AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1039370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1039370 MtrunA17_Chr7g0272621 96.536 433 15 0 1 433 1 433 0.0 847
Msa1039370 MtrunA17_Chr6g0450671 30.255 314 173 11 128 418 128 418 3.09e-32 127
Msa1039370 MtrunA17_Chr6g0453121 28.571 308 182 10 147 430 165 458 4.79e-30 121
Msa1039370 MtrunA17_Chr2g0285791 35.519 183 108 5 147 320 133 314 2.35e-22 97.4
Msa1039370 MtrunA17_Chr5g0426331 27.143 280 159 7 167 415 137 402 3.35e-19 89.4
Msa1039370 MtrunA17_Chr5g0426381 35.135 111 71 1 308 417 1 111 2.13e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1039370 AT5G27660.2 61.556 437 155 5 1 430 2 432 0.0 528
Msa1039370 AT5G27660.1 62.118 425 142 6 13 430 9 421 0.0 511
Msa1039370 AT3G27925.1 31.193 327 178 11 128 429 135 439 4.91e-34 132
Msa1039370 AT3G27925.2 31.193 327 178 11 128 429 135 439 4.91e-34 132
Msa1039370 AT5G39830.1 29.545 308 179 10 147 430 155 448 4.77e-31 124
Msa1039370 AT5G39830.2 28.525 305 172 10 147 430 155 434 1.15e-26 111
Msa1039370 AT4G18370.1 36.458 192 110 6 147 328 131 320 2.05e-21 94.7

Find 149 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTGAGATCCTCTCCATTT+AGG 0.184232 7_1:+76523496 None:intergenic
CGTTGAAGAGTGTAGAATTT+TGG 0.246728 7_1:-76528471 Msa1039370:five_prime_UTR
GTTGAGATCCTCTCCATTTA+GGG 0.246868 7_1:+76523497 None:intergenic
TTCATTCCCTAATGTCAATA+AGG 0.269170 7_1:-76525119 Msa1039370:CDS
TGTATGGCACAGGGAAATTC+TGG 0.299439 7_1:-76525644 Msa1039370:intron
TCCTTCTTCGGACATGTCTA+AGG 0.307102 7_1:-76527714 Msa1039370:CDS
ATTGGCTTTGTAGATTTCTA+TGG 0.309418 7_1:-76527497 Msa1039370:intron
TGGAGGGCCACTTGTCAATA+TGG 0.315113 7_1:-76525624 Msa1039370:CDS
TCAACGCCAAGGGCCCTAAA+TGG 0.323892 7_1:-76523510 Msa1039370:three_prime_UTR
CTAGGCTTCGTCCCGGGGAT+TGG 0.328014 7_1:-76526068 Msa1039370:CDS
TGACCGTAAAAGCAGTGATT+TGG 0.333135 7_1:-76525819 Msa1039370:CDS
TGCGACTTTAACTGTGATTC+CGG 0.336668 7_1:-76523771 Msa1039370:CDS
AGAATGCCCTTATTGACATT+AGG 0.346180 7_1:+76525112 None:intergenic
ATCTATCATGAGTTATTTCC+TGG 0.355463 7_1:-76528441 Msa1039370:intron
GGGTCCCCTGGTGATCGTGC+TGG 0.357975 7_1:-76524260 Msa1039370:CDS
GAATGCCCTTATTGACATTA+GGG 0.359755 7_1:+76525113 None:intergenic
AAGCCATCTAAGGATACTTT+TGG 0.364970 7_1:-76527662 Msa1039370:CDS
GACATGTCTAAGGAATCTTC+TGG 0.365161 7_1:-76527704 Msa1039370:CDS
GACCGTAAAAGCAGTGATTT+GGG 0.371160 7_1:-76525818 Msa1039370:CDS
ATCTGTTTGTAAATACTCTC+TGG 0.378364 7_1:+76525781 None:intergenic
TGATGAATCAAAGCCATCTA+AGG 0.379781 7_1:-76527672 Msa1039370:CDS
AGCAGTGATTTGGGATTTAG+TGG 0.380979 7_1:-76525809 Msa1039370:CDS
GATGTTGTCATTGAATTTGA+TGG 0.389841 7_1:-76524224 Msa1039370:CDS
AAGGAGTGAACGGGAGGAAG+AGG 0.389975 7_1:+76523532 None:intergenic
AGTTAGCCCTGTTCCTTCTT+CGG 0.392277 7_1:-76527726 Msa1039370:CDS
TTGAACACAAACCTTCCCTT+TGG 0.396372 7_1:+76527367 None:intergenic
AAATGATGGTGGACAAAGTT+GGG 0.397529 7_1:-76523835 Msa1039370:CDS
TAGGCTTCGTCCCGGGGATT+GGG 0.404252 7_1:-76526067 Msa1039370:CDS
ATGTGAACAAGTGATATATT+TGG 0.407669 7_1:-76523657 Msa1039370:three_prime_UTR
CAAAGCTTGGTTCTTCAACT+AGG 0.415056 7_1:-76526086 Msa1039370:CDS
TCCTCTCCATTTAGGGCCCT+TGG 0.417772 7_1:+76523504 None:intergenic
CCAAGCTTTGCTTCCGGAAG+TGG 0.420101 7_1:+76526099 None:intergenic
AAATTCTGAAACCCCACTTC+CGG 0.423531 7_1:-76526112 Msa1039370:CDS
CAAGATGGAAGGACATTTGA+GGG 0.423591 7_1:-76526183 Msa1039370:CDS
TTTAGGGCCCTTGGCGTTGA+AGG 0.425402 7_1:+76523513 None:intergenic
CTTCAACTAGGCTTCGTCCC+GGG 0.427401 7_1:-76526074 Msa1039370:CDS
CGGAACCCAGCACGATCACC+AGG 0.431496 7_1:+76524254 None:intergenic
TGCCATTGCAAGATATATCA+TGG 0.437451 7_1:-76527943 Msa1039370:CDS
CTACCAAAAGTATCCTTAGA+TGG 0.439534 7_1:+76527659 None:intergenic
TCATTCCCTAATGTCAATAA+GGG 0.444524 7_1:-76525118 Msa1039370:CDS
GGAATCCAATCTCAGCTTGT+AGG 0.450834 7_1:-76523747 Msa1039370:exon
AACTAATGACTAAAGTGAAC+GGG 0.452413 7_1:+76523475 None:intergenic
AGTCTCCTACAAGCTGAGAT+TGG 0.457251 7_1:+76523742 None:intergenic
GGTCCCCTGGTGATCGTGCT+GGG 0.461837 7_1:-76524259 Msa1039370:CDS
ACTGGAATTAGTGTGGTTAT+CGG 0.462039 7_1:+76528253 None:intergenic
ACATGTCTAAGGAATCTTCT+GGG 0.468550 7_1:-76527703 Msa1039370:CDS
GTTGGAGGTTATTGAAATGA+TGG 0.469435 7_1:-76523849 Msa1039370:intron
GAAGAACCAAGCTTTGCTTC+CGG 0.472595 7_1:+76526093 None:intergenic
GTGGACGTAACAAATCAAAC+GGG 0.472824 7_1:+76527906 None:intergenic
TTTGCTACAGGGAAGAGTAT+TGG 0.475530 7_1:-76527473 Msa1039370:CDS
TAGGTAACTCCTGGGTCCCC+TGG 0.475953 7_1:-76524272 Msa1039370:CDS
AGTGTTGGCTGCTGATGGGT+TGG 0.476294 7_1:-76525570 Msa1039370:CDS
AGGAGTGAACGGGAGGAAGA+GGG 0.476400 7_1:+76523533 None:intergenic
ATAGAGCATTTCAAGAAAAG+TGG 0.478194 7_1:-76525512 Msa1039370:CDS
TGTGGACGTAACAAATCAAA+CGG 0.478244 7_1:+76527905 None:intergenic
GTGTTGGCTGCTGATGGGTT+GGG 0.482417 7_1:-76525569 Msa1039370:CDS
GACATGTCCGAAGAAGGAAC+AGG 0.489693 7_1:+76527719 None:intergenic
TACCTCCTTCATGCTTTCCA+CGG 0.491263 7_1:+76524196 None:intergenic
CAAGCTTTGCTTCCGGAAGT+GGG 0.491393 7_1:+76526100 None:intergenic
