Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0525900 | XP_003626259.1 | 96.767 | 433 | 14 | 0 | 1 | 433 | 1 | 433 | 0.0 | 848 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0525900 | sp|Q3E6S8|DGP14_ARATH | 60.412 | 437 | 154 | 6 | 1 | 430 | 2 | 426 | 6.25e-180 | 511 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0525900 | A2Q336 | 96.767 | 433 | 14 | 0 | 1 | 433 | 1 | 433 | 0.0 | 848 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0428150 | Msa0525900 | 0.832014 | 1.203829e-55 | -8.615850e-47 |
Msa0462500 | Msa0525900 | 0.827297 | 1.691095e-54 | -8.615850e-47 |
Msa0525900 | Msa0806790 | 0.810809 | 9.581228e-51 | -8.615850e-47 |
Msa0525900 | Msa0806800 | 0.801671 | 8.066907e-49 | -8.615850e-47 |
Msa0525900 | Msa0938480 | 0.811779 | 5.901674e-51 | -8.615850e-47 |
Msa0525900 | Msa0945110 | 0.803682 | 3.102359e-49 | -8.615850e-47 |
Msa0525900 | Msa1039370 | 0.889459 | 2.377642e-73 | -8.615850e-47 |
Msa0525900 | Msa1165110 | 0.994072 | 2.360712e-204 | -8.615850e-47 |
Msa0525900 | Msa1373150 | 0.946920 | 1.831914e-105 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0525900 | MtrunA17_Chr7g0272621 | 96.767 | 433 | 14 | 0 | 1 | 433 | 1 | 433 | 0.0 | 848 |
Msa0525900 | MtrunA17_Chr6g0450671 | 30.293 | 307 | 170 | 10 | 128 | 413 | 128 | 411 | 4.00e-32 | 126 |
Msa0525900 | MtrunA17_Chr6g0453121 | 28.571 | 308 | 182 | 10 | 147 | 430 | 165 | 458 | 3.54e-30 | 121 |
Msa0525900 | MtrunA17_Chr2g0285791 | 35.519 | 183 | 108 | 5 | 147 | 320 | 133 | 314 | 2.37e-22 | 97.1 |
Msa0525900 | MtrunA17_Chr5g0426331 | 27.143 | 280 | 159 | 7 | 167 | 415 | 137 | 402 | 3.47e-19 | 89.4 |
Msa0525900 | MtrunA17_Chr5g0426381 | 35.135 | 111 | 71 | 1 | 308 | 417 | 1 | 111 | 2.59e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0525900 | AT5G27660.2 | 61.327 | 437 | 156 | 5 | 1 | 430 | 2 | 432 | 0.0 | 527 |
Msa0525900 | AT5G27660.1 | 61.882 | 425 | 143 | 6 | 13 | 430 | 9 | 421 | 1.70e-180 | 510 |
Msa0525900 | AT3G27925.1 | 31.193 | 327 | 178 | 11 | 128 | 429 | 135 | 439 | 9.02e-34 | 131 |
Msa0525900 | AT3G27925.2 | 31.193 | 327 | 178 | 11 | 128 | 429 | 135 | 439 | 9.02e-34 | 131 |
Msa0525900 | AT5G39830.1 | 29.545 | 308 | 179 | 10 | 147 | 430 | 155 | 448 | 4.45e-31 | 124 |
Msa0525900 | AT5G39830.2 | 28.525 | 305 | 172 | 10 | 147 | 430 | 155 | 434 | 9.24e-27 | 112 |
Msa0525900 | AT4G18370.1 | 36.458 | 192 | 110 | 6 | 147 | 328 | 131 | 320 | 2.07e-21 | 94.7 |
Find 150 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTTGAGATCCTCTCCATTT+AGG | 0.184232 | 3_4:+79550940 | None:intergenic |
CGTTGAAGAGTGTAGAATTT+TGG | 0.246728 | 3_4:-79555914 | Msa0525900:five_prime_UTR |
GTTGAGATCCTCTCCATTTA+GGG | 0.246868 | 3_4:+79550941 | None:intergenic |
TTCATTCCCTAATGTCAATA+AGG | 0.269170 | 3_4:-79552563 | Msa0525900:CDS |
TGTATGGCACAGGGAAATTC+TGG | 0.299439 | 3_4:-79553088 | Msa0525900:intron |
TCCTTCTTCGGACATGTCTA+AGG | 0.309122 | 3_4:-79555160 | Msa0525900:CDS |
ATTGGCTTTGTAGATTTCTA+TGG | 0.309418 | 3_4:-79554943 | Msa0525900:intron |
TGGAGGGCCACTTGTCAATA+TGG | 0.315113 | 3_4:-79553068 | Msa0525900:CDS |
TCAACGCCAAGGGCCCTAAA+TGG | 0.323892 | 3_4:-79550954 | Msa0525900:three_prime_UTR |
CTAGGCTTCGTCCCGGGGAT+TGG | 0.328014 | 3_4:-79553512 | Msa0525900:CDS |
TGACCGTAAAAGCAGTGATT+TGG | 0.333135 | 3_4:-79553263 | Msa0525900:CDS |
TGCGACTTTAAGTGTGATTC+CGG | 0.337225 | 3_4:-79551214 | Msa0525900:CDS |
AGAATGCCCTTATTGACATT+AGG | 0.346180 | 3_4:+79552556 | None:intergenic |
GGGTCCCCTGGTGATCGTGC+TGG | 0.357975 | 3_4:-79551704 | Msa0525900:CDS |
GAATGCCCTTATTGACATTA+GGG | 0.359755 | 3_4:+79552557 | None:intergenic |
ATCTATCATGAGTTATTTCC+TGG | 0.362898 | 3_4:-79555884 | Msa0525900:intron |
AAGCCATCTAAGGATACTTT+TGG | 0.364970 | 3_4:-79555108 | Msa0525900:CDS |
GACCGTAAAAGCAGTGATTT+GGG | 0.371160 | 3_4:-79553262 | Msa0525900:CDS |
GACATGTCTAAGGAAACTTC+TGG | 0.371904 | 3_4:-79555150 | Msa0525900:CDS |
ATCTGTTTGTAAATACTCTC+TGG | 0.378364 | 3_4:+79553225 | None:intergenic |
TGATGAATCAAAGCCATCTA+AGG | 0.379781 | 3_4:-79555118 | Msa0525900:CDS |
AGCAGTGATTTGGGATTTAG+TGG | 0.380979 | 3_4:-79553253 | Msa0525900:CDS |
ATGTGAACAAGTGGTATATT+TGG | 0.386975 | 3_4:-79551101 | Msa0525900:three_prime_UTR |
GATGTTGTCATTGAATTTGA+TGG | 0.389841 | 3_4:-79551668 | Msa0525900:CDS |
AAGGAGTGAACGGGAGGAAG+AGG | 0.389975 | 3_4:+79550976 | None:intergenic |
AGTTAGCCCTGTTCCTTCTT+CGG | 0.392277 | 3_4:-79555172 | Msa0525900:CDS |
TTGAACACAAACCTTCCCTT+TGG | 0.396372 | 3_4:+79554813 | None:intergenic |
AAATGATGGTGGACAAAGTT+GGG | 0.397529 | 3_4:-79551278 | Msa0525900:CDS |
TAGGCTTCGTCCCGGGGATT+GGG | 0.404252 | 3_4:-79553511 | Msa0525900:CDS |
CAAAGCTTGGTTCTTCAACT+AGG | 0.415056 | 3_4:-79553530 | Msa0525900:CDS |
TCCTCTCCATTTAGGGCCCT+TGG | 0.417772 | 3_4:+79550948 | None:intergenic |
CCAAGCTTTGCTTCCGGAAG+TGG | 0.420101 | 3_4:+79553543 | None:intergenic |
AAATTCTGAAACCCCACTTC+CGG | 0.423531 | 3_4:-79553556 | Msa0525900:CDS |
CAAGATGGAAGGACATTTGA+GGG | 0.423591 | 3_4:-79553627 | Msa0525900:CDS |
TTTAGGGCCCTTGGCGTTGA+AGG | 0.425402 | 3_4:+79550957 | None:intergenic |
CTTCAACTAGGCTTCGTCCC+GGG | 0.427401 | 3_4:-79553518 | Msa0525900:CDS |
CGGAACCCAGCACGATCACC+AGG | 0.431496 | 3_4:+79551698 | None:intergenic |
TGCCATTGCAAGATATATCA+TGG | 0.437451 | 3_4:-79555386 | Msa0525900:CDS |
CTACCAAAAGTATCCTTAGA+TGG | 0.439534 | 3_4:+79555105 | None:intergenic |
TCATTCCCTAATGTCAATAA+GGG | 0.444524 | 3_4:-79552562 | Msa0525900:CDS |
GGAATCCAATCTCAGCTTGT+AGG | 0.450834 | 3_4:-79551190 | Msa0525900:exon |
AACTAATGACTAAAGTGAAC+GGG | 0.452413 | 3_4:+79550919 | None:intergenic |
AGTCTCCTACAAGCTGAGAT+TGG | 0.457251 | 3_4:+79551185 | None:intergenic |
