Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1165110 | XP_003626259.1 | 96.767 | 433 | 14 | 0 | 1 | 433 | 1 | 433 | 0.0 | 848 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1165110 | sp|Q3E6S8|DGP14_ARATH | 60.412 | 437 | 154 | 6 | 1 | 430 | 2 | 426 | 6.25e-180 | 511 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1165110 | A2Q336 | 96.767 | 433 | 14 | 0 | 1 | 433 | 1 | 433 | 0.0 | 848 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0047030 | Msa1165110 | 0.800643 | 1.308955e-48 | -8.615850e-47 |
Msa0806790 | Msa1165110 | 0.805875 | 1.080779e-49 | -8.615850e-47 |
Msa0428150 | Msa1165110 | 0.830181 | 3.393325e-55 | -8.615850e-47 |
Msa0462500 | Msa1165110 | 0.825236 | 5.231415e-54 | -8.615850e-47 |
Msa1039370 | Msa1165110 | 0.884573 | 1.708219e-71 | -8.615850e-47 |
Msa1084960 | Msa1165110 | 0.800740 | 1.250664e-48 | -8.615850e-47 |
Msa1165110 | Msa1373150 | 0.940278 | 3.067261e-100 | -8.615850e-47 |
Msa0525900 | Msa1165110 | 0.994072 | 2.360712e-204 | -8.615850e-47 |
Msa0938480 | Msa1165110 | 0.806180 | 9.324340e-50 | -8.615850e-47 |
Msa0945110 | Msa1165110 | 0.801324 | 9.499270e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1165110 | MtrunA17_Chr7g0272621 | 96.767 | 433 | 14 | 0 | 1 | 433 | 1 | 433 | 0.0 | 848 |
Msa1165110 | MtrunA17_Chr6g0450671 | 30.293 | 307 | 170 | 10 | 128 | 413 | 128 | 411 | 4.00e-32 | 126 |
Msa1165110 | MtrunA17_Chr6g0453121 | 28.571 | 308 | 182 | 10 | 147 | 430 | 165 | 458 | 3.54e-30 | 121 |
Msa1165110 | MtrunA17_Chr2g0285791 | 35.519 | 183 | 108 | 5 | 147 | 320 | 133 | 314 | 2.37e-22 | 97.1 |
Msa1165110 | MtrunA17_Chr5g0426331 | 27.143 | 280 | 159 | 7 | 167 | 415 | 137 | 402 | 3.47e-19 | 89.4 |
Msa1165110 | MtrunA17_Chr5g0426381 | 35.135 | 111 | 71 | 1 | 308 | 417 | 1 | 111 | 2.59e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1165110 | AT5G27660.2 | 61.327 | 437 | 156 | 5 | 1 | 430 | 2 | 432 | 0.0 | 527 |
Msa1165110 | AT5G27660.1 | 61.882 | 425 | 143 | 6 | 13 | 430 | 9 | 421 | 1.70e-180 | 510 |
Msa1165110 | AT3G27925.1 | 31.193 | 327 | 178 | 11 | 128 | 429 | 135 | 439 | 9.02e-34 | 131 |
Msa1165110 | AT3G27925.2 | 31.193 | 327 | 178 | 11 | 128 | 429 | 135 | 439 | 9.02e-34 | 131 |
Msa1165110 | AT5G39830.1 | 29.545 | 308 | 179 | 10 | 147 | 430 | 155 | 448 | 4.45e-31 | 124 |
Msa1165110 | AT5G39830.2 | 28.525 | 305 | 172 | 10 | 147 | 430 | 155 | 434 | 9.24e-27 | 112 |
Msa1165110 | AT4G18370.1 | 36.458 | 192 | 110 | 6 | 147 | 328 | 131 | 320 | 2.07e-21 | 94.7 |
Find 150 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTTGAGATCCTCTCCATTT+AGG | 0.184232 | 7_4:+56961590 | None:intergenic |
CGTTGAAGAGTGTAGAATTT+TGG | 0.246728 | 7_4:-56966660 | Msa1165110:five_prime_UTR |
GTTGAGATCCTCTCCATTTA+GGG | 0.246868 | 7_4:+56961591 | None:intergenic |
TTCATTCCCTAATGTCAATA+AGG | 0.269170 | 7_4:-56963213 | Msa1165110:CDS |
TGTATGGCACAGGGAAATTC+TGG | 0.299439 | 7_4:-56963738 | Msa1165110:intron |
TCCTTCTTCGGACATGTCTA+AGG | 0.309122 | 7_4:-56965909 | Msa1165110:CDS |
ATTGGCTTTGTAGATTTCTA+TGG | 0.309418 | 7_4:-56965692 | Msa1165110:intron |
TGGAGGGCCACTTGTCAATA+TGG | 0.315113 | 7_4:-56963718 | Msa1165110:CDS |
TCAACGCCAAGGGCCCTAAA+TGG | 0.323892 | 7_4:-56961604 | Msa1165110:three_prime_UTR |
CTAGGCTTCGTCCCGGGGAT+TGG | 0.328014 | 7_4:-56964162 | Msa1165110:CDS |
TGACCGTAAAAGCAGTGATT+TGG | 0.333135 | 7_4:-56963913 | Msa1165110:CDS |
TGCGACTTTAAGTGTGATTC+CGG | 0.337225 | 7_4:-56961864 | Msa1165110:CDS |
AGAATGCCCTTATTGACATT+AGG | 0.346180 | 7_4:+56963206 | None:intergenic |
ATCTATCATGAGTTATTTCC+TGG | 0.355463 | 7_4:-56966630 | Msa1165110:intron |
GGGTCCCCTGGTGATCGTGC+TGG | 0.357975 | 7_4:-56962354 | Msa1165110:CDS |
GAATGCCCTTATTGACATTA+GGG | 0.359755 | 7_4:+56963207 | None:intergenic |
AAGCCATCTAAGGATACTTT+TGG | 0.364970 | 7_4:-56965857 | Msa1165110:CDS |
GACCGTAAAAGCAGTGATTT+GGG | 0.371160 | 7_4:-56963912 | Msa1165110:CDS |
GACATGTCTAAGGAAACTTC+TGG | 0.371904 | 7_4:-56965899 | Msa1165110:CDS |
ATCTGTTTGTAAATACTCTC+TGG | 0.378364 | 7_4:+56963875 | None:intergenic |
TGATGAATCAAAGCCATCTA+AGG | 0.379781 | 7_4:-56965867 | Msa1165110:CDS |
AGCAGTGATTTGGGATTTAG+TGG | 0.380979 | 7_4:-56963903 | Msa1165110:CDS |
ATGTGAACAAGTGGTATATT+TGG | 0.386975 | 7_4:-56961751 | Msa1165110:three_prime_UTR |
GATGTTGTCATTGAATTTGA+TGG | 0.389841 | 7_4:-56962318 | Msa1165110:CDS |
AAGGAGTGAACGGGAGGAAG+AGG | 0.389975 | 7_4:+56961626 | None:intergenic |
AGTTAGCCCTGTTCCTTCTT+CGG | 0.392277 | 7_4:-56965921 | Msa1165110:CDS |
TTGAACACAAACCTTCCCTT+TGG | 0.396372 | 7_4:+56965562 | None:intergenic |
AAATGATGGTGGACAAAGTT+GGG | 0.397529 | 7_4:-56961928 | Msa1165110:CDS |
TAGGCTTCGTCCCGGGGATT+GGG | 0.404252 | 7_4:-56964161 | Msa1165110:CDS |
CAAAGCTTGGTTCTTCAACT+AGG | 0.415056 | 7_4:-56964180 | Msa1165110:CDS |
TCCTCTCCATTTAGGGCCCT+TGG | 0.417772 | 7_4:+56961598 | None:intergenic |
CCAAGCTTTGCTTCCGGAAG+TGG | 0.420101 | 7_4:+56964193 | None:intergenic |
AAATTCTGAAACCCCACTTC+CGG | 0.423531 | 7_4:-56964206 | Msa1165110:CDS |
CAAGATGGAAGGACATTTGA+GGG | 0.423591 | 7_4:-56964277 | Msa1165110:CDS |
TTTAGGGCCCTTGGCGTTGA+AGG | 0.425402 | 7_4:+56961607 | None:intergenic |
CTTCAACTAGGCTTCGTCCC+GGG | 0.427401 | 7_4:-56964168 | Msa1165110:CDS |
CGGAACCCAGCACGATCACC+AGG | 0.431496 | 7_4:+56962348 | None:intergenic |
TGCCATTGCAAGATATATCA+TGG | 0.437451 | 7_4:-56966132 | Msa1165110:CDS |
CTACCAAAAGTATCCTTAGA+TGG | 0.439534 | 7_4:+56965854 | None:intergenic |
TCATTCCCTAATGTCAATAA+GGG | 0.444524 | 7_4:-56963212 | Msa1165110:CDS |
GGAATCCAATCTCAGCTTGT+AGG | 0.450834 | 7_4:-56961840 | Msa1165110:exon |
AACTAATGACTAAAGTGAAC+GGG | 0.452413 | 7_4:+56961569 | None:intergenic |