AGCTCTGCCGTTGGAGCTGT+GGG 0.496151 7_1:-76528308 Msa1039370:CDS
GATCGTGCTGGGTTCCGTCC+TGG 0.498642 7_1:-76524248 Msa1039370:CDS
TTGGCGTTGAAGGAGTGAAC+GGG 0.499034 7_1:+76523523 None:intergenic
GCAAGATGGAAGGACATTTG+AGG 0.500220 7_1:-76526184 Msa1039370:CDS
ATTGAAGTCACTTTGCAAGA+TGG 0.504105 7_1:-76526198 Msa1039370:CDS
CGGGGATTGGGTAATAGCCA+TGG 0.506433 7_1:-76526055 Msa1039370:CDS
ATCGAAATATTAACAACAGC+AGG 0.506520 7_1:+76527602 None:intergenic
CCACTTCCGGAAGCAAAGCT+TGG 0.510741 7_1:-76526099 Msa1039370:CDS
AAGGACATTTGAGGGGAAAG+TGG 0.512120 7_1:-76526175 Msa1039370:CDS
AGAGTGATACGGCCATGGCT+TGG 0.514213 7_1:-76525199 Msa1039370:CDS
GGAACAATCATTAACAAAGA+TGG 0.515974 7_1:-76527446 Msa1039370:CDS
ATGAAAGTGTTGGCTGCTGA+TGG 0.519245 7_1:-76525575 Msa1039370:CDS
TTCAACTAGGCTTCGTCCCG+GGG 0.519860 7_1:-76526073 Msa1039370:CDS
AAGCTCTGCCGTTGGAGCTG+TGG 0.521174 7_1:-76528309 Msa1039370:CDS
GCAAATGCTGCTGCTAAAGT+TGG 0.521599 7_1:-76527626 Msa1039370:CDS
CGTTCACTCCTTCAACGCCA+AGG 0.524270 7_1:-76523521 Msa1039370:three_prime_UTR
GAAATGATGGTGGACAAAGT+TGG 0.526009 7_1:-76523836 Msa1039370:CDS
TCCTTAGACATGTCCGAAGA+AGG 0.531571 7_1:+76527713 None:intergenic
ACCTCCTTCATGCTTTCCAC+GGG 0.531605 7_1:+76524197 None:intergenic
GCACAAAAGGTTCATCCAAA+GGG 0.534147 7_1:-76527382 Msa1039370:CDS
CATGAAAATCAACGACAACA+TGG 0.539853 7_1:+76527405 None:intergenic
TCTTCAACTAGGCTTCGTCC+CGG 0.539957 7_1:-76526075 Msa1039370:CDS
TCAGGAGAGTGATACGGCCA+TGG 0.540162 7_1:-76525204 Msa1039370:intron
ACAGGGAAGAGTATTGGCTC+TGG 0.541432 7_1:-76527467 Msa1039370:CDS
CTGTCACTGCTGGTATTGTA+AGG 0.545354 7_1:-76526008 Msa1039370:intron
CATGGCTATTACCCAATCCC+CGG 0.547015 7_1:+76526056 None:intergenic
AAGGGAATGCGGACAACCCA+TGG 0.551296 7_1:+76526038 None:intergenic
GGCACAAAAGGTTCATCCAA+AGG 0.554675 7_1:-76527383 Msa1039370:CDS
TAAGGGCATTCTTGTACCAA+TGG 0.554993 7_1:-76525101 Msa1039370:intron
TTGAACAGAAGCTCTGCCGT+TGG 0.555512 7_1:-76528317 Msa1039370:CDS
GGGCCACTTGTCAATATGGA+TGG 0.558327 7_1:-76525620 Msa1039370:CDS
GTTCACTCCTTCAACGCCAA+GGG 0.561597 7_1:-76523520 Msa1039370:three_prime_UTR
CTTCAGAATACTGTCACTGC+TGG 0.562372 7_1:-76526018 Msa1039370:CDS
TAGAGCATTTCAAGAAAAGT+GGG 0.563537 7_1:-76525511 Msa1039370:intron
ACACACAGAGTCGATTGGTA+CGG 0.565045 7_1:+76525541 None:intergenic
AGATATATCATGGTTGACAT+TGG 0.565755 7_1:-76527933 Msa1039370:CDS
AACCATGATATATCTTGCAA+TGG 0.566757 7_1:+76527941 None:intergenic
GATATATCTTGCAATGGCAA+AGG 0.570631 7_1:+76527947 None:intergenic
CAGCAGTGACAGTATTCTGA+AGG 0.571751 7_1:+76526019 None:intergenic
TAGGAACGTTCGTACGTGTG+CGG 0.573882 7_1:-76527973 Msa1039370:CDS
AATATGGATGGAGAAATTGT+TGG 0.576439 7_1:-76525608 Msa1039370:CDS
TCTGTTTGTAAATACTCTCT+GGG 0.577942 7_1:+76525782 None:intergenic
AACGATACCCACAGCTCCAA+CGG 0.578717 7_1:+76528301 None:intergenic
GCTGTGGGTATCGTTGCTGT+TGG 0.578767 7_1:-76528293 Msa1039370:CDS
AAGCTGAGATTGGATTCCTC+CGG 0.580230 7_1:+76523752 None:intergenic
AAGTCACTTTGCAAGATGGA+AGG 0.582092 7_1:-76526194 Msa1039370:CDS
CTTGGCGTTGAAGGAGTGAA+CGG 0.585542 7_1:+76523522 None:intergenic
AAACTAATGACTAAAGTGAA+CGG 0.587325 7_1:+76523474 None:intergenic
GGGGATTGGGTAATAGCCAT+GGG 0.587526 7_1:-76526054 Msa1039370:CDS
ATGAAAATCAACGACAACAT+GGG 0.587711 7_1:+76527406 None:intergenic
AAAAGGTTCATCCAAAGGGA+AGG 0.590674 7_1:-76527378 Msa1039370:intron
ATGGCTATTACCCAATCCCC+GGG 0.595774 7_1:+76526057 None:intergenic
GGTCAAGTTGGTAGAGCCAG+AGG 0.599131 7_1:+76523610 None:intergenic
CATGTCTAAGGAATCTTCTG+GGG 0.599417 7_1:-76527702 Msa1039370:CDS
TGAAAGTGTTGGCTGCTGAT+GGG 0.600081 7_1:-76525574 Msa1039370:CDS
GAACCCAGCACGATCACCAG+GGG 0.600193 7_1:+76524256 None:intergenic
GCACGATCACCAGGGGACCC+AGG 0.601429 7_1:+76524263 None:intergenic
ATTGCTCACTGGAATTAGTG+TGG 0.602326 7_1:+76528246 None:intergenic
TCTCCATCCATATTGACAAG+TGG 0.603386 7_1:+76525617 None:intergenic
CAAAGTTGGGGTGCCCATGA+AGG 0.604534 7_1:-76523822 Msa1039370:CDS
AACAGATTGTGCAATTAATG+TGG 0.605597 7_1:-76525765 Msa1039370:intron
TGAATTTGATGGAAAGCCCG+TGG 0.609844 7_1:-76524213 Msa1039370:CDS
TGGTCGAAAGACGACAAATG+TGG 0.613228 7_1:+76527887 None:intergenic
AAAGCCCGTGGAAAGCATGA+AGG 0.616163 7_1:-76524201 Msa1039370:CDS
AAGCTTTGCTTCCGGAAGTG+GGG 0.621714 7_1:+76526101 None:intergenic
TTGTCGTCTTTCGACCAACA+TGG 0.625198 7_1:-76527881 Msa1039370:intron
CACTGAAAAGGTTGTGACAG+TGG 0.627131 7_1:-76528509 Msa1039370:five_prime_UTR
AATTCAATGACAACATCACC+AGG 0.627515 7_1:+76524230 None:intergenic
AGCATTCTTAGTCCAAGCCA+TGG 0.630955 7_1:+76525187 None:intergenic
GGAGGTTATTGAAATGATGG+TGG 0.634489 7_1:-76523846 Msa1039370:intron
TTGATGGTGTACAACAAAGC+TGG 0.638889 7_1:+76523570 None:intergenic
AGCAGTGACAGTATTCTGAA+GGG 0.641778 7_1:+76526020 None:intergenic
GTTAATATTTCGATTCCACA+AGG 0.645580 7_1:-76527593 Msa1039370:intron
GCCAAGGGCCCTAAATGGAG+AGG 0.645596 7_1:-76523505 Msa1039370:three_prime_UTR
AGAAAGAGGACAAACCATGT+TGG 0.646314 7_1:+76527867 None:intergenic
GGAACCCAGCACGATCACCA+GGG 0.647337 7_1:+76524255 None:intergenic
GACTTTAACTGTGATTCCGG+AGG 0.651382 7_1:-76523768 Msa1039370:CDS