GGTCCCCTGGTGATCGTGCT+GGG | 0.461837 | 3_4:-79551703 | Msa0525900:CDS |
ACTGGAATTAGTGTGGTTAT+CGG | 0.462039 | 3_4:+79555696 | None:intergenic |
ACATGTCTAAGGAAACTTCT+GGG | 0.469601 | 3_4:-79555149 | Msa0525900:CDS |
GAAGAACCAAGCTTTGCTTC+CGG | 0.472595 | 3_4:+79553537 | None:intergenic |
GTGGACGTAACAAATCAAAC+GGG | 0.472824 | 3_4:+79555349 | None:intergenic |
TTTGCTACAGGGAAGAGTAT+TGG | 0.475530 | 3_4:-79554919 | Msa0525900:CDS |
GTTGCAGGTTATTGAAATGA+TGG | 0.475950 | 3_4:-79551292 | Msa0525900:intron |
TAGGTAACTCCTGGGTCCCC+TGG | 0.475953 | 3_4:-79551716 | Msa0525900:CDS |
AGTGTTGGCTGCTGATGGGT+TGG | 0.476294 | 3_4:-79553014 | Msa0525900:CDS |
AGGAGTGAACGGGAGGAAGA+GGG | 0.476400 | 3_4:+79550977 | None:intergenic |
TCCTTAGACATGTCCGAAGA+AGG | 0.477491 | 3_4:+79555159 | None:intergenic |
ATAGAGCATTTCAAGAAAAG+TGG | 0.478194 | 3_4:-79552956 | Msa0525900:CDS |
TGTGGACGTAACAAATCAAA+CGG | 0.478244 | 3_4:+79555348 | None:intergenic |
GTGTTGGCTGCTGATGGGTT+GGG | 0.482417 | 3_4:-79553013 | Msa0525900:CDS |
GACATGTCCGAAGAAGGAAC+AGG | 0.489693 | 3_4:+79555165 | None:intergenic |
TACCTCCTTCATGCTTTCCA+CGG | 0.491263 | 3_4:+79551640 | None:intergenic |
CAAGCTTTGCTTCCGGAAGT+GGG | 0.491393 | 3_4:+79553544 | None:intergenic |
AGCTCTGCCGTTGGAGCTGT+GGG | 0.496151 | 3_4:-79555751 | Msa0525900:CDS |
GATCGTGCTGGGTTCCGTCC+TGG | 0.498642 | 3_4:-79551692 | Msa0525900:CDS |
TTGGCGTTGAAGGAGTGAAC+GGG | 0.499034 | 3_4:+79550967 | None:intergenic |
GCAAGATGGAAGGACATTTG+AGG | 0.500220 | 3_4:-79553628 | Msa0525900:CDS |
ATTGAAGTCACTTTGCAAGA+TGG | 0.504105 | 3_4:-79553642 | Msa0525900:CDS |
CGGGGATTGGGTAATAGCCA+TGG | 0.506433 | 3_4:-79553499 | Msa0525900:CDS |
ATCGAAATATTAACAACAGC+AGG | 0.506520 | 3_4:+79555048 | None:intergenic |
CCACTTCCGGAAGCAAAGCT+TGG | 0.510741 | 3_4:-79553543 | Msa0525900:CDS |
AAGGACATTTGAGGGGAAAG+TGG | 0.512120 | 3_4:-79553619 | Msa0525900:CDS |
AGAGTGATACGGCCATGGCT+TGG | 0.514213 | 3_4:-79552643 | Msa0525900:CDS |
GGAACAATCATTAACAAAGA+TGG | 0.515974 | 3_4:-79554892 | Msa0525900:CDS |
ATGAAAGTGTTGGCTGCTGA+TGG | 0.519245 | 3_4:-79553019 | Msa0525900:CDS |
TTCAACTAGGCTTCGTCCCG+GGG | 0.519860 | 3_4:-79553517 | Msa0525900:CDS |
AAGCTCTGCCGTTGGAGCTG+TGG | 0.521174 | 3_4:-79555752 | Msa0525900:CDS |
GCAAATGCTGCTGCTAAAGT+TGG | 0.521599 | 3_4:-79555072 | Msa0525900:CDS |
CGTTCACTCCTTCAACGCCA+AGG | 0.524270 | 3_4:-79550965 | Msa0525900:three_prime_UTR |
GAAATGATGGTGGACAAAGT+TGG | 0.526009 | 3_4:-79551279 | Msa0525900:CDS |
ACCTCCTTCATGCTTTCCAC+GGG | 0.531605 | 3_4:+79551641 | None:intergenic |
GCACAAAAGGTTCATCCAAA+GGG | 0.534147 | 3_4:-79554828 | Msa0525900:CDS |
CATGAAAATCAACGACAACA+TGG | 0.539853 | 3_4:+79554851 | None:intergenic |
TCTTCAACTAGGCTTCGTCC+CGG | 0.539957 | 3_4:-79553519 | Msa0525900:CDS |
TCAGGAGAGTGATACGGCCA+TGG | 0.540162 | 3_4:-79552648 | Msa0525900:intron |
ACAGGGAAGAGTATTGGCTC+TGG | 0.541432 | 3_4:-79554913 | Msa0525900:CDS |
CTGTCACTGCTGGTATTGTA+AGG | 0.545354 | 3_4:-79553452 | Msa0525900:intron |
CATGGCTATTACCCAATCCC+CGG | 0.547015 | 3_4:+79553500 | None:intergenic |
AAGGGAATGCGGACAACCCA+TGG | 0.551296 | 3_4:+79553482 | None:intergenic |
GGCACAAAAGGTTCATCCAA+AGG | 0.554675 | 3_4:-79554829 | Msa0525900:CDS |
TAAGGGCATTCTTGTACCAA+TGG | 0.554993 | 3_4:-79552545 | Msa0525900:intron |
TTGAACAGAAGCTCTGCCGT+TGG | 0.555512 | 3_4:-79555760 | Msa0525900:CDS |
GGGCCACTTGTCAATATGGA+TGG | 0.558327 | 3_4:-79553064 | Msa0525900:CDS |
GTTCACTCCTTCAACGCCAA+GGG | 0.561597 | 3_4:-79550964 | Msa0525900:three_prime_UTR |
CTTCAGAATACTGTCACTGC+TGG | 0.562372 | 3_4:-79553462 | Msa0525900:CDS |
TAGAGCATTTCAAGAAAAGT+GGG | 0.563537 | 3_4:-79552955 | Msa0525900:intron |
ACACACAGAGTCGATTGGTA+CGG | 0.565045 | 3_4:+79552985 | None:intergenic |
AGATATATCATGGTTGACAT+TGG | 0.565755 | 3_4:-79555376 | Msa0525900:CDS |
AACCATGATATATCTTGCAA+TGG | 0.566757 | 3_4:+79555384 | None:intergenic |
GATATATCTTGCAATGGCAA+AGG | 0.570631 | 3_4:+79555390 | None:intergenic |
CAGCAGTGACAGTATTCTGA+AGG | 0.571751 | 3_4:+79553463 | None:intergenic |
CAAGTTCTAATGTGAACAAG+TGG | 0.573289 | 3_4:-79551110 | Msa0525900:three_prime_UTR |
TAGGAACGTTCGTACGTGTG+CGG | 0.573882 | 3_4:-79555416 | Msa0525900:CDS |
AATATGGATGGAGAAATTGT+TGG | 0.576439 | 3_4:-79553052 | Msa0525900:CDS |
TCTGTTTGTAAATACTCTCT+GGG | 0.577942 | 3_4:+79553226 | None:intergenic |
AACGATACCCACAGCTCCAA+CGG | 0.578717 | 3_4:+79555744 | None:intergenic |
GCTGTGGGTATCGTTGCTGT+TGG | 0.578767 | 3_4:-79555736 | Msa0525900:CDS |
AAGCTGAGATTGGATTCCTC+CGG | 0.580230 | 3_4:+79551195 | None:intergenic |
CACCGAAAAGGTTGTGACAG+TGG | 0.581944 | 3_4:-79555952 | Msa0525900:five_prime_UTR |
AAGTCACTTTGCAAGATGGA+AGG | 0.582092 | 3_4:-79553638 | Msa0525900:CDS |
CTTGGCGTTGAAGGAGTGAA+CGG | 0.585542 | 3_4:+79550966 | None:intergenic |
AAACTAATGACTAAAGTGAA+CGG | 0.587325 | 3_4:+79550918 | None:intergenic |
GGGGATTGGGTAATAGCCAT+GGG | 0.587526 | 3_4:-79553498 | Msa0525900:CDS |
ATGAAAATCAACGACAACAT+GGG | 0.587711 | 3_4:+79554852 | None:intergenic |
AAAAGGTTCATCCAAAGGGA+AGG | 0.590674 | 3_4:-79554824 | Msa0525900:intron |
ATGGCTATTACCCAATCCCC+GGG | 0.595774 | 3_4:+79553501 | None:intergenic |
GGTCAAGTTGGTAGAGCCAG+AGG | 0.599131 | 3_4:+79551054 | None:intergenic |
TGAAAGTGTTGGCTGCTGAT+GGG | 0.600081 | 3_4:-79553018 | Msa0525900:CDS |
GAACCCAGCACGATCACCAG+GGG | 0.600193 | 3_4:+79551700 | None:intergenic |
GCACGATCACCAGGGGACCC+AGG | 0.601429 | 3_4:+79551707 | None:intergenic |
ATTGCTCACTGGAATTAGTG+TGG | 0.602326 | 3_4:+79555689 | None:intergenic |
TCTCCATCCATATTGACAAG+TGG | 0.603386 | 3_4:+79553061 | None:intergenic |
CAAAGTTGGGGTGCCCATGA+AGG | 0.604534 | 3_4:-79551265 | Msa0525900:CDS |
