AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1165110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165110 MtrunA17_Chr7g0272621 96.767 433 14 0 1 433 1 433 0.0 848
Msa1165110 MtrunA17_Chr6g0450671 30.293 307 170 10 128 413 128 411 4.00e-32 126
Msa1165110 MtrunA17_Chr6g0453121 28.571 308 182 10 147 430 165 458 3.54e-30 121
Msa1165110 MtrunA17_Chr2g0285791 35.519 183 108 5 147 320 133 314 2.37e-22 97.1
Msa1165110 MtrunA17_Chr5g0426331 27.143 280 159 7 167 415 137 402 3.47e-19 89.4
Msa1165110 MtrunA17_Chr5g0426381 35.135 111 71 1 308 417 1 111 2.59e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165110 AT5G27660.2 61.327 437 156 5 1 430 2 432 0.0 527
Msa1165110 AT5G27660.1 61.882 425 143 6 13 430 9 421 1.70e-180 510
Msa1165110 AT3G27925.1 31.193 327 178 11 128 429 135 439 9.02e-34 131
Msa1165110 AT3G27925.2 31.193 327 178 11 128 429 135 439 9.02e-34 131
Msa1165110 AT5G39830.1 29.545 308 179 10 147 430 155 448 4.45e-31 124
Msa1165110 AT5G39830.2 28.525 305 172 10 147 430 155 434 9.24e-27 112
Msa1165110 AT4G18370.1 36.458 192 110 6 147 328 131 320 2.07e-21 94.7

Find 150 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTGAGATCCTCTCCATTT+AGG 0.184232 7_4:+56961590 None:intergenic
CGTTGAAGAGTGTAGAATTT+TGG 0.246728 7_4:-56966660 Msa1165110:five_prime_UTR
GTTGAGATCCTCTCCATTTA+GGG 0.246868 7_4:+56961591 None:intergenic
TTCATTCCCTAATGTCAATA+AGG 0.269170 7_4:-56963213 Msa1165110:CDS
TGTATGGCACAGGGAAATTC+TGG 0.299439 7_4:-56963738 Msa1165110:intron
TCCTTCTTCGGACATGTCTA+AGG 0.309122 7_4:-56965909 Msa1165110:CDS
ATTGGCTTTGTAGATTTCTA+TGG 0.309418 7_4:-56965692 Msa1165110:intron
TGGAGGGCCACTTGTCAATA+TGG 0.315113 7_4:-56963718 Msa1165110:CDS
TCAACGCCAAGGGCCCTAAA+TGG 0.323892 7_4:-56961604 Msa1165110:three_prime_UTR
CTAGGCTTCGTCCCGGGGAT+TGG 0.328014 7_4:-56964162 Msa1165110:CDS
TGACCGTAAAAGCAGTGATT+TGG 0.333135 7_4:-56963913 Msa1165110:CDS
TGCGACTTTAAGTGTGATTC+CGG 0.337225 7_4:-56961864 Msa1165110:CDS
AGAATGCCCTTATTGACATT+AGG 0.346180 7_4:+56963206 None:intergenic
ATCTATCATGAGTTATTTCC+TGG 0.355463 7_4:-56966630 Msa1165110:intron
GGGTCCCCTGGTGATCGTGC+TGG 0.357975 7_4:-56962354 Msa1165110:CDS
GAATGCCCTTATTGACATTA+GGG 0.359755 7_4:+56963207 None:intergenic
AAGCCATCTAAGGATACTTT+TGG 0.364970 7_4:-56965857 Msa1165110:CDS
GACCGTAAAAGCAGTGATTT+GGG 0.371160 7_4:-56963912 Msa1165110:CDS
GACATGTCTAAGGAAACTTC+TGG 0.371904 7_4:-56965899 Msa1165110:CDS
ATCTGTTTGTAAATACTCTC+TGG 0.378364 7_4:+56963875 None:intergenic
TGATGAATCAAAGCCATCTA+AGG 0.379781 7_4:-56965867 Msa1165110:CDS
AGCAGTGATTTGGGATTTAG+TGG 0.380979 7_4:-56963903 Msa1165110:CDS
ATGTGAACAAGTGGTATATT+TGG 0.386975 7_4:-56961751 Msa1165110:three_prime_UTR
GATGTTGTCATTGAATTTGA+TGG 0.389841 7_4:-56962318 Msa1165110:CDS
AAGGAGTGAACGGGAGGAAG+AGG 0.389975 7_4:+56961626 None:intergenic
AGTTAGCCCTGTTCCTTCTT+CGG 0.392277 7_4:-56965921 Msa1165110:CDS
TTGAACACAAACCTTCCCTT+TGG 0.396372 7_4:+56965562 None:intergenic
AAATGATGGTGGACAAAGTT+GGG 0.397529 7_4:-56961928 Msa1165110:CDS
TAGGCTTCGTCCCGGGGATT+GGG 0.404252 7_4:-56964161 Msa1165110:CDS
CAAAGCTTGGTTCTTCAACT+AGG 0.415056 7_4:-56964180 Msa1165110:CDS
TCCTCTCCATTTAGGGCCCT+TGG 0.417772 7_4:+56961598 None:intergenic
CCAAGCTTTGCTTCCGGAAG+TGG 0.420101 7_4:+56964193 None:intergenic
AAATTCTGAAACCCCACTTC+CGG 0.423531 7_4:-56964206 Msa1165110:CDS
CAAGATGGAAGGACATTTGA+GGG 0.423591 7_4:-56964277 Msa1165110:CDS
TTTAGGGCCCTTGGCGTTGA+AGG 0.425402 7_4:+56961607 None:intergenic
CTTCAACTAGGCTTCGTCCC+GGG 0.427401 7_4:-56964168 Msa1165110:CDS
CGGAACCCAGCACGATCACC+AGG 0.431496 7_4:+56962348 None:intergenic
TGCCATTGCAAGATATATCA+TGG 0.437451 7_4:-56966132 Msa1165110:CDS
CTACCAAAAGTATCCTTAGA+TGG 0.439534 7_4:+56965854 None:intergenic
TCATTCCCTAATGTCAATAA+GGG 0.444524 7_4:-56963212 Msa1165110:CDS
GGAATCCAATCTCAGCTTGT+AGG 0.450834 7_4:-56961840 Msa1165110:exon
AACTAATGACTAAAGTGAAC+GGG 0.452413 7_4:+56961569 None:intergenic
AGTCTCCTACAAGCTGAGAT+TGG 0.457251 7_4:+56961835 None:intergenic
GGTCCCCTGGTGATCGTGCT+GGG 0.461837 7_4:-56962353 Msa1165110:CDS
ACTGGAATTAGTGTGGTTAT+CGG 0.462039 7_4:+56966442 None:intergenic
ACATGTCTAAGGAAACTTCT+GGG 0.469601 7_4:-56965898 Msa1165110:CDS
GAAGAACCAAGCTTTGCTTC+CGG 0.472595 7_4:+56964187 None:intergenic
GTGGACGTAACAAATCAAAC+GGG 0.472824 7_4:+56966095 None:intergenic
TTTGCTACAGGGAAGAGTAT+TGG 0.475530 7_4:-56965668 Msa1165110:CDS
GTTGCAGGTTATTGAAATGA+TGG 0.475950 7_4:-56961942 Msa1165110:intron
TAGGTAACTCCTGGGTCCCC+TGG 0.475953 7_4:-56962366 Msa1165110:CDS
AGTGTTGGCTGCTGATGGGT+TGG 0.476294 7_4:-56963664 Msa1165110:CDS
AGGAGTGAACGGGAGGAAGA+GGG 0.476400 7_4:+56961627 None:intergenic
TCCTTAGACATGTCCGAAGA+AGG 0.477491 7_4:+56965908 None:intergenic
ATAGAGCATTTCAAGAAAAG+TGG 0.478194 7_4:-56963606 Msa1165110:CDS
TGTGGACGTAACAAATCAAA+CGG 0.478244 7_4:+56966094 None:intergenic
GTGTTGGCTGCTGATGGGTT+GGG 0.482417 7_4:-56963663 Msa1165110:CDS
GACATGTCCGAAGAAGGAAC+AGG 0.489693 7_4:+56965914 None:intergenic
TACCTCCTTCATGCTTTCCA+CGG 0.491263 7_4:+56962290 None:intergenic