ACAGTATTCTGAAGGGAATG+CGG 0.654266 7_1:+76526027 None:intergenic
ATGGCACAGGGAAATTCTGG+AGG 0.659592 7_1:-76525641 Msa1039370:intron
CAATGACAACATCACCAGGA+CGG 0.663393 7_1:+76524234 None:intergenic
GCCCGTGGAAAGCATGAAGG+AGG 0.665398 7_1:-76524198 Msa1039370:intron
AACTTGTCATCAATGAAACA+AGG 0.669183 7_1:+76523683 None:intergenic
ATGTCTAAGGAATCTTCTGG+GGG 0.674606 7_1:-76527701 Msa1039370:CDS
AGTGAACATCATGAAAGTGT+TGG 0.676552 7_1:-76525585 Msa1039370:CDS
GCGTTGAAGGAGTGAACGGG+AGG 0.677613 7_1:+76523526 None:intergenic
ACATGTCCGAAGAAGGAACA+GGG 0.682454 7_1:+76527720 None:intergenic
TGGCACAGGGAAATTCTGGA+GGG 0.686679 7_1:-76525640 Msa1039370:intron
AAGATGGAAGGACATTTGAG+GGG 0.693003 7_1:-76526182 Msa1039370:CDS
AATGATGGTGGACAAAGTTG+GGG 0.709009 7_1:-76523834 Msa1039370:CDS
TGGACGTAACAAATCAAACG+GGG 0.745894 7_1:+76527907 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAAAGTAAAAGAAAAT+AGG + chr7_1:76526016-76526035 None:intergenic 10.0%
!!! TTTTTTTATAACAATAACAA+CGG - chr7_1:76527416-76527435 Msa1039370:CDS 10.0%
!! TAATCTTGAAATAAAGTTAA+TGG - chr7_1:76523754-76523773 Msa1039370:CDS 15.0%
!!! TATTTTCAGAATAATTTTCT+AGG + chr7_1:76527185-76527204 None:intergenic 15.0%
!! TAAGATAAAATAAAATGATC+TGG - chr7_1:76527842-76527861 Msa1039370:intron 15.0%
!! AAGATAAAATAAAATGATCT+GGG - chr7_1:76527843-76527862 Msa1039370:intron 15.0%
!! AATAATCAATTCATCTAACA+TGG - chr7_1:76523946-76523965 Msa1039370:intron 20.0%
!!! ATTTAGAACTGAAAATTTGT+AGG - chr7_1:76524178-76524197 Msa1039370:intron 20.0%
!!! TTTAGAACTGAAAATTTGTA+GGG - chr7_1:76524179-76524198 Msa1039370:intron 20.0%
!! AAGAAATATATCTTGAATTG+TGG + chr7_1:76525128-76525147 None:intergenic 20.0%
!! TGTTAAATCTAACATTGAAA+TGG + chr7_1:76526042-76526061 None:intergenic 20.0%
!!! CTGATTTTTTAAATGTCTTT+TGG - chr7_1:76526066-76526085 Msa1039370:CDS 20.0%
!!! TTCATGTATTGTATGATTTT+TGG - chr7_1:76526098-76526117 Msa1039370:CDS 20.0%
!! GATCATAATATATCCATAAA+AGG + chr7_1:76526629-76526648 None:intergenic 20.0%
!!! AGTAAACTTTTTTTCTTTTC+AGG - chr7_1:76526729-76526748 Msa1039370:intron 20.0%
!! AAAATTACACAAAACATAAG+CGG + chr7_1:76527496-76527515 None:intergenic 20.0%
!!! AAATTTAAACGTTTTTGACT+AGG - chr7_1:76527660-76527679 Msa1039370:CDS 20.0%
!! AGATAAAATAAAATGATCTG+GGG - chr7_1:76527844-76527863 Msa1039370:intron 20.0%
!! CAAACTTATACTAATCTTTA+GGG - chr7_1:76527912-76527931 Msa1039370:CDS 20.0%
! AGAAAGAATTAACAAATACC+AGG + chr7_1:76523531-76523550 None:intergenic 25.0%
! TGGTATATACTAACTAGTTA+TGG + chr7_1:76525108-76525127 None:intergenic 25.0%
! AATTCAATTGTTAGAGTGAT+AGG + chr7_1:76525246-76525265 None:intergenic 25.0%
! TATTAAAAGTGAATGTGGAA+AGG + chr7_1:76525278-76525297 None:intergenic 25.0%
!!! TCCACATTCACTTTTAATAA+TGG - chr7_1:76525279-76525298 Msa1039370:intron 25.0%
!!! CCACATTCACTTTTAATAAT+GGG - chr7_1:76525280-76525299 Msa1039370:intron 25.0%
! AGGATGTTAAGAAAGATAAA+GGG + chr7_1:76525344-76525363 None:intergenic 25.0%
! TCTTGATATTCTTATGTTGT+AGG - chr7_1:76525509-76525528 Msa1039370:intron 25.0%
!! TTGAGTCTTAAATGATTTTC+AGG + chr7_1:76525618-76525637 None:intergenic 25.0%
! AAAGAAAATAGGTTAAAACC+AGG + chr7_1:76526005-76526024 None:intergenic 25.0%
! TTCAGATTGTCACATATAAA+CGG + chr7_1:76526550-76526569 None:intergenic 25.0%
!! CTTACAATTTTCACCTTTTA+TGG - chr7_1:76526613-76526632 Msa1039370:intron 25.0%
! GTCAATCAAAATTGTTTATG+CGG + chr7_1:76526651-76526670 None:intergenic 25.0%
!! TTGATTGACATACTTTTATG+TGG - chr7_1:76526662-76526681 Msa1039370:intron 25.0%
! CATCTAAAGATCGATTAATT+GGG + chr7_1:76526882-76526901 None:intergenic 25.0%
!! ATACTTGTTACTATCATACT+TGG - chr7_1:76527127-76527146 Msa1039370:intron 25.0%
! TTTGATCTATCAATAAGATG+AGG + chr7_1:76527210-76527229 None:intergenic 25.0%
! ATTACAAATCAAAGAGAAGA+TGG - chr7_1:76527304-76527323 Msa1039370:intron 25.0%
! CCTAAAGATTAGTATAAGTT+TGG + chr7_1:76527914-76527933 None:intergenic 25.0%
! CCAAACTTATACTAATCTTT+AGG - chr7_1:76527911-76527930 Msa1039370:CDS 25.0%
! CATAATGAAGAATAATCTCA+CGG + chr7_1:76528036-76528055 None:intergenic 25.0%
! TCACATAGATGTAAAATTGT+TGG - chr7_1:76528084-76528103 Msa1039370:intron 25.0%
! ATGTGAACAAGTGATATATT+TGG - chr7_1:76528294-76528313 Msa1039370:CDS 25.0%
! AAACTAATGACTAAAGTGAA+CGG + chr7_1:76528480-76528499 None:intergenic 25.0%
! ATCTATCATGAGTTATTTCC+TGG - chr7_1:76523510-76523529 Msa1039370:three_prime_UTR 30.0%
! TTGAAGAATCTCTCTGATTT+TGG - chr7_1:76523577-76523596 Msa1039370:three_prime_UTR 30.0%
! TGAAGAATCTCTCTGATTTT+GGG - chr7_1:76523578-76523597 Msa1039370:three_prime_UTR 30.0%
AGATTTAGTTAATTGCTCAC+TGG + chr7_1:76523719-76523738 None:intergenic 30.0%
! TTAATGGCATGCTTTTCAAT+TGG - chr7_1:76523770-76523789 Msa1039370:CDS 30.0%
AATATTGACGATGCATACAA+AGG - chr7_1:76523910-76523929 Msa1039370:intron 30.0%
TCTAACATGGCTTCAAATTT+AGG - chr7_1:76523959-76523978 Msa1039370:intron 30.0%
AACCATGATATATCTTGCAA+TGG + chr7_1:76524013-76524032 None:intergenic 30.0%
AGATATATCATGGTTGACAT+TGG - chr7_1:76524018-76524037 Msa1039370:intron 30.0%