AGTCTCCTACAAGCTGAGAT+TGG | 0.457251 | 7_4:+56961835 | None:intergenic |
GGTCCCCTGGTGATCGTGCT+GGG | 0.461837 | 7_4:-56962353 | Msa1165110:CDS |
ACTGGAATTAGTGTGGTTAT+CGG | 0.462039 | 7_4:+56966442 | None:intergenic |
ACATGTCTAAGGAAACTTCT+GGG | 0.469601 | 7_4:-56965898 | Msa1165110:CDS |
GAAGAACCAAGCTTTGCTTC+CGG | 0.472595 | 7_4:+56964187 | None:intergenic |
GTGGACGTAACAAATCAAAC+GGG | 0.472824 | 7_4:+56966095 | None:intergenic |
TTTGCTACAGGGAAGAGTAT+TGG | 0.475530 | 7_4:-56965668 | Msa1165110:CDS |
GTTGCAGGTTATTGAAATGA+TGG | 0.475950 | 7_4:-56961942 | Msa1165110:intron |
TAGGTAACTCCTGGGTCCCC+TGG | 0.475953 | 7_4:-56962366 | Msa1165110:CDS |
AGTGTTGGCTGCTGATGGGT+TGG | 0.476294 | 7_4:-56963664 | Msa1165110:CDS |
AGGAGTGAACGGGAGGAAGA+GGG | 0.476400 | 7_4:+56961627 | None:intergenic |
TCCTTAGACATGTCCGAAGA+AGG | 0.477491 | 7_4:+56965908 | None:intergenic |
ATAGAGCATTTCAAGAAAAG+TGG | 0.478194 | 7_4:-56963606 | Msa1165110:CDS |
TGTGGACGTAACAAATCAAA+CGG | 0.478244 | 7_4:+56966094 | None:intergenic |
GTGTTGGCTGCTGATGGGTT+GGG | 0.482417 | 7_4:-56963663 | Msa1165110:CDS |
GACATGTCCGAAGAAGGAAC+AGG | 0.489693 | 7_4:+56965914 | None:intergenic |
TACCTCCTTCATGCTTTCCA+CGG | 0.491263 | 7_4:+56962290 | None:intergenic |
CAAGCTTTGCTTCCGGAAGT+GGG | 0.491393 | 7_4:+56964194 | None:intergenic |
AGCTCTGCCGTTGGAGCTGT+GGG | 0.496151 | 7_4:-56966497 | Msa1165110:CDS |
GATCGTGCTGGGTTCCGTCC+TGG | 0.498642 | 7_4:-56962342 | Msa1165110:CDS |
TTGGCGTTGAAGGAGTGAAC+GGG | 0.499034 | 7_4:+56961617 | None:intergenic |
GCAAGATGGAAGGACATTTG+AGG | 0.500220 | 7_4:-56964278 | Msa1165110:CDS |
ATTGAAGTCACTTTGCAAGA+TGG | 0.504105 | 7_4:-56964292 | Msa1165110:CDS |
CGGGGATTGGGTAATAGCCA+TGG | 0.506433 | 7_4:-56964149 | Msa1165110:CDS |
ATCGAAATATTAACAACAGC+AGG | 0.506520 | 7_4:+56965797 | None:intergenic |
CCACTTCCGGAAGCAAAGCT+TGG | 0.510741 | 7_4:-56964193 | Msa1165110:CDS |
AAGGACATTTGAGGGGAAAG+TGG | 0.512120 | 7_4:-56964269 | Msa1165110:CDS |
AGAGTGATACGGCCATGGCT+TGG | 0.514213 | 7_4:-56963293 | Msa1165110:CDS |
GGAACAATCATTAACAAAGA+TGG | 0.515974 | 7_4:-56965641 | Msa1165110:CDS |
ATGAAAGTGTTGGCTGCTGA+TGG | 0.519245 | 7_4:-56963669 | Msa1165110:CDS |
TTCAACTAGGCTTCGTCCCG+GGG | 0.519860 | 7_4:-56964167 | Msa1165110:CDS |
AAGCTCTGCCGTTGGAGCTG+TGG | 0.521174 | 7_4:-56966498 | Msa1165110:CDS |
GCAAATGCTGCTGCTAAAGT+TGG | 0.521599 | 7_4:-56965821 | Msa1165110:CDS |
CGTTCACTCCTTCAACGCCA+AGG | 0.524270 | 7_4:-56961615 | Msa1165110:three_prime_UTR |
GAAATGATGGTGGACAAAGT+TGG | 0.526009 | 7_4:-56961929 | Msa1165110:CDS |
ACCTCCTTCATGCTTTCCAC+GGG | 0.531605 | 7_4:+56962291 | None:intergenic |
GCACAAAAGGTTCATCCAAA+GGG | 0.534147 | 7_4:-56965577 | Msa1165110:CDS |
CATGAAAATCAACGACAACA+TGG | 0.539853 | 7_4:+56965600 | None:intergenic |
TCTTCAACTAGGCTTCGTCC+CGG | 0.539957 | 7_4:-56964169 | Msa1165110:CDS |
TCAGGAGAGTGATACGGCCA+TGG | 0.540162 | 7_4:-56963298 | Msa1165110:intron |
ACAGGGAAGAGTATTGGCTC+TGG | 0.541432 | 7_4:-56965662 | Msa1165110:CDS |
CTGTCACTGCTGGTATTGTA+AGG | 0.545354 | 7_4:-56964102 | Msa1165110:intron |
CATGGCTATTACCCAATCCC+CGG | 0.547015 | 7_4:+56964150 | None:intergenic |
AAGGGAATGCGGACAACCCA+TGG | 0.551296 | 7_4:+56964132 | None:intergenic |
GGCACAAAAGGTTCATCCAA+AGG | 0.554675 | 7_4:-56965578 | Msa1165110:CDS |
TAAGGGCATTCTTGTACCAA+TGG | 0.554993 | 7_4:-56963195 | Msa1165110:intron |
TTGAACAGAAGCTCTGCCGT+TGG | 0.555512 | 7_4:-56966506 | Msa1165110:CDS |
GGGCCACTTGTCAATATGGA+TGG | 0.558327 | 7_4:-56963714 | Msa1165110:CDS |
GTTCACTCCTTCAACGCCAA+GGG | 0.561597 | 7_4:-56961614 | Msa1165110:three_prime_UTR |
CTTCAGAATACTGTCACTGC+TGG | 0.562372 | 7_4:-56964112 | Msa1165110:CDS |
TAGAGCATTTCAAGAAAAGT+GGG | 0.563537 | 7_4:-56963605 | Msa1165110:intron |
ACACACAGAGTCGATTGGTA+CGG | 0.565045 | 7_4:+56963635 | None:intergenic |
AGATATATCATGGTTGACAT+TGG | 0.565755 | 7_4:-56966122 | Msa1165110:CDS |
AACCATGATATATCTTGCAA+TGG | 0.566757 | 7_4:+56966130 | None:intergenic |
GATATATCTTGCAATGGCAA+AGG | 0.570631 | 7_4:+56966136 | None:intergenic |
CAGCAGTGACAGTATTCTGA+AGG | 0.571751 | 7_4:+56964113 | None:intergenic |
CAAGTTCTAATGTGAACAAG+TGG | 0.573289 | 7_4:-56961760 | Msa1165110:three_prime_UTR |
TAGGAACGTTCGTACGTGTG+CGG | 0.573882 | 7_4:-56966162 | Msa1165110:CDS |
AATATGGATGGAGAAATTGT+TGG | 0.576439 | 7_4:-56963702 | Msa1165110:CDS |
TCTGTTTGTAAATACTCTCT+GGG | 0.577942 | 7_4:+56963876 | None:intergenic |
AACGATACCCACAGCTCCAA+CGG | 0.578717 | 7_4:+56966490 | None:intergenic |
GCTGTGGGTATCGTTGCTGT+TGG | 0.578767 | 7_4:-56966482 | Msa1165110:CDS |
AAGCTGAGATTGGATTCCTC+CGG | 0.580230 | 7_4:+56961845 | None:intergenic |
CACCGAAAAGGTTGTGACAG+TGG | 0.581944 | 7_4:-56966698 | Msa1165110:five_prime_UTR |
AAGTCACTTTGCAAGATGGA+AGG | 0.582092 | 7_4:-56964288 | Msa1165110:CDS |
CTTGGCGTTGAAGGAGTGAA+CGG | 0.585542 | 7_4:+56961616 | None:intergenic |
AAACTAATGACTAAAGTGAA+CGG | 0.587325 | 7_4:+56961568 | None:intergenic |
GGGGATTGGGTAATAGCCAT+GGG | 0.587526 | 7_4:-56964148 | Msa1165110:CDS |
ATGAAAATCAACGACAACAT+GGG | 0.587711 | 7_4:+56965601 | None:intergenic |
AAAAGGTTCATCCAAAGGGA+AGG | 0.590674 | 7_4:-56965573 | Msa1165110:intron |
ATGGCTATTACCCAATCCCC+GGG | 0.595774 | 7_4:+56964151 | None:intergenic |
GGTCAAGTTGGTAGAGCCAG+AGG | 0.599131 | 7_4:+56961704 | None:intergenic |
TGAAAGTGTTGGCTGCTGAT+GGG | 0.600081 | 7_4:-56963668 | Msa1165110:CDS |
GAACCCAGCACGATCACCAG+GGG | 0.600193 | 7_4:+56962350 | None:intergenic |
GCACGATCACCAGGGGACCC+AGG | 0.601429 | 7_4:+56962357 | None:intergenic |
ATTGCTCACTGGAATTAGTG+TGG | 0.602326 | 7_4:+56966435 | None:intergenic |
TCTCCATCCATATTGACAAG+TGG | 0.603386 | 7_4:+56963711 | None:intergenic |
CAAAGTTGGGGTGCCCATGA+AGG | 0.604534 | 7_4:-56961915 | Msa1165110:CDS |