AACAGATTGTGCAATTAATG+TGG | 0.605597 | 3_4:-79553209 | Msa0525900:intron |
CATGTCTAAGGAAACTTCTG+GGG | 0.608468 | 3_4:-79555148 | Msa0525900:CDS |
TGAATTTGATGGAAAGCCCG+TGG | 0.609844 | 3_4:-79551657 | Msa0525900:CDS |
TGGTCGAAAGACGACAAATG+TGG | 0.613228 | 3_4:+79555330 | None:intergenic |
AAAGCCCGTGGAAAGCATGA+AGG | 0.616163 | 3_4:-79551645 | Msa0525900:CDS |
AAGCTTTGCTTCCGGAAGTG+GGG | 0.621714 | 3_4:+79553545 | None:intergenic |
TTGTCGTCTTTCGACCAACA+TGG | 0.625198 | 3_4:-79555324 | Msa0525900:intron |
AATTCAATGACAACATCACC+AGG | 0.627515 | 3_4:+79551674 | None:intergenic |
AGCATTCTTAGTCCAAGCCA+TGG | 0.630955 | 3_4:+79552631 | None:intergenic |
TTGATGGTGTACAACAAAGC+TGG | 0.638889 | 3_4:+79551014 | None:intergenic |
AGCAGTGACAGTATTCTGAA+GGG | 0.641778 | 3_4:+79553464 | None:intergenic |
GTTAATATTTCGATTCCACA+AGG | 0.645580 | 3_4:-79555039 | Msa0525900:intron |
GCCAAGGGCCCTAAATGGAG+AGG | 0.645596 | 3_4:-79550949 | Msa0525900:three_prime_UTR |
AGAAAGAGGACAAACCATGT+TGG | 0.646314 | 3_4:+79555310 | None:intergenic |
GGAACCCAGCACGATCACCA+GGG | 0.647337 | 3_4:+79551699 | None:intergenic |
GACTTTAAGTGTGATTCCGG+AGG | 0.648706 | 3_4:-79551211 | Msa0525900:CDS |
ACAGTATTCTGAAGGGAATG+CGG | 0.654266 | 3_4:+79553471 | None:intergenic |
ATGGCACAGGGAAATTCTGG+AGG | 0.659592 | 3_4:-79553085 | Msa0525900:intron |
CAATGACAACATCACCAGGA+CGG | 0.663393 | 3_4:+79551678 | None:intergenic |
GCCCGTGGAAAGCATGAAGG+AGG | 0.665398 | 3_4:-79551642 | Msa0525900:intron |
AACTTGTCATCAATGAAACA+AGG | 0.669183 | 3_4:+79551127 | None:intergenic |
GCAGGTTATTGAAATGATGG+TGG | 0.673889 | 3_4:-79551289 | Msa0525900:intron |
AGTGAACATCATGAAAGTGT+TGG | 0.676552 | 3_4:-79553029 | Msa0525900:CDS |
GCGTTGAAGGAGTGAACGGG+AGG | 0.677613 | 3_4:+79550970 | None:intergenic |
ACATGTCCGAAGAAGGAACA+GGG | 0.682454 | 3_4:+79555166 | None:intergenic |
TGGCACAGGGAAATTCTGGA+GGG | 0.686679 | 3_4:-79553084 | Msa0525900:intron |
AAGATGGAAGGACATTTGAG+GGG | 0.693003 | 3_4:-79553626 | Msa0525900:CDS |
AATGATGGTGGACAAAGTTG+GGG | 0.709009 | 3_4:-79551277 | Msa0525900:CDS |
ATGTCTAAGGAAACTTCTGG+GGG | 0.710738 | 3_4:-79555147 | Msa0525900:CDS |
TGGACGTAACAAATCAAACG+GGG | 0.745894 | 3_4:+79555350 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTAAAGTAAAAGAAAAT+AGG | + | chr3_4:79553459-79553478 | None:intergenic | 10.0% |
!!! | TTTTTTTATAACAATAACAA+CGG | - | chr3_4:79554859-79554878 | Msa0525900:CDS | 10.0% |
!! | TAATCTTGAAATAAAGTTAA+TGG | - | chr3_4:79551198-79551217 | Msa0525900:CDS | 15.0% |
!!! | TATTTTCAGAATAATTTTCT+AGG | + | chr3_4:79554628-79554647 | None:intergenic | 15.0% |
!! | TAAGATAAAATAAAATGATC+TGG | - | chr3_4:79555285-79555304 | Msa0525900:intron | 15.0% |
!! | AAGATAAAATAAAATGATCT+GGG | - | chr3_4:79555286-79555305 | Msa0525900:intron | 15.0% |
!! | AATAATCAATTCATCTAACA+TGG | - | chr3_4:79551390-79551409 | Msa0525900:intron | 20.0% |
!!! | ATTTAGAACTGAAAATTTGT+AGG | - | chr3_4:79551619-79551638 | Msa0525900:intron | 20.0% |
!!! | TTTAGAACTGAAAATTTGTA+GGG | - | chr3_4:79551620-79551639 | Msa0525900:intron | 20.0% |
!! | AAGAAATATATCTTGAATTG+TGG | + | chr3_4:79552572-79552591 | None:intergenic | 20.0% |
!! | TGTTAAATCTAACATTGAAA+TGG | + | chr3_4:79553485-79553504 | None:intergenic | 20.0% |
!!! | CTGATTTTTTAAATGTCTTT+TGG | - | chr3_4:79553509-79553528 | Msa0525900:CDS | 20.0% |
!!! | TTCATGTATTGTATGATTTT+TGG | - | chr3_4:79553541-79553560 | Msa0525900:CDS | 20.0% |
!! | GATCATAATATATCCATAAA+AGG | + | chr3_4:79554072-79554091 | None:intergenic | 20.0% |
!!! | AGTAAACTTTTTTTCTTTTC+AGG | - | chr3_4:79554172-79554191 | Msa0525900:intron | 20.0% |
!! | AAAATTACACAAAACATAAG+CGG | + | chr3_4:79554939-79554958 | None:intergenic | 20.0% |
!!! | AAATTTAAACGTTTTTGACT+AGG | - | chr3_4:79555103-79555122 | Msa0525900:CDS | 20.0% |
!! | AGATAAAATAAAATGATCTG+GGG | - | chr3_4:79555287-79555306 | Msa0525900:intron | 20.0% |
!! | CAAACTTATACTAATCTTTA+GGG | - | chr3_4:79555356-79555375 | Msa0525900:CDS | 20.0% |
! | AGAAAGAATTAACAATTACC+AGG | + | chr3_4:79550975-79550994 | None:intergenic | 25.0% |
! | GATGTATTTGTGAAAAACTA+AGG | + | chr3_4:79552457-79552476 | None:intergenic | 25.0% |
! | TGGTATATACTAACTAGTTA+TGG | + | chr3_4:79552552-79552571 | None:intergenic | 25.0% |
! | AATTCAATTGTTAGAGTGAT+AGG | + | chr3_4:79552690-79552709 | None:intergenic | 25.0% |
! | TATTAAAAGTGAATGTGGAA+AGG | + | chr3_4:79552722-79552741 | None:intergenic | 25.0% |
!!! | TCCACATTCACTTTTAATAA+TGG | - | chr3_4:79552723-79552742 | Msa0525900:intron | 25.0% |
!!! | CCACATTCACTTTTAATAAT+GGG | - | chr3_4:79552724-79552743 | Msa0525900:intron | 25.0% |
! | AGGATGTTAAGAAAGATAAA+GGG | + | chr3_4:79552788-79552807 | None:intergenic | 25.0% |
! | TCTTGATATTCTTATGTTGT+AGG | - | chr3_4:79552952-79552971 | Msa0525900:intron | 25.0% |
!! | TTGAGTCTTAAATGATTTTC+AGG | + | chr3_4:79553061-79553080 | None:intergenic | 25.0% |
! | AAAGAAAATAGGTTAAAACC+AGG | + | chr3_4:79553448-79553467 | None:intergenic | 25.0% |
! | TTCAGATTGTCACATATAAA+CGG | + | chr3_4:79553993-79554012 | None:intergenic | 25.0% |
!! | CTTACAATTTTCACCTTTTA+TGG | - | chr3_4:79554056-79554075 | Msa0525900:intron | 25.0% |
! | GTCAATCAAAATTGTTTATG+CGG | + | chr3_4:79554094-79554113 | None:intergenic | 25.0% |
!! | TTGATTGACATACTTTTATG+TGG | - | chr3_4:79554105-79554124 | Msa0525900:intron | 25.0% |
! | CATCTAAAGATCGATTAATT+GGG | + | chr3_4:79554325-79554344 | None:intergenic | 25.0% |
!! | ATACTTGTTACTATCATACT+TGG | - | chr3_4:79554570-79554589 | Msa0525900:intron | 25.0% |
! | TTTGATCTATCAATAAGATG+AGG | + | chr3_4:79554653-79554672 | None:intergenic | 25.0% |
! | ATTACAAATCAAAGAGAAGA+TGG | - | chr3_4:79554747-79554766 | Msa0525900:intron | 25.0% |
