergenic
ATTGCTCACTGGAATTAGTG+TGG 0.602326 3_4:+79555689 None:intergenic
TCTCCATCCATATTGACAAG+TGG 0.603386 3_4:+79553061 None:intergenic
CAAAGTTGGGGTGCCCATGA+AGG 0.604534 3_4:-79551265 Msa0525900:CDS
AACAGATTGTGCAATTAATG+TGG 0.605597 3_4:-79553209 Msa0525900:intron
CATGTCTAAGGAAACTTCTG+GGG 0.608468 3_4:-79555148 Msa0525900:CDS
TGAATTTGATGGAAAGCCCG+TGG 0.609844 3_4:-79551657 Msa0525900:CDS
TGGTCGAAAGACGACAAATG+TGG 0.613228 3_4:+79555330 None:intergenic
AAAGCCCGTGGAAAGCATGA+AGG 0.616163 3_4:-79551645 Msa0525900:CDS
AAGCTTTGCTTCCGGAAGTG+GGG 0.621714 3_4:+79553545 None:intergenic
TTGTCGTCTTTCGACCAACA+TGG 0.625198 3_4:-79555324 Msa0525900:intron
AATTCAATGACAACATCACC+AGG 0.627515 3_4:+79551674 None:intergenic
AGCATTCTTAGTCCAAGCCA+TGG 0.630955 3_4:+79552631 None:intergenic
TTGATGGTGTACAACAAAGC+TGG 0.638889 3_4:+79551014 None:intergenic
AGCAGTGACAGTATTCTGAA+GGG 0.641778 3_4:+79553464 None:intergenic
GTTAATATTTCGATTCCACA+AGG 0.645580 3_4:-79555039 Msa0525900:intron
GCCAAGGGCCCTAAATGGAG+AGG 0.645596 3_4:-79550949 Msa0525900:three_prime_UTR
AGAAAGAGGACAAACCATGT+TGG 0.646314 3_4:+79555310 None:intergenic
GGAACCCAGCACGATCACCA+GGG 0.647337 3_4:+79551699 None:intergenic
GACTTTAAGTGTGATTCCGG+AGG 0.648706 3_4:-79551211 Msa0525900:CDS
ACAGTATTCTGAAGGGAATG+CGG 0.654266 3_4:+79553471 None:intergenic
ATGGCACAGGGAAATTCTGG+AGG 0.659592 3_4:-79553085 Msa0525900:intron
CAATGACAACATCACCAGGA+CGG 0.663393 3_4:+79551678 None:intergenic
GCCCGTGGAAAGCATGAAGG+AGG 0.665398 3_4:-79551642 Msa0525900:intron
AACTTGTCATCAATGAAACA+AGG 0.669183 3_4:+79551127 None:intergenic
GCAGGTTATTGAAATGATGG+TGG 0.673889 3_4:-79551289 Msa0525900:intron
AGTGAACATCATGAAAGTGT+TGG 0.676552 3_4:-79553029 Msa0525900:CDS
GCGTTGAAGGAGTGAACGGG+AGG 0.677613 3_4:+79550970 None:intergenic
ACATGTCCGAAGAAGGAACA+GGG 0.682454 3_4:+79555166 None:intergenic
TGGCACAGGGAAATTCTGGA+GGG 0.686679 3_4:-79553084 Msa0525900:intron
AAGATGGAAGGACATTTGAG+GGG 0.693003 3_4:-79553626 Msa0525900:CDS
AATGATGGTGGACAAAGTTG+GGG 0.709009 3_4:-79551277 Msa0525900:CDS
ATGTCTAAGGAAACTTCTGG+GGG 0.710738 3_4:-79555147 Msa0525900:CDS
TGGACGTAACAAATCAAACG+GGG 0.745894 3_4:+79555350 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAAAGTAAAAGAAAAT+AGG + chr3_4:79553459-79553478 None:intergenic 10.0%
!!! TTTTTTTATAACAATAACAA+CGG - chr3_4:79554859-79554878 Msa0525900:CDS 10.0%
!! TAATCTTGAAATAAAGTTAA+TGG - chr3_4:79551198-79551217 Msa0525900:CDS 15.0%
!!! TATTTTCAGAATAATTTTCT+AGG + chr3_4:79554628-79554647 None:intergenic 15.0%
!! TAAGATAAAATAAAATGATC+TGG - chr3_4:79555285-79555304 Msa0525900:intron 15.0%
!! AAGATAAAATAAAATGATCT+GGG - chr3_4:79555286-79555305 Msa0525900:intron 15.0%
!! AATAATCAATTCATCTAACA+TGG - chr3_4:79551390-79551409 Msa0525900:intron 20.0%
!!! ATTTAGAACTGAAAATTTGT+AGG - chr3_4:79551619-79551638 Msa0525900:intron 20.0%
!!! TTTAGAACTGAAAATTTGTA+GGG - chr3_4:79551620-79551639 Msa0525900:intron 20.0%
!! AAGAAATATATCTTGAATTG+TGG + chr3_4:79552572-79552591 None:intergenic 20.0%
!! TGTTAAATCTAACATTGAAA+TGG + chr3_4:79553485-79553504 None:intergenic 20.0%
!!! CTGATTTTTTAAATGTCTTT+TGG - chr3_4:79553509-79553528 Msa0525900:CDS 20.0%
!!! TTCATGTATTGTATGATTTT+TGG - chr3_4:79553541-79553560 Msa0525900:CDS 20.0%
!! GATCATAATATATCCATAAA+AGG + chr3_4:79554072-79554091 None:intergenic 20.0%
!!! AGTAAACTTTTTTTCTTTTC+AGG - chr3_4:79554172-79554191 Msa0525900:intron 20.0%
!! AAAATTACACAAAACATAAG+CGG + chr3_4:79554939-79554958 None:intergenic 20.0%
!!! AAATTTAAACGTTTTTGACT+AGG - chr3_4:79555103-79555122 Msa0525900:CDS 20.0%
!! AGATAAAATAAAATGATCTG+GGG - chr3_4:79555287-79555306 Msa0525900:intron 20.0%
!! CAAACTTATACTAATCTTTA+GGG - chr3_4:79555356-79555375 Msa0525900:CDS 20.0%
! AGAAAGAATTAACAATTACC+AGG + chr3_4:79550975-79550994 None:intergenic 25.0%
! GATGTATTTGTGAAAAACTA+AGG + chr3_4:79552457-79552476 None:intergenic 25.0%
! TGGTATATACTAACTAGTTA+TGG + chr3_4:79552552-79552571 None:intergenic 25.0%
