Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1039370 | XP_003626259.1 | 96.536 | 433 | 15 | 0 | 1 | 433 | 1 | 433 | 0.0 | 847 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1039370 | sp|Q3E6S8|DGP14_ARATH | 60.641 | 437 | 153 | 6 | 1 | 430 | 2 | 426 | 2.81e-180 | 512 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1039370 | A2Q336 | 96.536 | 433 | 15 | 0 | 1 | 433 | 1 | 433 | 0.0 | 847 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0171290 | Msa1039370 | 0.800017 | 1.755336e-48 | -8.615850e-47 |
Msa0369850 | Msa1039370 | 0.804186 | 2.437750e-49 | -8.615850e-47 |
Msa0376350 | Msa1039370 | 0.800909 | 1.155274e-48 | -8.615850e-47 |
Msa0410500 | Msa1039370 | 0.802641 | 5.095703e-49 | -8.615850e-47 |
Msa0417270 | Msa1039370 | 0.810837 | 9.449858e-51 | -8.615850e-47 |
Msa0428150 | Msa1039370 | 0.803201 | 3.903012e-49 | -8.615850e-47 |
Msa0462500 | Msa1039370 | 0.800915 | 1.151858e-48 | -8.615850e-47 |
Msa1039370 | Msa1082500 | 0.804106 | 2.533318e-49 | -8.615850e-47 |
Msa1039370 | Msa1165110 | 0.884573 | 1.708219e-71 | -8.615850e-47 |
Msa1039370 | Msa1233890 | 0.803403 | 3.545106e-49 | -8.615850e-47 |
Msa1039370 | Msa1373150 | 0.873610 | 1.287088e-67 | -8.615850e-47 |
Msa1039370 | Msa1460050 | 0.801455 | 8.930221e-49 | -8.615850e-47 |
Msa0525900 | Msa1039370 | 0.889459 | 2.377642e-73 | -8.615850e-47 |
Msa0602310 | Msa1039370 | 0.801078 | 1.067078e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1039370 | MtrunA17_Chr7g0272621 | 96.536 | 433 | 15 | 0 | 1 | 433 | 1 | 433 | 0.0 | 847 |
Msa1039370 | MtrunA17_Chr6g0450671 | 30.255 | 314 | 173 | 11 | 128 | 418 | 128 | 418 | 3.09e-32 | 127 |
Msa1039370 | MtrunA17_Chr6g0453121 | 28.571 | 308 | 182 | 10 | 147 | 430 | 165 | 458 | 4.79e-30 | 121 |
Msa1039370 | MtrunA17_Chr2g0285791 | 35.519 | 183 | 108 | 5 | 147 | 320 | 133 | 314 | 2.35e-22 | 97.4 |
Msa1039370 | MtrunA17_Chr5g0426331 | 27.143 | 280 | 159 | 7 | 167 | 415 | 137 | 402 | 3.35e-19 | 89.4 |
Msa1039370 | MtrunA17_Chr5g0426381 | 35.135 | 111 | 71 | 1 | 308 | 417 | 1 | 111 | 2.13e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1039370 | AT5G27660.2 | 61.556 | 437 | 155 | 5 | 1 | 430 | 2 | 432 | 0.0 | 528 |
Msa1039370 | AT5G27660.1 | 62.118 | 425 | 142 | 6 | 13 | 430 | 9 | 421 | 0.0 | 511 |
Msa1039370 | AT3G27925.1 | 31.193 | 327 | 178 | 11 | 128 | 429 | 135 | 439 | 4.91e-34 | 132 |
Msa1039370 | AT3G27925.2 | 31.193 | 327 | 178 | 11 | 128 | 429 | 135 | 439 | 4.91e-34 | 132 |
Msa1039370 | AT5G39830.1 | 29.545 | 308 | 179 | 10 | 147 | 430 | 155 | 448 | 4.77e-31 | 124 |
Msa1039370 | AT5G39830.2 | 28.525 | 305 | 172 | 10 | 147 | 430 | 155 | 434 | 1.15e-26 | 111 |
Msa1039370 | AT4G18370.1 | 36.458 | 192 | 110 | 6 | 147 | 328 | 131 | 320 | 2.05e-21 | 94.7 |
Find 149 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTTGAGATCCTCTCCATTT+AGG | 0.184232 | 7_1:+76523496 | None:intergenic |
CGTTGAAGAGTGTAGAATTT+TGG | 0.246728 | 7_1:-76528471 | Msa1039370:five_prime_UTR |
GTTGAGATCCTCTCCATTTA+GGG | 0.246868 | 7_1:+76523497 | None:intergenic |
TTCATTCCCTAATGTCAATA+AGG | 0.269170 | 7_1:-76525119 | Msa1039370:CDS |
TGTATGGCACAGGGAAATTC+TGG | 0.299439 | 7_1:-76525644 | Msa1039370:intron |
TCCTTCTTCGGACATGTCTA+AGG | 0.307102 | 7_1:-76527714 | Msa1039370:CDS |
ATTGGCTTTGTAGATTTCTA+TGG | 0.309418 | 7_1:-76527497 | Msa1039370:intron |
TGGAGGGCCACTTGTCAATA+TGG | 0.315113 | 7_1:-76525624 | Msa1039370:CDS |
TCAACGCCAAGGGCCCTAAA+TGG | 0.323892 | 7_1:-76523510 | Msa1039370:three_prime_UTR |
CTAGGCTTCGTCCCGGGGAT+TGG | 0.328014 | 7_1:-76526068 | Msa1039370:CDS |
TGACCGTAAAAGCAGTGATT+TGG | 0.333135 | 7_1:-76525819 | Msa1039370:CDS |
TGCGACTTTAACTGTGATTC+CGG | 0.336668 | 7_1:-76523771 | Msa1039370:CDS |
AGAATGCCCTTATTGACATT+AGG | 0.346180 | 7_1:+76525112 | None:intergenic |
ATCTATCATGAGTTATTTCC+TGG | 0.355463 | 7_1:-76528441 | Msa1039370:intron |
GGGTCCCCTGGTGATCGTGC+TGG | 0.357975 | 7_1:-76524260 | Msa1039370:CDS |
GAATGCCCTTATTGACATTA+GGG | 0.359755 | 7_1:+76525113 | None:intergenic |
AAGCCATCTAAGGATACTTT+TGG | 0.364970 | 7_1:-76527662 | Msa1039370:CDS |
GACATGTCTAAGGAATCTTC+TGG | 0.365161 | 7_1:-76527704 | Msa1039370:CDS |
GACCGTAAAAGCAGTGATTT+GGG | 0.371160 | 7_1:-76525818 | Msa1039370:CDS |
ATCTGTTTGTAAATACTCTC+TGG | 0.378364 | 7_1:+76525781 | None:intergenic |
TGATGAATCAAAGCCATCTA+AGG | 0.379781 | 7_1:-76527672 | Msa1039370:CDS |
AGCAGTGATTTGGGATTTAG+TGG | 0.380979 | 7_1:-76525809 | Msa1039370:CDS |
GATGTTGTCATTGAATTTGA+TGG | 0.389841 | 7_1:-76524224 | Msa1039370:CDS |
AAGGAGTGAACGGGAGGAAG+AGG | 0.389975 | 7_1:+76523532 | None:intergenic |
AGTTAGCCCTGTTCCTTCTT+CGG | 0.392277 | 7_1:-76527726 | Msa1039370:CDS |
TTGAACACAAACCTTCCCTT+TGG | 0.396372 | 7_1:+76527367 | None:intergenic |
AAATGATGGTGGACAAAGTT+GGG | 0.397529 | 7_1:-76523835 | Msa1039370:CDS |
TAGGCTTCGTCCCGGGGATT+GGG | 0.404252 | 7_1:-76526067 | Msa1039370:CDS |
ATGTGAACAAGTGATATATT+TGG | 0.407669 | 7_1:-76523657 | Msa1039370:three_prime_UTR |
CAAAGCTTGGTTCTTCAACT+AGG | 0.415056 | 7_1:-76526086 | Msa1039370:CDS |
TCCTCTCCATTTAGGGCCCT+TGG | 0.417772 | 7_1:+76523504 | None:intergenic |
CCAAGCTTTGCTTCCGGAAG+TGG | 0.420101 | 7_1:+76526099 | None:intergenic |
AAATTCTGAAACCCCACTTC+CGG | 0.423531 | 7_1:-76526112 | Msa1039370:CDS |
CAAGATGGAAGGACATTTGA+GGG | 0.423591 | 7_1:-76526183 | Msa1039370:CDS |
TTTAGGGCCCTTGGCGTTGA+AGG | 0.425402 | 7_1:+76523513 | None:intergenic |
CTTCAACTAGGCTTCGTCCC+GGG | 0.427401 | 7_1:-76526074 | Msa1039370:CDS |
CGGAACCCAGCACGATCACC+AGG | 0.431496 | 7_1:+76524254 | None:intergenic |
TGCCATTGCAAGATATATCA+TGG | 0.437451 | 7_1:-76527943 | Msa1039370:CDS |
CTACCAAAAGTATCCTTAGA+TGG | 0.439534 | 7_1:+76527659 | None:intergenic |