! | GATAAAATAAAATGATCTGG+GGG | - | chr3_4:79555288-79555307 | Msa0525900:intron | 25.0% |
! | CCTAAAGATTAGTATAAGTT+TGG | + | chr3_4:79555358-79555377 | None:intergenic | 25.0% |
! | CCAAACTTATACTAATCTTT+AGG | - | chr3_4:79555355-79555374 | Msa0525900:CDS | 25.0% |
! | CATAATGAAGAATAATCTCA+CGG | + | chr3_4:79555480-79555499 | None:intergenic | 25.0% |
! | AAACTAATGACTAAAGTGAA+CGG | + | chr3_4:79555923-79555942 | None:intergenic | 25.0% |
! | ATCTATCATGAGTTATTTCC+TGG | - | chr3_4:79550954-79550973 | Msa0525900:three_prime_UTR | 30.0% |
! | TTGAAGAATCTCTCTGATTT+TGG | - | chr3_4:79551021-79551040 | Msa0525900:three_prime_UTR | 30.0% |
! | TGAAGAATCTCTCTGATTTT+GGG | - | chr3_4:79551022-79551041 | Msa0525900:three_prime_UTR | 30.0% |
AGATTTAGTTAATTGCTCAC+TGG | + | chr3_4:79551163-79551182 | None:intergenic | 30.0% | |
! | TTAATGGCATGCTTTTCAAT+TGG | - | chr3_4:79551214-79551233 | Msa0525900:CDS | 30.0% |
AATATTGACGATGCATACAA+AGG | - | chr3_4:79551354-79551373 | Msa0525900:intron | 30.0% | |
TCTAACATGGCTTCAAATTT+AGG | - | chr3_4:79551403-79551422 | Msa0525900:intron | 30.0% | |
AACCATGATATATCTTGCAA+TGG | + | chr3_4:79551457-79551476 | None:intergenic | 30.0% | |
AGATATATCATGGTTGACAT+TGG | - | chr3_4:79551462-79551481 | Msa0525900:intron | 30.0% | |
TAAAAGTTCAAACCAGAAAG+AGG | + | chr3_4:79551545-79551564 | None:intergenic | 30.0% | |
ATCGAAATATTAACAACAGC+AGG | + | chr3_4:79551793-79551812 | None:intergenic | 30.0% | |
GTTAATATTTCGATTCCACA+AGG | - | chr3_4:79551799-79551818 | Msa0525900:intron | 30.0% | |
AACGATTCATTCAGATGAAA+AGG | + | chr3_4:79551833-79551852 | None:intergenic | 30.0% | |
!! | ATTGGCTTTGTAGATTTCTA+TGG | - | chr3_4:79551895-79551914 | Msa0525900:intron | 30.0% |
!! | ATTTCTATGGTTTTGCTACA+GGG | - | chr3_4:79551908-79551927 | Msa0525900:intron | 30.0% |
GGAACAATCATTAACAAAGA+TGG | - | chr3_4:79551946-79551965 | Msa0525900:intron | 30.0% | |
ATGAAAATCAACGACAACAT+GGG | + | chr3_4:79551989-79552008 | None:intergenic | 30.0% | |
TTCAAGACAGTGTACATATT+TGG | + | chr3_4:79552067-79552086 | None:intergenic | 30.0% | |
ATATAACTGTAGCTTGATAC+TGG | + | chr3_4:79552201-79552220 | None:intergenic | 30.0% | |
CTACATGAGTTAGAATAAGA+CGG | - | chr3_4:79552524-79552543 | Msa0525900:intron | 30.0% | |
GAAAGAAAGTTCAACTGTTA+GGG | + | chr3_4:79552649-79552668 | None:intergenic | 30.0% | |
TGAAAGAAAGTTCAACTGTT+AGG | + | chr3_4:79552650-79552669 | None:intergenic | 30.0% | |
CCCATTATTAAAAGTGAATG+TGG | + | chr3_4:79552727-79552746 | None:intergenic | 30.0% | |
CAAGATTAGAGAGAAAATTG+TGG | + | chr3_4:79552755-79552774 | None:intergenic | 30.0% | |
GAGGATGTTAAGAAAGATAA+AGG | + | chr3_4:79552789-79552808 | None:intergenic | 30.0% | |
ACTGTAATGAGCTTATGTAT+GGG | + | chr3_4:79552842-79552861 | None:intergenic | 30.0% | |
TACTGTAATGAGCTTATGTA+TGG | + | chr3_4:79552843-79552862 | None:intergenic | 30.0% | |
ATGATAGTTTATCATGCTGT+AGG | - | chr3_4:79552866-79552885 | Msa0525900:intron | 30.0% | |
ATATCAAGAACCAATTGTTC+TGG | + | chr3_4:79552941-79552960 | None:intergenic | 30.0% | |
ATATTGAGAACCAATTGATC+CGG | + | chr3_4:79552999-79553018 | None:intergenic | 30.0% | |
TCTGTTTGTAAATACTCTCT+GGG | + | chr3_4:79553615-79553634 | None:intergenic | 30.0% | |
ATCTGTTTGTAAATACTCTC+TGG | + | chr3_4:79553616-79553635 | None:intergenic | 30.0% | |
AACAGATTGTGCAATTAATG+TGG | - | chr3_4:79553629-79553648 | Msa0525900:CDS | 30.0% | |
ATAAACTACCCAAGTAGATA+TGG | - | chr3_4:79553678-79553697 | Msa0525900:intron | 30.0% | |
TCCATATTCCATATCTACTT+GGG | + | chr3_4:79553689-79553708 | None:intergenic | 30.0% | |
ATCCATATTCCATATCTACT+TGG | + | chr3_4:79553690-79553709 | None:intergenic | 30.0% | |
GTAGATATGGAATATGGATT+TGG | - | chr3_4:79553691-79553710 | Msa0525900:intron | 30.0% | |
AATATGGATGGAGAAATTGT+TGG | - | chr3_4:79553786-79553805 | Msa0525900:intron | 30.0% | |
! | ATAGAGCATTTCAAGAAAAG+TGG | - | chr3_4:79553882-79553901 | Msa0525900:intron | 30.0% |
! | TAGAGCATTTCAAGAAAAGT+GGG | - | chr3_4:79553883-79553902 | Msa0525900:intron | 30.0% |
TCCAAGCAGAAAGTTTAATT+AGG | - | chr3_4:79554027-79554046 | Msa0525900:intron | 30.0% | |
TGGTTAATACTTGAGTAGTT+AGG | - | chr3_4:79554125-79554144 | Msa0525900:intron | 30.0% | |
TTCATTCCCTAATGTCAATA+AGG | - | chr3_4:79554275-79554294 | Msa0525900:intron | 30.0% | |
TCATTCCCTAATGTCAATAA+GGG | - | chr3_4:79554276-79554295 | Msa0525900:intron | 30.0% | |
ATTAATTGGGAACATACCAT+TGG | + | chr3_4:79554312-79554331 | None:intergenic | 30.0% | |
GCATCTAAAGATCGATTAAT+TGG | + | chr3_4:79554326-79554345 | None:intergenic | 30.0% | |
! | TTTTCAGAATCTAGATTCAC+AGG | - | chr3_4:79554358-79554377 | Msa0525900:intron | 30.0% |
TTCAAAGTTGTTTGCAAAGT+TGG | - | chr3_4:79554428-79554447 | Msa0525900:intron | 30.0% | |
TTATTATGTTAGTGAAGCCA+TGG | - | chr3_4:79554530-79554549 | Msa0525900:intron | 30.0% | |
TATTATGTTAGTGAAGCCAT+GGG | - | chr3_4:79554531-79554550 | Msa0525900:intron | 30.0% | |
TGTTACTATCATACTTGGAT+AGG | - | chr3_4:79554575-79554594 | Msa0525900:intron | 30.0% | |
GTTACTATCATACTTGGATA+GGG | - | chr3_4:79554576-79554595 | Msa0525900:intron | 30.0% | |
CTAGGATTCTCACTTTAATA+GGG | + | chr3_4:79554610-79554629 | None:intergenic | 30.0% | |
! | TCTAGGATTCTCACTTTAAT+AGG | + | chr3_4:79554611-79554630 | None:intergenic | 30.0% |
AAGTGAACACAAAAACAAAG+AGG | - | chr3_4:79554671-79554690 | Msa0525900:intron | 30.0% | |
CGTAACTATCACAATTAGAT+AGG | + | chr3_4:79554825-79554844 | None:intergenic | 30.0% | |
AATGTTGTCTAATCAGAAAG+AGG | + | chr3_4:79554895-79554914 | None:intergenic | 30.0% | |
GAAATAATGTGTTTGTCACA+AGG | - | chr3_4:79555080-79555099 | Msa0525900:CDS | 30.0% | |