CAAGCTTTGCTTCCGGAAGT+GGG 0.491393 7_4:+56964194 None:intergenic
AGCTCTGCCGTTGGAGCTGT+GGG 0.496151 7_4:-56966497 Msa1165110:CDS
GATCGTGCTGGGTTCCGTCC+TGG 0.498642 7_4:-56962342 Msa1165110:CDS
TTGGCGTTGAAGGAGTGAAC+GGG 0.499034 7_4:+56961617 None:intergenic
GCAAGATGGAAGGACATTTG+AGG 0.500220 7_4:-56964278 Msa1165110:CDS
ATTGAAGTCACTTTGCAAGA+TGG 0.504105 7_4:-56964292 Msa1165110:CDS
CGGGGATTGGGTAATAGCCA+TGG 0.506433 7_4:-56964149 Msa1165110:CDS
ATCGAAATATTAACAACAGC+AGG 0.506520 7_4:+56965797 None:intergenic
CCACTTCCGGAAGCAAAGCT+TGG 0.510741 7_4:-56964193 Msa1165110:CDS
AAGGACATTTGAGGGGAAAG+TGG 0.512120 7_4:-56964269 Msa1165110:CDS
AGAGTGATACGGCCATGGCT+TGG 0.514213 7_4:-56963293 Msa1165110:CDS
GGAACAATCATTAACAAAGA+TGG 0.515974 7_4:-56965641 Msa1165110:CDS
ATGAAAGTGTTGGCTGCTGA+TGG 0.519245 7_4:-56963669 Msa1165110:CDS
TTCAACTAGGCTTCGTCCCG+GGG 0.519860 7_4:-56964167 Msa1165110:CDS
AAGCTCTGCCGTTGGAGCTG+TGG 0.521174 7_4:-56966498 Msa1165110:CDS
GCAAATGCTGCTGCTAAAGT+TGG 0.521599 7_4:-56965821 Msa1165110:CDS
CGTTCACTCCTTCAACGCCA+AGG 0.524270 7_4:-56961615 Msa1165110:three_prime_UTR
GAAATGATGGTGGACAAAGT+TGG 0.526009 7_4:-56961929 Msa1165110:CDS
ACCTCCTTCATGCTTTCCAC+GGG 0.531605 7_4:+56962291 None:intergenic
GCACAAAAGGTTCATCCAAA+GGG 0.534147 7_4:-56965577 Msa1165110:CDS
CATGAAAATCAACGACAACA+TGG 0.539853 7_4:+56965600 None:intergenic
TCTTCAACTAGGCTTCGTCC+CGG 0.539957 7_4:-56964169 Msa1165110:CDS
TCAGGAGAGTGATACGGCCA+TGG 0.540162 7_4:-56963298 Msa1165110:intron
ACAGGGAAGAGTATTGGCTC+TGG 0.541432 7_4:-56965662 Msa1165110:CDS
CTGTCACTGCTGGTATTGTA+AGG 0.545354 7_4:-56964102 Msa1165110:intron
CATGGCTATTACCCAATCCC+CGG 0.547015 7_4:+56964150 None:intergenic
AAGGGAATGCGGACAACCCA+TGG 0.551296 7_4:+56964132 None:intergenic
GGCACAAAAGGTTCATCCAA+AGG 0.554675 7_4:-56965578 Msa1165110:CDS
TAAGGGCATTCTTGTACCAA+TGG 0.554993 7_4:-56963195 Msa1165110:intron
TTGAACAGAAGCTCTGCCGT+TGG 0.555512 7_4:-56966506 Msa1165110:CDS
GGGCCACTTGTCAATATGGA+TGG 0.558327 7_4:-56963714 Msa1165110:CDS
GTTCACTCCTTCAACGCCAA+GGG 0.561597 7_4:-56961614 Msa1165110:three_prime_UTR
CTTCAGAATACTGTCACTGC+TGG 0.562372 7_4:-56964112 Msa1165110:CDS
TAGAGCATTTCAAGAAAAGT+GGG 0.563537 7_4:-56963605 Msa1165110:intron
ACACACAGAGTCGATTGGTA+CGG 0.565045 7_4:+56963635 None:intergenic
AGATATATCATGGTTGACAT+TGG 0.565755 7_4:-56966122 Msa1165110:CDS
AACCATGATATATCTTGCAA+TGG 0.566757 7_4:+56966130 None:intergenic
GATATATCTTGCAATGGCAA+AGG 0.570631 7_4:+56966136 None:intergenic
CAGCAGTGACAGTATTCTGA+AGG 0.571751 7_4:+56964113 None:intergenic
CAAGTTCTAATGTGAACAAG+TGG 0.573289 7_4:-56961760 Msa1165110:three_prime_UTR
TAGGAACGTTCGTACGTGTG+CGG 0.573882 7_4:-56966162 Msa1165110:CDS
AATATGGATGGAGAAATTGT+TGG 0.576439 7_4:-56963702 Msa1165110:CDS
TCTGTTTGTAAATACTCTCT+GGG 0.577942 7_4:+56963876 None:intergenic
AACGATACCCACAGCTCCAA+CGG 0.578717 7_4:+56966490 None:intergenic
GCTGTGGGTATCGTTGCTGT+TGG 0.578767 7_4:-56966482 Msa1165110:CDS
AAGCTGAGATTGGATTCCTC+CGG 0.580230 7_4:+56961845 None:intergenic
CACCGAAAAGGTTGTGACAG+TGG 0.581944 7_4:-56966698 Msa1165110:five_prime_UTR
AAGTCACTTTGCAAGATGGA+AGG 0.582092 7_4:-56964288 Msa1165110:CDS
CTTGGCGTTGAAGGAGTGAA+CGG 0.585542 7_4:+56961616 None:intergenic
AAACTAATGACTAAAGTGAA+CGG 0.587325 7_4:+56961568 None:intergenic
GGGGATTGGGTAATAGCCAT+GGG 0.587526 7_4:-56964148 Msa1165110:CDS
ATGAAAATCAACGACAACAT+GGG 0.587711 7_4:+56965601 None:intergenic
AAAAGGTTCATCCAAAGGGA+AGG 0.590674 7_4:-56965573 Msa1165110:intron
ATGGCTATTACCCAATCCCC+GGG 0.595774 7_4:+56964151 None:intergenic
GGTCAAGTTGGTAGAGCCAG+AGG 0.599131 7_4:+56961704 None:intergenic
TGAAAGTGTTGGCTGCTGAT+GGG 0.600081 7_4:-56963668 Msa1165110:CDS
GAACCCAGCACGATCACCAG+GGG 0.600193 7_4:+56962350 None:intergenic
GCACGATCACCAGGGGACCC+AGG 0.601429 7_4:+56962357 None:intergenic
ATTGCTCACTGGAATTAGTG+TGG 0.602326 7_4:+56966435 None:intergenic
TCTCCATCCATATTGACAAG+TGG 0.603386 7_4:+56963711 None:intergenic
CAAAGTTGGGGTGCCCATGA+AGG 0.604534 7_4:-56961915 Msa1165110:CDS
AACAGATTGTGCAATTAATG+TGG 0.605597 7_4:-56963859 Msa1165110:intron
CATGTCTAAGGAAACTTCTG+GGG 0.608468 7_4:-56965897 Msa1165110:CDS
TGAATTTGATGGAAAGCCCG+TGG 0.609844 7_4:-56962307 Msa1165110:CDS
TGGTCGAAAGACGACAAATG+TGG 0.613228 7_4:+56966076 None:intergenic
AAAGCCCGTGGAAAGCATGA+AGG 0.616163 7_4:-56962295 Msa1165110:CDS
AAGCTTTGCTTCCGGAAGTG+GGG 0.621714 7_4:+56964195 None:intergenic
TTGTCGTCTTTCGACCAACA+TGG 0.625198 7_4:-56966070 Msa1165110:intron
AATTCAATGACAACATCACC+AGG 0.627515 7_4:+56962324 None:intergenic
AGCATTCTTAGTCCAAGCCA+TGG 0.630955 7_4:+56963281 None:intergenic
TTGATGGTGTACAACAAAGC+TGG 0.638889 7_4:+56961664 None:intergenic
AGCAGTGACAGTATTCTGAA+GGG 0.641778 7_4:+56964114 None:intergenic
GTTAATATTTCGATTCCACA+AGG 0.645580 7_4:-56965788 Msa1165110:intron
GCCAAGGGCCCTAAATGGAG+AGG 0.645596 7_4:-56961599 Msa1165110:three_prime_UTR
AGAAAGAGGACAAACCATGT+TGG 0.646314 7_4:+56966056 None:intergenic
GGAACCCAGCACGATCACCA+GGG 0.647337 7_4:+56962349 None:intergenic
GACTTTAAGTGTGATTCCGG+AGG 0.648706 7_4:-56961861 Msa1165110:CDS
ACAGTATTCTGAAGGGAATG+CGG 0.654266 7_4:+56964121 None:intergenic