! AATTCAATTGTTAGAGTGAT+AGG + chr3_4:79552690-79552709 None:intergenic 25.0%
! TATTAAAAGTGAATGTGGAA+AGG + chr3_4:79552722-79552741 None:intergenic 25.0%
!!! TCCACATTCACTTTTAATAA+TGG - chr3_4:79552723-79552742 Msa0525900:intron 25.0%
!!! CCACATTCACTTTTAATAAT+GGG - chr3_4:79552724-79552743 Msa0525900:intron 25.0%
! AGGATGTTAAGAAAGATAAA+GGG + chr3_4:79552788-79552807 None:intergenic 25.0%
! TCTTGATATTCTTATGTTGT+AGG - chr3_4:79552952-79552971 Msa0525900:intron 25.0%
!! TTGAGTCTTAAATGATTTTC+AGG + chr3_4:79553061-79553080 None:intergenic 25.0%
! AAAGAAAATAGGTTAAAACC+AGG + chr3_4:79553448-79553467 None:intergenic 25.0%
! TTCAGATTGTCACATATAAA+CGG + chr3_4:79553993-79554012 None:intergenic 25.0%
!! CTTACAATTTTCACCTTTTA+TGG - chr3_4:79554056-79554075 Msa0525900:intron 25.0%
! GTCAATCAAAATTGTTTATG+CGG + chr3_4:79554094-79554113 None:intergenic 25.0%
!! TTGATTGACATACTTTTATG+TGG - chr3_4:79554105-79554124 Msa0525900:intron 25.0%
! CATCTAAAGATCGATTAATT+GGG + chr3_4:79554325-79554344 None:intergenic 25.0%
!! ATACTTGTTACTATCATACT+TGG - chr3_4:79554570-79554589 Msa0525900:intron 25.0%
! TTTGATCTATCAATAAGATG+AGG + chr3_4:79554653-79554672 None:intergenic 25.0%
! ATTACAAATCAAAGAGAAGA+TGG - chr3_4:79554747-79554766 Msa0525900:intron 25.0%
! GATAAAATAAAATGATCTGG+GGG - chr3_4:79555288-79555307 Msa0525900:intron 25.0%
! CCTAAAGATTAGTATAAGTT+TGG + chr3_4:79555358-79555377 None:intergenic 25.0%
! CCAAACTTATACTAATCTTT+AGG - chr3_4:79555355-79555374 Msa0525900:CDS 25.0%
! CATAATGAAGAATAATCTCA+CGG + chr3_4:79555480-79555499 None:intergenic 25.0%
! AAACTAATGACTAAAGTGAA+CGG + chr3_4:79555923-79555942 None:intergenic 25.0%
! ATCTATCATGAGTTATTTCC+TGG - chr3_4:79550954-79550973 Msa0525900:three_prime_UTR 30.0%
! TTGAAGAATCTCTCTGATTT+TGG - chr3_4:79551021-79551040 Msa0525900:three_prime_UTR 30.0%
! TGAAGAATCTCTCTGATTTT+GGG - chr3_4:79551022-79551041 Msa0525900:three_prime_UTR 30.0%
AGATTTAGTTAATTGCTCAC+TGG + chr3_4:79551163-79551182 None:intergenic 30.0%
! TTAATGGCATGCTTTTCAAT+TGG - chr3_4:79551214-79551233 Msa0525900:CDS 30.0%
AATATTGACGATGCATACAA+AGG - chr3_4:79551354-79551373 Msa0525900:intron 30.0%
TCTAACATGGCTTCAAATTT+AGG - chr3_4:79551403-79551422 Msa0525900:intron 30.0%
AACCATGATATATCTTGCAA+TGG + chr3_4:79551457-79551476 None:intergenic 30.0%
AGATATATCATGGTTGACAT+TGG - chr3_4:79551462-79551481 Msa0525900:intron 30.0%
TAAAAGTTCAAACCAGAAAG+AGG + chr3_4:79551545-79551564 None:intergenic 30.0%
ATCGAAATATTAACAACAGC+AGG + chr3_4:79551793-79551812 None:intergenic 30.0%
GTTAATATTTCGATTCCACA+AGG - chr3_4:79551799-79551818 Msa0525900:intron 30.0%
AACGATTCATTCAGATGAAA+AGG + chr3_4:79551833-79551852 None:intergenic 30.0%
!! ATTGGCTTTGTAGATTTCTA+TGG - chr3_4:79551895-79551914 Msa0525900:intron 30.0%
!! ATTTCTATGGTTTTGCTACA+GGG - chr3_4:79551908-79551927 Msa0525900:intron 30.0%
GGAACAATCATTAACAAAGA+TGG - chr3_4:79551946-79551965 Msa0525900:intron 30.0%
ATGAAAATCAACGACAACAT+GGG + chr3_4:79551989-79552008 None:intergenic 30.0%
TTCAAGACAGTGTACATATT+TGG + chr3_4:79552067-79552086 None:intergenic 30.0%
ATATAACTGTAGCTTGATAC+TGG + chr3_4:79552201-79552220 None:intergenic 30.0%
CTACATGAGTTAGAATAAGA+CGG - chr3_4:79552524-79552543 Msa0525900:intron 30.0%
GAAAGAAAGTTCAACTGTTA+GGG + chr3_4:79552649-79552668 None:intergenic 30.0%
TGAAAGAAAGTTCAACTGTT+AGG + chr3_4:79552650-79552669 None:intergenic 30.0%
CCCATTATTAAAAGTGAATG+TGG + chr3_4:79552727-79552746 None:intergenic 30.0%
CAAGATTAGAGAGAAAATTG+TGG + chr3_4:79552755-79552774 None:intergenic 30.0%
GAGGATGTTAAGAAAGATAA+AGG + chr3_4:79552789-79552808 None:intergenic 30.0%
ACTGTAATGAGCTTATGTAT+GGG + chr3_4:79552842-79552861 None:intergenic 30.0%
TACTGTAATGAGCTTATGTA+TGG + chr3_4:79552843-79552862 None:intergenic 30.0%
ATGATAGTTTATCATGCTGT+AGG - chr3_4:79552866-79552885 Msa0525900:intron 30.0%
ATATCAAGAACCAATTGTTC+TGG + chr3_4:79552941-79552960 None:intergenic 30.0%
ATATTGAGAACCAATTGATC+CGG + chr3_4:79552999-79553018 None:intergenic 30.0%