GATGTTGTCATTGAATTTGA+TGG | - | chr3_4:79555170-79555189 | Msa0525900:CDS | 30.0% | |
!!! | TCGATTTTTTTTACTGTCTG+TGG | + | chr3_4:79555457-79555476 | None:intergenic | 30.0% |
CATAGATGTAAAATTGTTGC+AGG | - | chr3_4:79555531-79555550 | Msa0525900:intron | 30.0% | |
!! | CTTTTAACTACAACCTTCAT+GGG | + | chr3_4:79555589-79555608 | None:intergenic | 30.0% |
!! | TCTTTTAACTACAACCTTCA+TGG | + | chr3_4:79555590-79555609 | None:intergenic | 30.0% |
AACTTGTCATCAATGAAACA+AGG | + | chr3_4:79555714-79555733 | None:intergenic | 30.0% | |
ATGTGAACAAGTGGTATATT+TGG | - | chr3_4:79555737-79555756 | Msa0525900:CDS | 30.0% | |
!!! | CCTTTATTTTTTGGTCAAGT+TGG | + | chr3_4:79555799-79555818 | None:intergenic | 30.0% |
CCAACTTGACCAAAAAATAA+AGG | - | chr3_4:79555796-79555815 | Msa0525900:intron | 30.0% | |
!!! | CTGGTAGAACCTTTATTTTT+TGG | + | chr3_4:79555808-79555827 | None:intergenic | 30.0% |
! | GGAGAAAAATTTAGTGTTGA+TGG | + | chr3_4:79555843-79555862 | None:intergenic | 30.0% |
AACTAATGACTAAAGTGAAC+GGG | + | chr3_4:79555922-79555941 | None:intergenic | 30.0% | |
!! | CGTTGAAGAGTGTAGAATTT+TGG | - | chr3_4:79550924-79550943 | Msa0525900:three_prime_UTR | 35.0% |
! | GAAGAATCTCTCTGATTTTG+GGG | - | chr3_4:79551023-79551042 | Msa0525900:three_prime_UTR | 35.0% |
! | AAGAATCTCTCTGATTTTGG+GGG | - | chr3_4:79551024-79551043 | Msa0525900:three_prime_UTR | 35.0% |
ACTGGAATTAGTGTGGTTAT+CGG | + | chr3_4:79551145-79551164 | None:intergenic | 35.0% | |
GATATATCTTGCAATGGCAA+AGG | + | chr3_4:79551451-79551470 | None:intergenic | 35.0% | |
TGCCATTGCAAGATATATCA+TGG | - | chr3_4:79551452-79551471 | Msa0525900:intron | 35.0% | |
TGTGGACGTAACAAATCAAA+CGG | + | chr3_4:79551493-79551512 | None:intergenic | 35.0% | |
CACATACATCTAAACATGCA+TGG | + | chr3_4:79551595-79551614 | None:intergenic | 35.0% | |
ACATGTCTAAGGAAACTTCT+GGG | - | chr3_4:79551689-79551708 | Msa0525900:CDS | 35.0% | |
TGATGAATCAAAGCCATCTA+AGG | - | chr3_4:79551720-79551739 | Msa0525900:intron | 35.0% | |
! | AAGCCATCTAAGGATACTTT+TGG | - | chr3_4:79551730-79551749 | Msa0525900:intron | 35.0% |
!! | CTACCAAAAGTATCCTTAGA+TGG | + | chr3_4:79551736-79551755 | None:intergenic | 35.0% |
GAAAAGGTAGAAAAACCTTG+TGG | + | chr3_4:79551817-79551836 | None:intergenic | 35.0% | |
!!! | CTCTTTTGAGATTATGCTGA+TGG | - | chr3_4:79551864-79551883 | Msa0525900:intron | 35.0% |
TTGAGATTATGCTGATGGTT+TGG | - | chr3_4:79551869-79551888 | Msa0525900:intron | 35.0% | |
!! | GATTTCTATGGTTTTGCTAC+AGG | - | chr3_4:79551907-79551926 | Msa0525900:intron | 35.0% |
CATGAAAATCAACGACAACA+TGG | + | chr3_4:79551990-79552009 | None:intergenic | 35.0% | |
!!! | CATGTTGTCGTTGATTTTCA+TGG | - | chr3_4:79551988-79552007 | Msa0525900:intron | 35.0% |
!! | GTTGATTTTCATGGCACAAA+AGG | - | chr3_4:79551997-79552016 | Msa0525900:intron | 35.0% |
GAAGGTTTGTGTTCAAGAAA+GGG | - | chr3_4:79552032-79552051 | Msa0525900:intron | 35.0% | |
AGTTCTCTGTGATGTAAATG+TGG | - | chr3_4:79552118-79552137 | Msa0525900:intron | 35.0% | |
! | TGCAAACGAAACATGCTTTT+GGG | + | chr3_4:79552167-79552186 | None:intergenic | 35.0% |
! | ATGCAAACGAAACATGCTTT+TGG | + | chr3_4:79552168-79552187 | None:intergenic | 35.0% |
CTTTGTATGACTCAAAGCTA+GGG | - | chr3_4:79552277-79552296 | Msa0525900:intron | 35.0% | |
GTACTTTCTGAGTCATGATT+TGG | - | chr3_4:79552326-79552345 | Msa0525900:intron | 35.0% | |
TGATCCATTCCCAACAAAAT+AGG | - | chr3_4:79552357-79552376 | Msa0525900:intron | 35.0% | |
GATCCATTCCCAACAAAATA+GGG | - | chr3_4:79552358-79552377 | Msa0525900:intron | 35.0% | |
! | AAGCAATGCCCTATTTTGTT+GGG | + | chr3_4:79552369-79552388 | None:intergenic | 35.0% |
! | TAAGCAATGCCCTATTTTGT+TGG | + | chr3_4:79552370-79552389 | None:intergenic | 35.0% |
! | TCGTTTTCATTCAGTTCTGT+AGG | + | chr3_4:79552412-79552431 | None:intergenic | 35.0% |
ACTGTAACAACCAAACCTTT+AGG | - | chr3_4:79552492-79552511 | Msa0525900:intron | 35.0% | |
AGTTCAACTGTTAGGGTAAA+AGG | + | chr3_4:79552642-79552661 | None:intergenic | 35.0% | |
AAAAGTGAATGTGGAAAGGA+AGG | + | chr3_4:79552718-79552737 | None:intergenic | 35.0% | |
AACAGCAAAAAGGCAAAATG+AGG | + | chr3_4:79552808-79552827 | None:intergenic | 35.0% | |
CTGAAAACTCAACAGCAAAA+AGG | + | chr3_4:79552818-79552837 | None:intergenic | 35.0% | |
GCTAAATGAGCTACTATACA+AGG | + | chr3_4:79552892-79552911 | None:intergenic | 35.0% | |
ATAGTAGCTCATTTAGCTGT+AGG | - | chr3_4:79552895-79552914 | Msa0525900:intron | 35.0% | |
! | ATTGAAGTCACTTTGCAAGA+TGG | - | chr3_4:79553196-79553215 | Msa0525900:intron | 35.0% |
!! | ATCCCAAATCACTGCTTTTA+CGG | + | chr3_4:79553581-79553600 | None:intergenic | 35.0% |
ATCTACTTGGGTAGTTTATG+CGG | + | chr3_4:79553677-79553696 | None:intergenic | 35.0% | |
ACCCAAGTAGATATGGAATA+TGG | - | chr3_4:79553685-79553704 | Msa0525900:intron | 35.0% | |
TTGCATGTTATCTGCTTGTA+TGG | - | chr3_4:79553734-79553753 | Msa0525900:intron | 35.0% | |
! | AGTGAACATCATGAAAGTGT+TGG | - | chr3_4:79553809-79553828 | Msa0525900:intron | 35.0% |
! | ATTTTACACACAGAGTCGAT+TGG | + | chr3_4:79553861-79553880 | None:intergenic | 35.0% |
AAGAAAAGTGGGTATGTTTC+TGG | - | chr3_4:79553894-79553913 | Msa0525900:intron | 35.0% | |
GCCTAATTAAACTTTCTGCT+TGG | + | chr3_4:79554031-79554050 | None:intergenic | 35.0% | |
!! | TTCTTTTCAGGAGAGTGATA+CGG | - | chr3_4:79554184-79554203 | Msa0525900:intron | 35.0% |
GAATGCCCTTATTGACATTA+GGG | + | chr3_4:79554284-79554303 | None:intergenic | 35.0% | |
AGAATGCCCTTATTGACATT+AGG | + | chr3_4:79554285-79554304 | None:intergenic | 35.0% | |
!! | TGCTTTCTTTTGCTATGCTT+TGG | - | chr3_4:79554490-79554509 | Msa0525900:intron | 35.0% |
TAATCAGAAAGAGGAGTAAG+GGG | + | chr3_4:79554886-79554905 | None:intergenic | 35.0% | |