TCATTCCCTAATGTCAATAA+GGG | 0.444524 | 7_1:-76525118 | Msa1039370:CDS |
GGAATCCAATCTCAGCTTGT+AGG | 0.450834 | 7_1:-76523747 | Msa1039370:exon |
AACTAATGACTAAAGTGAAC+GGG | 0.452413 | 7_1:+76523475 | None:intergenic |
AGTCTCCTACAAGCTGAGAT+TGG | 0.457251 | 7_1:+76523742 | None:intergenic |
GGTCCCCTGGTGATCGTGCT+GGG | 0.461837 | 7_1:-76524259 | Msa1039370:CDS |
ACTGGAATTAGTGTGGTTAT+CGG | 0.462039 | 7_1:+76528253 | None:intergenic |
ACATGTCTAAGGAATCTTCT+GGG | 0.468550 | 7_1:-76527703 | Msa1039370:CDS |
GTTGGAGGTTATTGAAATGA+TGG | 0.469435 | 7_1:-76523849 | Msa1039370:intron |
GAAGAACCAAGCTTTGCTTC+CGG | 0.472595 | 7_1:+76526093 | None:intergenic |
GTGGACGTAACAAATCAAAC+GGG | 0.472824 | 7_1:+76527906 | None:intergenic |
TTTGCTACAGGGAAGAGTAT+TGG | 0.475530 | 7_1:-76527473 | Msa1039370:CDS |
TAGGTAACTCCTGGGTCCCC+TGG | 0.475953 | 7_1:-76524272 | Msa1039370:CDS |
AGTGTTGGCTGCTGATGGGT+TGG | 0.476294 | 7_1:-76525570 | Msa1039370:CDS |
AGGAGTGAACGGGAGGAAGA+GGG | 0.476400 | 7_1:+76523533 | None:intergenic |
ATAGAGCATTTCAAGAAAAG+TGG | 0.478194 | 7_1:-76525512 | Msa1039370:CDS |
TGTGGACGTAACAAATCAAA+CGG | 0.478244 | 7_1:+76527905 | None:intergenic |
GTGTTGGCTGCTGATGGGTT+GGG | 0.482417 | 7_1:-76525569 | Msa1039370:CDS |
GACATGTCCGAAGAAGGAAC+AGG | 0.489693 | 7_1:+76527719 | None:intergenic |
TACCTCCTTCATGCTTTCCA+CGG | 0.491263 | 7_1:+76524196 | None:intergenic |
CAAGCTTTGCTTCCGGAAGT+GGG | 0.491393 | 7_1:+76526100 | None:intergenic |
AGCTCTGCCGTTGGAGCTGT+GGG | 0.496151 | 7_1:-76528308 | Msa1039370:CDS |
GATCGTGCTGGGTTCCGTCC+TGG | 0.498642 | 7_1:-76524248 | Msa1039370:CDS |
TTGGCGTTGAAGGAGTGAAC+GGG | 0.499034 | 7_1:+76523523 | None:intergenic |
GCAAGATGGAAGGACATTTG+AGG | 0.500220 | 7_1:-76526184 | Msa1039370:CDS |
ATTGAAGTCACTTTGCAAGA+TGG | 0.504105 | 7_1:-76526198 | Msa1039370:CDS |
CGGGGATTGGGTAATAGCCA+TGG | 0.506433 | 7_1:-76526055 | Msa1039370:CDS |
ATCGAAATATTAACAACAGC+AGG | 0.506520 | 7_1:+76527602 | None:intergenic |
CCACTTCCGGAAGCAAAGCT+TGG | 0.510741 | 7_1:-76526099 | Msa1039370:CDS |
AAGGACATTTGAGGGGAAAG+TGG | 0.512120 | 7_1:-76526175 | Msa1039370:CDS |
AGAGTGATACGGCCATGGCT+TGG | 0.514213 | 7_1:-76525199 | Msa1039370:CDS |
GGAACAATCATTAACAAAGA+TGG | 0.515974 | 7_1:-76527446 | Msa1039370:CDS |
ATGAAAGTGTTGGCTGCTGA+TGG | 0.519245 | 7_1:-76525575 | Msa1039370:CDS |
TTCAACTAGGCTTCGTCCCG+GGG | 0.519860 | 7_1:-76526073 | Msa1039370:CDS |
AAGCTCTGCCGTTGGAGCTG+TGG | 0.521174 | 7_1:-76528309 | Msa1039370:CDS |
GCAAATGCTGCTGCTAAAGT+TGG | 0.521599 | 7_1:-76527626 | Msa1039370:CDS |
CGTTCACTCCTTCAACGCCA+AGG | 0.524270 | 7_1:-76523521 | Msa1039370:three_prime_UTR |
GAAATGATGGTGGACAAAGT+TGG | 0.526009 | 7_1:-76523836 | Msa1039370:CDS |
TCCTTAGACATGTCCGAAGA+AGG | 0.531571 | 7_1:+76527713 | None:intergenic |
ACCTCCTTCATGCTTTCCAC+GGG | 0.531605 | 7_1:+76524197 | None:intergenic |
GCACAAAAGGTTCATCCAAA+GGG | 0.534147 | 7_1:-76527382 | Msa1039370:CDS |
CATGAAAATCAACGACAACA+TGG | 0.539853 | 7_1:+76527405 | None:intergenic |
TCTTCAACTAGGCTTCGTCC+CGG | 0.539957 | 7_1:-76526075 | Msa1039370:CDS |
TCAGGAGAGTGATACGGCCA+TGG | 0.540162 | 7_1:-76525204 | Msa1039370:intron |
ACAGGGAAGAGTATTGGCTC+TGG | 0.541432 | 7_1:-76527467 | Msa1039370:CDS |
CTGTCACTGCTGGTATTGTA+AGG | 0.545354 | 7_1:-76526008 | Msa1039370:intron |
CATGGCTATTACCCAATCCC+CGG | 0.547015 | 7_1:+76526056 | None:intergenic |
AAGGGAATGCGGACAACCCA+TGG | 0.551296 | 7_1:+76526038 | None:intergenic |
GGCACAAAAGGTTCATCCAA+AGG | 0.554675 | 7_1:-76527383 | Msa1039370:CDS |
TAAGGGCATTCTTGTACCAA+TGG | 0.554993 | 7_1:-76525101 | Msa1039370:intron |
TTGAACAGAAGCTCTGCCGT+TGG | 0.555512 | 7_1:-76528317 | Msa1039370:CDS |
GGGCCACTTGTCAATATGGA+TGG | 0.558327 | 7_1:-76525620 | Msa1039370:CDS |
GTTCACTCCTTCAACGCCAA+GGG | 0.561597 | 7_1:-76523520 | Msa1039370:three_prime_UTR |
CTTCAGAATACTGTCACTGC+TGG | 0.562372 | 7_1:-76526018 | Msa1039370:CDS |
TAGAGCATTTCAAGAAAAGT+GGG | 0.563537 | 7_1:-76525511 | Msa1039370:intron |
ACACACAGAGTCGATTGGTA+CGG | 0.565045 | 7_1:+76525541 | None:intergenic |
AGATATATCATGGTTGACAT+TGG | 0.565755 | 7_1:-76527933 | Msa1039370:CDS |
AACCATGATATATCTTGCAA+TGG | 0.566757 | 7_1:+76527941 | None:intergenic |
GATATATCTTGCAATGGCAA+AGG | 0.570631 | 7_1:+76527947 | None:intergenic |
CAGCAGTGACAGTATTCTGA+AGG | 0.571751 | 7_1:+76526019 | None:intergenic |
TAGGAACGTTCGTACGTGTG+CGG | 0.573882 | 7_1:-76527973 | Msa1039370:CDS |
AATATGGATGGAGAAATTGT+TGG | 0.576439 | 7_1:-76525608 | Msa1039370:CDS |
TCTGTTTGTAAATACTCTCT+GGG | 0.577942 | 7_1:+76525782 | None:intergenic |
AACGATACCCACAGCTCCAA+CGG | 0.578717 | 7_1:+76528301 | None:intergenic |
GCTGTGGGTATCGTTGCTGT+TGG | 0.578767 | 7_1:-76528293 | Msa1039370:CDS |
AAGCTGAGATTGGATTCCTC+CGG | 0.580230 | 7_1:+76523752 | None:intergenic |
AAGTCACTTTGCAAGATGGA+AGG | 0.582092 | 7_1:-76526194 | Msa1039370:CDS |
CTTGGCGTTGAAGGAGTGAA+CGG | 0.585542 | 7_1:+76523522 | None:intergenic |
AAACTAATGACTAAAGTGAA+CGG | 0.587325 | 7_1:+76523474 | None:intergenic |
GGGGATTGGGTAATAGCCAT+GGG | 0.587526 | 7_1:-76526054 | Msa1039370:CDS |
ATGAAAATCAACGACAACAT+GGG | 0.587711 | 7_1:+76527406 | None:intergenic |
AAAAGGTTCATCCAAAGGGA+AGG | 0.590674 | 7_1:-76527378 | Msa1039370:intron |
ATGGCTATTACCCAATCCCC+GGG | 0.595774 | 7_1:+76526057 | None:intergenic |
GGTCAAGTTGGTAGAGCCAG+AGG | 0.599131 | 7_1:+76523610 | None:intergenic |
CATGTCTAAGGAATCTTCTG+GGG | 0.599417 | 7_1:-76527702 | Msa1039370:CDS |
TGAAAGTGTTGGCTGCTGAT+GGG | 0.600081 | 7_1:-76525574 | Msa1039370:CDS |
GAACCCAGCACGATCACCAG+GGG | 0.600193 | 7_1:+76524256 | None:intergenic |
GCACGATCACCAGGGGACCC+AGG | 0.601429 | 7_1:+76524263 | None:intergenic |