TCTGTTTGTAAATACTCTCT+GGG + chr3_4:79553615-79553634 None:intergenic 30.0%
ATCTGTTTGTAAATACTCTC+TGG + chr3_4:79553616-79553635 None:intergenic 30.0%
AACAGATTGTGCAATTAATG+TGG - chr3_4:79553629-79553648 Msa0525900:CDS 30.0%
ATAAACTACCCAAGTAGATA+TGG - chr3_4:79553678-79553697 Msa0525900:intron 30.0%
TCCATATTCCATATCTACTT+GGG + chr3_4:79553689-79553708 None:intergenic 30.0%
ATCCATATTCCATATCTACT+TGG + chr3_4:79553690-79553709 None:intergenic 30.0%
GTAGATATGGAATATGGATT+TGG - chr3_4:79553691-79553710 Msa0525900:intron 30.0%
AATATGGATGGAGAAATTGT+TGG - chr3_4:79553786-79553805 Msa0525900:intron 30.0%
! ATAGAGCATTTCAAGAAAAG+TGG - chr3_4:79553882-79553901 Msa0525900:intron 30.0%
! TAGAGCATTTCAAGAAAAGT+GGG - chr3_4:79553883-79553902 Msa0525900:intron 30.0%
TCCAAGCAGAAAGTTTAATT+AGG - chr3_4:79554027-79554046 Msa0525900:intron 30.0%
TGGTTAATACTTGAGTAGTT+AGG - chr3_4:79554125-79554144 Msa0525900:intron 30.0%
TTCATTCCCTAATGTCAATA+AGG - chr3_4:79554275-79554294 Msa0525900:intron 30.0%
TCATTCCCTAATGTCAATAA+GGG - chr3_4:79554276-79554295 Msa0525900:intron 30.0%
ATTAATTGGGAACATACCAT+TGG + chr3_4:79554312-79554331 None:intergenic 30.0%
GCATCTAAAGATCGATTAAT+TGG + chr3_4:79554326-79554345 None:intergenic 30.0%
! TTTTCAGAATCTAGATTCAC+AGG - chr3_4:79554358-79554377 Msa0525900:intron 30.0%
TTCAAAGTTGTTTGCAAAGT+TGG - chr3_4:79554428-79554447 Msa0525900:intron 30.0%
TTATTATGTTAGTGAAGCCA+TGG - chr3_4:79554530-79554549 Msa0525900:intron 30.0%
TATTATGTTAGTGAAGCCAT+GGG - chr3_4:79554531-79554550 Msa0525900:intron 30.0%
TGTTACTATCATACTTGGAT+AGG - chr3_4:79554575-79554594 Msa0525900:intron 30.0%
GTTACTATCATACTTGGATA+GGG - chr3_4:79554576-79554595 Msa0525900:intron 30.0%
CTAGGATTCTCACTTTAATA+GGG + chr3_4:79554610-79554629 None:intergenic 30.0%
! TCTAGGATTCTCACTTTAAT+AGG + chr3_4:79554611-79554630 None:intergenic 30.0%
AAGTGAACACAAAAACAAAG+AGG - chr3_4:79554671-79554690 Msa0525900:intron 30.0%
CGTAACTATCACAATTAGAT+AGG + chr3_4:79554825-79554844 None:intergenic 30.0%
AATGTTGTCTAATCAGAAAG+AGG + chr3_4:79554895-79554914 None:intergenic 30.0%
GAAATAATGTGTTTGTCACA+AGG - chr3_4:79555080-79555099 Msa0525900:CDS 30.0%
GATGTTGTCATTGAATTTGA+TGG - chr3_4:79555170-79555189 Msa0525900:CDS 30.0%
!!! TCGATTTTTTTTACTGTCTG+TGG + chr3_4:79555457-79555476 None:intergenic 30.0%
CATAGATGTAAAATTGTTGC+AGG - chr3_4:79555531-79555550 Msa0525900:intron 30.0%
!! CTTTTAACTACAACCTTCAT+GGG + chr3_4:79555589-79555608 None:intergenic 30.0%
!! TCTTTTAACTACAACCTTCA+TGG + chr3_4:79555590-79555609 None:intergenic 30.0%
AACTTGTCATCAATGAAACA+AGG + chr3_4:79555714-79555733 None:intergenic 30.0%
ATGTGAACAAGTGGTATATT+TGG - chr3_4:79555737-79555756 Msa0525900:CDS 30.0%
!!! CCTTTATTTTTTGGTCAAGT+TGG + chr3_4:79555799-79555818 None:intergenic 30.0%
CCAACTTGACCAAAAAATAA+AGG - chr3_4:79555796-79555815 Msa0525900:intron 30.0%
!!! CTGGTAGAACCTTTATTTTT+TGG + chr3_4:79555808-79555827 None:intergenic 30.0%
! GGAGAAAAATTTAGTGTTGA+TGG + chr3_4:79555843-79555862 None:intergenic 30.0%
AACTAATGACTAAAGTGAAC+GGG + chr3_4:79555922-79555941 None:intergenic 30.0%
!! CGTTGAAGAGTGTAGAATTT+TGG - chr3_4:79550924-79550943 Msa0525900:three_prime_UTR 35.0%
! GAAGAATCTCTCTGATTTTG+GGG - chr3_4:79551023-79551042 Msa0525900:three_prime_UTR 35.0%
! AAGAATCTCTCTGATTTTGG+GGG - chr3_4:79551024-79551043 Msa0525900:three_prime_UTR 35.0%
ACTGGAATTAGTGTGGTTAT+CGG + chr3_4:79551145-79551164 None:intergenic 35.0%
GATATATCTTGCAATGGCAA+AGG + chr3_4:79551451-79551470 None:intergenic 35.0%
TGCCATTGCAAGATATATCA+TGG - chr3_4:79551452-79551471 Msa0525900:intron 35.0%
TGTGGACGTAACAAATCAAA+CGG + chr3_4:79551493-79551512 None:intergenic 35.0%
CACATACATCTAAACATGCA+TGG + chr3_4:79551595-79551614 None:intergenic 35.0%
ACATGTCTAAGGAAACTTCT+GGG - chr3_4:79551689-79551708 Msa0525900:CDS 35.0%
TGATGAATCAAAGCCATCTA+AGG - chr3_4:79551720-79551739 Msa0525900:intron 35.0%
! AAGCCATCTAAGGATACTTT+TGG - chr3_4:79551730-79551749 Msa0525900:intron 35.0%