CTAATCAGAAAGAGGAGTAA+GGG | + | chr3_4:79554887-79554906 | None:intergenic | 35.0% | |
TCTAATCAGAAAGAGGAGTA+AGG | + | chr3_4:79554888-79554907 | None:intergenic | 35.0% | |
TACACAAAACATAAGCGGAA+TGG | + | chr3_4:79554934-79554953 | None:intergenic | 35.0% | |
GAGCAACACAATGCATATTA+TGG | + | chr3_4:79555033-79555052 | None:intergenic | 35.0% | |
!! | TTTTTGACTAGGTAACTCCT+GGG | - | chr3_4:79555114-79555133 | Msa0525900:CDS | 35.0% |
AATTCAATGACAACATCACC+AGG | + | chr3_4:79555167-79555186 | None:intergenic | 35.0% | |
GTTGCAGGTTATTGAAATGA+TGG | - | chr3_4:79555546-79555565 | Msa0525900:intron | 35.0% | |
!! | AAATGATGGTGGACAAAGTT+GGG | - | chr3_4:79555560-79555579 | Msa0525900:intron | 35.0% |
! | CAAGTTCTAATGTGAACAAG+TGG | - | chr3_4:79555728-79555747 | Msa0525900:CDS | 35.0% |
!!! | GCACAAGTTTTTTTAACCTC+TGG | - | chr3_4:79555768-79555787 | Msa0525900:CDS | 35.0% |
ATTGCTCACTGGAATTAGTG+TGG | + | chr3_4:79551152-79551171 | None:intergenic | 40.0% | |
TGGACGTAACAAATCAAACG+GGG | + | chr3_4:79551491-79551510 | None:intergenic | 40.0% | |
GTGGACGTAACAAATCAAAC+GGG | + | chr3_4:79551492-79551511 | None:intergenic | 40.0% | |
AGAAAGAGGACAAACCATGT+TGG | + | chr3_4:79551531-79551550 | None:intergenic | 40.0% | |
! | AACATGGTTTGTCCTCTTTC+TGG | - | chr3_4:79551530-79551549 | Msa0525900:intron | 40.0% |
GACATGTCTAAGGAAACTTC+TGG | - | chr3_4:79551688-79551707 | Msa0525900:CDS | 40.0% | |
CATGTCTAAGGAAACTTCTG+GGG | - | chr3_4:79551690-79551709 | Msa0525900:CDS | 40.0% | |
ATGTCTAAGGAAACTTCTGG+GGG | - | chr3_4:79551691-79551710 | Msa0525900:CDS | 40.0% | |
! | ATGCTGATGGTTTGGAGTAT+TGG | - | chr3_4:79551877-79551896 | Msa0525900:intron | 40.0% |
! | TTTGCTACAGGGAAGAGTAT+TGG | - | chr3_4:79551919-79551938 | Msa0525900:intron | 40.0% |
GCACAAAAGGTTCATCCAAA+GGG | - | chr3_4:79552010-79552029 | Msa0525900:intron | 40.0% | |
AAAAGGTTCATCCAAAGGGA+AGG | - | chr3_4:79552014-79552033 | Msa0525900:intron | 40.0% | |
TTGAACACAAACCTTCCCTT+TGG | + | chr3_4:79552028-79552047 | None:intergenic | 40.0% | |
GGAAGGTTTGTGTTCAAGAA+AGG | - | chr3_4:79552031-79552050 | Msa0525900:intron | 40.0% | |
! | ATGTGGTAGAAGAGTACAGT+TGG | - | chr3_4:79552135-79552154 | Msa0525900:intron | 40.0% |
GCTTTGTATGACTCAAAGCT+AGG | - | chr3_4:79552276-79552295 | Msa0525900:intron | 40.0% | |
! | ATGCCCTATTTTGTTGGGAA+TGG | + | chr3_4:79552364-79552383 | None:intergenic | 40.0% |
AACGACGATTCTGTGAATTC+TGG | - | chr3_4:79552427-79552446 | Msa0525900:intron | 40.0% | |
AACAACCAAACCTTTAGGTG+AGG | - | chr3_4:79552497-79552516 | Msa0525900:intron | 40.0% | |
ATGTAGTTGACCTCACCTAA+AGG | + | chr3_4:79552510-79552529 | None:intergenic | 40.0% | |
ATCTAAATCCCTGCTAACGT+TGG | - | chr3_4:79552594-79552613 | Msa0525900:CDS | 40.0% | |
!! | TTGTATAGTAGCTTGCTTGC+CGG | - | chr3_4:79552977-79552996 | Msa0525900:CDS | 40.0% |
! | AAGTCACTTTGCAAGATGGA+AGG | - | chr3_4:79553200-79553219 | Msa0525900:intron | 40.0% |
CAAGATGGAAGGACATTTGA+GGG | - | chr3_4:79553211-79553230 | Msa0525900:CDS | 40.0% | |
AAGATGGAAGGACATTTGAG+GGG | - | chr3_4:79553212-79553231 | Msa0525900:CDS | 40.0% | |
!! | AAATTCTGAAACCCCACTTC+CGG | - | chr3_4:79553282-79553301 | Msa0525900:intron | 40.0% |
! | CAAAGCTTGGTTCTTCAACT+AGG | - | chr3_4:79553308-79553327 | Msa0525900:intron | 40.0% |
! | ACAGTATTCTGAAGGGAATG+CGG | + | chr3_4:79553370-79553389 | None:intergenic | 40.0% |
AGCAGTGACAGTATTCTGAA+GGG | + | chr3_4:79553377-79553396 | None:intergenic | 40.0% | |
GGTGCGAAGATAAAACTTTC+TGG | - | chr3_4:79553407-79553426 | Msa0525900:intron | 40.0% | |
TGACCGTAAAAGCAGTGATT+TGG | - | chr3_4:79553575-79553594 | Msa0525900:CDS | 40.0% | |
GACCGTAAAAGCAGTGATTT+GGG | - | chr3_4:79553576-79553595 | Msa0525900:CDS | 40.0% | |
! | AGCAGTGATTTGGGATTTAG+TGG | - | chr3_4:79553585-79553604 | Msa0525900:CDS | 40.0% |
TCTACTTGGGTAGTTTATGC+GGG | + | chr3_4:79553676-79553695 | None:intergenic | 40.0% | |
TTATCTGCTTGTATGGCACA+GGG | - | chr3_4:79553741-79553760 | Msa0525900:intron | 40.0% | |
TCTCCATCCATATTGACAAG+TGG | + | chr3_4:79553780-79553799 | None:intergenic | 40.0% | |
!! | TAAGGGCATTCTTGTACCAA+TGG | - | chr3_4:79554293-79554312 | Msa0525900:intron | 40.0% |
TTCACAGGACAGTATCTTCA+TGG | - | chr3_4:79554373-79554392 | Msa0525900:intron | 40.0% | |
TTGTGATAGTTACGTGTAGC+AGG | - | chr3_4:79554831-79554850 | Msa0525900:CDS | 40.0% | |
CACAATGCATATTATGGCAG+AGG | + | chr3_4:79555027-79555046 | None:intergenic | 40.0% | |
!! | GTTTTTGACTAGGTAACTCC+TGG | - | chr3_4:79555113-79555132 | Msa0525900:CDS | 40.0% |
GCAGGTTATTGAAATGATGG+TGG | - | chr3_4:79555549-79555568 | Msa0525900:intron | 40.0% | |
!! | GAAATGATGGTGGACAAAGT+TGG | - | chr3_4:79555559-79555578 | Msa0525900:intron | 40.0% |
!! | AATGATGGTGGACAAAGTTG+GGG | - | chr3_4:79555561-79555580 | Msa0525900:intron | 40.0% |
TGCGACTTTAAGTGTGATTC+CGG | - | chr3_4:79555624-79555643 | Msa0525900:intron | 40.0% | |
!! | TTGATGGTGTACAACAAAGC+TGG | + | chr3_4:79555827-79555846 | None:intergenic | 40.0% |
GTTGAGATCCTCTCCATTTA+GGG | + | chr3_4:79555900-79555919 | None:intergenic | 40.0% | |
TGGTCGAAAGACGACAAATG+TGG | + | chr3_4:79551511-79551530 | None:intergenic | 45.0% | |
TTGTCGTCTTTCGACCAACA+TGG | - | chr3_4:79551514-79551533 | Msa0525900:intron | 45.0% | |
AGTTAGCCCTGTTCCTTCTT+CGG | - | chr3_4:79551666-79551685 | Msa0525900:CDS | 45.0% | |
ACATGTCCGAAGAAGGAACA+GGG | + | chr3_4:79551675-79551694 | None:intergenic | 45.0% | |
TCCTTCTTCGGACATGTCTA+AGG | - | chr3_4:79551678-79551697 | Msa0525900:CDS | 45.0% | |
TCCTTAGACATGTCCGAAGA+AGG | + | chr3_4:79551682-79551701 | None:intergenic | 45.0% | |
GCAAATGCTGCTGCTAAAGT+TGG | - | chr3_4:79551766-79551785 | Msa0525900:intron | 45.0% | |