ATGGCACAGGGAAATTCTGG+AGG 0.659592 7_4:-56963735 Msa1165110:intron
CAATGACAACATCACCAGGA+CGG 0.663393 7_4:+56962328 None:intergenic
GCCCGTGGAAAGCATGAAGG+AGG 0.665398 7_4:-56962292 Msa1165110:intron
AACTTGTCATCAATGAAACA+AGG 0.669183 7_4:+56961777 None:intergenic
GCAGGTTATTGAAATGATGG+TGG 0.673889 7_4:-56961939 Msa1165110:intron
AGTGAACATCATGAAAGTGT+TGG 0.676552 7_4:-56963679 Msa1165110:CDS
GCGTTGAAGGAGTGAACGGG+AGG 0.677613 7_4:+56961620 None:intergenic
ACATGTCCGAAGAAGGAACA+GGG 0.682454 7_4:+56965915 None:intergenic
TGGCACAGGGAAATTCTGGA+GGG 0.686679 7_4:-56963734 Msa1165110:intron
AAGATGGAAGGACATTTGAG+GGG 0.693003 7_4:-56964276 Msa1165110:CDS
AATGATGGTGGACAAAGTTG+GGG 0.709009 7_4:-56961927 Msa1165110:CDS
ATGTCTAAGGAAACTTCTGG+GGG 0.710738 7_4:-56965896 Msa1165110:CDS
TGGACGTAACAAATCAAACG+GGG 0.745894 7_4:+56966096 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAAAGTAAAAGAAAAT+AGG + chr7_4:56964207-56964226 None:intergenic 10.0%
!!! TTTTTTTATAACAATAACAA+CGG - chr7_4:56965607-56965626 Msa1165110:CDS 10.0%
!! TAATCTTGAAATAAAGTTAA+TGG - chr7_4:56961850-56961869 Msa1165110:CDS 15.0%
!!! TATTTTCAGAATAATTTTCT+AGG + chr7_4:56965376-56965395 None:intergenic 15.0%
!! TAAGATAAAATAAAATGATC+TGG - chr7_4:56966033-56966052 Msa1165110:intron 15.0%
!! AAGATAAAATAAAATGATCT+GGG - chr7_4:56966034-56966053 Msa1165110:intron 15.0%
!! AATAATCAATTCATCTAACA+TGG - chr7_4:56962042-56962061 Msa1165110:intron 20.0%
!!! ATTTAGAACTGAAAATTTGT+AGG - chr7_4:56962268-56962287 Msa1165110:intron 20.0%
!!! TTTAGAACTGAAAATTTGTA+GGG - chr7_4:56962269-56962288 Msa1165110:intron 20.0%
!! AAGAAATATATCTTGAATTG+TGG + chr7_4:56963221-56963240 None:intergenic 20.0%
!! TGTTAAATCTAACATTGAAA+TGG + chr7_4:56964233-56964252 None:intergenic 20.0%
!!! CTGATTTTTTAAATGTCTTT+TGG - chr7_4:56964257-56964276 Msa1165110:CDS 20.0%
!!! TTCATGTATTGTATGATTTT+TGG - chr7_4:56964289-56964308 Msa1165110:CDS 20.0%
!! GATCATAATATATCCATAAA+AGG + chr7_4:56964820-56964839 None:intergenic 20.0%
!!! AGTAAACTTTTTTTCTTTTC+AGG - chr7_4:56964920-56964939 Msa1165110:intron 20.0%
!! AAAATTACACAAAACATAAG+CGG + chr7_4:56965687-56965706 None:intergenic 20.0%
!!! AAATTTAAACGTTTTTGACT+AGG - chr7_4:56965851-56965870 Msa1165110:CDS 20.0%
!! AGATAAAATAAAATGATCTG+GGG - chr7_4:56966035-56966054 Msa1165110:intron 20.0%
!! CAAACTTATACTAATCTTTA+GGG - chr7_4:56966104-56966123 Msa1165110:CDS 20.0%
! AGAAAGAATTAACAAATACC+AGG + chr7_4:56961627-56961646 None:intergenic 25.0%
! GATGTATTTGTGAAAAACTA+AGG + chr7_4:56963106-56963125 None:intergenic 25.0%
! TGGTATATACTAACTAGTTA+TGG + chr7_4:56963201-56963220 None:intergenic 25.0%
! AATTCAATTGTTAGAGTGAT+AGG + chr7_4:56963339-56963358 None:intergenic 25.0%
! TATTAAAAGTGAATGTGGAA+AGG + chr7_4:56963371-56963390 None:intergenic 25.0%
!!! TCCACATTCACTTTTAATAA+TGG - chr7_4:56963372-56963391 Msa1165110:intron 25.0%
!!! CCACATTCACTTTTAATAAT+GGG - chr7_4:56963373-56963392 Msa1165110:intron 25.0%
! AGGATGTTAAGAAAGATAAA+GGG + chr7_4:56963437-56963456 None:intergenic 25.0%
! TCTTGATATTCTTATGTTGT+AGG - chr7_4:56963602-56963621 Msa1165110:intron 25.0%
!! TTGAGTCTTAAATGATTTTC+AGG + chr7_4:56963711-56963730 None:intergenic 25.0%
! AAAGAAAATAGGTTAAAACC+AGG + chr7_4:56964196-56964215 None:intergenic 25.0%
! TTCAGATTGTCACATATAAA+CGG + chr7_4:56964741-56964760 None:intergenic 25.0%
!! CTTACAATTTTCACCTTTTA+TGG - chr7_4:56964804-56964823 Msa1165110:intron 25.0%
! GTCAATCAAAATTGTTTATG+CGG + chr7_4:56964842-56964861 None:intergenic 25.0%
!! TTGATTGACATACTTTTATG+TGG - chr7_4:56964853-56964872 Msa1165110:intron 25.0%
! CATCTAAAGATCGATTAATT+GGG + chr7_4:56965073-56965092 None:intergenic 25.0%
!! ATACTTGTTACTATCATACT+TGG - chr7_4:56965318-56965337 Msa1165110:intron 25.0%
! TTTGATCTATCAATAAGATG+AGG + chr7_4:56965401-56965420 None:intergenic 25.0%
! ATTACAAATCAAAGAGAAGA+TGG - chr7_4:56965495-56965514 Msa1165110:intron 25.0%
! GATAAAATAAAATGATCTGG+GGG - chr7_4:56966036-56966055 Msa1165110:intron 25.0%
! CCTAAAGATTAGTATAAGTT+TGG + chr7_4:56966106-56966125 None:intergenic 25.0%
! CCAAACTTATACTAATCTTT+AGG - chr7_4:56966103-56966122 Msa1165110:CDS 25.0%
! CATAATGAAGAATAATCTCA+CGG + chr7_4:56966228-56966247 None:intergenic 25.0%
! AAACTAATGACTAAAGTGAA+CGG + chr7_4:56966671-56966690 None:intergenic 25.0%
! ATCTATCATGAGTTATTTCC+TGG - chr7_4:56961606-56961625 Msa1165110:three_prime_UTR 30.0%
! TTGAAGAATCTCTCTGATTT+TGG - chr7_4:56961673-56961692 Msa1165110:three_prime_UTR 30.0%
! TGAAGAATCTCTCTGATTTT+GGG - chr7_4:56961674-56961693 Msa1165110:three_prime_UTR 30.0%
AGATTTAGTTAATTGCTCAC+TGG + chr7_4:56961815-56961834 None:intergenic 30.0%
! TTAATGGCATGCTTTTCAAT+TGG - chr7_4:56961866-56961885 Msa1165110:CDS 30.0%
AATATTGACGATGCATACAA+AGG - chr7_4:56962006-56962025 Msa1165110:intron 30.0%
TCTAACATGGCTTCAAATTT+AGG - chr7_4:56962055-56962074 Msa1165110:intron 30.0%
AACCATGATATATCTTGCAA+TGG + chr7_4:56962109-56962128 None:intergenic 30.0%
AGATATATCATGGTTGACAT+TGG - chr7_4:56962114-56962133 Msa1165110:intron 30.0%
TAAAAGTTCAAACCAGAAAG+AGG + chr7_4:56962197-56962216 None:intergenic 30.0%