!! CTACCAAAAGTATCCTTAGA+TGG + chr3_4:79551736-79551755 None:intergenic 35.0%
GAAAAGGTAGAAAAACCTTG+TGG + chr3_4:79551817-79551836 None:intergenic 35.0%
!!! CTCTTTTGAGATTATGCTGA+TGG - chr3_4:79551864-79551883 Msa0525900:intron 35.0%
TTGAGATTATGCTGATGGTT+TGG - chr3_4:79551869-79551888 Msa0525900:intron 35.0%
!! GATTTCTATGGTTTTGCTAC+AGG - chr3_4:79551907-79551926 Msa0525900:intron 35.0%
CATGAAAATCAACGACAACA+TGG + chr3_4:79551990-79552009 None:intergenic 35.0%
!!! CATGTTGTCGTTGATTTTCA+TGG - chr3_4:79551988-79552007 Msa0525900:intron 35.0%
!! GTTGATTTTCATGGCACAAA+AGG - chr3_4:79551997-79552016 Msa0525900:intron 35.0%
GAAGGTTTGTGTTCAAGAAA+GGG - chr3_4:79552032-79552051 Msa0525900:intron 35.0%
AGTTCTCTGTGATGTAAATG+TGG - chr3_4:79552118-79552137 Msa0525900:intron 35.0%
! TGCAAACGAAACATGCTTTT+GGG + chr3_4:79552167-79552186 None:intergenic 35.0%
! ATGCAAACGAAACATGCTTT+TGG + chr3_4:79552168-79552187 None:intergenic 35.0%
CTTTGTATGACTCAAAGCTA+GGG - chr3_4:79552277-79552296 Msa0525900:intron 35.0%
GTACTTTCTGAGTCATGATT+TGG - chr3_4:79552326-79552345 Msa0525900:intron 35.0%
TGATCCATTCCCAACAAAAT+AGG - chr3_4:79552357-79552376 Msa0525900:intron 35.0%
GATCCATTCCCAACAAAATA+GGG - chr3_4:79552358-79552377 Msa0525900:intron 35.0%
! AAGCAATGCCCTATTTTGTT+GGG + chr3_4:79552369-79552388 None:intergenic 35.0%
! TAAGCAATGCCCTATTTTGT+TGG + chr3_4:79552370-79552389 None:intergenic 35.0%
! TCGTTTTCATTCAGTTCTGT+AGG + chr3_4:79552412-79552431 None:intergenic 35.0%
ACTGTAACAACCAAACCTTT+AGG - chr3_4:79552492-79552511 Msa0525900:intron 35.0%
AGTTCAACTGTTAGGGTAAA+AGG + chr3_4:79552642-79552661 None:intergenic 35.0%
AAAAGTGAATGTGGAAAGGA+AGG + chr3_4:79552718-79552737 None:intergenic 35.0%
AACAGCAAAAAGGCAAAATG+AGG + chr3_4:79552808-79552827 None:intergenic 35.0%
CTGAAAACTCAACAGCAAAA+AGG + chr3_4:79552818-79552837 None:intergenic 35.0%
GCTAAATGAGCTACTATACA+AGG + chr3_4:79552892-79552911 None:intergenic 35.0%
ATAGTAGCTCATTTAGCTGT+AGG - chr3_4:79552895-79552914 Msa0525900:intron 35.0%
! ATTGAAGTCACTTTGCAAGA+TGG - chr3_4:79553196-79553215 Msa0525900:intron 35.0%
!! ATCCCAAATCACTGCTTTTA+CGG + chr3_4:79553581-79553600 None:intergenic 35.0%
ATCTACTTGGGTAGTTTATG+CGG + chr3_4:79553677-79553696 None:intergenic 35.0%
ACCCAAGTAGATATGGAATA+TGG - chr3_4:79553685-79553704 Msa0525900:intron 35.0%
TTGCATGTTATCTGCTTGTA+TGG - chr3_4:79553734-79553753 Msa0525900:intron 35.0%
! AGTGAACATCATGAAAGTGT+TGG - chr3_4:79553809-79553828 Msa0525900:intron 35.0%
! ATTTTACACACAGAGTCGAT+TGG + chr3_4:79553861-79553880 None:intergenic 35.0%
AAGAAAAGTGGGTATGTTTC+TGG - chr3_4:79553894-79553913 Msa0525900:intron 35.0%
GCCTAATTAAACTTTCTGCT+TGG + chr3_4:79554031-79554050 None:intergenic 35.0%
!! TTCTTTTCAGGAGAGTGATA+CGG - chr3_4:79554184-79554203 Msa0525900:intron 35.0%
GAATGCCCTTATTGACATTA+GGG + chr3_4:79554284-79554303 None:intergenic 35.0%
AGAATGCCCTTATTGACATT+AGG + chr3_4:79554285-79554304 None:intergenic 35.0%
!! TGCTTTCTTTTGCTATGCTT+TGG - chr3_4:79554490-79554509 Msa0525900:intron 35.0%
TAATCAGAAAGAGGAGTAAG+GGG + chr3_4:79554886-79554905 None:intergenic 35.0%
CTAATCAGAAAGAGGAGTAA+GGG + chr3_4:79554887-79554906 None:intergenic 35.0%
TCTAATCAGAAAGAGGAGTA+AGG + chr3_4:79554888-79554907 None:intergenic 35.0%
TACACAAAACATAAGCGGAA+TGG + chr3_4:79554934-79554953 None:intergenic 35.0%
GAGCAACACAATGCATATTA+TGG + chr3_4:79555033-79555052 None:intergenic 35.0%
!! TTTTTGACTAGGTAACTCCT+GGG - chr3_4:79555114-79555133 Msa0525900:CDS 35.0%
AATTCAATGACAACATCACC+AGG + chr3_4:79555167-79555186 None:intergenic 35.0%
GTTGCAGGTTATTGAAATGA+TGG - chr3_4:79555546-79555565 Msa0525900:intron 35.0%
!! AAATGATGGTGGACAAAGTT+GGG - chr3_4:79555560-79555579 Msa0525900:intron 35.0%
! CAAGTTCTAATGTGAACAAG+TGG - chr3_4:79555728-79555747 Msa0525900:CDS 35.0%
!!! GCACAAGTTTTTTTAACCTC+TGG - chr3_4:79555768-79555787 Msa0525900:CDS 35.0%
ATTGCTCACTGGAATTAGTG+TGG + chr3_4:79551152-79551171 None:intergenic 40.0%
