AlfalfaGEDB | Msa0138970

M. sativa cultivar zhongmu-4 / Msa0138970

KEGG: K08341
GO: -
PFAM: PF02991.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0138970	XP_003591331.1	97.521	121	3	0	1	121	1	121	7.98e-82	245

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0138970	sp\|Q8S925\|ATG8H_ARATH	69.027	113	35	0	6	118	7	119	8.45e-56	172

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0138970	G7IBT1	97.521	121	3	0	1	121	1	121	3.81e-82	245

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0138970	0.852753	3.753285e-61	-8.615850e-47
Msa0000550	Msa0138970	0.843713	1.183217e-58	-8.615850e-47
Msa0001950	Msa0138970	-0.810950	8.930718e-51	-8.615850e-47
Msa0005000	Msa0138970	0.802914	4.474864e-49	-8.615850e-47
Msa0011850	Msa0138970	-0.827031	1.958473e-54	-8.615850e-47
Msa0024680	Msa0138970	-0.853953	1.698872e-61	-8.615850e-47
Msa0027540	Msa0138970	-0.807760	4.317824e-50	-8.615850e-47
Msa0028060	Msa0138970	-0.811359	7.284656e-51	-8.615850e-47
Msa0029540	Msa0138970	0.984782	1.426774e-161	-8.615850e-47
Msa0030310	Msa0138970	-0.827199	1.784545e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0138970	MtrunA17_Chr1g0194141	97.521	121	3	0	1	121	1	121	7.34e-86	245
Msa0138970	MtrunA17_Chr7g0260981	67.797	118	38	0	1	118	1	118	1.73e-59	179
Msa0138970	MtrunA17_Chr4g0069171	68.644	118	37	0	1	118	1	118	2.20e-59	178
Msa0138970	MtrunA17_Chr2g0288531	54.310	116	53	0	5	120	4	119	1.52e-43	138
Msa0138970	MtrunA17_Chr4g0024721	54.310	116	53	0	3	118	2	117	1.59e-43	138
Msa0138970	MtrunA17_Chr2g0322571	55.263	114	51	0	5	118	4	117	2.70e-42	135
Msa0138970	MtrunA17_Chr4g0056301	52.586	116	55	0	5	120	4	119	2.43e-41	133
Msa0138970	MtrunA17_Chr4g0019141	45.536	112	59	2	6	115	5	116	6.19e-27	96.7

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0138970	AT3G06420.1	69.027	113	35	6	118	7	119	8.59e-57	172
Msa0138970	AT3G15580.1	70.536	112	33	7	118	4	115	1.15e-56	172
Msa0138970	AT4G21980.1	57.265	117	50	5	121	4	120	5.00e-45	142
Msa0138970	AT4G21980.2	57.265	117	50	5	121	19	135	1.19e-44	142
Msa0138970	AT1G62040.1	56.897	116	50	3	118	2	117	2.21e-44	140
Msa0138970	AT2G45170.2	53.719	121	56	1	121	1	121	3.29e-44	140
Msa0138970	AT2G45170.1	53.719	121	56	1	121	1	121	3.29e-44	140
Msa0138970	AT4G04620.3	53.448	116	54	5	120	4	119	2.73e-42	135
Msa0138970	AT4G04620.2	53.448	116	54	5	120	4	119	2.73e-42	135
Msa0138970	AT4G04620.1	53.448	116	54	5	120	4	119	2.73e-42	135