AACAGATTGTGCAATTAATG+TGG | 0.605597 | 7_4:-56963859 | Msa1165110:intron |
CATGTCTAAGGAAACTTCTG+GGG | 0.608468 | 7_4:-56965897 | Msa1165110:CDS |
TGAATTTGATGGAAAGCCCG+TGG | 0.609844 | 7_4:-56962307 | Msa1165110:CDS |
TGGTCGAAAGACGACAAATG+TGG | 0.613228 | 7_4:+56966076 | None:intergenic |
AAAGCCCGTGGAAAGCATGA+AGG | 0.616163 | 7_4:-56962295 | Msa1165110:CDS |
AAGCTTTGCTTCCGGAAGTG+GGG | 0.621714 | 7_4:+56964195 | None:intergenic |
TTGTCGTCTTTCGACCAACA+TGG | 0.625198 | 7_4:-56966070 | Msa1165110:intron |
AATTCAATGACAACATCACC+AGG | 0.627515 | 7_4:+56962324 | None:intergenic |
AGCATTCTTAGTCCAAGCCA+TGG | 0.630955 | 7_4:+56963281 | None:intergenic |
TTGATGGTGTACAACAAAGC+TGG | 0.638889 | 7_4:+56961664 | None:intergenic |
AGCAGTGACAGTATTCTGAA+GGG | 0.641778 | 7_4:+56964114 | None:intergenic |
GTTAATATTTCGATTCCACA+AGG | 0.645580 | 7_4:-56965788 | Msa1165110:intron |
GCCAAGGGCCCTAAATGGAG+AGG | 0.645596 | 7_4:-56961599 | Msa1165110:three_prime_UTR |
AGAAAGAGGACAAACCATGT+TGG | 0.646314 | 7_4:+56966056 | None:intergenic |
GGAACCCAGCACGATCACCA+GGG | 0.647337 | 7_4:+56962349 | None:intergenic |
GACTTTAAGTGTGATTCCGG+AGG | 0.648706 | 7_4:-56961861 | Msa1165110:CDS |
ACAGTATTCTGAAGGGAATG+CGG | 0.654266 | 7_4:+56964121 | None:intergenic |
ATGGCACAGGGAAATTCTGG+AGG | 0.659592 | 7_4:-56963735 | Msa1165110:intron |
CAATGACAACATCACCAGGA+CGG | 0.663393 | 7_4:+56962328 | None:intergenic |
GCCCGTGGAAAGCATGAAGG+AGG | 0.665398 | 7_4:-56962292 | Msa1165110:intron |
AACTTGTCATCAATGAAACA+AGG | 0.669183 | 7_4:+56961777 | None:intergenic |
GCAGGTTATTGAAATGATGG+TGG | 0.673889 | 7_4:-56961939 | Msa1165110:intron |
AGTGAACATCATGAAAGTGT+TGG | 0.676552 | 7_4:-56963679 | Msa1165110:CDS |
GCGTTGAAGGAGTGAACGGG+AGG | 0.677613 | 7_4:+56961620 | None:intergenic |
ACATGTCCGAAGAAGGAACA+GGG | 0.682454 | 7_4:+56965915 | None:intergenic |
TGGCACAGGGAAATTCTGGA+GGG | 0.686679 | 7_4:-56963734 | Msa1165110:intron |
AAGATGGAAGGACATTTGAG+GGG | 0.693003 | 7_4:-56964276 | Msa1165110:CDS |
AATGATGGTGGACAAAGTTG+GGG | 0.709009 | 7_4:-56961927 | Msa1165110:CDS |
ATGTCTAAGGAAACTTCTGG+GGG | 0.710738 | 7_4:-56965896 | Msa1165110:CDS |
TGGACGTAACAAATCAAACG+GGG | 0.745894 | 7_4:+56966096 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTAAAGTAAAAGAAAAT+AGG | + | chr7_4:56964207-56964226 | None:intergenic | 10.0% |
!!! | TTTTTTTATAACAATAACAA+CGG | - | chr7_4:56965607-56965626 | Msa1165110:CDS | 10.0% |
!! | TAATCTTGAAATAAAGTTAA+TGG | - | chr7_4:56961850-56961869 | Msa1165110:CDS | 15.0% |
!!! | TATTTTCAGAATAATTTTCT+AGG | + | chr7_4:56965376-56965395 | None:intergenic | 15.0% |
!! | TAAGATAAAATAAAATGATC+TGG | - | chr7_4:56966033-56966052 | Msa1165110:intron | 15.0% |
!! | AAGATAAAATAAAATGATCT+GGG | - | chr7_4:56966034-56966053 | Msa1165110:intron | 15.0% |
!! | AATAATCAATTCATCTAACA+TGG | - | chr7_4:56962042-56962061 | Msa1165110:intron | 20.0% |
!!! | ATTTAGAACTGAAAATTTGT+AGG | - | chr7_4:56962268-56962287 | Msa1165110:intron | 20.0% |
!!! | TTTAGAACTGAAAATTTGTA+GGG | - | chr7_4:56962269-56962288 | Msa1165110:intron | 20.0% |
!! | AAGAAATATATCTTGAATTG+TGG | + | chr7_4:56963221-56963240 | None:intergenic | 20.0% |
!! | TGTTAAATCTAACATTGAAA+TGG | + | chr7_4:56964233-56964252 | None:intergenic | 20.0% |
!!! | CTGATTTTTTAAATGTCTTT+TGG | - | chr7_4:56964257-56964276 | Msa1165110:CDS | 20.0% |
!!! | TTCATGTATTGTATGATTTT+TGG | - | chr7_4:56964289-56964308 | Msa1165110:CDS | 20.0% |
!! | GATCATAATATATCCATAAA+AGG | + | chr7_4:56964820-56964839 | None:intergenic | 20.0% |
!!! | AGTAAACTTTTTTTCTTTTC+AGG | - | chr7_4:56964920-56964939 | Msa1165110:intron | 20.0% |
!! | AAAATTACACAAAACATAAG+CGG | + | chr7_4:56965687-56965706 | None:intergenic | 20.0% |
!!! | AAATTTAAACGTTTTTGACT+AGG | - | chr7_4:56965851-56965870 | Msa1165110:CDS | 20.0% |
!! | AGATAAAATAAAATGATCTG+GGG | - | chr7_4:56966035-56966054 | Msa1165110:intron | 20.0% |
!! | CAAACTTATACTAATCTTTA+GGG | - | chr7_4:56966104-56966123 | Msa1165110:CDS | 20.0% |
! | AGAAAGAATTAACAAATACC+AGG | + | chr7_4:56961627-56961646 | None:intergenic | 25.0% |
! | GATGTATTTGTGAAAAACTA+AGG | + | chr7_4:56963106-56963125 | None:intergenic | 25.0% |
! | TGGTATATACTAACTAGTTA+TGG | + | chr7_4:56963201-56963220 | None:intergenic | 25.0% |
! | AATTCAATTGTTAGAGTGAT+AGG | + | chr7_4:56963339-56963358 | None:intergenic | 25.0% |
! | TATTAAAAGTGAATGTGGAA+AGG | + | chr7_4:56963371-56963390 | None:intergenic | 25.0% |
!!! | TCCACATTCACTTTTAATAA+TGG | - | chr7_4:56963372-56963391 | Msa1165110:intron | 25.0% |
!!! | CCACATTCACTTTTAATAAT+GGG | - | chr7_4:56963373-56963392 | Msa1165110:intron | 25.0% |
! | AGGATGTTAAGAAAGATAAA+GGG | + | chr7_4:56963437-56963456 | None:intergenic | 25.0% |
! | TCTTGATATTCTTATGTTGT+AGG | - | chr7_4:56963602-56963621 | Msa1165110:intron | 25.0% |
!! | TTGAGTCTTAAATGATTTTC+AGG | + | chr7_4:56963711-56963730 | None:intergenic | 25.0% |
! | AAAGAAAATAGGTTAAAACC+AGG | + | chr7_4:56964196-56964215 | None:intergenic | 25.0% |
! | TTCAGATTGTCACATATAAA+CGG | + | chr7_4:56964741-56964760 | None:intergenic | 25.0% |
!! | CTTACAATTTTCACCTTTTA+TGG | - | chr7_4:56964804-56964823 | Msa1165110:intron | 25.0% |
! | GTCAATCAAAATTGTTTATG+CGG | + | chr7_4:56964842-56964861 | None:intergenic | 25.0% |
!! | TTGATTGACATACTTTTATG+TGG | - | chr7_4:56964853-56964872 | Msa1165110:intron | 25.0% |
! | CATCTAAAGATCGATTAATT+GGG | + | chr7_4:56965073-56965092 | None:intergenic | 25.0% |
!! | ATACTTGTTACTATCATACT+TGG | - | chr7_4:56965318-56965337 | Msa1165110:intron | 25.0% |
! | TTTGATCTATCAATAAGATG+AGG | + | chr7_4:56965401-56965420 | None:intergenic | 25.0% |
! | ATTACAAATCAAAGAGAAGA+TGG | - | chr7_4:56965495-56965514 | Msa1165110:intron | 25.0% |