TGGACGTAACAAATCAAACG+GGG + chr3_4:79551491-79551510 None:intergenic 40.0%
GTGGACGTAACAAATCAAAC+GGG + chr3_4:79551492-79551511 None:intergenic 40.0%
AGAAAGAGGACAAACCATGT+TGG + chr3_4:79551531-79551550 None:intergenic 40.0%
! AACATGGTTTGTCCTCTTTC+TGG - chr3_4:79551530-79551549 Msa0525900:intron 40.0%
GACATGTCTAAGGAAACTTC+TGG - chr3_4:79551688-79551707 Msa0525900:CDS 40.0%
CATGTCTAAGGAAACTTCTG+GGG - chr3_4:79551690-79551709 Msa0525900:CDS 40.0%
ATGTCTAAGGAAACTTCTGG+GGG - chr3_4:79551691-79551710 Msa0525900:CDS 40.0%
! ATGCTGATGGTTTGGAGTAT+TGG - chr3_4:79551877-79551896 Msa0525900:intron 40.0%
! TTTGCTACAGGGAAGAGTAT+TGG - chr3_4:79551919-79551938 Msa0525900:intron 40.0%
GCACAAAAGGTTCATCCAAA+GGG - chr3_4:79552010-79552029 Msa0525900:intron 40.0%
AAAAGGTTCATCCAAAGGGA+AGG - chr3_4:79552014-79552033 Msa0525900:intron 40.0%
TTGAACACAAACCTTCCCTT+TGG + chr3_4:79552028-79552047 None:intergenic 40.0%
GGAAGGTTTGTGTTCAAGAA+AGG - chr3_4:79552031-79552050 Msa0525900:intron 40.0%
! ATGTGGTAGAAGAGTACAGT+TGG - chr3_4:79552135-79552154 Msa0525900:intron 40.0%
GCTTTGTATGACTCAAAGCT+AGG - chr3_4:79552276-79552295 Msa0525900:intron 40.0%
! ATGCCCTATTTTGTTGGGAA+TGG + chr3_4:79552364-79552383 None:intergenic 40.0%
AACGACGATTCTGTGAATTC+TGG - chr3_4:79552427-79552446 Msa0525900:intron 40.0%
AACAACCAAACCTTTAGGTG+AGG - chr3_4:79552497-79552516 Msa0525900:intron 40.0%
ATGTAGTTGACCTCACCTAA+AGG + chr3_4:79552510-79552529 None:intergenic 40.0%
ATCTAAATCCCTGCTAACGT+TGG - chr3_4:79552594-79552613 Msa0525900:CDS 40.0%
!! TTGTATAGTAGCTTGCTTGC+CGG - chr3_4:79552977-79552996 Msa0525900:CDS 40.0%
! AAGTCACTTTGCAAGATGGA+AGG - chr3_4:79553200-79553219 Msa0525900:intron 40.0%
CAAGATGGAAGGACATTTGA+GGG - chr3_4:79553211-79553230 Msa0525900:CDS 40.0%
AAGATGGAAGGACATTTGAG+GGG - chr3_4:79553212-79553231 Msa0525900:CDS 40.0%
!! AAATTCTGAAACCCCACTTC+CGG - chr3_4:79553282-79553301 Msa0525900:intron 40.0%
! CAAAGCTTGGTTCTTCAACT+AGG - chr3_4:79553308-79553327 Msa0525900:intron 40.0%
! ACAGTATTCTGAAGGGAATG+CGG + chr3_4:79553370-79553389 None:intergenic 40.0%
AGCAGTGACAGTATTCTGAA+GGG + chr3_4:79553377-79553396 None:intergenic 40.0%
GGTGCGAAGATAAAACTTTC+TGG - chr3_4:79553407-79553426 Msa0525900:intron 40.0%
TGACCGTAAAAGCAGTGATT+TGG - chr3_4:79553575-79553594 Msa0525900:CDS 40.0%
GACCGTAAAAGCAGTGATTT+GGG - chr3_4:79553576-79553595 Msa0525900:CDS 40.0%
! AGCAGTGATTTGGGATTTAG+TGG - chr3_4:79553585-79553604 Msa0525900:CDS 40.0%
TCTACTTGGGTAGTTTATGC+GGG + chr3_4:79553676-79553695 None:intergenic 40.0%
TTATCTGCTTGTATGGCACA+GGG - chr3_4:79553741-79553760 Msa0525900:intron 40.0%
TCTCCATCCATATTGACAAG+TGG + chr3_4:79553780-79553799 None:intergenic 40.0%
!! TAAGGGCATTCTTGTACCAA+TGG - chr3_4:79554293-79554312 Msa0525900:intron 40.0%
TTCACAGGACAGTATCTTCA+TGG - chr3_4:79554373-79554392 Msa0525900:intron 40.0%
TTGTGATAGTTACGTGTAGC+AGG - chr3_4:79554831-79554850 Msa0525900:CDS 40.0%
CACAATGCATATTATGGCAG+AGG + chr3_4:79555027-79555046 None:intergenic 40.0%
!! GTTTTTGACTAGGTAACTCC+TGG - chr3_4:79555113-79555132 Msa0525900:CDS 40.0%
GCAGGTTATTGAAATGATGG+TGG - chr3_4:79555549-79555568 Msa0525900:intron 40.0%
!! GAAATGATGGTGGACAAAGT+TGG - chr3_4:79555559-79555578 Msa0525900:intron 40.0%
!! AATGATGGTGGACAAAGTTG+GGG - chr3_4:79555561-79555580 Msa0525900:intron 40.0%
TGCGACTTTAAGTGTGATTC+CGG - chr3_4:79555624-79555643 Msa0525900:intron 40.0%
!! TTGATGGTGTACAACAAAGC+TGG + chr3_4:79555827-79555846 None:intergenic 40.0%
GTTGAGATCCTCTCCATTTA+GGG + chr3_4:79555900-79555919 None:intergenic 40.0%
TGGTCGAAAGACGACAAATG+TGG + chr3_4:79551511-79551530 None:intergenic 45.0%
TTGTCGTCTTTCGACCAACA+TGG - chr3_4:79551514-79551533 Msa0525900:intron 45.0%
AGTTAGCCCTGTTCCTTCTT+CGG - chr3_4:79551666-79551685 Msa0525900:CDS 45.0%
ACATGTCCGAAGAAGGAACA+GGG + chr3_4:79551675-79551694 None:intergenic 45.0%
TCCTTCTTCGGACATGTCTA+AGG - chr3_4:79551678-79551697 Msa0525900:CDS 45.0%