GGCACAAAAGGTTCATCCAA+AGG | - | chr3_4:79552009-79552028 | Msa0525900:intron | 45.0% | |
TGTATGACTCAAAGCTAGGG+TGG | - | chr3_4:79552280-79552299 | Msa0525900:intron | 45.0% | |
TAGGGTGGCTTAAGATCTGA+TGG | - | chr3_4:79552295-79552314 | Msa0525900:intron | 45.0% | |
AGGGTGGCTTAAGATCTGAT+GGG | - | chr3_4:79552296-79552315 | Msa0525900:intron | 45.0% | |
GTTGACCTCACCTAAAGGTT+TGG | + | chr3_4:79552505-79552524 | None:intergenic | 45.0% | |
CTCAAAGTCCAACGTTAGCA+GGG | + | chr3_4:79552605-79552624 | None:intergenic | 45.0% | |
ACTCAAAGTCCAACGTTAGC+AGG | + | chr3_4:79552606-79552625 | None:intergenic | 45.0% | |
AGTGAATGTGGAAAGGAAGG+AGG | + | chr3_4:79552715-79552734 | None:intergenic | 45.0% | |
! | AGCTTGCTTGCCAGAACAAT+TGG | - | chr3_4:79552928-79552947 | Msa0525900:intron | 45.0% |
GGCAAGCAAGCTACTATACA+AGG | + | chr3_4:79552978-79552997 | None:intergenic | 45.0% | |
TCTGATGTCTTCATTGCACG+AGG | + | chr3_4:79553146-79553165 | None:intergenic | 45.0% | |
GCAAGATGGAAGGACATTTG+AGG | - | chr3_4:79553210-79553229 | Msa0525900:CDS | 45.0% | |
AAGGACATTTGAGGGGAAAG+TGG | - | chr3_4:79553219-79553238 | Msa0525900:CDS | 45.0% | |
GAAGAACCAAGCTTTGCTTC+CGG | + | chr3_4:79553304-79553323 | None:intergenic | 45.0% | |
CAGCAGTGACAGTATTCTGA+AGG | + | chr3_4:79553378-79553397 | None:intergenic | 45.0% | |
CTTCAGAATACTGTCACTGC+TGG | - | chr3_4:79553376-79553395 | Msa0525900:intron | 45.0% | |
CTGTCACTGCTGGTATTGTA+AGG | - | chr3_4:79553386-79553405 | Msa0525900:intron | 45.0% | |
TGGCTGTAAAAGATGTCTCC+TGG | - | chr3_4:79553427-79553446 | Msa0525900:intron | 45.0% | |
TGGGTAGTTTATGCGGGAAA+AGG | + | chr3_4:79553670-79553689 | None:intergenic | 45.0% | |
GTTATCTGCTTGTATGGCAC+AGG | - | chr3_4:79553740-79553759 | Msa0525900:intron | 45.0% | |
TGTATGGCACAGGGAAATTC+TGG | - | chr3_4:79553750-79553769 | Msa0525900:intron | 45.0% | |
!! | ATGAAAGTGTTGGCTGCTGA+TGG | - | chr3_4:79553819-79553838 | Msa0525900:intron | 45.0% |
!! | TGAAAGTGTTGGCTGCTGAT+GGG | - | chr3_4:79553820-79553839 | Msa0525900:intron | 45.0% |
ACACACAGAGTCGATTGGTA+CGG | + | chr3_4:79553856-79553875 | None:intergenic | 45.0% | |
AGCATTCTTAGTCCAAGCCA+TGG | + | chr3_4:79554210-79554229 | None:intergenic | 45.0% | |
TATGTTAGTGAAGCCATGGG+CGG | - | chr3_4:79554534-79554553 | Msa0525900:intron | 45.0% | |
! | CATTGTGTTGCTCAAATGCG+AGG | - | chr3_4:79555040-79555059 | Msa0525900:CDS | 45.0% |
CAATGACAACATCACCAGGA+CGG | + | chr3_4:79555163-79555182 | None:intergenic | 45.0% | |
TGAATTTGATGGAAAGCCCG+TGG | - | chr3_4:79555181-79555200 | Msa0525900:CDS | 45.0% | |
TACCTCCTTCATGCTTTCCA+CGG | + | chr3_4:79555201-79555220 | None:intergenic | 45.0% | |
ATCTGGGGGAGCAAAACAAT+TGG | - | chr3_4:79555302-79555321 | Msa0525900:intron | 45.0% | |
GACTTTAAGTGTGATTCCGG+AGG | - | chr3_4:79555627-79555646 | Msa0525900:intron | 45.0% | |
AAGCTGAGATTGGATTCCTC+CGG | + | chr3_4:79555646-79555665 | None:intergenic | 45.0% | |
GGAATCCAATCTCAGCTTGT+AGG | - | chr3_4:79555648-79555667 | Msa0525900:intron | 45.0% | |
AGTCTCCTACAAGCTGAGAT+TGG | + | chr3_4:79555656-79555675 | None:intergenic | 45.0% | |
GGTTGAGATCCTCTCCATTT+AGG | + | chr3_4:79555901-79555920 | None:intergenic | 45.0% | |
TTGAACAGAAGCTCTGCCGT+TGG | - | chr3_4:79551078-79551097 | Msa0525900:three_prime_UTR | 50.0% | |
AACGATACCCACAGCTCCAA+CGG | + | chr3_4:79551097-79551116 | None:intergenic | 50.0% | |
TAGGAACGTTCGTACGTGTG+CGG | - | chr3_4:79551422-79551441 | Msa0525900:intron | 50.0% | |
GACATGTCCGAAGAAGGAAC+AGG | + | chr3_4:79551676-79551695 | None:intergenic | 50.0% | |
!! | ACAGGGAAGAGTATTGGCTC+TGG | - | chr3_4:79551925-79551944 | Msa0525900:intron | 50.0% |
! | GAAGTGCTACTGTTCCTGCT+TGG | - | chr3_4:79552247-79552266 | Msa0525900:intron | 50.0% |
TACTGTTCCTGCTTGGTCTG+TGG | - | chr3_4:79552254-79552273 | Msa0525900:intron | 50.0% | |
TACAAAGCCACAGACCAAGC+AGG | + | chr3_4:79552264-79552283 | None:intergenic | 50.0% | |
! | AGCTTGCTTGCCGGATCAAT+TGG | - | chr3_4:79552986-79553005 | Msa0525900:CDS | 50.0% |
AAGCTTTGCTTCCGGAAGTG+GGG | + | chr3_4:79553296-79553315 | None:intergenic | 50.0% | |
CAAGCTTTGCTTCCGGAAGT+GGG | + | chr3_4:79553297-79553316 | None:intergenic | 50.0% | |
TCTTCAACTAGGCTTCGTCC+CGG | - | chr3_4:79553319-79553338 | Msa0525900:intron | 50.0% | |
ATGGCTATTACCCAATCCCC+GGG | + | chr3_4:79553340-79553359 | None:intergenic | 50.0% | |
CATGGCTATTACCCAATCCC+CGG | + | chr3_4:79553341-79553360 | None:intergenic | 50.0% | |
GGGGATTGGGTAATAGCCAT+GGG | - | chr3_4:79553340-79553359 | Msa0525900:intron | 50.0% | |
ATGGCACAGGGAAATTCTGG+AGG | - | chr3_4:79553753-79553772 | Msa0525900:intron | 50.0% | |
TGGCACAGGGAAATTCTGGA+GGG | - | chr3_4:79553754-79553773 | Msa0525900:intron | 50.0% | |
TGGAGGGCCACTTGTCAATA+TGG | - | chr3_4:79553770-79553789 | Msa0525900:intron | 50.0% | |
GGGCCACTTGTCAATATGGA+TGG | - | chr3_4:79553774-79553793 | Msa0525900:intron | 50.0% | |
GTAGAAGTTTGAACCGCCCA+TGG | + | chr3_4:79554550-79554569 | None:intergenic | 50.0% | |
! | AAAGCCCGTGGAAAGCATGA+AGG | - | chr3_4:79555193-79555212 | Msa0525900:CDS | 50.0% |
ACCTCCTTCATGCTTTCCAC+GGG | + | chr3_4:79555200-79555219 | None:intergenic | 50.0% | |
! | TTGGCGTTGAAGGAGTGAAC+GGG | + | chr3_4:79555874-79555893 | None:intergenic | 50.0% |
! | CTTGGCGTTGAAGGAGTGAA+CGG | + | chr3_4:79555875-79555894 | None:intergenic | 50.0% |
GTTCACTCCTTCAACGCCAA+GGG | - | chr3_4:79555874-79555893 | Msa0525900:intron | 50.0% | |
! | GCTGTGGGTATCGTTGCTGT+TGG | - | chr3_4:79551102-79551121 | Msa0525900:three_prime_UTR | 55.0% |
CCAAGCTTTGCTTCCGGAAG+TGG | + | chr3_4:79553298-79553317 | None:intergenic | 55.0% | |
CCACTTCCGGAAGCAAAGCT+TGG | - | chr3_4:79553295-79553314 | Msa0525900:intron | 55.0% | |