TAAAAGTTCAAACCAGAAAG+AGG + chr7_1:76524101-76524120 None:intergenic 30.0%
ATCGAAATATTAACAACAGC+AGG + chr7_1:76524352-76524371 None:intergenic 30.0%
GTTAATATTTCGATTCCACA+AGG - chr7_1:76524358-76524377 Msa1039370:intron 30.0%
AACGATTCATTCAGATGAAA+AGG + chr7_1:76524392-76524411 None:intergenic 30.0%
!! ATTGGCTTTGTAGATTTCTA+TGG - chr7_1:76524454-76524473 Msa1039370:intron 30.0%
!! ATTTCTATGGTTTTGCTACA+GGG - chr7_1:76524467-76524486 Msa1039370:intron 30.0%
GGAACAATCATTAACAAAGA+TGG - chr7_1:76524505-76524524 Msa1039370:intron 30.0%
ATGAAAATCAACGACAACAT+GGG + chr7_1:76524548-76524567 None:intergenic 30.0%
TTCAAGACAGTGTACATATT+TGG + chr7_1:76524626-76524645 None:intergenic 30.0%
ATATAACTGTAGCTTGATAC+TGG + chr7_1:76524760-76524779 None:intergenic 30.0%
GATGTATTTGTGCAAAACTA+AGG + chr7_1:76525016-76525035 None:intergenic 30.0%
CTACATGAGTTAGAATAAGA+CGG - chr7_1:76525080-76525099 Msa1039370:intron 30.0%
GAAAGAAAGTTCAACTGTTA+GGG + chr7_1:76525205-76525224 None:intergenic 30.0%
TGAAAGAAAGTTCAACTGTT+AGG + chr7_1:76525206-76525225 None:intergenic 30.0%
CCCATTATTAAAAGTGAATG+TGG + chr7_1:76525283-76525302 None:intergenic 30.0%
CAAGATTAGAGAGAAAATTG+TGG + chr7_1:76525311-76525330 None:intergenic 30.0%
GAGGATGTTAAGAAAGATAA+AGG + chr7_1:76525345-76525364 None:intergenic 30.0%
CTTGTAATGAGCTTATGTAT+GGG + chr7_1:76525398-76525417 None:intergenic 30.0%
ACTTGTAATGAGCTTATGTA+TGG + chr7_1:76525399-76525418 None:intergenic 30.0%
ATGATAGTTTATCATGCTGT+AGG - chr7_1:76525423-76525442 Msa1039370:intron 30.0%
ATATCAAGAACCAATTGTTC+TGG + chr7_1:76525498-76525517 None:intergenic 30.0%
ATATTGAGAACCAATTGATC+CGG + chr7_1:76525556-76525575 None:intergenic 30.0%
TCTGTTTGTAAATACTCTCT+GGG + chr7_1:76526172-76526191 None:intergenic 30.0%
ATCTGTTTGTAAATACTCTC+TGG + chr7_1:76526173-76526192 None:intergenic 30.0%
AACAGATTGTGCAATTAATG+TGG - chr7_1:76526186-76526205 Msa1039370:CDS 30.0%
ATAAACTACCCAAGTAGATA+TGG - chr7_1:76526235-76526254 Msa1039370:intron 30.0%
TCCATATTCCATATCTACTT+GGG + chr7_1:76526246-76526265 None:intergenic 30.0%
ATCCATATTCCATATCTACT+TGG + chr7_1:76526247-76526266 None:intergenic 30.0%
GTAGATATGGAATATGGATT+TGG - chr7_1:76526248-76526267 Msa1039370:intron 30.0%
AATATGGATGGAGAAATTGT+TGG - chr7_1:76526343-76526362 Msa1039370:intron 30.0%
! ATAGAGCATTTCAAGAAAAG+TGG - chr7_1:76526439-76526458 Msa1039370:intron 30.0%
! TAGAGCATTTCAAGAAAAGT+GGG - chr7_1:76526440-76526459 Msa1039370:intron 30.0%
TCCAAGCAGAAAGTTTAATT+AGG - chr7_1:76526584-76526603 Msa1039370:intron 30.0%
TGGTTAATACTTGAGTAGTT+AGG - chr7_1:76526682-76526701 Msa1039370:intron 30.0%
TTCATTCCCTAATGTCAATA+AGG - chr7_1:76526832-76526851 Msa1039370:intron 30.0%
TCATTCCCTAATGTCAATAA+GGG - chr7_1:76526833-76526852 Msa1039370:intron 30.0%
ATTAATTGGGAACATACCAT+TGG + chr7_1:76526869-76526888 None:intergenic 30.0%
GCATCTAAAGATCGATTAAT+TGG + chr7_1:76526883-76526902 None:intergenic 30.0%
! TTTTCAGAATCTAGATTCAC+AGG - chr7_1:76526915-76526934 Msa1039370:intron 30.0%
TTCAAAGTTGTTTGCAAAGT+TGG - chr7_1:76526985-76527004 Msa1039370:intron 30.0%
TTATTATGTTAGTGAAGCCA+TGG - chr7_1:76527087-76527106 Msa1039370:intron 30.0%
TATTATGTTAGTGAAGCCAT+GGG - chr7_1:76527088-76527107 Msa1039370:intron 30.0%
TGTTACTATCATACTTGGAT+AGG - chr7_1:76527132-76527151 Msa1039370:intron 30.0%
GTTACTATCATACTTGGATA+GGG - chr7_1:76527133-76527152 Msa1039370:intron 30.0%
CTAGGATTCTCACTTTAATA+GGG + chr7_1:76527167-76527186 None:intergenic 30.0%
! TCTAGGATTCTCACTTTAAT+AGG + chr7_1:76527168-76527187 None:intergenic 30.0%
AAGTGAACACAAAAACAAAG+AGG - chr7_1:76527228-76527247 Msa1039370:intron 30.0%
CGTAACTATCACAATTAGAT+AGG + chr7_1:76527382-76527401 None:intergenic 30.0%
AATGTTGTCTAATCAGAAAG+AGG + chr7_1:76527452-76527471 None:intergenic 30.0%
GAAATAATGTGTTTGTCACA+AGG - chr7_1:76527637-76527656 Msa1039370:CDS 30.0%
GATGTTGTCATTGAATTTGA+TGG - chr7_1:76527727-76527746 Msa1039370:CDS 30.0%
!!! TCGATTTTTTTTACTGTCTG+TGG + chr7_1:76528013-76528032 None:intergenic 30.0%
CATAGATGTAAAATTGTTGG+AGG - chr7_1:76528087-76528106 Msa1039370:intron 30.0%
!! CTTTTAACTACAACCTTCAT+GGG + chr7_1:76528145-76528164 None:intergenic 30.0%
!! TCTTTTAACTACAACCTTCA+TGG + chr7_1:76528146-76528165 None:intergenic 30.0%
AACTTGTCATCAATGAAACA+AGG + chr7_1:76528271-76528290 None:intergenic 30.0%
!!! CCTTTATTTTTTGGTCAAGT+TGG + chr7_1:76528356-76528375 None:intergenic 30.0%
CCAACTTGACCAAAAAATAA+AGG - chr7_1:76528353-76528372 Msa1039370:intron 30.0%
!!! CTGGTAGAACCTTTATTTTT+TGG + chr7_1:76528365-76528384 None:intergenic 30.0%
! GGAGAAAAATTTAGTGTTGA+TGG + chr7_1:76528400-76528419 None:intergenic 30.0%
AACTAATGACTAAAGTGAAC+GGG + chr7_1:76528479-76528498 None:intergenic 30.0%
!! CGTTGAAGAGTGTAGAATTT+TGG - chr7_1:76523480-76523499 Msa1039370:three_prime_UTR 35.0%
! GAAGAATCTCTCTGATTTTG+GGG - chr7_1:76523579-76523598 Msa1039370:three_prime_UTR 35.0%
! AAGAATCTCTCTGATTTTGG+GGG - chr7_1:76523580-76523599 Msa1039370:three_prime_UTR 35.0%
ACTGGAATTAGTGTGGTTAT+CGG + chr7_1:76523701-76523720 None:intergenic 35.0%