TCCTTAGACATGTCCGAAGA+AGG + chr3_4:79551682-79551701 None:intergenic 45.0%
GCAAATGCTGCTGCTAAAGT+TGG - chr3_4:79551766-79551785 Msa0525900:intron 45.0%
GGCACAAAAGGTTCATCCAA+AGG - chr3_4:79552009-79552028 Msa0525900:intron 45.0%
TGTATGACTCAAAGCTAGGG+TGG - chr3_4:79552280-79552299 Msa0525900:intron 45.0%
TAGGGTGGCTTAAGATCTGA+TGG - chr3_4:79552295-79552314 Msa0525900:intron 45.0%
AGGGTGGCTTAAGATCTGAT+GGG - chr3_4:79552296-79552315 Msa0525900:intron 45.0%
GTTGACCTCACCTAAAGGTT+TGG + chr3_4:79552505-79552524 None:intergenic 45.0%
CTCAAAGTCCAACGTTAGCA+GGG + chr3_4:79552605-79552624 None:intergenic 45.0%
ACTCAAAGTCCAACGTTAGC+AGG + chr3_4:79552606-79552625 None:intergenic 45.0%
AGTGAATGTGGAAAGGAAGG+AGG + chr3_4:79552715-79552734 None:intergenic 45.0%
! AGCTTGCTTGCCAGAACAAT+TGG - chr3_4:79552928-79552947 Msa0525900:intron 45.0%
GGCAAGCAAGCTACTATACA+AGG + chr3_4:79552978-79552997 None:intergenic 45.0%
TCTGATGTCTTCATTGCACG+AGG + chr3_4:79553146-79553165 None:intergenic 45.0%
GCAAGATGGAAGGACATTTG+AGG - chr3_4:79553210-79553229 Msa0525900:CDS 45.0%
AAGGACATTTGAGGGGAAAG+TGG - chr3_4:79553219-79553238 Msa0525900:CDS 45.0%
GAAGAACCAAGCTTTGCTTC+CGG + chr3_4:79553304-79553323 None:intergenic 45.0%
CAGCAGTGACAGTATTCTGA+AGG + chr3_4:79553378-79553397 None:intergenic 45.0%
CTTCAGAATACTGTCACTGC+TGG - chr3_4:79553376-79553395 Msa0525900:intron 45.0%
CTGTCACTGCTGGTATTGTA+AGG - chr3_4:79553386-79553405 Msa0525900:intron 45.0%
TGGCTGTAAAAGATGTCTCC+TGG - chr3_4:79553427-79553446 Msa0525900:intron 45.0%
TGGGTAGTTTATGCGGGAAA+AGG + chr3_4:79553670-79553689 None:intergenic 45.0%
GTTATCTGCTTGTATGGCAC+AGG - chr3_4:79553740-79553759 Msa0525900:intron 45.0%
TGTATGGCACAGGGAAATTC+TGG - chr3_4:79553750-79553769 Msa0525900:intron 45.0%
!! ATGAAAGTGTTGGCTGCTGA+TGG - chr3_4:79553819-79553838 Msa0525900:intron 45.0%
!! TGAAAGTGTTGGCTGCTGAT+GGG - chr3_4:79553820-79553839 Msa0525900:intron 45.0%
ACACACAGAGTCGATTGGTA+CGG + chr3_4:79553856-79553875 None:intergenic 45.0%
AGCATTCTTAGTCCAAGCCA+TGG + chr3_4:79554210-79554229 None:intergenic 45.0%
TATGTTAGTGAAGCCATGGG+CGG - chr3_4:79554534-79554553 Msa0525900:intron 45.0%
! CATTGTGTTGCTCAAATGCG+AGG - chr3_4:79555040-79555059 Msa0525900:CDS 45.0%
CAATGACAACATCACCAGGA+CGG + chr3_4:79555163-79555182 None:intergenic 45.0%
TGAATTTGATGGAAAGCCCG+TGG - chr3_4:79555181-79555200 Msa0525900:CDS 45.0%
TACCTCCTTCATGCTTTCCA+CGG + chr3_4:79555201-79555220 None:intergenic 45.0%
ATCTGGGGGAGCAAAACAAT+TGG - chr3_4:79555302-79555321 Msa0525900:intron 45.0%
GACTTTAAGTGTGATTCCGG+AGG - chr3_4:79555627-79555646 Msa0525900:intron 45.0%
AAGCTGAGATTGGATTCCTC+CGG + chr3_4:79555646-79555665 None:intergenic 45.0%
GGAATCCAATCTCAGCTTGT+AGG - chr3_4:79555648-79555667 Msa0525900:intron 45.0%
AGTCTCCTACAAGCTGAGAT+TGG + chr3_4:79555656-79555675 None:intergenic 45.0%
GGTTGAGATCCTCTCCATTT+AGG + chr3_4:79555901-79555920 None:intergenic 45.0%
TTGAACAGAAGCTCTGCCGT+TGG - chr3_4:79551078-79551097 Msa0525900:three_prime_UTR 50.0%
AACGATACCCACAGCTCCAA+CGG + chr3_4:79551097-79551116 None:intergenic 50.0%
TAGGAACGTTCGTACGTGTG+CGG - chr3_4:79551422-79551441 Msa0525900:intron 50.0%
GACATGTCCGAAGAAGGAAC+AGG + chr3_4:79551676-79551695 None:intergenic 50.0%
!! ACAGGGAAGAGTATTGGCTC+TGG - chr3_4:79551925-79551944 Msa0525900:intron 50.0%
! GAAGTGCTACTGTTCCTGCT+TGG - chr3_4:79552247-79552266 Msa0525900:intron 50.0%
TACTGTTCCTGCTTGGTCTG+TGG - chr3_4:79552254-79552273 Msa0525900:intron 50.0%
TACAAAGCCACAGACCAAGC+AGG + chr3_4:79552264-79552283 None:intergenic 50.0%
! AGCTTGCTTGCCGGATCAAT+TGG - chr3_4:79552986-79553005 Msa0525900:CDS 50.0%
AAGCTTTGCTTCCGGAAGTG+GGG + chr3_4:79553296-79553315 None:intergenic 50.0%
CAAGCTTTGCTTCCGGAAGT+GGG + chr3_4:79553297-79553316 None:intergenic 50.0%
TCTTCAACTAGGCTTCGTCC+CGG - chr3_4:79553319-79553338 Msa0525900:intron 50.0%
ATGGCTATTACCCAATCCCC+GGG + chr3_4:79553340-79553359 None:intergenic 50.0%
CATGGCTATTACCCAATCCC+CGG + chr3_4:79553341-79553360 None:intergenic 50.0%