ATTGCTCACTGGAATTAGTG+TGG | 0.602326 | 7_1:+76528246 | None:intergenic |
TCTCCATCCATATTGACAAG+TGG | 0.603386 | 7_1:+76525617 | None:intergenic |
CAAAGTTGGGGTGCCCATGA+AGG | 0.604534 | 7_1:-76523822 | Msa1039370:CDS |
AACAGATTGTGCAATTAATG+TGG | 0.605597 | 7_1:-76525765 | Msa1039370:intron |
TGAATTTGATGGAAAGCCCG+TGG | 0.609844 | 7_1:-76524213 | Msa1039370:CDS |
TGGTCGAAAGACGACAAATG+TGG | 0.613228 | 7_1:+76527887 | None:intergenic |
AAAGCCCGTGGAAAGCATGA+AGG | 0.616163 | 7_1:-76524201 | Msa1039370:CDS |
AAGCTTTGCTTCCGGAAGTG+GGG | 0.621714 | 7_1:+76526101 | None:intergenic |
TTGTCGTCTTTCGACCAACA+TGG | 0.625198 | 7_1:-76527881 | Msa1039370:intron |
CACTGAAAAGGTTGTGACAG+TGG | 0.627131 | 7_1:-76528509 | Msa1039370:five_prime_UTR |
AATTCAATGACAACATCACC+AGG | 0.627515 | 7_1:+76524230 | None:intergenic |
AGCATTCTTAGTCCAAGCCA+TGG | 0.630955 | 7_1:+76525187 | None:intergenic |
GGAGGTTATTGAAATGATGG+TGG | 0.634489 | 7_1:-76523846 | Msa1039370:intron |
TTGATGGTGTACAACAAAGC+TGG | 0.638889 | 7_1:+76523570 | None:intergenic |
AGCAGTGACAGTATTCTGAA+GGG | 0.641778 | 7_1:+76526020 | None:intergenic |
GTTAATATTTCGATTCCACA+AGG | 0.645580 | 7_1:-76527593 | Msa1039370:intron |
GCCAAGGGCCCTAAATGGAG+AGG | 0.645596 | 7_1:-76523505 | Msa1039370:three_prime_UTR |
AGAAAGAGGACAAACCATGT+TGG | 0.646314 | 7_1:+76527867 | None:intergenic |
GGAACCCAGCACGATCACCA+GGG | 0.647337 | 7_1:+76524255 | None:intergenic |
GACTTTAACTGTGATTCCGG+AGG | 0.651382 | 7_1:-76523768 | Msa1039370:CDS |
ACAGTATTCTGAAGGGAATG+CGG | 0.654266 | 7_1:+76526027 | None:intergenic |
ATGGCACAGGGAAATTCTGG+AGG | 0.659592 | 7_1:-76525641 | Msa1039370:intron |
CAATGACAACATCACCAGGA+CGG | 0.663393 | 7_1:+76524234 | None:intergenic |
GCCCGTGGAAAGCATGAAGG+AGG | 0.665398 | 7_1:-76524198 | Msa1039370:intron |
AACTTGTCATCAATGAAACA+AGG | 0.669183 | 7_1:+76523683 | None:intergenic |
ATGTCTAAGGAATCTTCTGG+GGG | 0.674606 | 7_1:-76527701 | Msa1039370:CDS |
AGTGAACATCATGAAAGTGT+TGG | 0.676552 | 7_1:-76525585 | Msa1039370:CDS |
GCGTTGAAGGAGTGAACGGG+AGG | 0.677613 | 7_1:+76523526 | None:intergenic |
ACATGTCCGAAGAAGGAACA+GGG | 0.682454 | 7_1:+76527720 | None:intergenic |
TGGCACAGGGAAATTCTGGA+GGG | 0.686679 | 7_1:-76525640 | Msa1039370:intron |
AAGATGGAAGGACATTTGAG+GGG | 0.693003 | 7_1:-76526182 | Msa1039370:CDS |
AATGATGGTGGACAAAGTTG+GGG | 0.709009 | 7_1:-76523834 | Msa1039370:CDS |
TGGACGTAACAAATCAAACG+GGG | 0.745894 | 7_1:+76527907 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTAAAGTAAAAGAAAAT+AGG | + | chr7_1:76526016-76526035 | None:intergenic | 10.0% |
!!! | TTTTTTTATAACAATAACAA+CGG | - | chr7_1:76527416-76527435 | Msa1039370:CDS | 10.0% |
!! | TAATCTTGAAATAAAGTTAA+TGG | - | chr7_1:76523754-76523773 | Msa1039370:CDS | 15.0% |
!!! | TATTTTCAGAATAATTTTCT+AGG | + | chr7_1:76527185-76527204 | None:intergenic | 15.0% |
!! | TAAGATAAAATAAAATGATC+TGG | - | chr7_1:76527842-76527861 | Msa1039370:intron | 15.0% |
!! | AAGATAAAATAAAATGATCT+GGG | - | chr7_1:76527843-76527862 | Msa1039370:intron | 15.0% |
!! | AATAATCAATTCATCTAACA+TGG | - | chr7_1:76523946-76523965 | Msa1039370:intron | 20.0% |
!!! | ATTTAGAACTGAAAATTTGT+AGG | - | chr7_1:76524178-76524197 | Msa1039370:intron | 20.0% |
!!! | TTTAGAACTGAAAATTTGTA+GGG | - | chr7_1:76524179-76524198 | Msa1039370:intron | 20.0% |
!! | AAGAAATATATCTTGAATTG+TGG | + | chr7_1:76525128-76525147 | None:intergenic | 20.0% |
!! | TGTTAAATCTAACATTGAAA+TGG | + | chr7_1:76526042-76526061 | None:intergenic | 20.0% |
!!! | CTGATTTTTTAAATGTCTTT+TGG | - | chr7_1:76526066-76526085 | Msa1039370:CDS | 20.0% |
!!! | TTCATGTATTGTATGATTTT+TGG | - | chr7_1:76526098-76526117 | Msa1039370:CDS | 20.0% |
!! | GATCATAATATATCCATAAA+AGG | + | chr7_1:76526629-76526648 | None:intergenic | 20.0% |
!!! | AGTAAACTTTTTTTCTTTTC+AGG | - | chr7_1:76526729-76526748 | Msa1039370:intron | 20.0% |
!! | AAAATTACACAAAACATAAG+CGG | + | chr7_1:76527496-76527515 | None:intergenic | 20.0% |
!!! | AAATTTAAACGTTTTTGACT+AGG | - | chr7_1:76527660-76527679 | Msa1039370:CDS | 20.0% |
!! | AGATAAAATAAAATGATCTG+GGG | - | chr7_1:76527844-76527863 | Msa1039370:intron | 20.0% |
!! | CAAACTTATACTAATCTTTA+GGG | - | chr7_1:76527912-76527931 | Msa1039370:CDS | 20.0% |
! | AGAAAGAATTAACAAATACC+AGG | + | chr7_1:76523531-76523550 | None:intergenic | 25.0% |
! | TGGTATATACTAACTAGTTA+TGG | + | chr7_1:76525108-76525127 | None:intergenic | 25.0% |
! | AATTCAATTGTTAGAGTGAT+AGG | + | chr7_1:76525246-76525265 | None:intergenic | 25.0% |
! | TATTAAAAGTGAATGTGGAA+AGG | + | chr7_1:76525278-76525297 | None:intergenic | 25.0% |
!!! | TCCACATTCACTTTTAATAA+TGG | - | chr7_1:76525279-76525298 | Msa1039370:intron | 25.0% |
!!! | CCACATTCACTTTTAATAAT+GGG | - | chr7_1:76525280-76525299 | Msa1039370:intron | 25.0% |
! | AGGATGTTAAGAAAGATAAA+GGG | + | chr7_1:76525344-76525363 | None:intergenic | 25.0% |
! | TCTTGATATTCTTATGTTGT+AGG | - | chr7_1:76525509-76525528 | Msa1039370:intron | 25.0% |
!! | TTGAGTCTTAAATGATTTTC+AGG | + | chr7_1:76525618-76525637 | None:intergenic | 25.0% |
! | AAAGAAAATAGGTTAAAACC+AGG | + | chr7_1:76526005-76526024 | None:intergenic | 25.0% |
! | TTCAGATTGTCACATATAAA+CGG | + | chr7_1:76526550-76526569 | None:intergenic | 25.0% |
!! | CTTACAATTTTCACCTTTTA+TGG | - | chr7_1:76526613-76526632 | Msa1039370:intron | 25.0% |
! | GTCAATCAAAATTGTTTATG+CGG | + | chr7_1:76526651-76526670 | None:intergenic | 25.0% |
!! | TTGATTGACATACTTTTATG+TGG | - | chr7_1:76526662-76526681 | Msa1039370:intron | 25.0% |
! | CATCTAAAGATCGATTAATT+GGG | + | chr7_1:76526882-76526901 | None:intergenic | 25.0% |
!! | ATACTTGTTACTATCATACT+TGG | - | chr7_1:76527127-76527146 | Msa1039370:intron | 25.0% |