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Find 35 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAATACTTTACCTCAAAC+TGG	0.387404	1_3:+72199367	Msa0138970:CDS
AATAAGAATGCAATAATTGG+TGG	0.588342	1_3:-72199676	None:intergenic
AATAGTTGACATTTATGTAC+AGG	0.446245	1_3:-72199571	None:intergenic
ACAAGGTTTCTGATATAAGA+AGG	0.484325	1_3:-72199623	None:intergenic
ACATTAATCAACAAGGATGT+AGG	0.509610	1_3:-72199823	None:intergenic
AGATCATTCAAGGATGAGGA+TGG	0.557576	1_3:+72199507	Msa0138970:CDS
ATATTTGTTGTATTGTTGTA+TGG	0.397542	1_3:+72199648	Msa0138970:three_prime_UTR
ATGAATAAGAATGCAATAAT+TGG	0.305135	1_3:-72199679	None:intergenic
ATGTATAACATTGAACCATT+TGG	0.355581	1_3:+72199714	Msa0138970:three_prime_UTR
CAAATGAGGCAGATCGCATT+TGG	0.427187	1_3:-72199129	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGATCTTCGACACAAAAAT+GGG	+	chr1_3:72198824-72198843	Msa0138970:exon	30.0%
AAGAATACTTTACCTCAAAC+TGG	+	chr1_3:72199367-72199386	Msa0138970:CDS	30.0%
CTCTGTTTATAGATCATTCA+AGG	+	chr1_3:72199497-72199516	Msa0138970:CDS	30.0%
TTATAGATCATTCAAGGATG+AGG	+	chr1_3:72199503-72199522	Msa0138970:CDS	30.0%
TTTCTGATATAAGAAGGTAG+TGG	-	chr1_3:72199620-72199639	None:intergenic	30.0%
ACAAGGTTTCTGATATAAGA+AGG	-	chr1_3:72199626-72199645	None:intergenic	30.0%
CAAATTCATAATAGCCCAAA+TGG	-	chr1_3:72199732-72199751	None:intergenic	30.0%
ACATTAATCAACAAGGATGT+AGG	-	chr1_3:72199826-72199845	None:intergenic	30.0%
TAGATCTTCGACACAAAAAT+GGG	+	chr1_3:72198824-72198843	Msa0138970:exon	30.0%
AAGAATACTTTACCTCAAAC+TGG	+	chr1_3:72199367-72199386	Msa0138970:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	72198765	72199917	72198765	ID=Msa0138970;Name=Msa0138970
chr1_3	mRNA	72198765	72199917	72198765	ID=Msa0138970-mRNA-1;Parent=Msa0138970;Name=Msa0138970-mRNA-1;_AED=0.13;_eAED=0.13;_QI=77\|1\|1\|1\|1\|1\|5\|336\|121
chr1_3	exon	72198765	72198881	72198765	ID=Msa0138970-mRNA-1:exon:25228;Parent=Msa0138970-mRNA-1
chr1_3	exon	72198966	72199021	72198966	ID=Msa0138970-mRNA-1:exon:25229;Parent=Msa0138970-mRNA-1
chr1_3	exon	72199110	72199162	72199110	ID=Msa0138970-mRNA-1:exon:25230;Parent=Msa0138970-mRNA-1
chr1_3	exon	72199270	72199388	72199270	ID=Msa0138970-mRNA-1:exon:25231;Parent=Msa0138970-mRNA-1
chr1_3	exon	72199484	72199917	72199484	ID=Msa0138970-mRNA-1:exon:25232;Parent=Msa0138970-mRNA-1
chr1_3	five_prime_UTR	72198765	72198841	72198765	ID=Msa0138970-mRNA-1:five_prime_utr;Parent=Msa0138970-mRNA-1
chr1_3	CDS	72198842	72198881	72198842	ID=Msa0138970-mRNA-1:cds;Parent=Msa0138970-mRNA-1
chr1_3	CDS	72198966	72199021	72198966	ID=Msa0138970-mRNA-1:cds;Parent=Msa0138970-mRNA-1
chr1_3	CDS	72199110	72199162	72199110	ID=Msa0138970-mRNA-1:cds;Parent=Msa0138970-mRNA-1
chr1_3	CDS	72199270	72199388	72199270	ID=Msa0138970-mRNA-1:cds;Parent=Msa0138970-mRNA-1
chr1_3	CDS	72199484	72199581	72199484	ID=Msa0138970-mRNA-1:cds;Parent=Msa0138970-mRNA-1
chr1_3	three_prime_UTR	72199582	72199917	72199582	ID=Msa0138970-mRNA-1:three_prime_utr;Parent=Msa0138970-mRNA-1

Gene Sequence	>Msa0138970 ATGGGAGGAGGTTCTTGTTTCCAGAACGAGTTTACGTTTGAACAAAGGCTTCAAGAATCACGTGATATTATTGCCAAATACCCCGATCGAATCCCCGTGATTGTGGAAAAGTATACCAAATGCGATCTGCCTCATTTGGAGAAGAAAAAATATCTTGTTCCACGAGACTTGTCAGTTGGACATTTCATTCATATTTTGAGTTCCAGACTTAATTTACCAGCTGGAAAAGCTCTCTTTGTATTTGTTAAGAATACTTTACCTCAAACTGCTAGTATGATGGACTCTGTTTATAGATCATTCAAGGATGAGGATGGATTTCTTTACCTGTATTATAGCACTGAGAAAACCTTTGGATCCTGTACATAA
Protein sequence	>Msa0138970 MGGGSCFQNEFTFEQRLQESRDIIAKYPDRIPVIVEKYTKCDLPHLEKKKYLVPRDLSVGHFIHILSSRLNLPAGKALFVFVKNTLPQTASMMDSVYRSFKDEDGFLYLYYSTEKTFGSCT*