! | GATAAAATAAAATGATCTGG+GGG | - | chr7_4:56966036-56966055 | Msa1165110:intron | 25.0% |
! | CCTAAAGATTAGTATAAGTT+TGG | + | chr7_4:56966106-56966125 | None:intergenic | 25.0% |
! | CCAAACTTATACTAATCTTT+AGG | - | chr7_4:56966103-56966122 | Msa1165110:CDS | 25.0% |
! | CATAATGAAGAATAATCTCA+CGG | + | chr7_4:56966228-56966247 | None:intergenic | 25.0% |
! | AAACTAATGACTAAAGTGAA+CGG | + | chr7_4:56966671-56966690 | None:intergenic | 25.0% |
! | ATCTATCATGAGTTATTTCC+TGG | - | chr7_4:56961606-56961625 | Msa1165110:three_prime_UTR | 30.0% |
! | TTGAAGAATCTCTCTGATTT+TGG | - | chr7_4:56961673-56961692 | Msa1165110:three_prime_UTR | 30.0% |
! | TGAAGAATCTCTCTGATTTT+GGG | - | chr7_4:56961674-56961693 | Msa1165110:three_prime_UTR | 30.0% |
AGATTTAGTTAATTGCTCAC+TGG | + | chr7_4:56961815-56961834 | None:intergenic | 30.0% | |
! | TTAATGGCATGCTTTTCAAT+TGG | - | chr7_4:56961866-56961885 | Msa1165110:CDS | 30.0% |
AATATTGACGATGCATACAA+AGG | - | chr7_4:56962006-56962025 | Msa1165110:intron | 30.0% | |
TCTAACATGGCTTCAAATTT+AGG | - | chr7_4:56962055-56962074 | Msa1165110:intron | 30.0% | |
AACCATGATATATCTTGCAA+TGG | + | chr7_4:56962109-56962128 | None:intergenic | 30.0% | |
AGATATATCATGGTTGACAT+TGG | - | chr7_4:56962114-56962133 | Msa1165110:intron | 30.0% | |
TAAAAGTTCAAACCAGAAAG+AGG | + | chr7_4:56962197-56962216 | None:intergenic | 30.0% | |
ATCGAAATATTAACAACAGC+AGG | + | chr7_4:56962442-56962461 | None:intergenic | 30.0% | |
GTTAATATTTCGATTCCACA+AGG | - | chr7_4:56962448-56962467 | Msa1165110:intron | 30.0% | |
AACGATTCATTCAGATGAAA+AGG | + | chr7_4:56962482-56962501 | None:intergenic | 30.0% | |
!! | ATTGGCTTTGTAGATTTCTA+TGG | - | chr7_4:56962544-56962563 | Msa1165110:intron | 30.0% |
!! | ATTTCTATGGTTTTGCTACA+GGG | - | chr7_4:56962557-56962576 | Msa1165110:intron | 30.0% |
GGAACAATCATTAACAAAGA+TGG | - | chr7_4:56962595-56962614 | Msa1165110:intron | 30.0% | |
ATGAAAATCAACGACAACAT+GGG | + | chr7_4:56962638-56962657 | None:intergenic | 30.0% | |
TTCAAGACAGTGTACATATT+TGG | + | chr7_4:56962716-56962735 | None:intergenic | 30.0% | |
ATATAACTGTAGCTTGATAC+TGG | + | chr7_4:56962850-56962869 | None:intergenic | 30.0% | |
CTACATGAGTTAGAATAAGA+CGG | - | chr7_4:56963173-56963192 | Msa1165110:intron | 30.0% | |
GAAAGAAAGTTCAACTGTTA+GGG | + | chr7_4:56963298-56963317 | None:intergenic | 30.0% | |
TGAAAGAAAGTTCAACTGTT+AGG | + | chr7_4:56963299-56963318 | None:intergenic | 30.0% | |
CCCATTATTAAAAGTGAATG+TGG | + | chr7_4:56963376-56963395 | None:intergenic | 30.0% | |
CAAGATTAGAGAGAAAATTG+TGG | + | chr7_4:56963404-56963423 | None:intergenic | 30.0% | |
GAGGATGTTAAGAAAGATAA+AGG | + | chr7_4:56963438-56963457 | None:intergenic | 30.0% | |
CTTGTAATGAGCTTATGTAT+GGG | + | chr7_4:56963491-56963510 | None:intergenic | 30.0% | |
ACTTGTAATGAGCTTATGTA+TGG | + | chr7_4:56963492-56963511 | None:intergenic | 30.0% | |
ATGATAGTTTATCATGCTGT+AGG | - | chr7_4:56963516-56963535 | Msa1165110:intron | 30.0% | |
ATATCAAGAACCAATTGTTC+TGG | + | chr7_4:56963591-56963610 | None:intergenic | 30.0% | |
ATATTGAGAACCAATTGATC+CGG | + | chr7_4:56963649-56963668 | None:intergenic | 30.0% | |
TCTGTTTGTAAATACTCTCT+GGG | + | chr7_4:56964363-56964382 | None:intergenic | 30.0% | |
ATCTGTTTGTAAATACTCTC+TGG | + | chr7_4:56964364-56964383 | None:intergenic | 30.0% | |
AACAGATTGTGCAATTAATG+TGG | - | chr7_4:56964377-56964396 | Msa1165110:intron | 30.0% | |
ATAAACTACCCAAGTAGATA+TGG | - | chr7_4:56964426-56964445 | Msa1165110:intron | 30.0% | |
TCCATATTCCATATCTACTT+GGG | + | chr7_4:56964437-56964456 | None:intergenic | 30.0% | |
ATCCATATTCCATATCTACT+TGG | + | chr7_4:56964438-56964457 | None:intergenic | 30.0% | |
GTAGATATGGAATATGGATT+TGG | - | chr7_4:56964439-56964458 | Msa1165110:intron | 30.0% | |
AATATGGATGGAGAAATTGT+TGG | - | chr7_4:56964534-56964553 | Msa1165110:intron | 30.0% | |
! | ATAGAGCATTTCAAGAAAAG+TGG | - | chr7_4:56964630-56964649 | Msa1165110:intron | 30.0% |
! | TAGAGCATTTCAAGAAAAGT+GGG | - | chr7_4:56964631-56964650 | Msa1165110:intron | 30.0% |
TCCAAGCAGAAAGTTTAATT+AGG | - | chr7_4:56964775-56964794 | Msa1165110:intron | 30.0% | |
TGGTTAATACTTGAGTAGTT+AGG | - | chr7_4:56964873-56964892 | Msa1165110:intron | 30.0% | |
TTCATTCCCTAATGTCAATA+AGG | - | chr7_4:56965023-56965042 | Msa1165110:intron | 30.0% | |
TCATTCCCTAATGTCAATAA+GGG | - | chr7_4:56965024-56965043 | Msa1165110:intron | 30.0% | |
ATTAATTGGGAACATACCAT+TGG | + | chr7_4:56965060-56965079 | None:intergenic | 30.0% | |
GCATCTAAAGATCGATTAAT+TGG | + | chr7_4:56965074-56965093 | None:intergenic | 30.0% | |
! | TTTTCAGAATCTAGATTCAC+AGG | - | chr7_4:56965106-56965125 | Msa1165110:intron | 30.0% |
TTCAAAGTTGTTTGCAAAGT+TGG | - | chr7_4:56965176-56965195 | Msa1165110:intron | 30.0% | |
TTATTATGTTAGTGAAGCCA+TGG | - | chr7_4:56965278-56965297 | Msa1165110:intron | 30.0% | |
TATTATGTTAGTGAAGCCAT+GGG | - | chr7_4:56965279-56965298 | Msa1165110:intron | 30.0% | |
TGTTACTATCATACTTGGAT+AGG | - | chr7_4:56965323-56965342 | Msa1165110:intron | 30.0% | |
GTTACTATCATACTTGGATA+GGG | - | chr7_4:56965324-56965343 | Msa1165110:intron | 30.0% | |
CTAGGATTCTCACTTTAATA+GGG | + | chr7_4:56965358-56965377 | None:intergenic | 30.0% | |
! | TCTAGGATTCTCACTTTAAT+AGG | + | chr7_4:56965359-56965378 | None:intergenic | 30.0% |
AAGTGAACACAAAAACAAAG+AGG | - | chr7_4:56965419-56965438 | Msa1165110:intron | 30.0% | |
CGTAACTATCACAATTAGAT+AGG | + | chr7_4:56965573-56965592 | None:intergenic | 30.0% | |
AATGTTGTCTAATCAGAAAG+AGG | + | chr7_4:56965643-56965662 | None:intergenic | 30.0% | |
GAAATAATGTGTTTGTCACA+AGG | - | chr7_4:56965828-56965847 | Msa1165110:CDS | 30.0% | |