GATATATCTTGCAATGGCAA+AGG + chr7_1:76524007-76524026 None:intergenic 35.0%
TGCCATTGCAAGATATATCA+TGG - chr7_1:76524008-76524027 Msa1039370:intron 35.0%
TGTGGACGTAACAAATCAAA+CGG + chr7_1:76524049-76524068 None:intergenic 35.0%
CACATACATCTAAACATGCA+TGG + chr7_1:76524154-76524173 None:intergenic 35.0%
ACATGTCTAAGGAATCTTCT+GGG - chr7_1:76524248-76524267 Msa1039370:CDS 35.0%
TGATGAATCAAAGCCATCTA+AGG - chr7_1:76524279-76524298 Msa1039370:intron 35.0%
! AAGCCATCTAAGGATACTTT+TGG - chr7_1:76524289-76524308 Msa1039370:intron 35.0%
!! CTACCAAAAGTATCCTTAGA+TGG + chr7_1:76524295-76524314 None:intergenic 35.0%
GAAAAGGTAGAAAAACCTTG+TGG + chr7_1:76524376-76524395 None:intergenic 35.0%
!!! CTCTTTTGAGATTATGCTGA+TGG - chr7_1:76524423-76524442 Msa1039370:intron 35.0%
TTGAGATTATGCTGATGGTT+TGG - chr7_1:76524428-76524447 Msa1039370:intron 35.0%
!! GATTTCTATGGTTTTGCTAC+AGG - chr7_1:76524466-76524485 Msa1039370:intron 35.0%
CATGAAAATCAACGACAACA+TGG + chr7_1:76524549-76524568 None:intergenic 35.0%
!!! CATGTTGTCGTTGATTTTCA+TGG - chr7_1:76524547-76524566 Msa1039370:intron 35.0%
!! GTTGATTTTCATGGCACAAA+AGG - chr7_1:76524556-76524575 Msa1039370:intron 35.0%
GAAGGTTTGTGTTCAAGAAA+GGG - chr7_1:76524591-76524610 Msa1039370:intron 35.0%
AGTTCTCTGTGATGTAAATG+TGG - chr7_1:76524677-76524696 Msa1039370:intron 35.0%
! ATGTGGTAGAAGAGTACAAT+TGG - chr7_1:76524694-76524713 Msa1039370:intron 35.0%
! TGCAAACGAAACATGCTTTT+GGG + chr7_1:76524726-76524745 None:intergenic 35.0%
! ATGCAAACGAAACATGCTTT+TGG + chr7_1:76524727-76524746 None:intergenic 35.0%
CTTTGTATGACTCAAAGCTA+GGG - chr7_1:76524836-76524855 Msa1039370:intron 35.0%
GTACTTTCTGAGTCATGATT+TGG - chr7_1:76524885-76524904 Msa1039370:intron 35.0%
TGATCCATTCCCAACAAAAT+AGG - chr7_1:76524916-76524935 Msa1039370:intron 35.0%
GATCCATTCCCAACAAAATA+GGG - chr7_1:76524917-76524936 Msa1039370:intron 35.0%
! AAGCAATGCCCTATTTTGTT+GGG + chr7_1:76524928-76524947 None:intergenic 35.0%
! TAAGCAATGCCCTATTTTGT+TGG + chr7_1:76524929-76524948 None:intergenic 35.0%
! TCGTTTTCATTCAGTTCTGT+AGG + chr7_1:76524971-76524990 None:intergenic 35.0%
ACTGTAACAACCAAACCTTT+AGG - chr7_1:76525048-76525067 Msa1039370:intron 35.0%
AGTTCAACTGTTAGGGTAAA+AGG + chr7_1:76525198-76525217 None:intergenic 35.0%
AAAAGTGAATGTGGAAAGGA+AGG + chr7_1:76525274-76525293 None:intergenic 35.0%
GCTAAATGAGCTACTATACA+AGG + chr7_1:76525449-76525468 None:intergenic 35.0%
ATAGTAGCTCATTTAGCTGT+AGG - chr7_1:76525452-76525471 Msa1039370:intron 35.0%
! ATTGAAGTCACTTTGCAAGA+TGG - chr7_1:76525753-76525772 Msa1039370:intron 35.0%
!! ATCCCAAATCACTGCTTTTA+CGG + chr7_1:76526138-76526157 None:intergenic 35.0%
ATCTACTTGGGTAGTTTATG+CGG + chr7_1:76526234-76526253 None:intergenic 35.0%
ACCCAAGTAGATATGGAATA+TGG - chr7_1:76526242-76526261 Msa1039370:intron 35.0%
TTGCATGTTATCTGCTTGTA+TGG - chr7_1:76526291-76526310 Msa1039370:intron 35.0%
! AGTGAACATCATGAAAGTGT+TGG - chr7_1:76526366-76526385 Msa1039370:intron 35.0%
! ATTTTACACACAGAGTCGAT+TGG + chr7_1:76526418-76526437 None:intergenic 35.0%
AAGAAAAGTGGGTATGTTTC+TGG - chr7_1:76526451-76526470 Msa1039370:intron 35.0%
GCCTAATTAAACTTTCTGCT+TGG + chr7_1:76526588-76526607 None:intergenic 35.0%
!! TTCTTTTCAGGAGAGTGATA+CGG - chr7_1:76526741-76526760 Msa1039370:intron 35.0%
GAATGCCCTTATTGACATTA+GGG + chr7_1:76526841-76526860 None:intergenic 35.0%
AGAATGCCCTTATTGACATT+AGG + chr7_1:76526842-76526861 None:intergenic 35.0%
!! TGCTTTCTTTTGCTATGCTT+TGG - chr7_1:76527047-76527066 Msa1039370:intron 35.0%
TAATCAGAAAGAGGAGTAAG+GGG + chr7_1:76527443-76527462 None:intergenic 35.0%
CTAATCAGAAAGAGGAGTAA+GGG + chr7_1:76527444-76527463 None:intergenic 35.0%
TCTAATCAGAAAGAGGAGTA+AGG + chr7_1:76527445-76527464 None:intergenic 35.0%
TACACAAAACATAAGCGGAA+TGG + chr7_1:76527491-76527510 None:intergenic 35.0%
GAGCAACACAATGCATATTA+TGG + chr7_1:76527590-76527609 None:intergenic 35.0%
!! TTTTTGACTAGGTAACTCCT+GGG - chr7_1:76527671-76527690 Msa1039370:CDS 35.0%
AATTCAATGACAACATCACC+AGG + chr7_1:76527724-76527743 None:intergenic 35.0%
GTTGGAGGTTATTGAAATGA+TGG - chr7_1:76528102-76528121 Msa1039370:intron 35.0%
!! AAATGATGGTGGACAAAGTT+GGG - chr7_1:76528116-76528135 Msa1039370:intron 35.0%
!!! GCACAAGTTTTTTTAACCTC+TGG - chr7_1:76528325-76528344 Msa1039370:CDS 35.0%
ATTGCTCACTGGAATTAGTG+TGG + chr7_1:76523708-76523727 None:intergenic 40.0%
TGGACGTAACAAATCAAACG+GGG + chr7_1:76524047-76524066 None:intergenic 40.0%
GTGGACGTAACAAATCAAAC+GGG + chr7_1:76524048-76524067 None:intergenic 40.0%
AGAAAGAGGACAAACCATGT+TGG + chr7_1:76524087-76524106 None:intergenic 40.0%
! AACATGGTTTGTCCTCTTTC+TGG - chr7_1:76524086-76524105 Msa1039370:intron 40.0%
GACATGTCTAAGGAATCTTC+TGG - chr7_1:76524247-76524266 Msa1039370:CDS 40.0%
CATGTCTAAGGAATCTTCTG+GGG - chr7_1:76524249-76524268 Msa1039370:CDS 40.0%
ATGTCTAAGGAATCTTCTGG+GGG - chr7_1:76524250-76524269 Msa1039370:CDS 40.0%
! ATGCTGATGGTTTGGAGTAT+TGG - chr7_1:76524436-76524455 Msa1039370:intron 40.0%
! TTTGCTACAGGGAAGAGTAT+TGG - chr7_1:76524478-76524497 Msa1039370:intron 40.0%