! | TTTGATCTATCAATAAGATG+AGG | + | chr7_1:76527210-76527229 | None:intergenic | 25.0% |
! | ATTACAAATCAAAGAGAAGA+TGG | - | chr7_1:76527304-76527323 | Msa1039370:intron | 25.0% |
! | CCTAAAGATTAGTATAAGTT+TGG | + | chr7_1:76527914-76527933 | None:intergenic | 25.0% |
! | CCAAACTTATACTAATCTTT+AGG | - | chr7_1:76527911-76527930 | Msa1039370:CDS | 25.0% |
! | CATAATGAAGAATAATCTCA+CGG | + | chr7_1:76528036-76528055 | None:intergenic | 25.0% |
! | TCACATAGATGTAAAATTGT+TGG | - | chr7_1:76528084-76528103 | Msa1039370:intron | 25.0% |
! | ATGTGAACAAGTGATATATT+TGG | - | chr7_1:76528294-76528313 | Msa1039370:CDS | 25.0% |
! | AAACTAATGACTAAAGTGAA+CGG | + | chr7_1:76528480-76528499 | None:intergenic | 25.0% |
! | ATCTATCATGAGTTATTTCC+TGG | - | chr7_1:76523510-76523529 | Msa1039370:three_prime_UTR | 30.0% |
! | TTGAAGAATCTCTCTGATTT+TGG | - | chr7_1:76523577-76523596 | Msa1039370:three_prime_UTR | 30.0% |
! | TGAAGAATCTCTCTGATTTT+GGG | - | chr7_1:76523578-76523597 | Msa1039370:three_prime_UTR | 30.0% |
AGATTTAGTTAATTGCTCAC+TGG | + | chr7_1:76523719-76523738 | None:intergenic | 30.0% | |
! | TTAATGGCATGCTTTTCAAT+TGG | - | chr7_1:76523770-76523789 | Msa1039370:CDS | 30.0% |
AATATTGACGATGCATACAA+AGG | - | chr7_1:76523910-76523929 | Msa1039370:intron | 30.0% | |
TCTAACATGGCTTCAAATTT+AGG | - | chr7_1:76523959-76523978 | Msa1039370:intron | 30.0% | |
AACCATGATATATCTTGCAA+TGG | + | chr7_1:76524013-76524032 | None:intergenic | 30.0% | |
AGATATATCATGGTTGACAT+TGG | - | chr7_1:76524018-76524037 | Msa1039370:intron | 30.0% | |
TAAAAGTTCAAACCAGAAAG+AGG | + | chr7_1:76524101-76524120 | None:intergenic | 30.0% | |
ATCGAAATATTAACAACAGC+AGG | + | chr7_1:76524352-76524371 | None:intergenic | 30.0% | |
GTTAATATTTCGATTCCACA+AGG | - | chr7_1:76524358-76524377 | Msa1039370:intron | 30.0% | |
AACGATTCATTCAGATGAAA+AGG | + | chr7_1:76524392-76524411 | None:intergenic | 30.0% | |
!! | ATTGGCTTTGTAGATTTCTA+TGG | - | chr7_1:76524454-76524473 | Msa1039370:intron | 30.0% |
!! | ATTTCTATGGTTTTGCTACA+GGG | - | chr7_1:76524467-76524486 | Msa1039370:intron | 30.0% |
GGAACAATCATTAACAAAGA+TGG | - | chr7_1:76524505-76524524 | Msa1039370:intron | 30.0% | |
ATGAAAATCAACGACAACAT+GGG | + | chr7_1:76524548-76524567 | None:intergenic | 30.0% | |
TTCAAGACAGTGTACATATT+TGG | + | chr7_1:76524626-76524645 | None:intergenic | 30.0% | |
ATATAACTGTAGCTTGATAC+TGG | + | chr7_1:76524760-76524779 | None:intergenic | 30.0% | |
GATGTATTTGTGCAAAACTA+AGG | + | chr7_1:76525016-76525035 | None:intergenic | 30.0% | |
CTACATGAGTTAGAATAAGA+CGG | - | chr7_1:76525080-76525099 | Msa1039370:intron | 30.0% | |
GAAAGAAAGTTCAACTGTTA+GGG | + | chr7_1:76525205-76525224 | None:intergenic | 30.0% | |
TGAAAGAAAGTTCAACTGTT+AGG | + | chr7_1:76525206-76525225 | None:intergenic | 30.0% | |
CCCATTATTAAAAGTGAATG+TGG | + | chr7_1:76525283-76525302 | None:intergenic | 30.0% | |
CAAGATTAGAGAGAAAATTG+TGG | + | chr7_1:76525311-76525330 | None:intergenic | 30.0% | |
GAGGATGTTAAGAAAGATAA+AGG | + | chr7_1:76525345-76525364 | None:intergenic | 30.0% | |
CTTGTAATGAGCTTATGTAT+GGG | + | chr7_1:76525398-76525417 | None:intergenic | 30.0% | |
ACTTGTAATGAGCTTATGTA+TGG | + | chr7_1:76525399-76525418 | None:intergenic | 30.0% | |
ATGATAGTTTATCATGCTGT+AGG | - | chr7_1:76525423-76525442 | Msa1039370:intron | 30.0% | |
ATATCAAGAACCAATTGTTC+TGG | + | chr7_1:76525498-76525517 | None:intergenic | 30.0% | |
ATATTGAGAACCAATTGATC+CGG | + | chr7_1:76525556-76525575 | None:intergenic | 30.0% | |
TCTGTTTGTAAATACTCTCT+GGG | + | chr7_1:76526172-76526191 | None:intergenic | 30.0% | |
ATCTGTTTGTAAATACTCTC+TGG | + | chr7_1:76526173-76526192 | None:intergenic | 30.0% | |
AACAGATTGTGCAATTAATG+TGG | - | chr7_1:76526186-76526205 | Msa1039370:CDS | 30.0% | |
ATAAACTACCCAAGTAGATA+TGG | - | chr7_1:76526235-76526254 | Msa1039370:intron | 30.0% | |
TCCATATTCCATATCTACTT+GGG | + | chr7_1:76526246-76526265 | None:intergenic | 30.0% | |
ATCCATATTCCATATCTACT+TGG | + | chr7_1:76526247-76526266 | None:intergenic | 30.0% | |
GTAGATATGGAATATGGATT+TGG | - | chr7_1:76526248-76526267 | Msa1039370:intron | 30.0% | |
AATATGGATGGAGAAATTGT+TGG | - | chr7_1:76526343-76526362 | Msa1039370:intron | 30.0% | |
! | ATAGAGCATTTCAAGAAAAG+TGG | - | chr7_1:76526439-76526458 | Msa1039370:intron | 30.0% |
! | TAGAGCATTTCAAGAAAAGT+GGG | - | chr7_1:76526440-76526459 | Msa1039370:intron | 30.0% |
TCCAAGCAGAAAGTTTAATT+AGG | - | chr7_1:76526584-76526603 | Msa1039370:intron | 30.0% | |
TGGTTAATACTTGAGTAGTT+AGG | - | chr7_1:76526682-76526701 | Msa1039370:intron | 30.0% | |
TTCATTCCCTAATGTCAATA+AGG | - | chr7_1:76526832-76526851 | Msa1039370:intron | 30.0% | |
TCATTCCCTAATGTCAATAA+GGG | - | chr7_1:76526833-76526852 | Msa1039370:intron | 30.0% | |
ATTAATTGGGAACATACCAT+TGG | + | chr7_1:76526869-76526888 | None:intergenic | 30.0% | |
GCATCTAAAGATCGATTAAT+TGG | + | chr7_1:76526883-76526902 | None:intergenic | 30.0% | |
! | TTTTCAGAATCTAGATTCAC+AGG | - | chr7_1:76526915-76526934 | Msa1039370:intron | 30.0% |
TTCAAAGTTGTTTGCAAAGT+TGG | - | chr7_1:76526985-76527004 | Msa1039370:intron | 30.0% | |
TTATTATGTTAGTGAAGCCA+TGG | - | chr7_1:76527087-76527106 | Msa1039370:intron | 30.0% | |
TATTATGTTAGTGAAGCCAT+GGG | - | chr7_1:76527088-76527107 | Msa1039370:intron | 30.0% | |
TGTTACTATCATACTTGGAT+AGG | - | chr7_1:76527132-76527151 | Msa1039370:intron | 30.0% | |
GTTACTATCATACTTGGATA+GGG | - | chr7_1:76527133-76527152 | Msa1039370:intron | 30.0% | |
CTAGGATTCTCACTTTAATA+GGG | + | chr7_1:76527167-76527186 | None:intergenic | 30.0% | |
! | TCTAGGATTCTCACTTTAAT+AGG | + | chr7_1:76527168-76527187 | None:intergenic | 30.0% |
AAGTGAACACAAAAACAAAG+AGG | - | chr7_1:76527228-76527247 | Msa1039370:intron | 30.0% | |