GATGTTGTCATTGAATTTGA+TGG | - | chr7_4:56965918-56965937 | Msa1165110:CDS | 30.0% | |
!!! | TCGATTTTTTTTACTGTCTG+TGG | + | chr7_4:56966205-56966224 | None:intergenic | 30.0% |
CATAGATGTAAAATTGTTGC+AGG | - | chr7_4:56966279-56966298 | Msa1165110:intron | 30.0% | |
!! | CTTTTAACTACAACCTTCAT+GGG | + | chr7_4:56966337-56966356 | None:intergenic | 30.0% |
!! | TCTTTTAACTACAACCTTCA+TGG | + | chr7_4:56966338-56966357 | None:intergenic | 30.0% |
AACTTGTCATCAATGAAACA+AGG | + | chr7_4:56966462-56966481 | None:intergenic | 30.0% | |
ATGTGAACAAGTGGTATATT+TGG | - | chr7_4:56966485-56966504 | Msa1165110:CDS | 30.0% | |
!!! | CCTTTATTTTTTGGTCAAGT+TGG | + | chr7_4:56966547-56966566 | None:intergenic | 30.0% |
CCAACTTGACCAAAAAATAA+AGG | - | chr7_4:56966544-56966563 | Msa1165110:intron | 30.0% | |
!!! | CTGGTAGAACCTTTATTTTT+TGG | + | chr7_4:56966556-56966575 | None:intergenic | 30.0% |
! | GGAGAAAAATTTAGTGTTGA+TGG | + | chr7_4:56966591-56966610 | None:intergenic | 30.0% |
AACTAATGACTAAAGTGAAC+GGG | + | chr7_4:56966670-56966689 | None:intergenic | 30.0% | |
!! | CGTTGAAGAGTGTAGAATTT+TGG | - | chr7_4:56961576-56961595 | Msa1165110:three_prime_UTR | 35.0% |
! | GAAGAATCTCTCTGATTTTG+GGG | - | chr7_4:56961675-56961694 | Msa1165110:three_prime_UTR | 35.0% |
! | AAGAATCTCTCTGATTTTGG+GGG | - | chr7_4:56961676-56961695 | Msa1165110:three_prime_UTR | 35.0% |
ACTGGAATTAGTGTGGTTAT+CGG | + | chr7_4:56961797-56961816 | None:intergenic | 35.0% | |
GATATATCTTGCAATGGCAA+AGG | + | chr7_4:56962103-56962122 | None:intergenic | 35.0% | |
TGCCATTGCAAGATATATCA+TGG | - | chr7_4:56962104-56962123 | Msa1165110:intron | 35.0% | |
TGTGGACGTAACAAATCAAA+CGG | + | chr7_4:56962145-56962164 | None:intergenic | 35.0% | |
CACATACATCTAAACATGCA+TGG | + | chr7_4:56962244-56962263 | None:intergenic | 35.0% | |
ACATGTCTAAGGAAACTTCT+GGG | - | chr7_4:56962338-56962357 | Msa1165110:CDS | 35.0% | |
TGATGAATCAAAGCCATCTA+AGG | - | chr7_4:56962369-56962388 | Msa1165110:intron | 35.0% | |
! | AAGCCATCTAAGGATACTTT+TGG | - | chr7_4:56962379-56962398 | Msa1165110:intron | 35.0% |
!! | CTACCAAAAGTATCCTTAGA+TGG | + | chr7_4:56962385-56962404 | None:intergenic | 35.0% |
GAAAAGGTAGAAAAACCTTG+TGG | + | chr7_4:56962466-56962485 | None:intergenic | 35.0% | |
!!! | CTCTTTTGAGATTATGCTGA+TGG | - | chr7_4:56962513-56962532 | Msa1165110:intron | 35.0% |
TTGAGATTATGCTGATGGTT+TGG | - | chr7_4:56962518-56962537 | Msa1165110:intron | 35.0% | |
!! | GATTTCTATGGTTTTGCTAC+AGG | - | chr7_4:56962556-56962575 | Msa1165110:intron | 35.0% |
CATGAAAATCAACGACAACA+TGG | + | chr7_4:56962639-56962658 | None:intergenic | 35.0% | |
!!! | CATGTTGTCGTTGATTTTCA+TGG | - | chr7_4:56962637-56962656 | Msa1165110:intron | 35.0% |
!! | GTTGATTTTCATGGCACAAA+AGG | - | chr7_4:56962646-56962665 | Msa1165110:intron | 35.0% |
GAAGGTTTGTGTTCAAGAAA+GGG | - | chr7_4:56962681-56962700 | Msa1165110:intron | 35.0% | |
AGTTCTCTGTGATGTAAATG+TGG | - | chr7_4:56962767-56962786 | Msa1165110:intron | 35.0% | |
! | TGCAAACGAAACATGCTTTT+GGG | + | chr7_4:56962816-56962835 | None:intergenic | 35.0% |
! | ATGCAAACGAAACATGCTTT+TGG | + | chr7_4:56962817-56962836 | None:intergenic | 35.0% |
CTTTGTATGACTCAAAGCTA+GGG | - | chr7_4:56962926-56962945 | Msa1165110:intron | 35.0% | |
GTACTTTCTGAGTCATGATT+TGG | - | chr7_4:56962975-56962994 | Msa1165110:intron | 35.0% | |
TGATCCATTCCCAACAAAAT+AGG | - | chr7_4:56963006-56963025 | Msa1165110:intron | 35.0% | |
GATCCATTCCCAACAAAATA+GGG | - | chr7_4:56963007-56963026 | Msa1165110:intron | 35.0% | |
! | AAGCAATGCCCTATTTTGTT+GGG | + | chr7_4:56963018-56963037 | None:intergenic | 35.0% |
! | TAAGCAATGCCCTATTTTGT+TGG | + | chr7_4:56963019-56963038 | None:intergenic | 35.0% |
! | TCGTTTTCATTCAGTTCTGT+AGG | + | chr7_4:56963061-56963080 | None:intergenic | 35.0% |
ACTGTAACAACCAAACCTTT+AGG | - | chr7_4:56963141-56963160 | Msa1165110:intron | 35.0% | |
AGTTCAACTGTTAGGGTAAA+AGG | + | chr7_4:56963291-56963310 | None:intergenic | 35.0% | |
AAAAGTGAATGTGGAAAGGA+AGG | + | chr7_4:56963367-56963386 | None:intergenic | 35.0% | |
GCTAAATGAGCTACTATACA+AGG | + | chr7_4:56963542-56963561 | None:intergenic | 35.0% | |
ATAGTAGCTCATTTAGCTGT+AGG | - | chr7_4:56963545-56963564 | Msa1165110:intron | 35.0% | |
! | ATTGAAGTCACTTTGCAAGA+TGG | - | chr7_4:56963944-56963963 | Msa1165110:intron | 35.0% |
!! | ATCCCAAATCACTGCTTTTA+CGG | + | chr7_4:56964329-56964348 | None:intergenic | 35.0% |
ATCTACTTGGGTAGTTTATG+CGG | + | chr7_4:56964425-56964444 | None:intergenic | 35.0% | |
ACCCAAGTAGATATGGAATA+TGG | - | chr7_4:56964433-56964452 | Msa1165110:intron | 35.0% | |
TTGCATGTTATCTGCTTGTA+TGG | - | chr7_4:56964482-56964501 | Msa1165110:intron | 35.0% | |
! | AGTGAACATCATGAAAGTGT+TGG | - | chr7_4:56964557-56964576 | Msa1165110:intron | 35.0% |
! | ATTTTACACACAGAGTCGAT+TGG | + | chr7_4:56964609-56964628 | None:intergenic | 35.0% |
AAGAAAAGTGGGTATGTTTC+TGG | - | chr7_4:56964642-56964661 | Msa1165110:intron | 35.0% | |
GCCTAATTAAACTTTCTGCT+TGG | + | chr7_4:56964779-56964798 | None:intergenic | 35.0% | |
!! | TTCTTTTCAGGAGAGTGATA+CGG | - | chr7_4:56964932-56964951 | Msa1165110:intron | 35.0% |
GAATGCCCTTATTGACATTA+GGG | + | chr7_4:56965032-56965051 | None:intergenic | 35.0% | |
AGAATGCCCTTATTGACATT+AGG | + | chr7_4:56965033-56965052 | None:intergenic | 35.0% | |
!! | TGCTTTCTTTTGCTATGCTT+TGG | - | chr7_4:56965238-56965257 | Msa1165110:intron | 35.0% |
TAATCAGAAAGAGGAGTAAG+GGG | + | chr7_4:56965634-56965653 | None:intergenic | 35.0% | |
CTAATCAGAAAGAGGAGTAA+GGG | + | chr7_4:56965635-56965654 | None:intergenic | 35.0% | |
TCTAATCAGAAAGAGGAGTA+AGG | + | chr7_4:56965636-56965655 | None:intergenic | 35.0% | |
TACACAAAACATAAGCGGAA+TGG | + | chr7_4:56965682-56965701 | None:intergenic | 35.0% | |