GCACAAAAGGTTCATCCAAA+GGG - chr7_1:76524569-76524588 Msa1039370:intron 40.0%
AAAAGGTTCATCCAAAGGGA+AGG - chr7_1:76524573-76524592 Msa1039370:intron 40.0%
TTGAACACAAACCTTCCCTT+TGG + chr7_1:76524587-76524606 None:intergenic 40.0%
GGAAGGTTTGTGTTCAAGAA+AGG - chr7_1:76524590-76524609 Msa1039370:intron 40.0%
GCTTTGTATGACTCAAAGCT+AGG - chr7_1:76524835-76524854 Msa1039370:intron 40.0%
! ATGCCCTATTTTGTTGGGAA+TGG + chr7_1:76524923-76524942 None:intergenic 40.0%
AACGACGATTCTGTGAATTC+TGG - chr7_1:76524986-76525005 Msa1039370:intron 40.0%
AACAACCAAACCTTTAGGTG+AGG - chr7_1:76525053-76525072 Msa1039370:intron 40.0%
ATGTAGTTGACCTCACCTAA+AGG + chr7_1:76525066-76525085 None:intergenic 40.0%
ATCTAAATCCCTGCTAACGT+TGG - chr7_1:76525150-76525169 Msa1039370:CDS 40.0%
GACAGCAAAAAGGCAAAATG+AGG + chr7_1:76525364-76525383 None:intergenic 40.0%
CTGAAAACTCGACAGCAAAA+AGG + chr7_1:76525374-76525393 None:intergenic 40.0%
!! TTGTATAGTAGCTTGCTTGC+CGG - chr7_1:76525534-76525553 Msa1039370:CDS 40.0%
TCTGATGTCTTCATTTCACG+AGG + chr7_1:76525703-76525722 None:intergenic 40.0%
! AAGTCACTTTGCAAGATGGA+AGG - chr7_1:76525757-76525776 Msa1039370:intron 40.0%
CAAGATGGAAGGACATTTGA+GGG - chr7_1:76525768-76525787 Msa1039370:CDS 40.0%
AAGATGGAAGGACATTTGAG+GGG - chr7_1:76525769-76525788 Msa1039370:CDS 40.0%
!! AAATTCTGAAACCCCACTTC+CGG - chr7_1:76525839-76525858 Msa1039370:intron 40.0%
! CAAAGCTTGGTTCTTCAACT+AGG - chr7_1:76525865-76525884 Msa1039370:intron 40.0%
! ACAGTATTCTGAAGGGAATG+CGG + chr7_1:76525927-76525946 None:intergenic 40.0%
AGCAGTGACAGTATTCTGAA+GGG + chr7_1:76525934-76525953 None:intergenic 40.0%
GGTGCGAAGATAAAACTTTC+TGG - chr7_1:76525964-76525983 Msa1039370:intron 40.0%
TGACCGTAAAAGCAGTGATT+TGG - chr7_1:76526132-76526151 Msa1039370:CDS 40.0%
GACCGTAAAAGCAGTGATTT+GGG - chr7_1:76526133-76526152 Msa1039370:CDS 40.0%
! AGCAGTGATTTGGGATTTAG+TGG - chr7_1:76526142-76526161 Msa1039370:CDS 40.0%
TCTACTTGGGTAGTTTATGC+GGG + chr7_1:76526233-76526252 None:intergenic 40.0%
TTATCTGCTTGTATGGCACA+GGG - chr7_1:76526298-76526317 Msa1039370:intron 40.0%
TCTCCATCCATATTGACAAG+TGG + chr7_1:76526337-76526356 None:intergenic 40.0%
!! TAAGGGCATTCTTGTACCAA+TGG - chr7_1:76526850-76526869 Msa1039370:intron 40.0%
TTCACAGGACAGTATCTTCA+TGG - chr7_1:76526930-76526949 Msa1039370:intron 40.0%
TTGTGATAGTTACGTGTAGC+AGG - chr7_1:76527388-76527407 Msa1039370:CDS 40.0%
CACAATGCATATTATGGCAG+AGG + chr7_1:76527584-76527603 None:intergenic 40.0%
!! GTTTTTGACTAGGTAACTCC+TGG - chr7_1:76527670-76527689 Msa1039370:CDS 40.0%
GGAGGTTATTGAAATGATGG+TGG - chr7_1:76528105-76528124 Msa1039370:intron 40.0%
!! GAAATGATGGTGGACAAAGT+TGG - chr7_1:76528115-76528134 Msa1039370:intron 40.0%
!! AATGATGGTGGACAAAGTTG+GGG - chr7_1:76528117-76528136 Msa1039370:intron 40.0%
TGCGACTTTAACTGTGATTC+CGG - chr7_1:76528180-76528199 Msa1039370:intron 40.0%
!! TTGATGGTGTACAACAAAGC+TGG + chr7_1:76528384-76528403 None:intergenic 40.0%
GTTGAGATCCTCTCCATTTA+GGG + chr7_1:76528457-76528476 None:intergenic 40.0%
TGGTCGAAAGACGACAAATG+TGG + chr7_1:76524067-76524086 None:intergenic 45.0%
TTGTCGTCTTTCGACCAACA+TGG - chr7_1:76524070-76524089 Msa1039370:intron 45.0%
AGTTAGCCCTGTTCCTTCTT+CGG - chr7_1:76524225-76524244 Msa1039370:CDS 45.0%
ACATGTCCGAAGAAGGAACA+GGG + chr7_1:76524234-76524253 None:intergenic 45.0%
TCCTTCTTCGGACATGTCTA+AGG - chr7_1:76524237-76524256 Msa1039370:CDS 45.0%
TCCTTAGACATGTCCGAAGA+AGG + chr7_1:76524241-76524260 None:intergenic 45.0%
GCAAATGCTGCTGCTAAAGT+TGG - chr7_1:76524325-76524344 Msa1039370:intron 45.0%
GGCACAAAAGGTTCATCCAA+AGG - chr7_1:76524568-76524587 Msa1039370:intron 45.0%
! GAAGTGCTACTGTTCTTGCT+TGG - chr7_1:76524806-76524825 Msa1039370:intron 45.0%
TACTGTTCTTGCTTGGTCTG+TGG - chr7_1:76524813-76524832 Msa1039370:intron 45.0%
TGTATGACTCAAAGCTAGGG+TGG - chr7_1:76524839-76524858 Msa1039370:intron 45.0%
TAGGGTGGCTTAAGATCTGA+TGG - chr7_1:76524854-76524873 Msa1039370:intron 45.0%
AGGGTGGCTTAAGATCTGAT+GGG - chr7_1:76524855-76524874 Msa1039370:intron 45.0%
GTTGACCTCACCTAAAGGTT+TGG + chr7_1:76525061-76525080 None:intergenic 45.0%
CTCAAAGTCCAACGTTAGCA+GGG + chr7_1:76525161-76525180 None:intergenic 45.0%
ACTCAAAGTCCAACGTTAGC+AGG + chr7_1:76525162-76525181 None:intergenic 45.0%
AGTGAATGTGGAAAGGAAGG+AGG + chr7_1:76525271-76525290 None:intergenic 45.0%
! AGCTTGCTTGCCAGAACAAT+TGG - chr7_1:76525485-76525504 Msa1039370:intron 45.0%
GGCAAGCAAGCTACTATACA+AGG + chr7_1:76525535-76525554 None:intergenic 45.0%
GCAAGATGGAAGGACATTTG+AGG - chr7_1:76525767-76525786 Msa1039370:CDS 45.0%
AAGGACATTTGAGGGGAAAG+TGG - chr7_1:76525776-76525795 Msa1039370:CDS 45.0%
GAAGAACCAAGCTTTGCTTC+CGG + chr7_1:76525861-76525880 None:intergenic 45.0%
CAGCAGTGACAGTATTCTGA+AGG + chr7_1:76525935-76525954 None:intergenic 45.0%
CTTCAGAATACTGTCACTGC+TGG - chr7_1:76525933-76525952 Msa1039370:intron 45.0%
CTGTCACTGCTGGTATTGTA+AGG - chr7_1:76525943-76525962 Msa1039370:intron 45.0%
TGGCTGTAAAAGATGTCTCC+TGG - chr7_1:76525984-76526003 Msa1039370:intron 45.0%
TGGGTAGTTTATGCGGGAAA+AGG + chr7_1:76526227-76526246 None:intergenic 45.0%