CGTAACTATCACAATTAGAT+AGG | + | chr7_1:76527382-76527401 | None:intergenic | 30.0% | |
AATGTTGTCTAATCAGAAAG+AGG | + | chr7_1:76527452-76527471 | None:intergenic | 30.0% | |
GAAATAATGTGTTTGTCACA+AGG | - | chr7_1:76527637-76527656 | Msa1039370:CDS | 30.0% | |
GATGTTGTCATTGAATTTGA+TGG | - | chr7_1:76527727-76527746 | Msa1039370:CDS | 30.0% | |
!!! | TCGATTTTTTTTACTGTCTG+TGG | + | chr7_1:76528013-76528032 | None:intergenic | 30.0% |
CATAGATGTAAAATTGTTGG+AGG | - | chr7_1:76528087-76528106 | Msa1039370:intron | 30.0% | |
!! | CTTTTAACTACAACCTTCAT+GGG | + | chr7_1:76528145-76528164 | None:intergenic | 30.0% |
!! | TCTTTTAACTACAACCTTCA+TGG | + | chr7_1:76528146-76528165 | None:intergenic | 30.0% |
AACTTGTCATCAATGAAACA+AGG | + | chr7_1:76528271-76528290 | None:intergenic | 30.0% | |
!!! | CCTTTATTTTTTGGTCAAGT+TGG | + | chr7_1:76528356-76528375 | None:intergenic | 30.0% |
CCAACTTGACCAAAAAATAA+AGG | - | chr7_1:76528353-76528372 | Msa1039370:intron | 30.0% | |
!!! | CTGGTAGAACCTTTATTTTT+TGG | + | chr7_1:76528365-76528384 | None:intergenic | 30.0% |
! | GGAGAAAAATTTAGTGTTGA+TGG | + | chr7_1:76528400-76528419 | None:intergenic | 30.0% |
AACTAATGACTAAAGTGAAC+GGG | + | chr7_1:76528479-76528498 | None:intergenic | 30.0% | |
!! | CGTTGAAGAGTGTAGAATTT+TGG | - | chr7_1:76523480-76523499 | Msa1039370:three_prime_UTR | 35.0% |
! | GAAGAATCTCTCTGATTTTG+GGG | - | chr7_1:76523579-76523598 | Msa1039370:three_prime_UTR | 35.0% |
! | AAGAATCTCTCTGATTTTGG+GGG | - | chr7_1:76523580-76523599 | Msa1039370:three_prime_UTR | 35.0% |
ACTGGAATTAGTGTGGTTAT+CGG | + | chr7_1:76523701-76523720 | None:intergenic | 35.0% | |
GATATATCTTGCAATGGCAA+AGG | + | chr7_1:76524007-76524026 | None:intergenic | 35.0% | |
TGCCATTGCAAGATATATCA+TGG | - | chr7_1:76524008-76524027 | Msa1039370:intron | 35.0% | |
TGTGGACGTAACAAATCAAA+CGG | + | chr7_1:76524049-76524068 | None:intergenic | 35.0% | |
CACATACATCTAAACATGCA+TGG | + | chr7_1:76524154-76524173 | None:intergenic | 35.0% | |
ACATGTCTAAGGAATCTTCT+GGG | - | chr7_1:76524248-76524267 | Msa1039370:CDS | 35.0% | |
TGATGAATCAAAGCCATCTA+AGG | - | chr7_1:76524279-76524298 | Msa1039370:intron | 35.0% | |
! | AAGCCATCTAAGGATACTTT+TGG | - | chr7_1:76524289-76524308 | Msa1039370:intron | 35.0% |
!! | CTACCAAAAGTATCCTTAGA+TGG | + | chr7_1:76524295-76524314 | None:intergenic | 35.0% |
GAAAAGGTAGAAAAACCTTG+TGG | + | chr7_1:76524376-76524395 | None:intergenic | 35.0% | |
!!! | CTCTTTTGAGATTATGCTGA+TGG | - | chr7_1:76524423-76524442 | Msa1039370:intron | 35.0% |
TTGAGATTATGCTGATGGTT+TGG | - | chr7_1:76524428-76524447 | Msa1039370:intron | 35.0% | |
!! | GATTTCTATGGTTTTGCTAC+AGG | - | chr7_1:76524466-76524485 | Msa1039370:intron | 35.0% |
CATGAAAATCAACGACAACA+TGG | + | chr7_1:76524549-76524568 | None:intergenic | 35.0% | |
!!! | CATGTTGTCGTTGATTTTCA+TGG | - | chr7_1:76524547-76524566 | Msa1039370:intron | 35.0% |
!! | GTTGATTTTCATGGCACAAA+AGG | - | chr7_1:76524556-76524575 | Msa1039370:intron | 35.0% |
GAAGGTTTGTGTTCAAGAAA+GGG | - | chr7_1:76524591-76524610 | Msa1039370:intron | 35.0% | |
AGTTCTCTGTGATGTAAATG+TGG | - | chr7_1:76524677-76524696 | Msa1039370:intron | 35.0% | |
! | ATGTGGTAGAAGAGTACAAT+TGG | - | chr7_1:76524694-76524713 | Msa1039370:intron | 35.0% |
! | TGCAAACGAAACATGCTTTT+GGG | + | chr7_1:76524726-76524745 | None:intergenic | 35.0% |
! | ATGCAAACGAAACATGCTTT+TGG | + | chr7_1:76524727-76524746 | None:intergenic | 35.0% |
CTTTGTATGACTCAAAGCTA+GGG | - | chr7_1:76524836-76524855 | Msa1039370:intron | 35.0% | |
GTACTTTCTGAGTCATGATT+TGG | - | chr7_1:76524885-76524904 | Msa1039370:intron | 35.0% | |
TGATCCATTCCCAACAAAAT+AGG | - | chr7_1:76524916-76524935 | Msa1039370:intron | 35.0% | |
GATCCATTCCCAACAAAATA+GGG | - | chr7_1:76524917-76524936 | Msa1039370:intron | 35.0% | |
! | AAGCAATGCCCTATTTTGTT+GGG | + | chr7_1:76524928-76524947 | None:intergenic | 35.0% |
! | TAAGCAATGCCCTATTTTGT+TGG | + | chr7_1:76524929-76524948 | None:intergenic | 35.0% |
! | TCGTTTTCATTCAGTTCTGT+AGG | + | chr7_1:76524971-76524990 | None:intergenic | 35.0% |
ACTGTAACAACCAAACCTTT+AGG | - | chr7_1:76525048-76525067 | Msa1039370:intron | 35.0% | |
AGTTCAACTGTTAGGGTAAA+AGG | + | chr7_1:76525198-76525217 | None:intergenic | 35.0% | |
AAAAGTGAATGTGGAAAGGA+AGG | + | chr7_1:76525274-76525293 | None:intergenic | 35.0% | |
GCTAAATGAGCTACTATACA+AGG | + | chr7_1:76525449-76525468 | None:intergenic | 35.0% | |
ATAGTAGCTCATTTAGCTGT+AGG | - | chr7_1:76525452-76525471 | Msa1039370:intron | 35.0% | |
! | ATTGAAGTCACTTTGCAAGA+TGG | - | chr7_1:76525753-76525772 | Msa1039370:intron | 35.0% |
!! | ATCCCAAATCACTGCTTTTA+CGG | + | chr7_1:76526138-76526157 | None:intergenic | 35.0% |
ATCTACTTGGGTAGTTTATG+CGG | + | chr7_1:76526234-76526253 | None:intergenic | 35.0% | |
ACCCAAGTAGATATGGAATA+TGG | - | chr7_1:76526242-76526261 | Msa1039370:intron | 35.0% | |
TTGCATGTTATCTGCTTGTA+TGG | - | chr7_1:76526291-76526310 | Msa1039370:intron | 35.0% | |
! | AGTGAACATCATGAAAGTGT+TGG | - | chr7_1:76526366-76526385 | Msa1039370:intron | 35.0% |
! | ATTTTACACACAGAGTCGAT+TGG | + | chr7_1:76526418-76526437 | None:intergenic | 35.0% |
AAGAAAAGTGGGTATGTTTC+TGG | - | chr7_1:76526451-76526470 | Msa1039370:intron | 35.0% | |
GCCTAATTAAACTTTCTGCT+TGG | + | chr7_1:76526588-76526607 | None:intergenic | 35.0% | |
!! | TTCTTTTCAGGAGAGTGATA+CGG | - | chr7_1:76526741-76526760 | Msa1039370:intron | 35.0% |
GAATGCCCTTATTGACATTA+GGG | + | chr7_1:76526841-76526860 | None:intergenic | 35.0% | |
AGAATGCCCTTATTGACATT+AGG | + | chr7_1:76526842-76526861 | None:intergenic | 35.0% | |
!! | TGCTTTCTTTTGCTATGCTT+TGG | - | chr7_1:76527047-76527066 | Msa1039370:intron | 35.0% |