GGGGATTGGGTAATAGCCAT+GGG - chr3_4:79553340-79553359 Msa0525900:intron 50.0%
ATGGCACAGGGAAATTCTGG+AGG - chr3_4:79553753-79553772 Msa0525900:intron 50.0%
TGGCACAGGGAAATTCTGGA+GGG - chr3_4:79553754-79553773 Msa0525900:intron 50.0%
TGGAGGGCCACTTGTCAATA+TGG - chr3_4:79553770-79553789 Msa0525900:intron 50.0%
GGGCCACTTGTCAATATGGA+TGG - chr3_4:79553774-79553793 Msa0525900:intron 50.0%
GTAGAAGTTTGAACCGCCCA+TGG + chr3_4:79554550-79554569 None:intergenic 50.0%
! AAAGCCCGTGGAAAGCATGA+AGG - chr3_4:79555193-79555212 Msa0525900:CDS 50.0%
ACCTCCTTCATGCTTTCCAC+GGG + chr3_4:79555200-79555219 None:intergenic 50.0%
! TTGGCGTTGAAGGAGTGAAC+GGG + chr3_4:79555874-79555893 None:intergenic 50.0%
! CTTGGCGTTGAAGGAGTGAA+CGG + chr3_4:79555875-79555894 None:intergenic 50.0%
GTTCACTCCTTCAACGCCAA+GGG - chr3_4:79555874-79555893 Msa0525900:intron 50.0%
! GCTGTGGGTATCGTTGCTGT+TGG - chr3_4:79551102-79551121 Msa0525900:three_prime_UTR 55.0%
CCAAGCTTTGCTTCCGGAAG+TGG + chr3_4:79553298-79553317 None:intergenic 55.0%
CCACTTCCGGAAGCAAAGCT+TGG - chr3_4:79553295-79553314 Msa0525900:intron 55.0%
CTTCAACTAGGCTTCGTCCC+GGG - chr3_4:79553320-79553339 Msa0525900:intron 55.0%
TTCAACTAGGCTTCGTCCCG+GGG - chr3_4:79553321-79553340 Msa0525900:intron 55.0%
CGGGGATTGGGTAATAGCCA+TGG - chr3_4:79553339-79553358 Msa0525900:intron 55.0%
AAGGGAATGCGGACAACCCA+TGG + chr3_4:79553359-79553378 None:intergenic 55.0%
!! AGTGTTGGCTGCTGATGGGT+TGG - chr3_4:79553824-79553843 Msa0525900:intron 55.0%
!! GTGTTGGCTGCTGATGGGTT+GGG - chr3_4:79553825-79553844 Msa0525900:intron 55.0%
TCAGGAGAGTGATACGGCCA+TGG - chr3_4:79554190-79554209 Msa0525900:intron 55.0%
AGAGTGATACGGCCATGGCT+TGG - chr3_4:79554195-79554214 Msa0525900:intron 55.0%
! CAAAGTTGGGGTGCCCATGA+AGG - chr3_4:79555573-79555592 Msa0525900:intron 55.0%
!! GGTCAAGTTGGTAGAGCCAG+AGG + chr3_4:79555787-79555806 None:intergenic 55.0%
AGGAGTGAACGGGAGGAAGA+GGG + chr3_4:79555864-79555883 None:intergenic 55.0%
AAGGAGTGAACGGGAGGAAG+AGG + chr3_4:79555865-79555884 None:intergenic 55.0%
CGTTCACTCCTTCAACGCCA+AGG - chr3_4:79555873-79555892 Msa0525900:intron 55.0%
! TTTAGGGCCCTTGGCGTTGA+AGG + chr3_4:79555884-79555903 None:intergenic 55.0%
TCAACGCCAAGGGCCCTAAA+TGG - chr3_4:79555884-79555903 Msa0525900:intron 55.0%
! TCCTCTCCATTTAGGGCCCT+TGG + chr3_4:79555893-79555912 None:intergenic 55.0%
AAGCTCTGCCGTTGGAGCTG+TGG - chr3_4:79551086-79551105 Msa0525900:three_prime_UTR 60.0%
AGCTCTGCCGTTGGAGCTGT+GGG - chr3_4:79551087-79551106 Msa0525900:three_prime_UTR 60.0%
TAGGCTTCGTCCCGGGGATT+GGG - chr3_4:79553327-79553346 Msa0525900:intron 60.0%
TAGGTAACTCCTGGGTCCCC+TGG - chr3_4:79555122-79555141 Msa0525900:CDS 60.0%
GAACCCAGCACGATCACCAG+GGG + chr3_4:79555141-79555160 None:intergenic 60.0%
GGAACCCAGCACGATCACCA+GGG + chr3_4:79555142-79555161 None:intergenic 60.0%
! GCCCGTGGAAAGCATGAAGG+AGG - chr3_4:79555196-79555215 Msa0525900:CDS 60.0%
GCGTTGAAGGAGTGAACGGG+AGG + chr3_4:79555871-79555890 None:intergenic 60.0%
GCCAAGGGCCCTAAATGGAG+AGG - chr3_4:79555889-79555908 Msa0525900:exon 60.0%
CTAGGCTTCGTCCCGGGGAT+TGG - chr3_4:79553326-79553345 Msa0525900:intron 65.0%
GGTCCCCTGGTGATCGTGCT+GGG - chr3_4:79555135-79555154 Msa0525900:CDS 65.0%
CGGAACCCAGCACGATCACC+AGG + chr3_4:79555143-79555162 None:intergenic 65.0%
GATCGTGCTGGGTTCCGTCC+TGG - chr3_4:79555146-79555165 Msa0525900:CDS 65.0%
GCACGATCACCAGGGGACCC+AGG + chr3_4:79555134-79555153 None:intergenic 70.0%
GGGTCCCCTGGTGATCGTGC+TGG - chr3_4:79555134-79555153 Msa0525900:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 79550889 79555971 79550889 ID=Msa0525900;Name=Msa0525900
chr3_4 mRNA 79550889 79555971 79550889 ID=Msa0525900-mRNA-1;Parent=Msa0525900;Name=Msa0525900-mRNA-1;_AED=0.23;_eAED=0.23;_QI=72|1|1|1|0.8|0.72|11|302|433
chr3_4 exon 79550889 79551307 79550889 ID=Msa0525900-mRNA-1:exon:23865;Parent=Msa0525900-mRNA-1
chr3_4 exon 79551643 79551735 79551643 ID=Msa0525900-mRNA-1:exon:23864;Parent=Msa0525900-mRNA-1