GAGCAACACAATGCATATTA+TGG | + | chr7_4:56965781-56965800 | None:intergenic | 35.0% | |
!! | TTTTTGACTAGGTAACTCCT+GGG | - | chr7_4:56965862-56965881 | Msa1165110:CDS | 35.0% |
AATTCAATGACAACATCACC+AGG | + | chr7_4:56965915-56965934 | None:intergenic | 35.0% | |
GTTGCAGGTTATTGAAATGA+TGG | - | chr7_4:56966294-56966313 | Msa1165110:intron | 35.0% | |
!! | AAATGATGGTGGACAAAGTT+GGG | - | chr7_4:56966308-56966327 | Msa1165110:intron | 35.0% |
! | CAAGTTCTAATGTGAACAAG+TGG | - | chr7_4:56966476-56966495 | Msa1165110:CDS | 35.0% |
!!! | GCACAAGTTTTTTTAACCTC+TGG | - | chr7_4:56966516-56966535 | Msa1165110:CDS | 35.0% |
ATTGCTCACTGGAATTAGTG+TGG | + | chr7_4:56961804-56961823 | None:intergenic | 40.0% | |
TGGACGTAACAAATCAAACG+GGG | + | chr7_4:56962143-56962162 | None:intergenic | 40.0% | |
GTGGACGTAACAAATCAAAC+GGG | + | chr7_4:56962144-56962163 | None:intergenic | 40.0% | |
AGAAAGAGGACAAACCATGT+TGG | + | chr7_4:56962183-56962202 | None:intergenic | 40.0% | |
! | AACATGGTTTGTCCTCTTTC+TGG | - | chr7_4:56962182-56962201 | Msa1165110:intron | 40.0% |
GACATGTCTAAGGAAACTTC+TGG | - | chr7_4:56962337-56962356 | Msa1165110:CDS | 40.0% | |
CATGTCTAAGGAAACTTCTG+GGG | - | chr7_4:56962339-56962358 | Msa1165110:CDS | 40.0% | |
ATGTCTAAGGAAACTTCTGG+GGG | - | chr7_4:56962340-56962359 | Msa1165110:CDS | 40.0% | |
! | ATGCTGATGGTTTGGAGTAT+TGG | - | chr7_4:56962526-56962545 | Msa1165110:intron | 40.0% |
! | TTTGCTACAGGGAAGAGTAT+TGG | - | chr7_4:56962568-56962587 | Msa1165110:intron | 40.0% |
GCACAAAAGGTTCATCCAAA+GGG | - | chr7_4:56962659-56962678 | Msa1165110:intron | 40.0% | |
AAAAGGTTCATCCAAAGGGA+AGG | - | chr7_4:56962663-56962682 | Msa1165110:intron | 40.0% | |
TTGAACACAAACCTTCCCTT+TGG | + | chr7_4:56962677-56962696 | None:intergenic | 40.0% | |
GGAAGGTTTGTGTTCAAGAA+AGG | - | chr7_4:56962680-56962699 | Msa1165110:intron | 40.0% | |
! | ATGTGGTAGAAGAGTACAGT+TGG | - | chr7_4:56962784-56962803 | Msa1165110:intron | 40.0% |
GCTTTGTATGACTCAAAGCT+AGG | - | chr7_4:56962925-56962944 | Msa1165110:intron | 40.0% | |
! | ATGCCCTATTTTGTTGGGAA+TGG | + | chr7_4:56963013-56963032 | None:intergenic | 40.0% |
AACGACGATTCTGTGAATTC+TGG | - | chr7_4:56963076-56963095 | Msa1165110:intron | 40.0% | |
AACAACCAAACCTTTAGGTG+AGG | - | chr7_4:56963146-56963165 | Msa1165110:intron | 40.0% | |
ATGTAGTTGACCTCACCTAA+AGG | + | chr7_4:56963159-56963178 | None:intergenic | 40.0% | |
ATCTAAATCCCTGCTAACGT+TGG | - | chr7_4:56963243-56963262 | Msa1165110:CDS | 40.0% | |
GACAGCAAAAAGGCAAAATG+AGG | + | chr7_4:56963457-56963476 | None:intergenic | 40.0% | |
CTGAAAACTCGACAGCAAAA+AGG | + | chr7_4:56963467-56963486 | None:intergenic | 40.0% | |
!! | TTGTATAGTAGCTTGCTTGC+CGG | - | chr7_4:56963627-56963646 | Msa1165110:CDS | 40.0% |
TCTGATGTCTTCATTTCACG+AGG | + | chr7_4:56963796-56963815 | None:intergenic | 40.0% | |
TCTGATGTCTTCATTTCACG+AGG | + | chr7_4:56963796-56963815 | None:intergenic | 40.0% | |
! | AAGTCACTTTGCAAGATGGA+AGG | - | chr7_4:56963948-56963967 | Msa1165110:intron | 40.0% |
CAAGATGGAAGGACATTTGA+GGG | - | chr7_4:56963959-56963978 | Msa1165110:intron | 40.0% | |
AAGATGGAAGGACATTTGAG+GGG | - | chr7_4:56963960-56963979 | Msa1165110:intron | 40.0% | |
!! | AAATTCTGAAACCCCACTTC+CGG | - | chr7_4:56964030-56964049 | Msa1165110:intron | 40.0% |
! | CAAAGCTTGGTTCTTCAACT+AGG | - | chr7_4:56964056-56964075 | Msa1165110:intron | 40.0% |
! | ACAGTATTCTGAAGGGAATG+CGG | + | chr7_4:56964118-56964137 | None:intergenic | 40.0% |
AGCAGTGACAGTATTCTGAA+GGG | + | chr7_4:56964125-56964144 | None:intergenic | 40.0% | |
GGTGCGAAGATAAAACTTTC+TGG | - | chr7_4:56964155-56964174 | Msa1165110:CDS | 40.0% | |
TGACCGTAAAAGCAGTGATT+TGG | - | chr7_4:56964323-56964342 | Msa1165110:intron | 40.0% | |
GACCGTAAAAGCAGTGATTT+GGG | - | chr7_4:56964324-56964343 | Msa1165110:intron | 40.0% | |
! | AGCAGTGATTTGGGATTTAG+TGG | - | chr7_4:56964333-56964352 | Msa1165110:intron | 40.0% |
TCTACTTGGGTAGTTTATGC+GGG | + | chr7_4:56964424-56964443 | None:intergenic | 40.0% | |
TTATCTGCTTGTATGGCACA+GGG | - | chr7_4:56964489-56964508 | Msa1165110:intron | 40.0% | |
TCTCCATCCATATTGACAAG+TGG | + | chr7_4:56964528-56964547 | None:intergenic | 40.0% | |
!! | TAAGGGCATTCTTGTACCAA+TGG | - | chr7_4:56965041-56965060 | Msa1165110:intron | 40.0% |
TTCACAGGACAGTATCTTCA+TGG | - | chr7_4:56965121-56965140 | Msa1165110:intron | 40.0% | |
TTGTGATAGTTACGTGTAGC+AGG | - | chr7_4:56965579-56965598 | Msa1165110:CDS | 40.0% | |
CACAATGCATATTATGGCAG+AGG | + | chr7_4:56965775-56965794 | None:intergenic | 40.0% | |
!! | GTTTTTGACTAGGTAACTCC+TGG | - | chr7_4:56965861-56965880 | Msa1165110:CDS | 40.0% |
GCAGGTTATTGAAATGATGG+TGG | - | chr7_4:56966297-56966316 | Msa1165110:intron | 40.0% | |
!! | GAAATGATGGTGGACAAAGT+TGG | - | chr7_4:56966307-56966326 | Msa1165110:intron | 40.0% |
!! | AATGATGGTGGACAAAGTTG+GGG | - | chr7_4:56966309-56966328 | Msa1165110:intron | 40.0% |
TGCGACTTTAAGTGTGATTC+CGG | - | chr7_4:56966372-56966391 | Msa1165110:intron | 40.0% | |
!! | TTGATGGTGTACAACAAAGC+TGG | + | chr7_4:56966575-56966594 | None:intergenic | 40.0% |
GTTGAGATCCTCTCCATTTA+GGG | + | chr7_4:56966648-56966667 | None:intergenic | 40.0% | |
TGGTCGAAAGACGACAAATG+TGG | + | chr7_4:56962163-56962182 | None:intergenic | 45.0% | |
TTGTCGTCTTTCGACCAACA+TGG | - | chr7_4:56962166-56962185 | Msa1165110:intron | 45.0% | |
AGTTAGCCCTGTTCCTTCTT+CGG | - | chr7_4:56962315-56962334 | Msa1165110:CDS | 45.0% | |
ACATGTCCGAAGAAGGAACA+GGG | + | chr7_4:56962324-56962343 | None:intergenic | 45.0% | |
TCCTTCTTCGGACATGTCTA+AGG | - | chr7_4:56962327-56962346 | Msa1165110:CDS | 45.0% | |
TCCTTAGACATGTCCGAAGA+AGG | + | chr7_4:56962331-56962350 | None:intergenic | 45.0% | |