GTTATCTGCTTGTATGGCAC+AGG - chr7_1:76526297-76526316 Msa1039370:intron 45.0%
TGTATGGCACAGGGAAATTC+TGG - chr7_1:76526307-76526326 Msa1039370:intron 45.0%
!! ATGAAAGTGTTGGCTGCTGA+TGG - chr7_1:76526376-76526395 Msa1039370:intron 45.0%
!! TGAAAGTGTTGGCTGCTGAT+GGG - chr7_1:76526377-76526396 Msa1039370:intron 45.0%
ACACACAGAGTCGATTGGTA+CGG + chr7_1:76526413-76526432 None:intergenic 45.0%
AGCATTCTTAGTCCAAGCCA+TGG + chr7_1:76526767-76526786 None:intergenic 45.0%
TATGTTAGTGAAGCCATGGG+CGG - chr7_1:76527091-76527110 Msa1039370:intron 45.0%
! CATTGTGTTGCTCAAATGCG+AGG - chr7_1:76527597-76527616 Msa1039370:CDS 45.0%
CAATGACAACATCACCAGGA+CGG + chr7_1:76527720-76527739 None:intergenic 45.0%
TGAATTTGATGGAAAGCCCG+TGG - chr7_1:76527738-76527757 Msa1039370:CDS 45.0%
TACCTCCTTCATGCTTTCCA+CGG + chr7_1:76527758-76527777 None:intergenic 45.0%
GATCTGGGGAGCAAAACAAT+TGG - chr7_1:76527858-76527877 Msa1039370:intron 45.0%
GACTTTAACTGTGATTCCGG+AGG - chr7_1:76528183-76528202 Msa1039370:intron 45.0%
AAGCTGAGATTGGATTCCTC+CGG + chr7_1:76528202-76528221 None:intergenic 45.0%
GGAATCCAATCTCAGCTTGT+AGG - chr7_1:76528204-76528223 Msa1039370:intron 45.0%
AGTCTCCTACAAGCTGAGAT+TGG + chr7_1:76528212-76528231 None:intergenic 45.0%
GGTTGAGATCCTCTCCATTT+AGG + chr7_1:76528458-76528477 None:intergenic 45.0%
TTGAACAGAAGCTCTGCCGT+TGG - chr7_1:76523634-76523653 Msa1039370:three_prime_UTR 50.0%
AACGATACCCACAGCTCCAA+CGG + chr7_1:76523653-76523672 None:intergenic 50.0%
TAGGAACGTTCGTACGTGTG+CGG - chr7_1:76523978-76523997 Msa1039370:intron 50.0%
GACATGTCCGAAGAAGGAAC+AGG + chr7_1:76524235-76524254 None:intergenic 50.0%
!! ACAGGGAAGAGTATTGGCTC+TGG - chr7_1:76524484-76524503 Msa1039370:intron 50.0%
! AGCTTGCTTGCCGGATCAAT+TGG - chr7_1:76525543-76525562 Msa1039370:CDS 50.0%
AAGCTTTGCTTCCGGAAGTG+GGG + chr7_1:76525853-76525872 None:intergenic 50.0%
CAAGCTTTGCTTCCGGAAGT+GGG + chr7_1:76525854-76525873 None:intergenic 50.0%
TCTTCAACTAGGCTTCGTCC+CGG - chr7_1:76525876-76525895 Msa1039370:intron 50.0%
ATGGCTATTACCCAATCCCC+GGG + chr7_1:76525897-76525916 None:intergenic 50.0%
CATGGCTATTACCCAATCCC+CGG + chr7_1:76525898-76525917 None:intergenic 50.0%
GGGGATTGGGTAATAGCCAT+GGG - chr7_1:76525897-76525916 Msa1039370:intron 50.0%
ATGGCACAGGGAAATTCTGG+AGG - chr7_1:76526310-76526329 Msa1039370:intron 50.0%
TGGCACAGGGAAATTCTGGA+GGG - chr7_1:76526311-76526330 Msa1039370:intron 50.0%
TGGAGGGCCACTTGTCAATA+TGG - chr7_1:76526327-76526346 Msa1039370:intron 50.0%
GGGCCACTTGTCAATATGGA+TGG - chr7_1:76526331-76526350 Msa1039370:intron 50.0%
GTAGAAGTTTGAACCGCCCA+TGG + chr7_1:76527107-76527126 None:intergenic 50.0%
! AAAGCCCGTGGAAAGCATGA+AGG - chr7_1:76527750-76527769 Msa1039370:CDS 50.0%
ACCTCCTTCATGCTTTCCAC+GGG + chr7_1:76527757-76527776 None:intergenic 50.0%
! TTGGCGTTGAAGGAGTGAAC+GGG + chr7_1:76528431-76528450 None:intergenic 50.0%
! CTTGGCGTTGAAGGAGTGAA+CGG + chr7_1:76528432-76528451 None:intergenic 50.0%
GTTCACTCCTTCAACGCCAA+GGG - chr7_1:76528431-76528450 Msa1039370:intron 50.0%
! GCTGTGGGTATCGTTGCTGT+TGG - chr7_1:76523658-76523677 Msa1039370:three_prime_UTR 55.0%
CCAAGCTTTGCTTCCGGAAG+TGG + chr7_1:76525855-76525874 None:intergenic 55.0%
CCACTTCCGGAAGCAAAGCT+TGG - chr7_1:76525852-76525871 Msa1039370:intron 55.0%
CTTCAACTAGGCTTCGTCCC+GGG - chr7_1:76525877-76525896 Msa1039370:intron 55.0%
TTCAACTAGGCTTCGTCCCG+GGG - chr7_1:76525878-76525897 Msa1039370:intron 55.0%
CGGGGATTGGGTAATAGCCA+TGG - chr7_1:76525896-76525915 Msa1039370:intron 55.0%
AAGGGAATGCGGACAACCCA+TGG + chr7_1:76525916-76525935 None:intergenic 55.0%
!! AGTGTTGGCTGCTGATGGGT+TGG - chr7_1:76526381-76526400 Msa1039370:intron 55.0%
!! GTGTTGGCTGCTGATGGGTT+GGG - chr7_1:76526382-76526401 Msa1039370:intron 55.0%
TCAGGAGAGTGATACGGCCA+TGG - chr7_1:76526747-76526766 Msa1039370:intron 55.0%
AGAGTGATACGGCCATGGCT+TGG - chr7_1:76526752-76526771 Msa1039370:intron 55.0%
! CAAAGTTGGGGTGCCCATGA+AGG - chr7_1:76528129-76528148 Msa1039370:intron 55.0%
!! GGTCAAGTTGGTAGAGCCAG+AGG + chr7_1:76528344-76528363 None:intergenic 55.0%
AGGAGTGAACGGGAGGAAGA+GGG + chr7_1:76528421-76528440 None:intergenic 55.0%
AAGGAGTGAACGGGAGGAAG+AGG + chr7_1:76528422-76528441 None:intergenic 55.0%
CGTTCACTCCTTCAACGCCA+AGG - chr7_1:76528430-76528449 Msa1039370:intron 55.0%
! TTTAGGGCCCTTGGCGTTGA+AGG + chr7_1:76528441-76528460 None:intergenic 55.0%
TCAACGCCAAGGGCCCTAAA+TGG - chr7_1:76528441-76528460 Msa1039370:intron 55.0%
! TCCTCTCCATTTAGGGCCCT+TGG + chr7_1:76528450-76528469 None:intergenic 55.0%
AAGCTCTGCCGTTGGAGCTG+TGG - chr7_1:76523642-76523661 Msa1039370:three_prime_UTR 60.0%
AGCTCTGCCGTTGGAGCTGT+GGG - chr7_1:76523643-76523662 Msa1039370:three_prime_UTR 60.0%
TAGGCTTCGTCCCGGGGATT+GGG - chr7_1:76525884-76525903 Msa1039370:intron 60.0%
TAGGTAACTCCTGGGTCCCC+TGG - chr7_1:76527679-76527698 Msa1039370:CDS 60.0%
GAACCCAGCACGATCACCAG+GGG + chr7_1:76527698-76527717 None:intergenic 60.0%
GGAACCCAGCACGATCACCA+GGG + chr7_1:76527699-76527718 None:intergenic 60.0%