chr3_4 exon 79552546 79552666 79552546 ID=Msa0525900-mRNA-1:exon:23863;Parent=Msa0525900-mRNA-1
chr3_4 exon 79552956 79553098 79552956 ID=Msa0525900-mRNA-1:exon:23862;Parent=Msa0525900-mRNA-1
chr3_4 exon 79553210 79553291 79553210 ID=Msa0525900-mRNA-1:exon:23861;Parent=Msa0525900-mRNA-1
chr3_4 exon 79553453 79553664 79553453 ID=Msa0525900-mRNA-1:exon:23860;Parent=Msa0525900-mRNA-1
chr3_4 exon 79554825 79554952 79554825 ID=Msa0525900-mRNA-1:exon:23859;Parent=Msa0525900-mRNA-1
chr3_4 exon 79555040 79555219 79555040 ID=Msa0525900-mRNA-1:exon:23858;Parent=Msa0525900-mRNA-1
chr3_4 exon 79555325 79555435 79555325 ID=Msa0525900-mRNA-1:exon:23857;Parent=Msa0525900-mRNA-1
chr3_4 exon 79555698 79555797 79555698 ID=Msa0525900-mRNA-1:exon:23856;Parent=Msa0525900-mRNA-1
chr3_4 exon 79555885 79555971 79555885 ID=Msa0525900-mRNA-1:exon:23855;Parent=Msa0525900-mRNA-1
chr3_4 five_prime_UTR 79555900 79555971 79555900 ID=Msa0525900-mRNA-1:five_prime_utr;Parent=Msa0525900-mRNA-1
chr3_4 CDS 79555885 79555899 79555885 ID=Msa0525900-mRNA-1:cds;Parent=Msa0525900-mRNA-1
chr3_4 CDS 79555698 79555797 79555698 ID=Msa0525900-mRNA-1:cds;Parent=Msa0525900-mRNA-1
chr3_4 CDS 79555325 79555435 79555325 ID=Msa0525900-mRNA-1:cds;Parent=Msa0525900-mRNA-1
chr3_4 CDS 79555040 79555219 79555040 ID=Msa0525900-mRNA-1:cds;Parent=Msa0525900-mRNA-1
chr3_4 CDS 79554825 79554952 79554825 ID=Msa0525900-mRNA-1:cds;Parent=Msa0525900-mRNA-1
chr3_4 CDS 79553453 79553664 79553453 ID=Msa0525900-mRNA-1:cds;Parent=Msa0525900-mRNA-1
chr3_4 CDS 79553210 79553291 79553210 ID=Msa0525900-mRNA-1:cds;Parent=Msa0525900-mRNA-1
chr3_4 CDS 79552956 79553098 79552956 ID=Msa0525900-mRNA-1:cds;Parent=Msa0525900-mRNA-1
chr3_4 CDS 79552546 79552666 79552546 ID=Msa0525900-mRNA-1:cds;Parent=Msa0525900-mRNA-1
chr3_4 CDS 79551643 79551735 79551643 ID=Msa0525900-mRNA-1:cds;Parent=Msa0525900-mRNA-1
chr3_4 CDS 79551191 79551307 79551191 ID=Msa0525900-mRNA-1:cds;Parent=Msa0525900-mRNA-1
chr3_4 three_prime_UTR 79550889 79551190 79550889 ID=Msa0525900-mRNA-1:three_prime_utr;Parent=Msa0525900-mRNA-1
Gene Sequence

>Msa0525900

ATGAGTTATTTCCTGAGTAAACTTCTGCGTTTGAACAGAAGCTCTGCCGTTGGAGCTGTGGGTATCGTTGCTGTTGGTTCAACTCTACTCTGTTCCGATAACCACACTAATTCCAGAACGTTCGTACGTGTGCGGATTCCTTTGCCATTGCAAGATATATCATGGTTGACATTGGCAACCCCGTTTGATTTGTTACGTCCACATTTGTCGTCTTTCGACCAACATGGGATTCTCGCGCTGTCTTCTTATAGAGTTAGCCCTGTTCCTTCTTCGGACATGTCTAAGGAAACTTCTGGGGGTGTTAATGATGAATCAAAGCCATCTAAGGATACTTTTGGTAGAGACACTATTGCAAATGCTGCTGCTAAAGTTGGTCCTGCTGTTGTTAATATTTCGATTCCACAAGATTTCTATGGTTTTGCTACAGGGAAGAGTATTGGCTCTGGAACAATCATTAACAAAGATGGTACAATCTTGACATGTGCCCATGTTGTCGTTGATTTTCATGGCACAAAAGGTTCATCCAAAGGGAAGATTGAAGTCACTTTGCAAGATGGAAGGACATTTGAGGGGAAAGTGGTGAATGCTGACATGCATTCAGATATTGCTGTTGTGAAGATAAATTCTGAAACCCCACTTCCGGAAGCAAAGCTTGGTTCTTCAACTAGGCTTCGTCCCGGGGATTGGGTAATAGCCATGGGTTGTCCGCATTCCCTTCAGAATACTGTCACTGCTGGTATTGTAAGTTGCGTTGACCGTAAAAGCAGTGATTTGGGATTTAGTGGCTCGCCCAGAGAGTATTTACAAACAGATTGTGCAATTAATGTGGGAAATTCTGGAGGGCCACTTGTCAATATGGATGGAGAAATTGTTGGAGTGAACATCATGAAAGTGTTGGCTGCTGATGGGTTGGGTTTTTCCGTACCAATCGACTCTGTGTGTAAAATTATAGAGCATTTCAAGAAAAGTGGGAGAGTGATACGGCCATGGCTTGGACTAAGAATGCTTGATCTAAATGAGATGATTATTGAGCAGCTTAAAAAGAAAGATGCTTCATTCCCTAATGTCAATAAGGGCATTCTTGTACCAATGGTAACTCCTGGGTCCCCTGGTGATCGTGCTGGGTTCCGTCCTGGTGATGTTGTCATTGAATTTGATGGAAAGCCCGTGGAAAGCATGAAGGAGGTTATTGAAATGATGGTGGACAAAGTTGGGGTGCCCATGAAGGTTGTAGTTAAAAGAGCGAATGATAAGTTTGCGACTTTAAGTGTGATTCCGGAGGAATCCAATCTCAGCTTGTAG

Protein sequence

>Msa0525900

MSYFLSKLLRLNRSSAVGAVGIVAVGSTLLCSDNHTNSRTFVRVRIPLPLQDISWLTLATPFDLLRPHLSSFDQHGILALSSYRVSPVPSSDMSKETSGGVNDESKPSKDTFGRDTIANAAAKVGPAVVNISIPQDFYGFATGKSIGSGTIINKDGTILTCAHVVVDFHGTKGSSKGKIEVTLQDGRTFEGKVVNADMHSDIAVVKINSETPLPEAKLGSSTRLRPGDWVIAMGCPHSLQNTVTAGIVSCVDRKSSDLGFSGSPREYLQTDCAINVGNSGGPLVNMDGEIVGVNIMKVLAADGLGFSVPIDSVCKIIEHFKKSGRVIRPWLGLRMLDLNEMIIEQLKKKDASFPNVNKGILVPMVTPGSPGDRAGFRPGDVVIEFDGKPVESMKEVIEMMVDKVGVPMKVVVKRANDKFATLSVIPEESNLSL*