CTTCAACTAGGCTTCGTCCC+GGG | - | chr3_4:79553320-79553339 | Msa0525900:intron | 55.0% | |
TTCAACTAGGCTTCGTCCCG+GGG | - | chr3_4:79553321-79553340 | Msa0525900:intron | 55.0% | |
CGGGGATTGGGTAATAGCCA+TGG | - | chr3_4:79553339-79553358 | Msa0525900:intron | 55.0% | |
AAGGGAATGCGGACAACCCA+TGG | + | chr3_4:79553359-79553378 | None:intergenic | 55.0% | |
!! | AGTGTTGGCTGCTGATGGGT+TGG | - | chr3_4:79553824-79553843 | Msa0525900:intron | 55.0% |
!! | GTGTTGGCTGCTGATGGGTT+GGG | - | chr3_4:79553825-79553844 | Msa0525900:intron | 55.0% |
TCAGGAGAGTGATACGGCCA+TGG | - | chr3_4:79554190-79554209 | Msa0525900:intron | 55.0% | |
AGAGTGATACGGCCATGGCT+TGG | - | chr3_4:79554195-79554214 | Msa0525900:intron | 55.0% | |
! | CAAAGTTGGGGTGCCCATGA+AGG | - | chr3_4:79555573-79555592 | Msa0525900:intron | 55.0% |
!! | GGTCAAGTTGGTAGAGCCAG+AGG | + | chr3_4:79555787-79555806 | None:intergenic | 55.0% |
AGGAGTGAACGGGAGGAAGA+GGG | + | chr3_4:79555864-79555883 | None:intergenic | 55.0% | |
AAGGAGTGAACGGGAGGAAG+AGG | + | chr3_4:79555865-79555884 | None:intergenic | 55.0% | |
CGTTCACTCCTTCAACGCCA+AGG | - | chr3_4:79555873-79555892 | Msa0525900:intron | 55.0% | |
! | TTTAGGGCCCTTGGCGTTGA+AGG | + | chr3_4:79555884-79555903 | None:intergenic | 55.0% |
TCAACGCCAAGGGCCCTAAA+TGG | - | chr3_4:79555884-79555903 | Msa0525900:intron | 55.0% | |
! | TCCTCTCCATTTAGGGCCCT+TGG | + | chr3_4:79555893-79555912 | None:intergenic | 55.0% |
AAGCTCTGCCGTTGGAGCTG+TGG | - | chr3_4:79551086-79551105 | Msa0525900:three_prime_UTR | 60.0% | |
AGCTCTGCCGTTGGAGCTGT+GGG | - | chr3_4:79551087-79551106 | Msa0525900:three_prime_UTR | 60.0% | |
TAGGCTTCGTCCCGGGGATT+GGG | - | chr3_4:79553327-79553346 | Msa0525900:intron | 60.0% | |
TAGGTAACTCCTGGGTCCCC+TGG | - | chr3_4:79555122-79555141 | Msa0525900:CDS | 60.0% | |
GAACCCAGCACGATCACCAG+GGG | + | chr3_4:79555141-79555160 | None:intergenic | 60.0% | |
GGAACCCAGCACGATCACCA+GGG | + | chr3_4:79555142-79555161 | None:intergenic | 60.0% | |
! | GCCCGTGGAAAGCATGAAGG+AGG | - | chr3_4:79555196-79555215 | Msa0525900:CDS | 60.0% |
GCGTTGAAGGAGTGAACGGG+AGG | + | chr3_4:79555871-79555890 | None:intergenic | 60.0% | |
GCCAAGGGCCCTAAATGGAG+AGG | - | chr3_4:79555889-79555908 | Msa0525900:exon | 60.0% | |
CTAGGCTTCGTCCCGGGGAT+TGG | - | chr3_4:79553326-79553345 | Msa0525900:intron | 65.0% | |
GGTCCCCTGGTGATCGTGCT+GGG | - | chr3_4:79555135-79555154 | Msa0525900:CDS | 65.0% | |
CGGAACCCAGCACGATCACC+AGG | + | chr3_4:79555143-79555162 | None:intergenic | 65.0% | |
GATCGTGCTGGGTTCCGTCC+TGG | - | chr3_4:79555146-79555165 | Msa0525900:CDS | 65.0% | |
GCACGATCACCAGGGGACCC+AGG | + | chr3_4:79555134-79555153 | None:intergenic | 70.0% | |
GGGTCCCCTGGTGATCGTGC+TGG | - | chr3_4:79555134-79555153 | Msa0525900:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 79550889 | 79555971 | 79550889 | ID=Msa0525900;Name=Msa0525900 |
chr3_4 | mRNA | 79550889 | 79555971 | 79550889 | ID=Msa0525900-mRNA-1;Parent=Msa0525900;Name=Msa0525900-mRNA-1;_AED=0.23;_eAED=0.23;_QI=72|1|1|1|0.8|0.72|11|302|433 |
chr3_4 | exon | 79550889 | 79551307 | 79550889 | ID=Msa0525900-mRNA-1:exon:23865;Parent=Msa0525900-mRNA-1 |
chr3_4 | exon | 79551643 | 79551735 | 79551643 | ID=Msa0525900-mRNA-1:exon:23864;Parent=Msa0525900-mRNA-1 |
chr3_4 | exon | 79552546 | 79552666 | 79552546 | ID=Msa0525900-mRNA-1:exon:23863;Parent=Msa0525900-mRNA-1 |
chr3_4 | exon | 79552956 | 79553098 | 79552956 | ID=Msa0525900-mRNA-1:exon:23862;Parent=Msa0525900-mRNA-1 |
chr3_4 | exon | 79553210 | 79553291 | 79553210 | ID=Msa0525900-mRNA-1:exon:23861;Parent=Msa0525900-mRNA-1 |
chr3_4 | exon | 79553453 | 79553664 | 79553453 | ID=Msa0525900-mRNA-1:exon:23860;Parent=Msa0525900-mRNA-1 |
chr3_4 | exon | 79554825 | 79554952 | 79554825 | ID=Msa0525900-mRNA-1:exon:23859;Parent=Msa0525900-mRNA-1 |
chr3_4 | exon | 79555040 | 79555219 | 79555040 | ID=Msa0525900-mRNA-1:exon:23858;Parent=Msa0525900-mRNA-1 |
chr3_4 | exon | 79555325 | 79555435 | 79555325 | ID=Msa0525900-mRNA-1:exon:23857;Parent=Msa0525900-mRNA-1 |
chr3_4 | exon | 79555698 | 79555797 | 79555698 | ID=Msa0525900-mRNA-1:exon:23856;Parent=Msa0525900-mRNA-1 |
chr3_4 | exon | 79555885 | 79555971 | 79555885 | ID=Msa0525900-mRNA-1:exon:23855;Parent=Msa0525900-mRNA-1 |
chr3_4 | five_prime_UTR | 79555900 | 79555971 | 79555900 | ID=Msa0525900-mRNA-1:five_prime_utr;Parent=Msa0525900-mRNA-1 |
chr3_4 | CDS | 79555885 | 79555899 | 79555885 | ID=Msa0525900-mRNA-1:cds;Parent=Msa0525900-mRNA-1 |
chr3_4 | CDS | 79555698 | 79555797 | 79555698 | ID=Msa0525900-mRNA-1:cds;Parent=Msa0525900-mRNA-1 |
chr3_4 | CDS | 79555325 | 79555435 | 79555325 | ID=Msa0525900-mRNA-1:cds;Parent=Msa0525900-mRNA-1 |
chr3_4 | CDS | 79555040 | 79555219 | 79555040 | ID=Msa0525900-mRNA-1:cds;Parent=Msa0525900-mRNA-1 |
chr3_4 | CDS | 79554825 | 79554952 | 79554825 | ID=Msa0525900-mRNA-1:cds;Parent=Msa0525900-mRNA-1 |
chr3_4 | CDS | 79553453 | 79553664 | 79553453 | ID=Msa0525900-mRNA-1:cds;Parent=Msa0525900-mRNA-1 |
chr3_4 | CDS | 79553210 | 79553291 | 79553210 | ID=Msa0525900-mRNA-1:cds;Parent=Msa0525900-mRNA-1 |
chr3_4 | CDS | 79552956 | 79553098 | 79552956 | ID=Msa0525900-mRNA-1:cds;Parent=Msa0525900-mRNA-1 |
chr3_4 | CDS | 79552546 | 79552666 | 79552546 | ID=Msa0525900-mRNA-1:cds;Parent=Msa0525900-mRNA-1 |
chr3_4 | CDS | 79551643 | 79551735 | 79551643 | ID=Msa0525900-mRNA-1:cds;Parent=Msa0525900-mRNA-1 |
chr3_4 | CDS | 79551191 | 79551307 | 79551191 | ID=Msa0525900-mRNA-1:cds;Parent=Msa0525900-mRNA-1 |
chr3_4 | three_prime_UTR | 79550889 | 79551190 | 79550889 | ID=Msa0525900-mRNA-1:three_prime_utr;Parent=Msa0525900-mRNA-1 |
Gene Sequence |
Protein sequence |