TAATCAGAAAGAGGAGTAAG+GGG | + | chr7_1:76527443-76527462 | None:intergenic | 35.0% | |
CTAATCAGAAAGAGGAGTAA+GGG | + | chr7_1:76527444-76527463 | None:intergenic | 35.0% | |
TCTAATCAGAAAGAGGAGTA+AGG | + | chr7_1:76527445-76527464 | None:intergenic | 35.0% | |
TACACAAAACATAAGCGGAA+TGG | + | chr7_1:76527491-76527510 | None:intergenic | 35.0% | |
GAGCAACACAATGCATATTA+TGG | + | chr7_1:76527590-76527609 | None:intergenic | 35.0% | |
!! | TTTTTGACTAGGTAACTCCT+GGG | - | chr7_1:76527671-76527690 | Msa1039370:CDS | 35.0% |
AATTCAATGACAACATCACC+AGG | + | chr7_1:76527724-76527743 | None:intergenic | 35.0% | |
GTTGGAGGTTATTGAAATGA+TGG | - | chr7_1:76528102-76528121 | Msa1039370:intron | 35.0% | |
!! | AAATGATGGTGGACAAAGTT+GGG | - | chr7_1:76528116-76528135 | Msa1039370:intron | 35.0% |
!!! | GCACAAGTTTTTTTAACCTC+TGG | - | chr7_1:76528325-76528344 | Msa1039370:CDS | 35.0% |
ATTGCTCACTGGAATTAGTG+TGG | + | chr7_1:76523708-76523727 | None:intergenic | 40.0% | |
TGGACGTAACAAATCAAACG+GGG | + | chr7_1:76524047-76524066 | None:intergenic | 40.0% | |
GTGGACGTAACAAATCAAAC+GGG | + | chr7_1:76524048-76524067 | None:intergenic | 40.0% | |
AGAAAGAGGACAAACCATGT+TGG | + | chr7_1:76524087-76524106 | None:intergenic | 40.0% | |
! | AACATGGTTTGTCCTCTTTC+TGG | - | chr7_1:76524086-76524105 | Msa1039370:intron | 40.0% |
GACATGTCTAAGGAATCTTC+TGG | - | chr7_1:76524247-76524266 | Msa1039370:CDS | 40.0% | |
CATGTCTAAGGAATCTTCTG+GGG | - | chr7_1:76524249-76524268 | Msa1039370:CDS | 40.0% | |
ATGTCTAAGGAATCTTCTGG+GGG | - | chr7_1:76524250-76524269 | Msa1039370:CDS | 40.0% | |
! | ATGCTGATGGTTTGGAGTAT+TGG | - | chr7_1:76524436-76524455 | Msa1039370:intron | 40.0% |
! | TTTGCTACAGGGAAGAGTAT+TGG | - | chr7_1:76524478-76524497 | Msa1039370:intron | 40.0% |
GCACAAAAGGTTCATCCAAA+GGG | - | chr7_1:76524569-76524588 | Msa1039370:intron | 40.0% | |
AAAAGGTTCATCCAAAGGGA+AGG | - | chr7_1:76524573-76524592 | Msa1039370:intron | 40.0% | |
TTGAACACAAACCTTCCCTT+TGG | + | chr7_1:76524587-76524606 | None:intergenic | 40.0% | |
GGAAGGTTTGTGTTCAAGAA+AGG | - | chr7_1:76524590-76524609 | Msa1039370:intron | 40.0% | |
GCTTTGTATGACTCAAAGCT+AGG | - | chr7_1:76524835-76524854 | Msa1039370:intron | 40.0% | |
! | ATGCCCTATTTTGTTGGGAA+TGG | + | chr7_1:76524923-76524942 | None:intergenic | 40.0% |
AACGACGATTCTGTGAATTC+TGG | - | chr7_1:76524986-76525005 | Msa1039370:intron | 40.0% | |
AACAACCAAACCTTTAGGTG+AGG | - | chr7_1:76525053-76525072 | Msa1039370:intron | 40.0% | |
ATGTAGTTGACCTCACCTAA+AGG | + | chr7_1:76525066-76525085 | None:intergenic | 40.0% | |
ATCTAAATCCCTGCTAACGT+TGG | - | chr7_1:76525150-76525169 | Msa1039370:CDS | 40.0% | |
GACAGCAAAAAGGCAAAATG+AGG | + | chr7_1:76525364-76525383 | None:intergenic | 40.0% | |
CTGAAAACTCGACAGCAAAA+AGG | + | chr7_1:76525374-76525393 | None:intergenic | 40.0% | |
!! | TTGTATAGTAGCTTGCTTGC+CGG | - | chr7_1:76525534-76525553 | Msa1039370:CDS | 40.0% |
TCTGATGTCTTCATTTCACG+AGG | + | chr7_1:76525703-76525722 | None:intergenic | 40.0% | |
! | AAGTCACTTTGCAAGATGGA+AGG | - | chr7_1:76525757-76525776 | Msa1039370:intron | 40.0% |
CAAGATGGAAGGACATTTGA+GGG | - | chr7_1:76525768-76525787 | Msa1039370:CDS | 40.0% | |
AAGATGGAAGGACATTTGAG+GGG | - | chr7_1:76525769-76525788 | Msa1039370:CDS | 40.0% | |
!! | AAATTCTGAAACCCCACTTC+CGG | - | chr7_1:76525839-76525858 | Msa1039370:intron | 40.0% |
! | CAAAGCTTGGTTCTTCAACT+AGG | - | chr7_1:76525865-76525884 | Msa1039370:intron | 40.0% |
! | ACAGTATTCTGAAGGGAATG+CGG | + | chr7_1:76525927-76525946 | None:intergenic | 40.0% |
AGCAGTGACAGTATTCTGAA+GGG | + | chr7_1:76525934-76525953 | None:intergenic | 40.0% | |
GGTGCGAAGATAAAACTTTC+TGG | - | chr7_1:76525964-76525983 | Msa1039370:intron | 40.0% | |
TGACCGTAAAAGCAGTGATT+TGG | - | chr7_1:76526132-76526151 | Msa1039370:CDS | 40.0% | |
GACCGTAAAAGCAGTGATTT+GGG | - | chr7_1:76526133-76526152 | Msa1039370:CDS | 40.0% | |
! | AGCAGTGATTTGGGATTTAG+TGG | - | chr7_1:76526142-76526161 | Msa1039370:CDS | 40.0% |
TCTACTTGGGTAGTTTATGC+GGG | + | chr7_1:76526233-76526252 | None:intergenic | 40.0% | |
TTATCTGCTTGTATGGCACA+GGG | - | chr7_1:76526298-76526317 | Msa1039370:intron | 40.0% | |
TCTCCATCCATATTGACAAG+TGG | + | chr7_1:76526337-76526356 | None:intergenic | 40.0% | |
!! | TAAGGGCATTCTTGTACCAA+TGG | - | chr7_1:76526850-76526869 | Msa1039370:intron | 40.0% |
TTCACAGGACAGTATCTTCA+TGG | - | chr7_1:76526930-76526949 | Msa1039370:intron | 40.0% | |
TTGTGATAGTTACGTGTAGC+AGG | - | chr7_1:76527388-76527407 | Msa1039370:CDS | 40.0% | |
CACAATGCATATTATGGCAG+AGG | + | chr7_1:76527584-76527603 | None:intergenic | 40.0% | |
!! | GTTTTTGACTAGGTAACTCC+TGG | - | chr7_1:76527670-76527689 | Msa1039370:CDS | 40.0% |
GGAGGTTATTGAAATGATGG+TGG | - | chr7_1:76528105-76528124 | Msa1039370:intron | 40.0% | |
!! | GAAATGATGGTGGACAAAGT+TGG | - | chr7_1:76528115-76528134 | Msa1039370:intron | 40.0% |
!! | AATGATGGTGGACAAAGTTG+GGG | - | chr7_1:76528117-76528136 | Msa1039370:intron | 40.0% |
TGCGACTTTAACTGTGATTC+CGG | - | chr7_1:76528180-76528199 | Msa1039370:intron | 40.0% | |
!! | TTGATGGTGTACAACAAAGC+TGG | + | chr7_1:76528384-76528403 | None:intergenic | 40.0% |
GTTGAGATCCTCTCCATTTA+GGG | + | chr7_1:76528457-76528476 | None:intergenic | 40.0% | |
TGGTCGAAAGACGACAAATG+TGG | + | chr7_1:76524067-76524086 | None:intergenic | 45.0% | |
TTGTCGTCTTTCGACCAACA+TGG | - | chr7_1:76524070-76524089 | Msa1039370:intron | 45.0% | |
AGTTAGCCCTGTTCCTTCTT+CGG | - | chr7_1:76524225-76524244 | Msa1039370:CDS | 45.0% | |
ACATGTCCGAAGAAGGAACA+GGG | + | chr7_1:76524234-76524253 | None:intergenic | 45.0% | |
TCCTTCTTCGGACATGTCTA+AGG | - | chr7_1:76524237-76524256 | Msa1039370:CDS | 45.0% | |