ATCGAAATATTAACAACAGC+AGG + chr7_4:56962442-56962461 None:intergenic 30.0%
GTTAATATTTCGATTCCACA+AGG - chr7_4:56962448-56962467 Msa1165110:intron 30.0%
AACGATTCATTCAGATGAAA+AGG + chr7_4:56962482-56962501 None:intergenic 30.0%
!! ATTGGCTTTGTAGATTTCTA+TGG - chr7_4:56962544-56962563 Msa1165110:intron 30.0%
!! ATTTCTATGGTTTTGCTACA+GGG - chr7_4:56962557-56962576 Msa1165110:intron 30.0%
GGAACAATCATTAACAAAGA+TGG - chr7_4:56962595-56962614 Msa1165110:intron 30.0%
ATGAAAATCAACGACAACAT+GGG + chr7_4:56962638-56962657 None:intergenic 30.0%
TTCAAGACAGTGTACATATT+TGG + chr7_4:56962716-56962735 None:intergenic 30.0%
ATATAACTGTAGCTTGATAC+TGG + chr7_4:56962850-56962869 None:intergenic 30.0%
CTACATGAGTTAGAATAAGA+CGG - chr7_4:56963173-56963192 Msa1165110:intron 30.0%
GAAAGAAAGTTCAACTGTTA+GGG + chr7_4:56963298-56963317 None:intergenic 30.0%
TGAAAGAAAGTTCAACTGTT+AGG + chr7_4:56963299-56963318 None:intergenic 30.0%
CCCATTATTAAAAGTGAATG+TGG + chr7_4:56963376-56963395 None:intergenic 30.0%
CAAGATTAGAGAGAAAATTG+TGG + chr7_4:56963404-56963423 None:intergenic 30.0%
GAGGATGTTAAGAAAGATAA+AGG + chr7_4:56963438-56963457 None:intergenic 30.0%
CTTGTAATGAGCTTATGTAT+GGG + chr7_4:56963491-56963510 None:intergenic 30.0%
ACTTGTAATGAGCTTATGTA+TGG + chr7_4:56963492-56963511 None:intergenic 30.0%
ATGATAGTTTATCATGCTGT+AGG - chr7_4:56963516-56963535 Msa1165110:intron 30.0%
ATATCAAGAACCAATTGTTC+TGG + chr7_4:56963591-56963610 None:intergenic 30.0%
ATATTGAGAACCAATTGATC+CGG + chr7_4:56963649-56963668 None:intergenic 30.0%
TCTGTTTGTAAATACTCTCT+GGG + chr7_4:56964363-56964382 None:intergenic 30.0%
ATCTGTTTGTAAATACTCTC+TGG + chr7_4:56964364-56964383 None:intergenic 30.0%
AACAGATTGTGCAATTAATG+TGG - chr7_4:56964377-56964396 Msa1165110:intron 30.0%
ATAAACTACCCAAGTAGATA+TGG - chr7_4:56964426-56964445 Msa1165110:intron 30.0%
TCCATATTCCATATCTACTT+GGG + chr7_4:56964437-56964456 None:intergenic 30.0%
ATCCATATTCCATATCTACT+TGG + chr7_4:56964438-56964457 None:intergenic 30.0%
GTAGATATGGAATATGGATT+TGG - chr7_4:56964439-56964458 Msa1165110:intron 30.0%
AATATGGATGGAGAAATTGT+TGG - chr7_4:56964534-56964553 Msa1165110:intron 30.0%
! ATAGAGCATTTCAAGAAAAG+TGG - chr7_4:56964630-56964649 Msa1165110:intron 30.0%
! TAGAGCATTTCAAGAAAAGT+GGG - chr7_4:56964631-56964650 Msa1165110:intron 30.0%
TCCAAGCAGAAAGTTTAATT+AGG - chr7_4:56964775-56964794 Msa1165110:intron 30.0%
TGGTTAATACTTGAGTAGTT+AGG - chr7_4:56964873-56964892 Msa1165110:intron 30.0%
TTCATTCCCTAATGTCAATA+AGG - chr7_4:56965023-56965042 Msa1165110:intron 30.0%
TCATTCCCTAATGTCAATAA+GGG - chr7_4:56965024-56965043 Msa1165110:intron 30.0%
ATTAATTGGGAACATACCAT+TGG + chr7_4:56965060-56965079 None:intergenic 30.0%
GCATCTAAAGATCGATTAAT+TGG + chr7_4:56965074-56965093 None:intergenic 30.0%
! TTTTCAGAATCTAGATTCAC+AGG - chr7_4:56965106-56965125 Msa1165110:intron 30.0%
TTCAAAGTTGTTTGCAAAGT+TGG - chr7_4:56965176-56965195 Msa1165110:intron 30.0%
TTATTATGTTAGTGAAGCCA+TGG - chr7_4:56965278-56965297 Msa1165110:intron 30.0%
TATTATGTTAGTGAAGCCAT+GGG - chr7_4:56965279-56965298 Msa1165110:intron 30.0%
TGTTACTATCATACTTGGAT+AGG - chr7_4:56965323-56965342 Msa1165110:intron 30.0%
GTTACTATCATACTTGGATA+GGG - chr7_4:56965324-56965343 Msa1165110:intron 30.0%
CTAGGATTCTCACTTTAATA+GGG + chr7_4:56965358-56965377 None:intergenic 30.0%
! TCTAGGATTCTCACTTTAAT+AGG + chr7_4:56965359-56965378 None:intergenic 30.0%
AAGTGAACACAAAAACAAAG+AGG - chr7_4:56965419-56965438 Msa1165110:intron 30.0%
CGTAACTATCACAATTAGAT+AGG + chr7_4:56965573-56965592 None:intergenic 30.0%
AATGTTGTCTAATCAGAAAG+AGG + chr7_4:56965643-56965662 None:intergenic 30.0%
GAAATAATGTGTTTGTCACA+AGG - chr7_4:56965828-56965847 Msa1165110:CDS 30.0%
GATGTTGTCATTGAATTTGA+TGG - chr7_4:56965918-56965937 Msa1165110:CDS 30.0%
!!! TCGATTTTTTTTACTGTCTG+TGG + chr7_4:56966205-56966224 None:intergenic 30.0%
CATAGATGTAAAATTGTTGC+AGG - chr7_4:56966279-56966298 Msa1165110:intron 30.0%
!! CTTTTAACTACAACCTTCAT+GGG + chr7_4:56966337-56966356 None:intergenic 30.0%
!! TCTTTTAACTACAACCTTCA+TGG + chr7_4:56966338-56966357 None:intergenic 30.0%
AACTTGTCATCAATGAAACA+AGG + chr7_4:56966462-56966481 None:intergenic 30.0%
ATGTGAACAAGTGGTATATT+TGG - chr7_4:56966485-56966504 Msa1165110:CDS 30.0%
!!! CCTTTATTTTTTGGTCAAGT+TGG + chr7_4:56966547-56966566 None:intergenic 30.0%
CCAACTTGACCAAAAAATAA+AGG - chr7_4:56966544-56966563 Msa1165110:intron 30.0%
!!! CTGGTAGAACCTTTATTTTT+TGG + chr7_4:56966556-56966575 None:intergenic 30.0%
! GGAGAAAAATTTAGTGTTGA+TGG + chr7_4:56966591-56966610 None:intergenic 30.0%
AACTAATGACTAAAGTGAAC+GGG + chr7_4:56966670-56966689 None:intergenic 30.0%
!! CGTTGAAGAGTGTAGAATTT+TGG - chr7_4:56961576-56961595 Msa1165110:three_prime_UTR 35.0%
! GAAGAATCTCTCTGATTTTG+GGG - chr7_4:56961675-56961694 Msa1165110:three_prime_UTR 35.0%
! AAGAATCTCTCTGATTTTGG+GGG - chr7_4:56961676-56961695 Msa1165110:three_prime_UTR 35.0%
ACTGGAATTAGTGTGGTTAT+CGG + chr7_4:56961797-56961816 None:intergenic 35.0%
GATATATCTTGCAATGGCAA+AGG + chr7_4:56962103-56962122 None:intergenic 35.0%