! GCCCGTGGAAAGCATGAAGG+AGG - chr7_1:76527753-76527772 Msa1039370:CDS 60.0%
GCGTTGAAGGAGTGAACGGG+AGG + chr7_1:76528428-76528447 None:intergenic 60.0%
GCCAAGGGCCCTAAATGGAG+AGG - chr7_1:76528446-76528465 Msa1039370:exon 60.0%
CTAGGCTTCGTCCCGGGGAT+TGG - chr7_1:76525883-76525902 Msa1039370:intron 65.0%
GGTCCCCTGGTGATCGTGCT+GGG - chr7_1:76527692-76527711 Msa1039370:CDS 65.0%
CGGAACCCAGCACGATCACC+AGG + chr7_1:76527700-76527719 None:intergenic 65.0%
GATCGTGCTGGGTTCCGTCC+TGG - chr7_1:76527703-76527722 Msa1039370:CDS 65.0%
GCACGATCACCAGGGGACCC+AGG + chr7_1:76527691-76527710 None:intergenic 70.0%
GGGTCCCCTGGTGATCGTGC+TGG - chr7_1:76527691-76527710 Msa1039370:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 76523445 76528528 76523445 ID=Msa1039370;Name=Msa1039370
chr7_1 mRNA 76523445 76528528 76523445 ID=Msa1039370-mRNA-1;Parent=Msa1039370;Name=Msa1039370-mRNA-1;_AED=0.23;_eAED=0.23;_QI=72|1|1|1|0.8|0.72|11|303|433
chr7_1 exon 76523445 76523864 76523445 ID=Msa1039370-mRNA-1:exon:19897;Parent=Msa1039370-mRNA-1
chr7_1 exon 76524199 76524291 76524199 ID=Msa1039370-mRNA-1:exon:19896;Parent=Msa1039370-mRNA-1
chr7_1 exon 76525102 76525222 76525102 ID=Msa1039370-mRNA-1:exon:19895;Parent=Msa1039370-mRNA-1
chr7_1 exon 76525512 76525654 76525512 ID=Msa1039370-mRNA-1:exon:19894;Parent=Msa1039370-mRNA-1
chr7_1 exon 76525766 76525847 76525766 ID=Msa1039370-mRNA-1:exon:19893;Parent=Msa1039370-mRNA-1
chr7_1 exon 76526009 76526220 76526009 ID=Msa1039370-mRNA-1:exon:19892;Parent=Msa1039370-mRNA-1
chr7_1 exon 76527379 76527506 76527379 ID=Msa1039370-mRNA-1:exon:19891;Parent=Msa1039370-mRNA-1
chr7_1 exon 76527594 76527773 76527594 ID=Msa1039370-mRNA-1:exon:19890;Parent=Msa1039370-mRNA-1
chr7_1 exon 76527882 76527992 76527882 ID=Msa1039370-mRNA-1:exon:19889;Parent=Msa1039370-mRNA-1
chr7_1 exon 76528255 76528354 76528255 ID=Msa1039370-mRNA-1:exon:19888;Parent=Msa1039370-mRNA-1
chr7_1 exon 76528442 76528528 76528442 ID=Msa1039370-mRNA-1:exon:19887;Parent=Msa1039370-mRNA-1
chr7_1 five_prime_UTR 76528457 76528528 76528457 ID=Msa1039370-mRNA-1:five_prime_utr;Parent=Msa1039370-mRNA-1
chr7_1 CDS 76528442 76528456 76528442 ID=Msa1039370-mRNA-1:cds;Parent=Msa1039370-mRNA-1
chr7_1 CDS 76528255 76528354 76528255 ID=Msa1039370-mRNA-1:cds;Parent=Msa1039370-mRNA-1
chr7_1 CDS 76527882 76527992 76527882 ID=Msa1039370-mRNA-1:cds;Parent=Msa1039370-mRNA-1
chr7_1 CDS 76527594 76527773 76527594 ID=Msa1039370-mRNA-1:cds;Parent=Msa1039370-mRNA-1
chr7_1 CDS 76527379 76527506 76527379 ID=Msa1039370-mRNA-1:cds;Parent=Msa1039370-mRNA-1
chr7_1 CDS 76526009 76526220 76526009 ID=Msa1039370-mRNA-1:cds;Parent=Msa1039370-mRNA-1
chr7_1 CDS 76525766 76525847 76525766 ID=Msa1039370-mRNA-1:cds;Parent=Msa1039370-mRNA-1
chr7_1 CDS 76525512 76525654 76525512 ID=Msa1039370-mRNA-1:cds;Parent=Msa1039370-mRNA-1
chr7_1 CDS 76525102 76525222 76525102 ID=Msa1039370-mRNA-1:cds;Parent=Msa1039370-mRNA-1
chr7_1 CDS 76524199 76524291 76524199 ID=Msa1039370-mRNA-1:cds;Parent=Msa1039370-mRNA-1
chr7_1 CDS 76523748 76523864 76523748 ID=Msa1039370-mRNA-1:cds;Parent=Msa1039370-mRNA-1
chr7_1 three_prime_UTR 76523445 76523747 76523445 ID=Msa1039370-mRNA-1:three_prime_utr;Parent=Msa1039370-mRNA-1
Gene Sequence

>Msa1039370

ATGAGTTATTTCCTGAGTAAACTTCTGCGTTTGAACAGAAGCTCTGCCGTTGGAGCTGTGGGTATCGTTGCTGTTGGTTCAACTCTACTCTGTTCCGATAACCACACTAATTCCAGAACGTTCGTACGTGTGCGGATTCCTTTGCCATTGCAAGATATATCATGGTTGACATTGGCAACCCCGTTTGATTTGTTACGTCCACATTTGTCGTCTTTCGACCAACATGGGATTCTCGCGCTGTCTTCTTATAGAGTTAGCCCTGTTCCTTCTTCGGACATGTCTAAGGAATCTTCTGGGGGTGTTAATGATGAATCAAAGCCATCTAAGGATACTTTTGGTAGAGACACTATTGCAAATGCTGCTGCTAAAGTTGGTCCTGCTGTTGTTAATATTTCGATTCCACAAGATTTCTATGGTTTTGCTACAGGGAAGAGTATTGGCTCTGGAACAATCATTAACAAAGATGGTACAATCTTGACATGTGCCCATGTTGTCGTTGATTTTCATGGCACAAAAGGTTCATCCAAAGGGAAGATTGAAGTCACTTTGCAAGATGGAAGGACATTTGAGGGGAAAGTGGTGAATGCTGACATGCATTCAGATATTGCTGTTGTGAAGATAAATTCTGAAACCCCACTTCCGGAAGCAAAGCTTGGTTCTTCAACTAGGCTTCGTCCCGGGGATTGGGTAATAGCCATGGGTTGTCCGCATTCCCTTCAGAATACTGTCACTGCTGGTATTGTAAGTTGCGTTGACCGTAAAAGCAGTGATTTGGGATTTAGTGGCTCGCCCAGAGAGTATTTACAAACAGATTGTGCAATTAATGTGGGAAATTCTGGAGGGCCACTTGTCAATATGGATGGAGAAATTGTTGGAGTGAACATCATGAAAGTGTTGGCTGCTGATGGGTTGGGTTTTTCCGTACCAATCGACTCTGTGTGTAAAATTATAGAGCATTTCAAGAAAAGTGGGAGAGTGATACGGCCATGGCTTGGACTAAGAATGCTTGATCTAAATGAGATGATTATTGAGCAGCTTAAAAAGAAAGATGCTTCATTCCCTAATGTCAATAAGGGCATTCTTGTACCAATGGTAACTCCTGGGTCCCCTGGTGATCGTGCTGGGTTCCGTCCTGGTGATGTTGTCATTGAATTTGATGGAAAGCCCGTGGAAAGCATGAAGGAGGTTATTGAAATGATGGTGGACAAAGTTGGGGTGCCCATGAAGGTTGTAGTTAAAAGAGCGAATAATAAGTTTGCGACTTTAACTGTGATTCCGGAGGAATCCAATCTCAGCTTGTAG

Protein sequence

>Msa1039370

MSYFLSKLLRLNRSSAVGAVGIVAVGSTLLCSDNHTNSRTFVRVRIPLPLQDISWLTLATPFDLLRPHLSSFDQHGILALSSYRVSPVPSSDMSKESSGGVNDESKPSKDTFGRDTIANAAAKVGPAVVNISIPQDFYGFATGKSIGSGTIINKDGTILTCAHVVVDFHGTKGSSKGKIEVTLQDGRTFEGKVVNADMHSDIAVVKINSETPLPEAKLGSSTRLRPGDWVIAMGCPHSLQNTVTAGIVSCVDRKSSDLGFSGSPREYLQTDCAINVGNSGGPLVNMDGEIVGVNIMKVLAADGLGFSVPIDSVCKIIEHFKKSGRVIRPWLGLRMLDLNEMIIEQLKKKDASFPNVNKGILVPMVTPGSPGDRAGFRPGDVVIEFDGKPVESMKEVIEMMVDKVGVPMKVVVKRANNKFATLTVIPEESNLSL*