TCCTTAGACATGTCCGAAGA+AGG | + | chr7_1:76524241-76524260 | None:intergenic | 45.0% | |
GCAAATGCTGCTGCTAAAGT+TGG | - | chr7_1:76524325-76524344 | Msa1039370:intron | 45.0% | |
GGCACAAAAGGTTCATCCAA+AGG | - | chr7_1:76524568-76524587 | Msa1039370:intron | 45.0% | |
! | GAAGTGCTACTGTTCTTGCT+TGG | - | chr7_1:76524806-76524825 | Msa1039370:intron | 45.0% |
TACTGTTCTTGCTTGGTCTG+TGG | - | chr7_1:76524813-76524832 | Msa1039370:intron | 45.0% | |
TGTATGACTCAAAGCTAGGG+TGG | - | chr7_1:76524839-76524858 | Msa1039370:intron | 45.0% | |
TAGGGTGGCTTAAGATCTGA+TGG | - | chr7_1:76524854-76524873 | Msa1039370:intron | 45.0% | |
AGGGTGGCTTAAGATCTGAT+GGG | - | chr7_1:76524855-76524874 | Msa1039370:intron | 45.0% | |
GTTGACCTCACCTAAAGGTT+TGG | + | chr7_1:76525061-76525080 | None:intergenic | 45.0% | |
CTCAAAGTCCAACGTTAGCA+GGG | + | chr7_1:76525161-76525180 | None:intergenic | 45.0% | |
ACTCAAAGTCCAACGTTAGC+AGG | + | chr7_1:76525162-76525181 | None:intergenic | 45.0% | |
AGTGAATGTGGAAAGGAAGG+AGG | + | chr7_1:76525271-76525290 | None:intergenic | 45.0% | |
! | AGCTTGCTTGCCAGAACAAT+TGG | - | chr7_1:76525485-76525504 | Msa1039370:intron | 45.0% |
GGCAAGCAAGCTACTATACA+AGG | + | chr7_1:76525535-76525554 | None:intergenic | 45.0% | |
GCAAGATGGAAGGACATTTG+AGG | - | chr7_1:76525767-76525786 | Msa1039370:CDS | 45.0% | |
AAGGACATTTGAGGGGAAAG+TGG | - | chr7_1:76525776-76525795 | Msa1039370:CDS | 45.0% | |
GAAGAACCAAGCTTTGCTTC+CGG | + | chr7_1:76525861-76525880 | None:intergenic | 45.0% | |
CAGCAGTGACAGTATTCTGA+AGG | + | chr7_1:76525935-76525954 | None:intergenic | 45.0% | |
CTTCAGAATACTGTCACTGC+TGG | - | chr7_1:76525933-76525952 | Msa1039370:intron | 45.0% | |
CTGTCACTGCTGGTATTGTA+AGG | - | chr7_1:76525943-76525962 | Msa1039370:intron | 45.0% | |
TGGCTGTAAAAGATGTCTCC+TGG | - | chr7_1:76525984-76526003 | Msa1039370:intron | 45.0% | |
TGGGTAGTTTATGCGGGAAA+AGG | + | chr7_1:76526227-76526246 | None:intergenic | 45.0% | |
GTTATCTGCTTGTATGGCAC+AGG | - | chr7_1:76526297-76526316 | Msa1039370:intron | 45.0% | |
TGTATGGCACAGGGAAATTC+TGG | - | chr7_1:76526307-76526326 | Msa1039370:intron | 45.0% | |
!! | ATGAAAGTGTTGGCTGCTGA+TGG | - | chr7_1:76526376-76526395 | Msa1039370:intron | 45.0% |
!! | TGAAAGTGTTGGCTGCTGAT+GGG | - | chr7_1:76526377-76526396 | Msa1039370:intron | 45.0% |
ACACACAGAGTCGATTGGTA+CGG | + | chr7_1:76526413-76526432 | None:intergenic | 45.0% | |
AGCATTCTTAGTCCAAGCCA+TGG | + | chr7_1:76526767-76526786 | None:intergenic | 45.0% | |
TATGTTAGTGAAGCCATGGG+CGG | - | chr7_1:76527091-76527110 | Msa1039370:intron | 45.0% | |
! | CATTGTGTTGCTCAAATGCG+AGG | - | chr7_1:76527597-76527616 | Msa1039370:CDS | 45.0% |
CAATGACAACATCACCAGGA+CGG | + | chr7_1:76527720-76527739 | None:intergenic | 45.0% | |
TGAATTTGATGGAAAGCCCG+TGG | - | chr7_1:76527738-76527757 | Msa1039370:CDS | 45.0% | |
TACCTCCTTCATGCTTTCCA+CGG | + | chr7_1:76527758-76527777 | None:intergenic | 45.0% | |
GATCTGGGGAGCAAAACAAT+TGG | - | chr7_1:76527858-76527877 | Msa1039370:intron | 45.0% | |
GACTTTAACTGTGATTCCGG+AGG | - | chr7_1:76528183-76528202 | Msa1039370:intron | 45.0% | |
AAGCTGAGATTGGATTCCTC+CGG | + | chr7_1:76528202-76528221 | None:intergenic | 45.0% | |
GGAATCCAATCTCAGCTTGT+AGG | - | chr7_1:76528204-76528223 | Msa1039370:intron | 45.0% | |
AGTCTCCTACAAGCTGAGAT+TGG | + | chr7_1:76528212-76528231 | None:intergenic | 45.0% | |
GGTTGAGATCCTCTCCATTT+AGG | + | chr7_1:76528458-76528477 | None:intergenic | 45.0% | |
TTGAACAGAAGCTCTGCCGT+TGG | - | chr7_1:76523634-76523653 | Msa1039370:three_prime_UTR | 50.0% | |
AACGATACCCACAGCTCCAA+CGG | + | chr7_1:76523653-76523672 | None:intergenic | 50.0% | |
TAGGAACGTTCGTACGTGTG+CGG | - | chr7_1:76523978-76523997 | Msa1039370:intron | 50.0% | |
GACATGTCCGAAGAAGGAAC+AGG | + | chr7_1:76524235-76524254 | None:intergenic | 50.0% | |
!! | ACAGGGAAGAGTATTGGCTC+TGG | - | chr7_1:76524484-76524503 | Msa1039370:intron | 50.0% |
! | AGCTTGCTTGCCGGATCAAT+TGG | - | chr7_1:76525543-76525562 | Msa1039370:CDS | 50.0% |
AAGCTTTGCTTCCGGAAGTG+GGG | + | chr7_1:76525853-76525872 | None:intergenic | 50.0% | |
CAAGCTTTGCTTCCGGAAGT+GGG | + | chr7_1:76525854-76525873 | None:intergenic | 50.0% | |
TCTTCAACTAGGCTTCGTCC+CGG | - | chr7_1:76525876-76525895 | Msa1039370:intron | 50.0% | |
ATGGCTATTACCCAATCCCC+GGG | + | chr7_1:76525897-76525916 | None:intergenic | 50.0% | |
CATGGCTATTACCCAATCCC+CGG | + | chr7_1:76525898-76525917 | None:intergenic | 50.0% | |
GGGGATTGGGTAATAGCCAT+GGG | - | chr7_1:76525897-76525916 | Msa1039370:intron | 50.0% | |
ATGGCACAGGGAAATTCTGG+AGG | - | chr7_1:76526310-76526329 | Msa1039370:intron | 50.0% | |
TGGCACAGGGAAATTCTGGA+GGG | - | chr7_1:76526311-76526330 | Msa1039370:intron | 50.0% | |
TGGAGGGCCACTTGTCAATA+TGG | - | chr7_1:76526327-76526346 | Msa1039370:intron | 50.0% | |
GGGCCACTTGTCAATATGGA+TGG | - | chr7_1:76526331-76526350 | Msa1039370:intron | 50.0% | |
GTAGAAGTTTGAACCGCCCA+TGG | + | chr7_1:76527107-76527126 | None:intergenic | 50.0% | |
! | AAAGCCCGTGGAAAGCATGA+AGG | - | chr7_1:76527750-76527769 | Msa1039370:CDS | 50.0% |
ACCTCCTTCATGCTTTCCAC+GGG | + | chr7_1:76527757-76527776 | None:intergenic | 50.0% | |
! | TTGGCGTTGAAGGAGTGAAC+GGG | + | chr7_1:76528431-76528450 | None:intergenic | 50.0% |
! | CTTGGCGTTGAAGGAGTGAA+CGG | + | chr7_1:76528432-76528451 | None:intergenic | 50.0% |
GTTCACTCCTTCAACGCCAA+GGG | - | chr7_1:76528431-76528450 | Msa1039370:intron | 50.0% | |
! | GCTGTGGGTATCGTTGCTGT+TGG | - | chr7_1:76523658-76523677 | Msa1039370:three_prime_UTR | 55.0% |
CCAAGCTTTGCTTCCGGAAG+TGG | + | chr7_1:76525855-76525874 | None:intergenic | 55.0% | |
CCACTTCCGGAAGCAAAGCT+TGG | - | chr7_1:76525852-76525871 | Msa1039370:intron | 55.0% | |