TGCCATTGCAAGATATATCA+TGG - chr7_4:56962104-56962123 Msa1165110:intron 35.0%
TGTGGACGTAACAAATCAAA+CGG + chr7_4:56962145-56962164 None:intergenic 35.0%
CACATACATCTAAACATGCA+TGG + chr7_4:56962244-56962263 None:intergenic 35.0%
ACATGTCTAAGGAAACTTCT+GGG - chr7_4:56962338-56962357 Msa1165110:CDS 35.0%
TGATGAATCAAAGCCATCTA+AGG - chr7_4:56962369-56962388 Msa1165110:intron 35.0%
! AAGCCATCTAAGGATACTTT+TGG - chr7_4:56962379-56962398 Msa1165110:intron 35.0%
!! CTACCAAAAGTATCCTTAGA+TGG + chr7_4:56962385-56962404 None:intergenic 35.0%
GAAAAGGTAGAAAAACCTTG+TGG + chr7_4:56962466-56962485 None:intergenic 35.0%
!!! CTCTTTTGAGATTATGCTGA+TGG - chr7_4:56962513-56962532 Msa1165110:intron 35.0%
TTGAGATTATGCTGATGGTT+TGG - chr7_4:56962518-56962537 Msa1165110:intron 35.0%
!! GATTTCTATGGTTTTGCTAC+AGG - chr7_4:56962556-56962575 Msa1165110:intron 35.0%
CATGAAAATCAACGACAACA+TGG + chr7_4:56962639-56962658 None:intergenic 35.0%
!!! CATGTTGTCGTTGATTTTCA+TGG - chr7_4:56962637-56962656 Msa1165110:intron 35.0%
!! GTTGATTTTCATGGCACAAA+AGG - chr7_4:56962646-56962665 Msa1165110:intron 35.0%
GAAGGTTTGTGTTCAAGAAA+GGG - chr7_4:56962681-56962700 Msa1165110:intron 35.0%
AGTTCTCTGTGATGTAAATG+TGG - chr7_4:56962767-56962786 Msa1165110:intron 35.0%
! TGCAAACGAAACATGCTTTT+GGG + chr7_4:56962816-56962835 None:intergenic 35.0%
! ATGCAAACGAAACATGCTTT+TGG + chr7_4:56962817-56962836 None:intergenic 35.0%
CTTTGTATGACTCAAAGCTA+GGG - chr7_4:56962926-56962945 Msa1165110:intron 35.0%
GTACTTTCTGAGTCATGATT+TGG - chr7_4:56962975-56962994 Msa1165110:intron 35.0%
TGATCCATTCCCAACAAAAT+AGG - chr7_4:56963006-56963025 Msa1165110:intron 35.0%
GATCCATTCCCAACAAAATA+GGG - chr7_4:56963007-56963026 Msa1165110:intron 35.0%
! AAGCAATGCCCTATTTTGTT+GGG + chr7_4:56963018-56963037 None:intergenic 35.0%
! TAAGCAATGCCCTATTTTGT+TGG + chr7_4:56963019-56963038 None:intergenic 35.0%
! TCGTTTTCATTCAGTTCTGT+AGG + chr7_4:56963061-56963080 None:intergenic 35.0%
ACTGTAACAACCAAACCTTT+AGG - chr7_4:56963141-56963160 Msa1165110:intron 35.0%
AGTTCAACTGTTAGGGTAAA+AGG + chr7_4:56963291-56963310 None:intergenic 35.0%
AAAAGTGAATGTGGAAAGGA+AGG + chr7_4:56963367-56963386 None:intergenic 35.0%
GCTAAATGAGCTACTATACA+AGG + chr7_4:56963542-56963561 None:intergenic 35.0%
ATAGTAGCTCATTTAGCTGT+AGG - chr7_4:56963545-56963564 Msa1165110:intron 35.0%
! ATTGAAGTCACTTTGCAAGA+TGG - chr7_4:56963944-56963963 Msa1165110:intron 35.0%
!! ATCCCAAATCACTGCTTTTA+CGG + chr7_4:56964329-56964348 None:intergenic 35.0%
ATCTACTTGGGTAGTTTATG+CGG + chr7_4:56964425-56964444 None:intergenic 35.0%
ACCCAAGTAGATATGGAATA+TGG - chr7_4:56964433-56964452 Msa1165110:intron 35.0%
TTGCATGTTATCTGCTTGTA+TGG - chr7_4:56964482-56964501 Msa1165110:intron 35.0%
! AGTGAACATCATGAAAGTGT+TGG - chr7_4:56964557-56964576 Msa1165110:intron 35.0%
! ATTTTACACACAGAGTCGAT+TGG + chr7_4:56964609-56964628 None:intergenic 35.0%
AAGAAAAGTGGGTATGTTTC+TGG - chr7_4:56964642-56964661 Msa1165110:intron 35.0%
GCCTAATTAAACTTTCTGCT+TGG + chr7_4:56964779-56964798 None:intergenic 35.0%
!! TTCTTTTCAGGAGAGTGATA+CGG - chr7_4:56964932-56964951 Msa1165110:intron 35.0%
GAATGCCCTTATTGACATTA+GGG + chr7_4:56965032-56965051 None:intergenic 35.0%
AGAATGCCCTTATTGACATT+AGG + chr7_4:56965033-56965052 None:intergenic 35.0%
!! TGCTTTCTTTTGCTATGCTT+TGG - chr7_4:56965238-56965257 Msa1165110:intron 35.0%
TAATCAGAAAGAGGAGTAAG+GGG + chr7_4:56965634-56965653 None:intergenic 35.0%
CTAATCAGAAAGAGGAGTAA+GGG + chr7_4:56965635-56965654 None:intergenic 35.0%
TCTAATCAGAAAGAGGAGTA+AGG + chr7_4:56965636-56965655 None:intergenic 35.0%
TACACAAAACATAAGCGGAA+TGG + chr7_4:56965682-56965701 None:intergenic 35.0%
GAGCAACACAATGCATATTA+TGG + chr7_4:56965781-56965800 None:intergenic 35.0%
!! TTTTTGACTAGGTAACTCCT+GGG - chr7_4:56965862-56965881 Msa1165110:CDS 35.0%
AATTCAATGACAACATCACC+AGG + chr7_4:56965915-56965934 None:intergenic 35.0%
GTTGCAGGTTATTGAAATGA+TGG - chr7_4:56966294-56966313 Msa1165110:intron 35.0%
!! AAATGATGGTGGACAAAGTT+GGG - chr7_4:56966308-56966327 Msa1165110:intron 35.0%
! CAAGTTCTAATGTGAACAAG+TGG - chr7_4:56966476-56966495 Msa1165110:CDS 35.0%
!!! GCACAAGTTTTTTTAACCTC+TGG - chr7_4:56966516-56966535 Msa1165110:CDS 35.0%
ATTGCTCACTGGAATTAGTG+TGG + chr7_4:56961804-56961823 None:intergenic 40.0%
TGGACGTAACAAATCAAACG+GGG + chr7_4:56962143-56962162 None:intergenic 40.0%
GTGGACGTAACAAATCAAAC+GGG + chr7_4:56962144-56962163 None:intergenic 40.0%
AGAAAGAGGACAAACCATGT+TGG + chr7_4:56962183-56962202 None:intergenic 40.0%
! AACATGGTTTGTCCTCTTTC+TGG - chr7_4:56962182-56962201 Msa1165110:intron 40.0%
GACATGTCTAAGGAAACTTC+TGG - chr7_4:56962337-56962356 Msa1165110:CDS 40.0%
CATGTCTAAGGAAACTTCTG+GGG - chr7_4:56962339-56962358 Msa1165110:CDS 40.0%
ATGTCTAAGGAAACTTCTGG+GGG - chr7_4:56962340-56962359 Msa1165110:CDS 40.0%
! ATGCTGATGGTTTGGAGTAT+TGG - chr7_4:56962526-56962545 Msa1165110:intron 40.0%
! TTTGCTACAGGGAAGAGTAT+TGG - chr7_4:56962568-56962587 Msa1165110:intron 40.0%
GCACAAAAGGTTCATCCAAA+GGG - chr7_4:56962659-56962678 Msa1165110:intron 40.0%
AAAAGGTTCATCCAAAGGGA+AGG - chr7_4:56962663-56962682 Msa1165110:intron 40.0%