GCAAATGCTGCTGCTAAAGT+TGG | - | chr7_4:56962415-56962434 | Msa1165110:intron | 45.0% | |
GGCACAAAAGGTTCATCCAA+AGG | - | chr7_4:56962658-56962677 | Msa1165110:intron | 45.0% | |
TGTATGACTCAAAGCTAGGG+TGG | - | chr7_4:56962929-56962948 | Msa1165110:intron | 45.0% | |
TAGGGTGGCTTAAGATCTGA+TGG | - | chr7_4:56962944-56962963 | Msa1165110:intron | 45.0% | |
AGGGTGGCTTAAGATCTGAT+GGG | - | chr7_4:56962945-56962964 | Msa1165110:intron | 45.0% | |
GTTGACCTCACCTAAAGGTT+TGG | + | chr7_4:56963154-56963173 | None:intergenic | 45.0% | |
CTCAAAGTCCAACGTTAGCA+GGG | + | chr7_4:56963254-56963273 | None:intergenic | 45.0% | |
ACTCAAAGTCCAACGTTAGC+AGG | + | chr7_4:56963255-56963274 | None:intergenic | 45.0% | |
AGTGAATGTGGAAAGGAAGG+AGG | + | chr7_4:56963364-56963383 | None:intergenic | 45.0% | |
! | AGCTTGCTTGCCAGAACAAT+TGG | - | chr7_4:56963578-56963597 | Msa1165110:intron | 45.0% |
GGCAAGCAAGCTACTATACA+AGG | + | chr7_4:56963628-56963647 | None:intergenic | 45.0% | |
GCAAGATGGAAGGACATTTG+AGG | - | chr7_4:56963958-56963977 | Msa1165110:intron | 45.0% | |
AAGGACATTTGAGGGGAAAG+TGG | - | chr7_4:56963967-56963986 | Msa1165110:intron | 45.0% | |
GAAGAACCAAGCTTTGCTTC+CGG | + | chr7_4:56964052-56964071 | None:intergenic | 45.0% | |
CAGCAGTGACAGTATTCTGA+AGG | + | chr7_4:56964126-56964145 | None:intergenic | 45.0% | |
CTTCAGAATACTGTCACTGC+TGG | - | chr7_4:56964124-56964143 | Msa1165110:CDS | 45.0% | |
CTGTCACTGCTGGTATTGTA+AGG | - | chr7_4:56964134-56964153 | Msa1165110:CDS | 45.0% | |
TGGCTGTAAAAGATGTCTCC+TGG | - | chr7_4:56964175-56964194 | Msa1165110:CDS | 45.0% | |
TGGGTAGTTTATGCGGGAAA+AGG | + | chr7_4:56964418-56964437 | None:intergenic | 45.0% | |
GTTATCTGCTTGTATGGCAC+AGG | - | chr7_4:56964488-56964507 | Msa1165110:intron | 45.0% | |
TGTATGGCACAGGGAAATTC+TGG | - | chr7_4:56964498-56964517 | Msa1165110:intron | 45.0% | |
!! | ATGAAAGTGTTGGCTGCTGA+TGG | - | chr7_4:56964567-56964586 | Msa1165110:intron | 45.0% |
!! | TGAAAGTGTTGGCTGCTGAT+GGG | - | chr7_4:56964568-56964587 | Msa1165110:intron | 45.0% |
ACACACAGAGTCGATTGGTA+CGG | + | chr7_4:56964604-56964623 | None:intergenic | 45.0% | |
AGCATTCTTAGTCCAAGCCA+TGG | + | chr7_4:56964958-56964977 | None:intergenic | 45.0% | |
TATGTTAGTGAAGCCATGGG+CGG | - | chr7_4:56965282-56965301 | Msa1165110:intron | 45.0% | |
! | CATTGTGTTGCTCAAATGCG+AGG | - | chr7_4:56965788-56965807 | Msa1165110:intron | 45.0% |
CAATGACAACATCACCAGGA+CGG | + | chr7_4:56965911-56965930 | None:intergenic | 45.0% | |
TGAATTTGATGGAAAGCCCG+TGG | - | chr7_4:56965929-56965948 | Msa1165110:CDS | 45.0% | |
TACCTCCTTCATGCTTTCCA+CGG | + | chr7_4:56965949-56965968 | None:intergenic | 45.0% | |
ATCTGGGGGAGCAAAACAAT+TGG | - | chr7_4:56966050-56966069 | Msa1165110:intron | 45.0% | |
GACTTTAAGTGTGATTCCGG+AGG | - | chr7_4:56966375-56966394 | Msa1165110:intron | 45.0% | |
AAGCTGAGATTGGATTCCTC+CGG | + | chr7_4:56966394-56966413 | None:intergenic | 45.0% | |
GGAATCCAATCTCAGCTTGT+AGG | - | chr7_4:56966396-56966415 | Msa1165110:intron | 45.0% | |
AGTCTCCTACAAGCTGAGAT+TGG | + | chr7_4:56966404-56966423 | None:intergenic | 45.0% | |
GGTTGAGATCCTCTCCATTT+AGG | + | chr7_4:56966649-56966668 | None:intergenic | 45.0% | |
TTGAACAGAAGCTCTGCCGT+TGG | - | chr7_4:56961730-56961749 | Msa1165110:three_prime_UTR | 50.0% | |
AACGATACCCACAGCTCCAA+CGG | + | chr7_4:56961749-56961768 | None:intergenic | 50.0% | |
TAGGAACGTTCGTACGTGTG+CGG | - | chr7_4:56962074-56962093 | Msa1165110:intron | 50.0% | |
GACATGTCCGAAGAAGGAAC+AGG | + | chr7_4:56962325-56962344 | None:intergenic | 50.0% | |
!! | ACAGGGAAGAGTATTGGCTC+TGG | - | chr7_4:56962574-56962593 | Msa1165110:intron | 50.0% |
! | GAAGTGCTACTGTTCCTGCT+TGG | - | chr7_4:56962896-56962915 | Msa1165110:intron | 50.0% |
TACTGTTCCTGCTTGGTCTG+TGG | - | chr7_4:56962903-56962922 | Msa1165110:intron | 50.0% | |
TACAAAGCCACAGACCAAGC+AGG | + | chr7_4:56962913-56962932 | None:intergenic | 50.0% | |
! | AGCTTGCTTGCCGGATCAAT+TGG | - | chr7_4:56963636-56963655 | Msa1165110:CDS | 50.0% |
AAGCTTTGCTTCCGGAAGTG+GGG | + | chr7_4:56964044-56964063 | None:intergenic | 50.0% | |
CAAGCTTTGCTTCCGGAAGT+GGG | + | chr7_4:56964045-56964064 | None:intergenic | 50.0% | |
TCTTCAACTAGGCTTCGTCC+CGG | - | chr7_4:56964067-56964086 | Msa1165110:intron | 50.0% | |
ATGGCTATTACCCAATCCCC+GGG | + | chr7_4:56964088-56964107 | None:intergenic | 50.0% | |
CATGGCTATTACCCAATCCC+CGG | + | chr7_4:56964089-56964108 | None:intergenic | 50.0% | |
GGGGATTGGGTAATAGCCAT+GGG | - | chr7_4:56964088-56964107 | Msa1165110:intron | 50.0% | |
ATGGCACAGGGAAATTCTGG+AGG | - | chr7_4:56964501-56964520 | Msa1165110:intron | 50.0% | |
TGGCACAGGGAAATTCTGGA+GGG | - | chr7_4:56964502-56964521 | Msa1165110:intron | 50.0% | |
TGGAGGGCCACTTGTCAATA+TGG | - | chr7_4:56964518-56964537 | Msa1165110:intron | 50.0% | |
GGGCCACTTGTCAATATGGA+TGG | - | chr7_4:56964522-56964541 | Msa1165110:intron | 50.0% | |
GTAGAAGTTTGAACCGCCCA+TGG | + | chr7_4:56965298-56965317 | None:intergenic | 50.0% | |
! | AAAGCCCGTGGAAAGCATGA+AGG | - | chr7_4:56965941-56965960 | Msa1165110:CDS | 50.0% |
ACCTCCTTCATGCTTTCCAC+GGG | + | chr7_4:56965948-56965967 | None:intergenic | 50.0% | |
! | TTGGCGTTGAAGGAGTGAAC+GGG | + | chr7_4:56966622-56966641 | None:intergenic | 50.0% |
! | CTTGGCGTTGAAGGAGTGAA+CGG | + | chr7_4:56966623-56966642 | None:intergenic | 50.0% |
GTTCACTCCTTCAACGCCAA+GGG | - | chr7_4:56966622-56966641 | Msa1165110:intron | 50.0% | |
! | GCTGTGGGTATCGTTGCTGT+TGG | - | chr7_4:56961754-56961773 | Msa1165110:three_prime_UTR | 55.0% |
CCAAGCTTTGCTTCCGGAAG+TGG | + | chr7_4:56964046-56964065 | None:intergenic | 55.0% | |
CCACTTCCGGAAGCAAAGCT+TGG | - | chr7_4:56964043-56964062 | Msa1165110:intron | 55.0% | |