CTTCAACTAGGCTTCGTCCC+GGG | - | chr7_1:76525877-76525896 | Msa1039370:intron | 55.0% | |
TTCAACTAGGCTTCGTCCCG+GGG | - | chr7_1:76525878-76525897 | Msa1039370:intron | 55.0% | |
CGGGGATTGGGTAATAGCCA+TGG | - | chr7_1:76525896-76525915 | Msa1039370:intron | 55.0% | |
AAGGGAATGCGGACAACCCA+TGG | + | chr7_1:76525916-76525935 | None:intergenic | 55.0% | |
!! | AGTGTTGGCTGCTGATGGGT+TGG | - | chr7_1:76526381-76526400 | Msa1039370:intron | 55.0% |
!! | GTGTTGGCTGCTGATGGGTT+GGG | - | chr7_1:76526382-76526401 | Msa1039370:intron | 55.0% |
TCAGGAGAGTGATACGGCCA+TGG | - | chr7_1:76526747-76526766 | Msa1039370:intron | 55.0% | |
AGAGTGATACGGCCATGGCT+TGG | - | chr7_1:76526752-76526771 | Msa1039370:intron | 55.0% | |
! | CAAAGTTGGGGTGCCCATGA+AGG | - | chr7_1:76528129-76528148 | Msa1039370:intron | 55.0% |
!! | GGTCAAGTTGGTAGAGCCAG+AGG | + | chr7_1:76528344-76528363 | None:intergenic | 55.0% |
AGGAGTGAACGGGAGGAAGA+GGG | + | chr7_1:76528421-76528440 | None:intergenic | 55.0% | |
AAGGAGTGAACGGGAGGAAG+AGG | + | chr7_1:76528422-76528441 | None:intergenic | 55.0% | |
CGTTCACTCCTTCAACGCCA+AGG | - | chr7_1:76528430-76528449 | Msa1039370:intron | 55.0% | |
! | TTTAGGGCCCTTGGCGTTGA+AGG | + | chr7_1:76528441-76528460 | None:intergenic | 55.0% |
TCAACGCCAAGGGCCCTAAA+TGG | - | chr7_1:76528441-76528460 | Msa1039370:intron | 55.0% | |
! | TCCTCTCCATTTAGGGCCCT+TGG | + | chr7_1:76528450-76528469 | None:intergenic | 55.0% |
AAGCTCTGCCGTTGGAGCTG+TGG | - | chr7_1:76523642-76523661 | Msa1039370:three_prime_UTR | 60.0% | |
AGCTCTGCCGTTGGAGCTGT+GGG | - | chr7_1:76523643-76523662 | Msa1039370:three_prime_UTR | 60.0% | |
TAGGCTTCGTCCCGGGGATT+GGG | - | chr7_1:76525884-76525903 | Msa1039370:intron | 60.0% | |
TAGGTAACTCCTGGGTCCCC+TGG | - | chr7_1:76527679-76527698 | Msa1039370:CDS | 60.0% | |
GAACCCAGCACGATCACCAG+GGG | + | chr7_1:76527698-76527717 | None:intergenic | 60.0% | |
GGAACCCAGCACGATCACCA+GGG | + | chr7_1:76527699-76527718 | None:intergenic | 60.0% | |
! | GCCCGTGGAAAGCATGAAGG+AGG | - | chr7_1:76527753-76527772 | Msa1039370:CDS | 60.0% |
GCGTTGAAGGAGTGAACGGG+AGG | + | chr7_1:76528428-76528447 | None:intergenic | 60.0% | |
GCCAAGGGCCCTAAATGGAG+AGG | - | chr7_1:76528446-76528465 | Msa1039370:exon | 60.0% | |
CTAGGCTTCGTCCCGGGGAT+TGG | - | chr7_1:76525883-76525902 | Msa1039370:intron | 65.0% | |
GGTCCCCTGGTGATCGTGCT+GGG | - | chr7_1:76527692-76527711 | Msa1039370:CDS | 65.0% | |
CGGAACCCAGCACGATCACC+AGG | + | chr7_1:76527700-76527719 | None:intergenic | 65.0% | |
GATCGTGCTGGGTTCCGTCC+TGG | - | chr7_1:76527703-76527722 | Msa1039370:CDS | 65.0% | |
GCACGATCACCAGGGGACCC+AGG | + | chr7_1:76527691-76527710 | None:intergenic | 70.0% | |
GGGTCCCCTGGTGATCGTGC+TGG | - | chr7_1:76527691-76527710 | Msa1039370:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_1 | gene | 76523445 | 76528528 | 76523445 | ID=Msa1039370;Name=Msa1039370 |
chr7_1 | mRNA | 76523445 | 76528528 | 76523445 | ID=Msa1039370-mRNA-1;Parent=Msa1039370;Name=Msa1039370-mRNA-1;_AED=0.23;_eAED=0.23;_QI=72|1|1|1|0.8|0.72|11|303|433 |
chr7_1 | exon | 76523445 | 76523864 | 76523445 | ID=Msa1039370-mRNA-1:exon:19897;Parent=Msa1039370-mRNA-1 |
chr7_1 | exon | 76524199 | 76524291 | 76524199 | ID=Msa1039370-mRNA-1:exon:19896;Parent=Msa1039370-mRNA-1 |
chr7_1 | exon | 76525102 | 76525222 | 76525102 | ID=Msa1039370-mRNA-1:exon:19895;Parent=Msa1039370-mRNA-1 |
chr7_1 | exon | 76525512 | 76525654 | 76525512 | ID=Msa1039370-mRNA-1:exon:19894;Parent=Msa1039370-mRNA-1 |
chr7_1 | exon | 76525766 | 76525847 | 76525766 | ID=Msa1039370-mRNA-1:exon:19893;Parent=Msa1039370-mRNA-1 |
chr7_1 | exon | 76526009 | 76526220 | 76526009 | ID=Msa1039370-mRNA-1:exon:19892;Parent=Msa1039370-mRNA-1 |
chr7_1 | exon | 76527379 | 76527506 | 76527379 | ID=Msa1039370-mRNA-1:exon:19891;Parent=Msa1039370-mRNA-1 |
chr7_1 | exon | 76527594 | 76527773 | 76527594 | ID=Msa1039370-mRNA-1:exon:19890;Parent=Msa1039370-mRNA-1 |
chr7_1 | exon | 76527882 | 76527992 | 76527882 | ID=Msa1039370-mRNA-1:exon:19889;Parent=Msa1039370-mRNA-1 |
chr7_1 | exon | 76528255 | 76528354 | 76528255 | ID=Msa1039370-mRNA-1:exon:19888;Parent=Msa1039370-mRNA-1 |
chr7_1 | exon | 76528442 | 76528528 | 76528442 | ID=Msa1039370-mRNA-1:exon:19887;Parent=Msa1039370-mRNA-1 |
chr7_1 | five_prime_UTR | 76528457 | 76528528 | 76528457 | ID=Msa1039370-mRNA-1:five_prime_utr;Parent=Msa1039370-mRNA-1 |
chr7_1 | CDS | 76528442 | 76528456 | 76528442 | ID=Msa1039370-mRNA-1:cds;Parent=Msa1039370-mRNA-1 |
chr7_1 | CDS | 76528255 | 76528354 | 76528255 | ID=Msa1039370-mRNA-1:cds;Parent=Msa1039370-mRNA-1 |
chr7_1 | CDS | 76527882 | 76527992 | 76527882 | ID=Msa1039370-mRNA-1:cds;Parent=Msa1039370-mRNA-1 |
chr7_1 | CDS | 76527594 | 76527773 | 76527594 | ID=Msa1039370-mRNA-1:cds;Parent=Msa1039370-mRNA-1 |
chr7_1 | CDS | 76527379 | 76527506 | 76527379 | ID=Msa1039370-mRNA-1:cds;Parent=Msa1039370-mRNA-1 |
chr7_1 | CDS | 76526009 | 76526220 | 76526009 | ID=Msa1039370-mRNA-1:cds;Parent=Msa1039370-mRNA-1 |
chr7_1 | CDS | 76525766 | 76525847 | 76525766 | ID=Msa1039370-mRNA-1:cds;Parent=Msa1039370-mRNA-1 |
chr7_1 | CDS | 76525512 | 76525654 | 76525512 | ID=Msa1039370-mRNA-1:cds;Parent=Msa1039370-mRNA-1 |
chr7_1 | CDS | 76525102 | 76525222 | 76525102 | ID=Msa1039370-mRNA-1:cds;Parent=Msa1039370-mRNA-1 |
chr7_1 | CDS | 76524199 | 76524291 | 76524199 | ID=Msa1039370-mRNA-1:cds;Parent=Msa1039370-mRNA-1 |
chr7_1 | CDS | 76523748 | 76523864 | 76523748 | ID=Msa1039370-mRNA-1:cds;Parent=Msa1039370-mRNA-1 |
chr7_1 | three_prime_UTR | 76523445 | 76523747 | 76523445 | ID=Msa1039370-mRNA-1:three_prime_utr;Parent=Msa1039370-mRNA-1 |
Gene Sequence |
Protein sequence |