TTGAACACAAACCTTCCCTT+TGG + chr7_4:56962677-56962696 None:intergenic 40.0%
GGAAGGTTTGTGTTCAAGAA+AGG - chr7_4:56962680-56962699 Msa1165110:intron 40.0%
! ATGTGGTAGAAGAGTACAGT+TGG - chr7_4:56962784-56962803 Msa1165110:intron 40.0%
GCTTTGTATGACTCAAAGCT+AGG - chr7_4:56962925-56962944 Msa1165110:intron 40.0%
! ATGCCCTATTTTGTTGGGAA+TGG + chr7_4:56963013-56963032 None:intergenic 40.0%
AACGACGATTCTGTGAATTC+TGG - chr7_4:56963076-56963095 Msa1165110:intron 40.0%
AACAACCAAACCTTTAGGTG+AGG - chr7_4:56963146-56963165 Msa1165110:intron 40.0%
ATGTAGTTGACCTCACCTAA+AGG + chr7_4:56963159-56963178 None:intergenic 40.0%
ATCTAAATCCCTGCTAACGT+TGG - chr7_4:56963243-56963262 Msa1165110:CDS 40.0%
GACAGCAAAAAGGCAAAATG+AGG + chr7_4:56963457-56963476 None:intergenic 40.0%
CTGAAAACTCGACAGCAAAA+AGG + chr7_4:56963467-56963486 None:intergenic 40.0%
!! TTGTATAGTAGCTTGCTTGC+CGG - chr7_4:56963627-56963646 Msa1165110:CDS 40.0%
TCTGATGTCTTCATTTCACG+AGG + chr7_4:56963796-56963815 None:intergenic 40.0%
TCTGATGTCTTCATTTCACG+AGG + chr7_4:56963796-56963815 None:intergenic 40.0%
! AAGTCACTTTGCAAGATGGA+AGG - chr7_4:56963948-56963967 Msa1165110:intron 40.0%
CAAGATGGAAGGACATTTGA+GGG - chr7_4:56963959-56963978 Msa1165110:intron 40.0%
AAGATGGAAGGACATTTGAG+GGG - chr7_4:56963960-56963979 Msa1165110:intron 40.0%
!! AAATTCTGAAACCCCACTTC+CGG - chr7_4:56964030-56964049 Msa1165110:intron 40.0%
! CAAAGCTTGGTTCTTCAACT+AGG - chr7_4:56964056-56964075 Msa1165110:intron 40.0%
! ACAGTATTCTGAAGGGAATG+CGG + chr7_4:56964118-56964137 None:intergenic 40.0%
AGCAGTGACAGTATTCTGAA+GGG + chr7_4:56964125-56964144 None:intergenic 40.0%
GGTGCGAAGATAAAACTTTC+TGG - chr7_4:56964155-56964174 Msa1165110:CDS 40.0%
TGACCGTAAAAGCAGTGATT+TGG - chr7_4:56964323-56964342 Msa1165110:intron 40.0%
GACCGTAAAAGCAGTGATTT+GGG - chr7_4:56964324-56964343 Msa1165110:intron 40.0%
! AGCAGTGATTTGGGATTTAG+TGG - chr7_4:56964333-56964352 Msa1165110:intron 40.0%
TCTACTTGGGTAGTTTATGC+GGG + chr7_4:56964424-56964443 None:intergenic 40.0%
TTATCTGCTTGTATGGCACA+GGG - chr7_4:56964489-56964508 Msa1165110:intron 40.0%
TCTCCATCCATATTGACAAG+TGG + chr7_4:56964528-56964547 None:intergenic 40.0%
!! TAAGGGCATTCTTGTACCAA+TGG - chr7_4:56965041-56965060 Msa1165110:intron 40.0%
TTCACAGGACAGTATCTTCA+TGG - chr7_4:56965121-56965140 Msa1165110:intron 40.0%
TTGTGATAGTTACGTGTAGC+AGG - chr7_4:56965579-56965598 Msa1165110:CDS 40.0%
CACAATGCATATTATGGCAG+AGG + chr7_4:56965775-56965794 None:intergenic 40.0%
!! GTTTTTGACTAGGTAACTCC+TGG - chr7_4:56965861-56965880 Msa1165110:CDS 40.0%
GCAGGTTATTGAAATGATGG+TGG - chr7_4:56966297-56966316 Msa1165110:intron 40.0%
!! GAAATGATGGTGGACAAAGT+TGG - chr7_4:56966307-56966326 Msa1165110:intron 40.0%
!! AATGATGGTGGACAAAGTTG+GGG - chr7_4:56966309-56966328 Msa1165110:intron 40.0%
TGCGACTTTAAGTGTGATTC+CGG - chr7_4:56966372-56966391 Msa1165110:intron 40.0%
!! TTGATGGTGTACAACAAAGC+TGG + chr7_4:56966575-56966594 None:intergenic 40.0%
GTTGAGATCCTCTCCATTTA+GGG + chr7_4:56966648-56966667 None:intergenic 40.0%
TGGTCGAAAGACGACAAATG+TGG + chr7_4:56962163-56962182 None:intergenic 45.0%
TTGTCGTCTTTCGACCAACA+TGG - chr7_4:56962166-56962185 Msa1165110:intron 45.0%
AGTTAGCCCTGTTCCTTCTT+CGG - chr7_4:56962315-56962334 Msa1165110:CDS 45.0%
ACATGTCCGAAGAAGGAACA+GGG + chr7_4:56962324-56962343 None:intergenic 45.0%
TCCTTCTTCGGACATGTCTA+AGG - chr7_4:56962327-56962346 Msa1165110:CDS 45.0%
TCCTTAGACATGTCCGAAGA+AGG + chr7_4:56962331-56962350 None:intergenic 45.0%
GCAAATGCTGCTGCTAAAGT+TGG - chr7_4:56962415-56962434 Msa1165110:intron 45.0%
GGCACAAAAGGTTCATCCAA+AGG - chr7_4:56962658-56962677 Msa1165110:intron 45.0%
TGTATGACTCAAAGCTAGGG+TGG - chr7_4:56962929-56962948 Msa1165110:intron 45.0%
TAGGGTGGCTTAAGATCTGA+TGG - chr7_4:56962944-56962963 Msa1165110:intron 45.0%
AGGGTGGCTTAAGATCTGAT+GGG - chr7_4:56962945-56962964 Msa1165110:intron 45.0%
GTTGACCTCACCTAAAGGTT+TGG + chr7_4:56963154-56963173 None:intergenic 45.0%
CTCAAAGTCCAACGTTAGCA+GGG + chr7_4:56963254-56963273 None:intergenic 45.0%
ACTCAAAGTCCAACGTTAGC+AGG + chr7_4:56963255-56963274 None:intergenic 45.0%
AGTGAATGTGGAAAGGAAGG+AGG + chr7_4:56963364-56963383 None:intergenic 45.0%
! AGCTTGCTTGCCAGAACAAT+TGG - chr7_4:56963578-56963597 Msa1165110:intron 45.0%
GGCAAGCAAGCTACTATACA+AGG + chr7_4:56963628-56963647 None:intergenic 45.0%
GCAAGATGGAAGGACATTTG+AGG - chr7_4:56963958-56963977 Msa1165110:intron 45.0%
AAGGACATTTGAGGGGAAAG+TGG - chr7_4:56963967-56963986 Msa1165110:intron 45.0%
GAAGAACCAAGCTTTGCTTC+CGG + chr7_4:56964052-56964071 None:intergenic 45.0%
CAGCAGTGACAGTATTCTGA+AGG + chr7_4:56964126-56964145 None:intergenic 45.0%
CTTCAGAATACTGTCACTGC+TGG - chr7_4:56964124-56964143 Msa1165110:CDS 45.0%
CTGTCACTGCTGGTATTGTA+AGG - chr7_4:56964134-56964153 Msa1165110:CDS 45.0%
TGGCTGTAAAAGATGTCTCC+TGG - chr7_4:56964175-56964194 Msa1165110:CDS 45.0%
TGGGTAGTTTATGCGGGAAA+AGG + chr7_4:56964418-56964437 None:intergenic 45.0%
GTTATCTGCTTGTATGGCAC+AGG - chr7_4:56964488-56964507 Msa1165110:intron 45.0%
TGTATGGCACAGGGAAATTC+TGG - chr7_4:56964498-56964517 Msa1165110:intron 45.0%