CTTCAACTAGGCTTCGTCCC+GGG | - | chr7_4:56964068-56964087 | Msa1165110:intron | 55.0% | |
TTCAACTAGGCTTCGTCCCG+GGG | - | chr7_4:56964069-56964088 | Msa1165110:intron | 55.0% | |
CGGGGATTGGGTAATAGCCA+TGG | - | chr7_4:56964087-56964106 | Msa1165110:intron | 55.0% | |
AAGGGAATGCGGACAACCCA+TGG | + | chr7_4:56964107-56964126 | None:intergenic | 55.0% | |
!! | AGTGTTGGCTGCTGATGGGT+TGG | - | chr7_4:56964572-56964591 | Msa1165110:intron | 55.0% |
!! | GTGTTGGCTGCTGATGGGTT+GGG | - | chr7_4:56964573-56964592 | Msa1165110:intron | 55.0% |
TCAGGAGAGTGATACGGCCA+TGG | - | chr7_4:56964938-56964957 | Msa1165110:intron | 55.0% | |
AGAGTGATACGGCCATGGCT+TGG | - | chr7_4:56964943-56964962 | Msa1165110:intron | 55.0% | |
! | CAAAGTTGGGGTGCCCATGA+AGG | - | chr7_4:56966321-56966340 | Msa1165110:intron | 55.0% |
!! | GGTCAAGTTGGTAGAGCCAG+AGG | + | chr7_4:56966535-56966554 | None:intergenic | 55.0% |
AGGAGTGAACGGGAGGAAGA+GGG | + | chr7_4:56966612-56966631 | None:intergenic | 55.0% | |
AAGGAGTGAACGGGAGGAAG+AGG | + | chr7_4:56966613-56966632 | None:intergenic | 55.0% | |
CGTTCACTCCTTCAACGCCA+AGG | - | chr7_4:56966621-56966640 | Msa1165110:intron | 55.0% | |
! | TTTAGGGCCCTTGGCGTTGA+AGG | + | chr7_4:56966632-56966651 | None:intergenic | 55.0% |
TCAACGCCAAGGGCCCTAAA+TGG | - | chr7_4:56966632-56966651 | Msa1165110:exon | 55.0% | |
! | TCCTCTCCATTTAGGGCCCT+TGG | + | chr7_4:56966641-56966660 | None:intergenic | 55.0% |
AAGCTCTGCCGTTGGAGCTG+TGG | - | chr7_4:56961738-56961757 | Msa1165110:three_prime_UTR | 60.0% | |
AGCTCTGCCGTTGGAGCTGT+GGG | - | chr7_4:56961739-56961758 | Msa1165110:three_prime_UTR | 60.0% | |
TAGGCTTCGTCCCGGGGATT+GGG | - | chr7_4:56964075-56964094 | Msa1165110:intron | 60.0% | |
TAGGTAACTCCTGGGTCCCC+TGG | - | chr7_4:56965870-56965889 | Msa1165110:CDS | 60.0% | |
GAACCCAGCACGATCACCAG+GGG | + | chr7_4:56965889-56965908 | None:intergenic | 60.0% | |
GGAACCCAGCACGATCACCA+GGG | + | chr7_4:56965890-56965909 | None:intergenic | 60.0% | |
! | GCCCGTGGAAAGCATGAAGG+AGG | - | chr7_4:56965944-56965963 | Msa1165110:CDS | 60.0% |
GCGTTGAAGGAGTGAACGGG+AGG | + | chr7_4:56966619-56966638 | None:intergenic | 60.0% | |
GCCAAGGGCCCTAAATGGAG+AGG | - | chr7_4:56966637-56966656 | Msa1165110:exon | 60.0% | |
CTAGGCTTCGTCCCGGGGAT+TGG | - | chr7_4:56964074-56964093 | Msa1165110:intron | 65.0% | |
GGTCCCCTGGTGATCGTGCT+GGG | - | chr7_4:56965883-56965902 | Msa1165110:CDS | 65.0% | |
CGGAACCCAGCACGATCACC+AGG | + | chr7_4:56965891-56965910 | None:intergenic | 65.0% | |
GATCGTGCTGGGTTCCGTCC+TGG | - | chr7_4:56965894-56965913 | Msa1165110:CDS | 65.0% | |
GCACGATCACCAGGGGACCC+AGG | + | chr7_4:56965882-56965901 | None:intergenic | 70.0% | |
GGGTCCCCTGGTGATCGTGC+TGG | - | chr7_4:56965882-56965901 | Msa1165110:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 56961541 | 56966717 | 56961541 | ID=Msa1165110;Name=Msa1165110 |
chr7_4 | mRNA | 56961541 | 56966717 | 56961541 | ID=Msa1165110-mRNA-1;Parent=Msa1165110;Name=Msa1165110-mRNA-1;_AED=0.23;_eAED=0.23;_QI=72|1|1|1|0.8|0.72|11|300|433 |
chr7_4 | exon | 56961541 | 56961957 | 56961541 | ID=Msa1165110-mRNA-1:exon:17088;Parent=Msa1165110-mRNA-1 |
chr7_4 | exon | 56962293 | 56962385 | 56962293 | ID=Msa1165110-mRNA-1:exon:17087;Parent=Msa1165110-mRNA-1 |
chr7_4 | exon | 56963196 | 56963316 | 56963196 | ID=Msa1165110-mRNA-1:exon:17086;Parent=Msa1165110-mRNA-1 |
chr7_4 | exon | 56963606 | 56963748 | 56963606 | ID=Msa1165110-mRNA-1:exon:17085;Parent=Msa1165110-mRNA-1 |
chr7_4 | exon | 56963860 | 56963941 | 56963860 | ID=Msa1165110-mRNA-1:exon:17084;Parent=Msa1165110-mRNA-1 |
chr7_4 | exon | 56964103 | 56964314 | 56964103 | ID=Msa1165110-mRNA-1:exon:17083;Parent=Msa1165110-mRNA-1 |
chr7_4 | exon | 56965574 | 56965701 | 56965574 | ID=Msa1165110-mRNA-1:exon:17082;Parent=Msa1165110-mRNA-1 |
chr7_4 | exon | 56965789 | 56965968 | 56965789 | ID=Msa1165110-mRNA-1:exon:17081;Parent=Msa1165110-mRNA-1 |
chr7_4 | exon | 56966071 | 56966181 | 56966071 | ID=Msa1165110-mRNA-1:exon:17080;Parent=Msa1165110-mRNA-1 |
chr7_4 | exon | 56966444 | 56966543 | 56966444 | ID=Msa1165110-mRNA-1:exon:17079;Parent=Msa1165110-mRNA-1 |
chr7_4 | exon | 56966631 | 56966717 | 56966631 | ID=Msa1165110-mRNA-1:exon:17078;Parent=Msa1165110-mRNA-1 |
chr7_4 | five_prime_UTR | 56966646 | 56966717 | 56966646 | ID=Msa1165110-mRNA-1:five_prime_utr;Parent=Msa1165110-mRNA-1 |
chr7_4 | CDS | 56966631 | 56966645 | 56966631 | ID=Msa1165110-mRNA-1:cds;Parent=Msa1165110-mRNA-1 |
chr7_4 | CDS | 56966444 | 56966543 | 56966444 | ID=Msa1165110-mRNA-1:cds;Parent=Msa1165110-mRNA-1 |
chr7_4 | CDS | 56966071 | 56966181 | 56966071 | ID=Msa1165110-mRNA-1:cds;Parent=Msa1165110-mRNA-1 |
chr7_4 | CDS | 56965789 | 56965968 | 56965789 | ID=Msa1165110-mRNA-1:cds;Parent=Msa1165110-mRNA-1 |
chr7_4 | CDS | 56965574 | 56965701 | 56965574 | ID=Msa1165110-mRNA-1:cds;Parent=Msa1165110-mRNA-1 |
chr7_4 | CDS | 56964103 | 56964314 | 56964103 | ID=Msa1165110-mRNA-1:cds;Parent=Msa1165110-mRNA-1 |
chr7_4 | CDS | 56963860 | 56963941 | 56963860 | ID=Msa1165110-mRNA-1:cds;Parent=Msa1165110-mRNA-1 |
chr7_4 | CDS | 56963606 | 56963748 | 56963606 | ID=Msa1165110-mRNA-1:cds;Parent=Msa1165110-mRNA-1 |
chr7_4 | CDS | 56963196 | 56963316 | 56963196 | ID=Msa1165110-mRNA-1:cds;Parent=Msa1165110-mRNA-1 |
chr7_4 | CDS | 56962293 | 56962385 | 56962293 | ID=Msa1165110-mRNA-1:cds;Parent=Msa1165110-mRNA-1 |
chr7_4 | CDS | 56961841 | 56961957 | 56961841 | ID=Msa1165110-mRNA-1:cds;Parent=Msa1165110-mRNA-1 |
chr7_4 | three_prime_UTR | 56961541 | 56961840 | 56961541 | ID=Msa1165110-mRNA-1:three_prime_utr;Parent=Msa1165110-mRNA-1 |
Gene Sequence |
Protein sequence |