!! ATGAAAGTGTTGGCTGCTGA+TGG - chr7_4:56964567-56964586 Msa1165110:intron 45.0%
!! TGAAAGTGTTGGCTGCTGAT+GGG - chr7_4:56964568-56964587 Msa1165110:intron 45.0%
ACACACAGAGTCGATTGGTA+CGG + chr7_4:56964604-56964623 None:intergenic 45.0%
AGCATTCTTAGTCCAAGCCA+TGG + chr7_4:56964958-56964977 None:intergenic 45.0%
TATGTTAGTGAAGCCATGGG+CGG - chr7_4:56965282-56965301 Msa1165110:intron 45.0%
! CATTGTGTTGCTCAAATGCG+AGG - chr7_4:56965788-56965807 Msa1165110:intron 45.0%
CAATGACAACATCACCAGGA+CGG + chr7_4:56965911-56965930 None:intergenic 45.0%
TGAATTTGATGGAAAGCCCG+TGG - chr7_4:56965929-56965948 Msa1165110:CDS 45.0%
TACCTCCTTCATGCTTTCCA+CGG + chr7_4:56965949-56965968 None:intergenic 45.0%
ATCTGGGGGAGCAAAACAAT+TGG - chr7_4:56966050-56966069 Msa1165110:intron 45.0%
GACTTTAAGTGTGATTCCGG+AGG - chr7_4:56966375-56966394 Msa1165110:intron 45.0%
AAGCTGAGATTGGATTCCTC+CGG + chr7_4:56966394-56966413 None:intergenic 45.0%
GGAATCCAATCTCAGCTTGT+AGG - chr7_4:56966396-56966415 Msa1165110:intron 45.0%
AGTCTCCTACAAGCTGAGAT+TGG + chr7_4:56966404-56966423 None:intergenic 45.0%
GGTTGAGATCCTCTCCATTT+AGG + chr7_4:56966649-56966668 None:intergenic 45.0%
TTGAACAGAAGCTCTGCCGT+TGG - chr7_4:56961730-56961749 Msa1165110:three_prime_UTR 50.0%
AACGATACCCACAGCTCCAA+CGG + chr7_4:56961749-56961768 None:intergenic 50.0%
TAGGAACGTTCGTACGTGTG+CGG - chr7_4:56962074-56962093 Msa1165110:intron 50.0%
GACATGTCCGAAGAAGGAAC+AGG + chr7_4:56962325-56962344 None:intergenic 50.0%
!! ACAGGGAAGAGTATTGGCTC+TGG - chr7_4:56962574-56962593 Msa1165110:intron 50.0%
! GAAGTGCTACTGTTCCTGCT+TGG - chr7_4:56962896-56962915 Msa1165110:intron 50.0%
TACTGTTCCTGCTTGGTCTG+TGG - chr7_4:56962903-56962922 Msa1165110:intron 50.0%
TACAAAGCCACAGACCAAGC+AGG + chr7_4:56962913-56962932 None:intergenic 50.0%
! AGCTTGCTTGCCGGATCAAT+TGG - chr7_4:56963636-56963655 Msa1165110:CDS 50.0%
AAGCTTTGCTTCCGGAAGTG+GGG + chr7_4:56964044-56964063 None:intergenic 50.0%
CAAGCTTTGCTTCCGGAAGT+GGG + chr7_4:56964045-56964064 None:intergenic 50.0%
TCTTCAACTAGGCTTCGTCC+CGG - chr7_4:56964067-56964086 Msa1165110:intron 50.0%
ATGGCTATTACCCAATCCCC+GGG + chr7_4:56964088-56964107 None:intergenic 50.0%
CATGGCTATTACCCAATCCC+CGG + chr7_4:56964089-56964108 None:intergenic 50.0%
GGGGATTGGGTAATAGCCAT+GGG - chr7_4:56964088-56964107 Msa1165110:intron 50.0%
ATGGCACAGGGAAATTCTGG+AGG - chr7_4:56964501-56964520 Msa1165110:intron 50.0%
TGGCACAGGGAAATTCTGGA+GGG - chr7_4:56964502-56964521 Msa1165110:intron 50.0%
TGGAGGGCCACTTGTCAATA+TGG - chr7_4:56964518-56964537 Msa1165110:intron 50.0%
GGGCCACTTGTCAATATGGA+TGG - chr7_4:56964522-56964541 Msa1165110:intron 50.0%
GTAGAAGTTTGAACCGCCCA+TGG + chr7_4:56965298-56965317 None:intergenic 50.0%
! AAAGCCCGTGGAAAGCATGA+AGG - chr7_4:56965941-56965960 Msa1165110:CDS 50.0%
ACCTCCTTCATGCTTTCCAC+GGG + chr7_4:56965948-56965967 None:intergenic 50.0%
! TTGGCGTTGAAGGAGTGAAC+GGG + chr7_4:56966622-56966641 None:intergenic 50.0%
! CTTGGCGTTGAAGGAGTGAA+CGG + chr7_4:56966623-56966642 None:intergenic 50.0%
GTTCACTCCTTCAACGCCAA+GGG - chr7_4:56966622-56966641 Msa1165110:intron 50.0%
! GCTGTGGGTATCGTTGCTGT+TGG - chr7_4:56961754-56961773 Msa1165110:three_prime_UTR 55.0%
CCAAGCTTTGCTTCCGGAAG+TGG + chr7_4:56964046-56964065 None:intergenic 55.0%
CCACTTCCGGAAGCAAAGCT+TGG - chr7_4:56964043-56964062 Msa1165110:intron 55.0%
CTTCAACTAGGCTTCGTCCC+GGG - chr7_4:56964068-56964087 Msa1165110:intron 55.0%
TTCAACTAGGCTTCGTCCCG+GGG - chr7_4:56964069-56964088 Msa1165110:intron 55.0%
CGGGGATTGGGTAATAGCCA+TGG - chr7_4:56964087-56964106 Msa1165110:intron 55.0%
AAGGGAATGCGGACAACCCA+TGG + chr7_4:56964107-56964126 None:intergenic 55.0%
!! AGTGTTGGCTGCTGATGGGT+TGG - chr7_4:56964572-56964591 Msa1165110:intron 55.0%
!! GTGTTGGCTGCTGATGGGTT+GGG - chr7_4:56964573-56964592 Msa1165110:intron 55.0%
TCAGGAGAGTGATACGGCCA+TGG - chr7_4:56964938-56964957 Msa1165110:intron 55.0%
AGAGTGATACGGCCATGGCT+TGG - chr7_4:56964943-56964962 Msa1165110:intron 55.0%
! CAAAGTTGGGGTGCCCATGA+AGG - chr7_4:56966321-56966340 Msa1165110:intron 55.0%
!! GGTCAAGTTGGTAGAGCCAG+AGG + chr7_4:56966535-56966554 None:intergenic 55.0%
AGGAGTGAACGGGAGGAAGA+GGG + chr7_4:56966612-56966631 None:intergenic 55.0%
AAGGAGTGAACGGGAGGAAG+AGG + chr7_4:56966613-56966632 None:intergenic 55.0%
CGTTCACTCCTTCAACGCCA+AGG - chr7_4:56966621-56966640 Msa1165110:intron 55.0%
! TTTAGGGCCCTTGGCGTTGA+AGG + chr7_4:56966632-56966651 None:intergenic 55.0%
TCAACGCCAAGGGCCCTAAA+TGG - chr7_4:56966632-56966651 Msa1165110:exon 55.0%
! TCCTCTCCATTTAGGGCCCT+TGG + chr7_4:56966641-56966660 None:intergenic 55.0%
AAGCTCTGCCGTTGGAGCTG+TGG - chr7_4:56961738-56961757 Msa1165110:three_prime_UTR 60.0%
AGCTCTGCCGTTGGAGCTGT+GGG - chr7_4:56961739-56961758 Msa1165110:three_prime_UTR 60.0%
TAGGCTTCGTCCCGGGGATT+GGG - chr7_4:56964075-56964094 Msa1165110:intron 60.0%
TAGGTAACTCCTGGGTCCCC+TGG - chr7_4:56965870-56965889 Msa1165110:CDS 60.0%
GAACCCAGCACGATCACCAG+GGG + chr7_4:56965889-56965908 None:intergenic 60.0%
GGAACCCAGCACGATCACCA+GGG + chr7_4:56965890-56965909 None:intergenic 60.0%
! GCCCGTGGAAAGCATGAAGG+AGG - chr7_4:56965944-56965963 Msa1165110:CDS 60.0%
GCGTTGAAGGAGTGAACGGG+AGG + chr7_4:56966619-56966638 None:intergenic 60.0%
GCCAAGGGCCCTAAATGGAG+AGG - chr7_4:56966637-56966656 Msa1165110:exon 60.0%
CTAGGCTTCGTCCCGGGGAT+TGG - chr7_4:56964074-56964093 Msa1165110:intron 65.0%
GGTCCCCTGGTGATCGTGCT+GGG - chr7_4:56965883-56965902 Msa1165110:CDS 65.0%
CGGAACCCAGCACGATCACC+AGG + chr7_4:56965891-56965910 None:intergenic 65.0%
GATCGTGCTGGGTTCCGTCC+TGG - chr7_4:56965894-56965913 Msa1165110:CDS 65.0%
GCACGATCACCAGGGGACCC+AGG + chr7_4:56965882-56965901 None:intergenic 70.0%
GGGTCCCCTGGTGATCGTGC+TGG - chr7_4:56965882-56965901 Msa1165110:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 56961541 56966717 56961541 ID=Msa1165110;Name=Msa1165110
chr7_4 mRNA 56961541 56966717 56961541 ID=Msa1165110-mRNA-1;Parent=Msa1165110;Name=Msa1165110-mRNA-1;_AED=0.23;_eAED=0.23;_QI=72|1|1|1|0.8|0.72|11|300|433
chr7_4 exon 56961541 56961957 56961541 ID=Msa1165110-mRNA-1:exon:17088;Parent=Msa1165110-mRNA-1
chr7_4 exon 56962293 56962385 56962293 ID=Msa1165110-mRNA-1:exon:17087;Parent=Msa1165110-mRNA-1
chr7_4 exon 56963196 56963316 56963196 ID=Msa1165110-mRNA-1:exon:17086;Parent=Msa1165110-mRNA-1
chr7_4 exon 56963606 56963748 56963606 ID=Msa1165110-mRNA-1:exon:17085;Parent=Msa1165110-mRNA-1
chr7_4 exon 56963860 56963941 56963860 ID=Msa1165110-mRNA-1:exon:17084;Parent=Msa1165110-mRNA-1
chr7_4 exon 56964103 56964314 56964103 ID=Msa1165110-mRNA-1:exon:17083;Parent=Msa1165110-mRNA-1
chr7_4 exon 56965574 56965701 56965574 ID=Msa1165110-mRNA-1:exon:17082;Parent=Msa1165110-mRNA-1
chr7_4 exon 56965789 56965968 56965789 ID=Msa1165110-mRNA-1:exon:17081;Parent=Msa1165110-mRNA-1
chr7_4 exon 56966071 56966181 56966071 ID=Msa1165110-mRNA-1:exon:17080;Parent=Msa1165110-mRNA-1
chr7_4 exon 56966444 56966543 56966444 ID=Msa1165110-mRNA-1:exon:17079;Parent=Msa1165110-mRNA-1
chr7_4 exon 56966631 56966717 56966631 ID=Msa1165110-mRNA-1:exon:17078;Parent=Msa1165110-mRNA-1
chr7_4 five_prime_UTR 56966646 56966717 56966646 ID=Msa1165110-mRNA-1:five_prime_utr;Parent=Msa1165110-mRNA-1
chr7_4 CDS 56966631 56966645 56966631 ID=Msa1165110-mRNA-1:cds;Parent=Msa1165110-mRNA-1
chr7_4 CDS 56966444 56966543 56966444 ID=Msa1165110-mRNA-1:cds;Parent=Msa1165110-mRNA-1
chr7_4 CDS 56966071 56966181 56966071 ID=Msa1165110-mRNA-1:cds;Parent=Msa1165110-mRNA-1
chr7_4 CDS 56965789 56965968 56965789 ID=Msa1165110-mRNA-1:cds;Parent=Msa1165110-mRNA-1
chr7_4 CDS 56965574 56965701 56965574 ID=Msa1165110-mRNA-1:cds;Parent=Msa1165110-mRNA-1
chr7_4 CDS 56964103 56964314 56964103 ID=Msa1165110-mRNA-1:cds;Parent=Msa1165110-mRNA-1
chr7_4 CDS 56963860 56963941 56963860 ID=Msa1165110-mRNA-1:cds;Parent=Msa1165110-mRNA-1
chr7_4 CDS 56963606 56963748 56963606 ID=Msa1165110-mRNA-1:cds;Parent=Msa1165110-mRNA-1
chr7_4 CDS 56963196 56963316 56963196 ID=Msa1165110-mRNA-1:cds;Parent=Msa1165110-mRNA-1
chr7_4 CDS 56962293 56962385 56962293 ID=Msa1165110-mRNA-1:cds;Parent=Msa1165110-mRNA-1
chr7_4 CDS 56961841 56961957 56961841 ID=Msa1165110-mRNA-1:cds;Parent=Msa1165110-mRNA-1
chr7_4 three_prime_UTR 56961541 56961840 56961541 ID=Msa1165110-mRNA-1:three_prime_utr;Parent=Msa1165110-mRNA-1
Gene Sequence

>Msa1165110

ATGAGTTATTTCCTGAGTAAACTTCTGCGTTTGAACAGAAGCTCTGCCGTTGGAGCTGTGGGTATCGTTGCTGTTGGTTCAACTCTACTCTGTTCCGATAACCACACTAATTCCAGAACGTTCGTACGTGTGCGGATTCCTTTGCCATTGCAAGATATATCATGGTTGACATTGGCAACCCCGTTTGATTTGTTACGTCCACATTTGTCGTCTTTCGACCAACATGGGATTCTCGCGCTGTCTTCTTATAGAGTTAGCCCTGTTCCTTCTTCGGACATGTCTAAGGAAACTTCTGGGGGTGTTAATGATGAATCAAAGCCATCTAAGGATACTTTTGGTAGAGACACTATTGCAAATGCTGCTGCTAAAGTTGGTCCTGCTGTTGTTAATATTTCGATTCCACAAGATTTCTATGGTTTTGCTACAGGGAAGAGTATTGGCTCTGGAACAATCATTAACAAAGATGGTACAATCTTGACATGTGCCCATGTTGTCGTTGATTTTCATGGCACAAAAGGTTCATCCAAAGGGAAGATTGAAGTCACTTTGCAAGATGGAAGGACATTTGAGGGGAAAGTGGTGAATGCTGACATGCATTCAGATATTGCTGTTGTGAAGATAAATTCTGAAACCCCACTTCCGGAAGCAAAGCTTGGTTCTTCAACTAGGCTTCGTCCCGGGGATTGGGTAATAGCCATGGGTTGTCCGCATTCCCTTCAGAATACTGTCACTGCTGGTATTGTAAGTTGCGTTGACCGTAAAAGCAGTGATTTGGGATTTAGTGGCTCGCCCAGAGAGTATTTACAAACAGATTGTGCAATTAATGTGGGAAATTCTGGAGGGCCACTTGTCAATATGGATGGAGAAATTGTTGGAGTGAACATCATGAAAGTGTTGGCTGCTGATGGGTTGGGTTTTTCCGTACCAATCGACTCTGTGTGTAAAATTATAGAGCATTTCAAGAAAAGTGGGAGAGTGATACGGCCATGGCTTGGACTAAGAATGCTTGATCTAAATGAGATGATTATTGAGCAGCTTAAAAAGAAAGATGCTTCATTCCCTAATGTCAATAAGGGCATTCTTGTACCAATGGTAACTCCTGGGTCCCCTGGTGATCGTGCTGGGTTCCGTCCTGGTGATGTTGTCATTGAATTTGATGGAAAGCCCGTGGAAAGCATGAAGGAGGTTATTGAAATGATGGTGGACAAAGTTGGGGTGCCCATGAAGGTTGTAGTTAAAAGAGCGAATGATAAGTTTGCGACTTTAAGTGTGATTCCGGAGGAATCCAATCTCAGCTTGTAG

Protein sequence

>Msa1165110

MSYFLSKLLRLNRSSAVGAVGIVAVGSTLLCSDNHTNSRTFVRVRIPLPLQDISWLTLATPFDLLRPHLSSFDQHGILALSSYRVSPVPSSDMSKETSGGVNDESKPSKDTFGRDTIANAAAKVGPAVVNISIPQDFYGFATGKSIGSGTIINKDGTILTCAHVVVDFHGTKGSSKGKIEVTLQDGRTFEGKVVNADMHSDIAVVKINSETPLPEAKLGSSTRLRPGDWVIAMGCPHSLQNTVTAGIVSCVDRKSSDLGFSGSPREYLQTDCAINVGNSGGPLVNMDGEIVGVNIMKVLAADGLGFSVPIDSVCKIIEHFKKSGRVIRPWLGLRMLDLNEMIIEQLKKKDASFPNVNKGILVPMVTPGSPGDRAGFRPGDVVIEFDGKPVESMKEVIEMMVDKVGVPMKVVVKRANDKFATLSVIPEESNLSL*